Query psy12177
Match_columns 163
No_of_seqs 144 out of 394
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 20:38:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12177.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12177hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4431|consensus 99.9 2.3E-27 5E-32 179.1 7.6 74 90-163 14-88 (100)
2 PF04588 HIG_1_N: Hypoxia indu 99.8 4.6E-22 9.9E-27 133.9 2.6 54 102-155 1-54 (54)
3 PF11137 DUF2909: Protein of u 93.3 0.57 1.2E-05 33.1 6.9 54 107-160 4-59 (63)
4 PF12911 OppC_N: N-terminal TM 92.8 0.34 7.3E-06 31.5 4.9 34 92-125 2-35 (56)
5 smart00831 Cation_ATPase_N Cat 81.3 4.8 0.0001 26.4 4.9 40 76-116 18-57 (64)
6 PF05957 DUF883: Bacterial pro 78.0 4.5 9.8E-05 29.1 4.2 33 93-125 60-92 (94)
7 PRK10132 hypothetical protein; 74.3 6.1 0.00013 30.2 4.3 30 96-125 76-105 (108)
8 PF00690 Cation_ATPase_N: Cati 72.5 9.7 0.00021 25.6 4.5 38 73-111 25-62 (69)
9 PRK10404 hypothetical protein; 67.0 11 0.00024 28.4 4.2 29 96-124 70-98 (101)
10 COG4575 ElaB Uncharacterized c 64.0 9.6 0.00021 29.6 3.4 29 98-126 75-103 (104)
11 COG3197 FixS Uncharacterized p 56.5 15 0.00032 25.9 3.0 25 106-130 6-30 (58)
12 PF03188 Cytochrom_B561: Eukar 51.9 84 0.0018 23.1 6.7 29 134-162 31-59 (137)
13 PF03597 CcoS: Cytochrome oxid 50.5 25 0.00054 23.2 3.2 24 107-130 6-29 (45)
14 TIGR00847 ccoS cytochrome oxid 48.4 27 0.00059 23.7 3.2 24 107-130 7-30 (51)
15 TIGR02205 septum_zipA cell div 45.8 11 0.00024 33.3 1.3 24 106-129 5-28 (284)
16 PRK15122 magnesium-transportin 40.5 1.7E+02 0.0037 29.4 8.6 49 76-125 53-101 (903)
17 TIGR02598 Verrucomicrobium spi 39.5 57 0.0012 26.8 4.4 36 107-142 8-44 (151)
18 COG4171 SapC ABC-type antimicr 39.3 55 0.0012 29.3 4.6 36 86-121 7-42 (296)
19 PRK10527 hypothetical protein; 38.6 77 0.0017 24.8 4.9 29 115-143 28-56 (125)
20 PF03818 MadM: Malonate/sodium 38.1 1.3E+02 0.0029 21.3 5.5 47 96-151 2-48 (60)
21 PF08627 CRT-like: CRT-like; 36.7 39 0.00085 27.2 3.0 65 88-158 33-105 (130)
22 PF10999 DUF2839: Protein of u 36.1 98 0.0021 22.2 4.7 26 94-119 32-57 (68)
23 PF09716 ETRAMP: Malarial earl 35.8 66 0.0014 23.3 3.8 27 93-119 41-67 (84)
24 COG2976 Uncharacterized protei 35.6 49 0.0011 28.5 3.6 38 90-127 6-45 (207)
25 PRK01741 cell division protein 35.4 35 0.00076 31.2 2.8 24 106-129 6-29 (332)
26 KOG2631|consensus 34.7 16 0.00035 31.9 0.6 26 35-60 171-200 (238)
27 PF09163 Form-deh_trans: Forma 31.6 82 0.0018 20.9 3.4 24 104-127 9-32 (44)
28 PRK13751 putative mercuric tra 30.8 1.7E+02 0.0037 22.9 5.7 48 105-154 48-105 (116)
29 cd01484 E1-2_like Ubiquitin ac 29.7 1.8E+02 0.0039 24.6 6.0 74 46-125 154-230 (234)
30 COG4760 Predicted membrane pro 29.7 1.8E+02 0.0039 25.9 6.1 55 107-161 144-198 (276)
31 PRK04375 protoheme IX farnesyl 29.4 2.7E+02 0.0059 23.9 7.2 36 125-160 258-293 (296)
32 COG2322 Predicted membrane pro 28.9 2.8E+02 0.0061 23.5 6.9 44 110-158 51-94 (177)
33 KOG0204|consensus 28.5 1.5E+02 0.0033 31.0 6.1 88 34-124 75-174 (1034)
34 PF07344 Amastin: Amastin surf 27.8 69 0.0015 25.1 3.1 22 134-156 56-77 (155)
35 TIGR01523 ATPase-IID_K-Na pota 27.4 3.2E+02 0.0069 28.2 8.3 39 76-115 34-72 (1053)
36 KOG3012|consensus 27.4 4.5E+02 0.0097 23.5 8.4 64 98-162 74-138 (259)
37 PF05767 Pox_A14: Poxvirus vir 26.1 3E+02 0.0066 21.0 7.0 53 107-161 14-68 (92)
38 PF11240 DUF3042: Protein of u 25.7 91 0.002 21.6 2.9 20 108-127 8-27 (54)
39 KOG0860|consensus 25.1 68 0.0015 25.3 2.5 45 65-111 52-98 (116)
40 PHA03049 IMV membrane protein; 24.8 83 0.0018 22.9 2.7 20 108-127 7-26 (68)
41 PRK03427 cell division protein 24.6 63 0.0014 29.5 2.6 24 105-128 7-30 (333)
42 PRK04335 cell division protein 23.9 42 0.00091 30.3 1.3 26 106-131 7-33 (313)
43 PRK10517 magnesium-transportin 23.6 3.9E+02 0.0084 27.0 8.0 35 76-111 75-109 (902)
44 TIGR01524 ATPase-IIIB_Mg magne 23.4 3.8E+02 0.0083 26.8 7.8 35 76-111 41-75 (867)
45 PF05961 Chordopox_A13L: Chord 23.1 96 0.0021 22.5 2.8 21 107-127 6-26 (68)
46 PF02411 MerT: MerT mercuric t 22.7 3.7E+02 0.0079 20.8 6.5 24 104-127 47-70 (116)
47 KOG1692|consensus 22.7 68 0.0015 27.6 2.3 38 69-111 145-182 (201)
48 PF12351 Fig1: Ca2+ regulator 22.4 4.3E+02 0.0093 21.5 8.2 63 97-159 63-131 (182)
49 TIGR02230 ATPase_gene1 F0F1-AT 21.8 1.6E+02 0.0034 22.5 3.9 23 98-120 30-52 (100)
50 KOG1693|consensus 21.7 1.7E+02 0.0036 25.4 4.4 45 70-119 152-196 (209)
51 PF12932 Sec16: Vesicle coat t 21.2 1.2E+02 0.0026 22.7 3.1 26 57-84 61-86 (118)
52 PRK13730 conjugal transfer pil 20.7 85 0.0018 27.2 2.4 43 65-111 24-69 (212)
53 PF13997 YqjK: YqjK-like prote 20.5 90 0.0019 22.2 2.2 20 95-114 26-48 (73)
54 TIGR03647 Na_symport_sm probab 20.2 1.8E+02 0.004 21.1 3.8 59 103-161 4-65 (77)
55 PF13937 DUF4212: Domain of un 20.2 2.4E+02 0.0052 20.7 4.4 61 101-161 6-69 (81)
No 1
>KOG4431|consensus
Probab=99.94 E-value=2.3e-27 Score=179.08 Aligned_cols=74 Identities=57% Similarity=0.893 Sum_probs=70.9
Q ss_pred ccCChHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHhh-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy12177 90 TQETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMK-LGDRRLSQMMMRTRVVAQGFTVLALTGGLIYTAYQT 163 (163)
Q Consensus 90 ~~ET~~eKl~RK~kEnPLVpIG~laT~gaL~~Gl~sfr-~Gn~~~SqKLMR~RV~AQg~TVaaLv~G~~~~~yq~ 163 (163)
++++++||++||+||||||||||++|++++++|+|++| +||+++||+|||+||+||||||+||++|+.|++|+.
T Consensus 14 ed~~~~ekl~rk~kenP~VPlG~l~t~aal~~g~y~~r~rGn~~~sq~lmr~RVaAQgftV~AL~~G~~~~~~~e 88 (100)
T KOG4431|consen 14 EDMSQKEKLLRKAKENPLVPLGCLGTTAALTAGLYKFRSRGNSKMSQHLMRTRVAAQGFTVGALVLGLAYTMYKE 88 (100)
T ss_pred chhhHHHHHHHHHHhCCCeeehHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence 45689999999999999999999999999999999999 999999999999999999999999999999998863
No 2
>PF04588 HIG_1_N: Hypoxia induced protein conserved region; InterPro: IPR007667 The hypoxia induced gene 1 (HIG1) or hypoglycemia/hypoxia inducible mitochondrial protein (HIMP1) is up-regulated by stresses of the microenvironment such as low oxygen or low glucose conditions. HIG1 is a mitochondrial inner membrane protein, which is ubiquitously expressed. It is predicted to be an integral membrane protein consisting of two hydrophobic helices, 21-23 residues in length that might tend to form a hairpin-like loop across the bilayer. HIG1 could be implied in apoptotic or cytoprotective signals. HIG1 is a member of a well conserved eukaryote protein family. The predicted transmembrane helice (TMH) and loop regions represent the most highly conserved regions in these proteins [, ]. The profile we developed covers the predicted TMH and loop regions. This domain is found in proteins thought to be involved in the response to hypoxia []. It is also found in altered inheritance of mitochondria proteins.; PDB: 2LOM_A 2LON_A.
Probab=99.84 E-value=4.6e-22 Score=133.93 Aligned_cols=54 Identities=61% Similarity=0.942 Sum_probs=44.8
Q ss_pred HhhCCchHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12177 102 FKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQGFTVLALTGG 155 (163)
Q Consensus 102 ~kEnPLVpIG~laT~gaL~~Gl~sfr~Gn~~~SqKLMR~RV~AQg~TVaaLv~G 155 (163)
+||||++|||+++|+++|.+|+++|++||.+.||||||+||+|||+||++|++|
T Consensus 1 ~ke~plv~ig~~~~~~~l~~g~~~~~~g~~~~s~klmr~RV~aQ~~tv~~l~~G 54 (54)
T PF04588_consen 1 FKENPLVPIGMLATVGALAYGLYNFRRGNMKTSQKLMRARVYAQGLTVAALVGG 54 (54)
T ss_dssp S-S--CHHHHHHHHHHHHHHHHHHHTSSS----SSSSS-SHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 589999999999999999999999999999999999999999999999999987
No 3
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=93.28 E-value=0.57 Score=33.09 Aligned_cols=54 Identities=19% Similarity=0.108 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHHHHHHHHhh--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12177 107 LVPIGCVATSAALGVGLYSMK--LGDRRLSQMMMRTRVVAQGFTVLALTGGLIYTA 160 (163)
Q Consensus 107 LVpIG~laT~gaL~~Gl~sfr--~Gn~~~SqKLMR~RV~AQg~TVaaLv~G~~~~~ 160 (163)
++.+.+++.++.|..|++.+. +|+.++.-|..-+||.+=...++.++.|.+.-.
T Consensus 4 ~iv~lll~ii~sL~saL~~l~kd~~~~~rm~~~L~~RV~lS~~l~~lil~~~~~G~ 59 (63)
T PF11137_consen 4 LIVLLLLAIIASLFSALFFLVKDKGSSKRMVKALGRRVGLSALLFLLILIALYTGW 59 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 466778889999999999995 456666667777899999999999998887644
No 4
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=92.79 E-value=0.34 Score=31.48 Aligned_cols=34 Identities=18% Similarity=0.327 Sum_probs=29.4
Q ss_pred CChHHHHHHHHhhCCchHHHHHHHHHHHHHHHHH
Q psy12177 92 ETGTEKLIRKFKENPLVPIGCVATSAALGVGLYS 125 (163)
Q Consensus 92 ET~~eKl~RK~kEnPLVpIG~laT~gaL~~Gl~s 125 (163)
+|.+.+++|++++||+..+|++..+..++.++..
T Consensus 2 ~s~~~~~~~~f~~nk~a~~gl~il~~~vl~ai~~ 35 (56)
T PF12911_consen 2 RSPWKDAWRRFRRNKLAVIGLIILLILVLLAIFA 35 (56)
T ss_pred CCHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999988887777777665
No 5
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=81.29 E-value=4.8 Score=26.35 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=26.4
Q ss_pred HHHHHhhcCCccccccCChHHHHHHHHhhCCchHHHHHHHH
Q psy12177 76 TLQKKLQVGGYEQFTQETGTEKLIRKFKENPLVPIGCVATS 116 (163)
Q Consensus 76 q~re~~~~~~~~~~~~ET~~eKl~RK~kEnPLVpIG~laT~ 116 (163)
+.|+..+.+..+.-..++++.++++.++ +|++.+-+++.+
T Consensus 18 ~r~~~~G~N~l~~~~~~s~~~~~l~~~~-~p~~~iL~~~a~ 57 (64)
T smart00831 18 RRLERYGPNELPPPKKRSPLLRFLRQFH-NPLIYILLAAAV 57 (64)
T ss_pred HHHHHhCCCCCCCCCCCCHHHHHHHHHH-hHHHHHHHHHHH
Confidence 5666677664444556789999998886 677666444433
No 6
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=77.98 E-value=4.5 Score=29.08 Aligned_cols=33 Identities=24% Similarity=0.190 Sum_probs=26.8
Q ss_pred ChHHHHHHHHhhCCchHHHHHHHHHHHHHHHHH
Q psy12177 93 TGTEKLIRKFKENPLVPIGCVATSAALGVGLYS 125 (163)
Q Consensus 93 T~~eKl~RK~kEnPLVpIG~laT~gaL~~Gl~s 125 (163)
...+..-+.+++||+-.+|+++-+|+|+.-+.+
T Consensus 60 ~~~~~~~~~V~e~P~~svgiAagvG~llG~Ll~ 92 (94)
T PF05957_consen 60 EAAEQTEDYVRENPWQSVGIAAGVGFLLGLLLR 92 (94)
T ss_pred HHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHh
Confidence 345667788999999999999988888876653
No 7
>PRK10132 hypothetical protein; Provisional
Probab=74.25 E-value=6.1 Score=30.25 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=23.7
Q ss_pred HHHHHHHhhCCchHHHHHHHHHHHHHHHHH
Q psy12177 96 EKLIRKFKENPLVPIGCVATSAALGVGLYS 125 (163)
Q Consensus 96 eKl~RK~kEnPLVpIG~laT~gaL~~Gl~s 125 (163)
+..-..+++||+..||+++.+|+++..+.+
T Consensus 76 ~~~~~~V~~~Pw~svgiaagvG~llG~Ll~ 105 (108)
T PRK10132 76 GCADTFVRERPWCSVGTAAAVGIFIGALLS 105 (108)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence 344457889999999999998888877643
No 8
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=72.53 E-value=9.7 Score=25.56 Aligned_cols=38 Identities=13% Similarity=0.189 Sum_probs=28.6
Q ss_pred hHHHHHHHhhcCCccccccCChHHHHHHHHhhCCchHHH
Q psy12177 73 DWLTLQKKLQVGGYEQFTQETGTEKLIRKFKENPLVPIG 111 (163)
Q Consensus 73 dwiq~re~~~~~~~~~~~~ET~~eKl~RK~kEnPLVpIG 111 (163)
+--+.|+..|.+..++-...+++.++++.+ .||++.+-
T Consensus 25 ev~~r~~~~G~N~l~~~~~~s~~~~~~~~f-~~~~~~lL 62 (69)
T PF00690_consen 25 EVEERRKKYGPNELPEPKKKSLWRIFLKQF-KNPFIILL 62 (69)
T ss_dssp HHHHHHHHHSSSSTTTTTSSSHHHHHHHHT-TSHHHHHH
T ss_pred HHHHHHHhcccccccccccCcHHHHHHHHH-HhHHHHHH
Confidence 444566777877666777889999999998 67887763
No 9
>PRK10404 hypothetical protein; Provisional
Probab=66.98 E-value=11 Score=28.44 Aligned_cols=29 Identities=21% Similarity=0.046 Sum_probs=22.7
Q ss_pred HHHHHHHhhCCchHHHHHHHHHHHHHHHH
Q psy12177 96 EKLIRKFKENPLVPIGCVATSAALGVGLY 124 (163)
Q Consensus 96 eKl~RK~kEnPLVpIG~laT~gaL~~Gl~ 124 (163)
+..-+.+++||+--||+++.+|+++.-+.
T Consensus 70 ~~td~yV~e~Pw~avGiaagvGlllG~Ll 98 (101)
T PRK10404 70 YRADDYVHEKPWQGIGVGAAVGLVLGLLL 98 (101)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 34456689999999999888888776653
No 10
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=64.05 E-value=9.6 Score=29.57 Aligned_cols=29 Identities=28% Similarity=0.163 Sum_probs=24.1
Q ss_pred HHHHHhhCCchHHHHHHHHHHHHHHHHHh
Q psy12177 98 LIRKFKENPLVPIGCVATSAALGVGLYSM 126 (163)
Q Consensus 98 l~RK~kEnPLVpIG~laT~gaL~~Gl~sf 126 (163)
.=..++|||+--||+.+.+|.|+.-+.+.
T Consensus 75 tD~yV~e~PWq~VGvaAaVGlllGlLlsR 103 (104)
T COG4575 75 TDDYVRENPWQGVGVAAAVGLLLGLLLSR 103 (104)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHhc
Confidence 33467899999999999999998877664
No 11
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=56.53 E-value=15 Score=25.91 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=22.0
Q ss_pred CchHHHHHHHHHHHHHHHHHhhcCC
Q psy12177 106 PLVPIGCVATSAALGVGLYSMKLGD 130 (163)
Q Consensus 106 PLVpIG~laT~gaL~~Gl~sfr~Gn 130 (163)
.++|+++++.+..|..-+|++++|.
T Consensus 6 ~Lipvsi~l~~v~l~~flWavksgQ 30 (58)
T COG3197 6 ILIPVSILLGAVGLGAFLWAVKSGQ 30 (58)
T ss_pred eHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4789999999999999999999883
No 12
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=51.94 E-value=84 Score=23.14 Aligned_cols=29 Identities=10% Similarity=0.100 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12177 134 SQMMMRTRVVAQGFTVLALTGGLIYTAYQ 162 (163)
Q Consensus 134 SqKLMR~RV~AQg~TVaaLv~G~~~~~yq 162 (163)
.....+.=...|.+++++.++|.+...++
T Consensus 31 ~~~~~~~H~~lq~l~~~~~~~G~~~~~~~ 59 (137)
T PF03188_consen 31 RKWWFRIHWILQVLALVFAIIGFVAIFIN 59 (137)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567888899999999999998876553
No 13
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=50.54 E-value=25 Score=23.21 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=20.5
Q ss_pred chHHHHHHHHHHHHHHHHHhhcCC
Q psy12177 107 LVPIGCVATSAALGVGLYSMKLGD 130 (163)
Q Consensus 107 LVpIG~laT~gaL~~Gl~sfr~Gn 130 (163)
++|++++...+++..-+|+.|+|.
T Consensus 6 lip~sl~l~~~~l~~f~Wavk~GQ 29 (45)
T PF03597_consen 6 LIPVSLILGLIALAAFLWAVKSGQ 29 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCC
Confidence 578888888888889999999884
No 14
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=48.37 E-value=27 Score=23.74 Aligned_cols=24 Identities=33% Similarity=0.492 Sum_probs=20.9
Q ss_pred chHHHHHHHHHHHHHHHHHhhcCC
Q psy12177 107 LVPIGCVATSAALGVGLYSMKLGD 130 (163)
Q Consensus 107 LVpIG~laT~gaL~~Gl~sfr~Gn 130 (163)
++|++++..++++..-+|+.|+|.
T Consensus 7 LIpiSl~l~~~~l~~f~Wavk~GQ 30 (51)
T TIGR00847 7 LIPISLLLGGVGLVAFLWSLKSGQ 30 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCC
Confidence 678888888999999999999884
No 15
>TIGR02205 septum_zipA cell division protein ZipA. This model represents the full length of bacterial cell division protein ZipA. The N-terminal hydrophobic stretch is an uncleaved signal-anchor sequence. This is followed by an unconserved, variable length, low complexity region, and then a conserved C-terminal region of about 140 amino acids (see pfam04354) that interacts with the tubulin-like cell division protein FtsZ.
Probab=45.75 E-value=11 Score=33.32 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.6
Q ss_pred CchHHHHHHHHHHHHHHHHHhhcC
Q psy12177 106 PLVPIGCVATSAALGVGLYSMKLG 129 (163)
Q Consensus 106 PLVpIG~laT~gaL~~Gl~sfr~G 129 (163)
.|++||+++.++.|+-|+|..|+.
T Consensus 5 iLIIvGaiaI~aLl~hGlwt~Rke 28 (284)
T TIGR02205 5 ILIIVGILAIAALLFHGLWTSRKE 28 (284)
T ss_pred hHHHHHHHHHHHHHHccccccccc
Confidence 588999999999999999999853
No 16
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=40.49 E-value=1.7e+02 Score=29.43 Aligned_cols=49 Identities=10% Similarity=0.146 Sum_probs=32.0
Q ss_pred HHHHHhhcCCccccccCChHHHHHHHHhhCCchHHHHHHHHHHHHHHHHH
Q psy12177 76 TLQKKLQVGGYEQFTQETGTEKLIRKFKENPLVPIGCVATSAALGVGLYS 125 (163)
Q Consensus 76 q~re~~~~~~~~~~~~ET~~eKl~RK~kEnPLVpIG~laT~gaL~~Gl~s 125 (163)
+.++..|.+..++-...+++.++++.++ ||++.+-+++.+..++.|.|.
T Consensus 53 ~rl~~~G~N~l~~~~~~~~~~~~l~~f~-~~~~~iL~~aa~ls~~~~~~~ 101 (903)
T PRK15122 53 ERLQRYGPNEVAHEKPPHALVQLLQAFN-NPFIYVLMVLAAISFFTDYWL 101 (903)
T ss_pred HHHHhcCCCCCCCCCCCCHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHh
Confidence 4556666653444455678899998887 688877656655555555543
No 17
>TIGR02598 Verrucomicrobium spinosum paralogous family TIGR02598. This family consists of a paralogous family of proteins in the bacterium Verrucomicrobium spinosum. All members contain the prepilin-type N-terminal cleavage/methylation domain (TIGR02532) at the N-terminus. The mature protein would be about 150 amino acids long.
Probab=39.46 E-value=57 Score=26.81 Aligned_cols=36 Identities=22% Similarity=0.228 Sum_probs=27.5
Q ss_pred chHHHHHHHHHHHHHHHHHhh-cCChhHHHHHHHHHH
Q psy12177 107 LVPIGCVATSAALGVGLYSMK-LGDRRLSQMMMRTRV 142 (163)
Q Consensus 107 LVpIG~laT~gaL~~Gl~sfr-~Gn~~~SqKLMR~RV 142 (163)
.+.+|++++++..+.|+.... ++-+..+|++-.+||
T Consensus 8 ~vALgI~A~A~laLl~llp~gld~LR~A~Nq~aearI 44 (151)
T TIGR02598 8 VLAVGIAATVLLTLIGLLPTGLDTLRQSSNKQAEARI 44 (151)
T ss_pred HHHHHHHHHHHHHHHHHhHHhHhHHHHHHHHHHHHHH
Confidence 456788888888888887775 444446899999999
No 18
>COG4171 SapC ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=39.33 E-value=55 Score=29.31 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=26.5
Q ss_pred ccccccCChHHHHHHHHhhCCchHHHHHHHHHHHHH
Q psy12177 86 YEQFTQETGTEKLIRKFKENPLVPIGCVATSAALGV 121 (163)
Q Consensus 86 ~~~~~~ET~~eKl~RK~kEnPLVpIG~laT~gaL~~ 121 (163)
|+|+++.+..+++||+|++|-+.-.|.-+..+..+.
T Consensus 7 y~E~r~pt~~~~~Wr~Fr~d~iAmfg~y~~~~l~l~ 42 (296)
T COG4171 7 YSEKRPPTTLRTAWRKFRSDAIAMFGLYGLAGLALL 42 (296)
T ss_pred cccccCCchHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 556888899999999999998766655444444333
No 19
>PRK10527 hypothetical protein; Provisional
Probab=38.59 E-value=77 Score=24.82 Aligned_cols=29 Identities=7% Similarity=0.127 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q psy12177 115 TSAALGVGLYSMKLGDRRLSQMMMRTRVV 143 (163)
Q Consensus 115 T~gaL~~Gl~sfr~Gn~~~SqKLMR~RV~ 143 (163)
|+-.++.++++|.+++.+.-|.+++-|.+
T Consensus 28 TTPFlLLAa~cfaRsSpR~~~WL~~h~~f 56 (125)
T PRK10527 28 TTPFILLAAWCFARSSPRFHAWLLYRSWF 56 (125)
T ss_pred CcHHHHHHHHHHHcCCHHHHHHHHcCchh
Confidence 44567788899999988888888877766
No 20
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=38.07 E-value=1.3e+02 Score=21.33 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=33.0
Q ss_pred HHHHHHHhhCCchHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHH
Q psy12177 96 EKLIRKFKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQGFTVLA 151 (163)
Q Consensus 96 eKl~RK~kEnPLVpIG~laT~gaL~~Gl~sfr~Gn~~~SqKLMR~RV~AQg~TVaa 151 (163)
|.+..-+.+|.|+.. ++++|++++..+. .|.|+-|-||..-+++|.+
T Consensus 2 e~i~~vl~~ngLita--Fa~vG~~m~~S~~-------lS~~LT~GrihGSAIAI~l 48 (60)
T PF03818_consen 2 EMIEKVLTKNGLITA--FAVVGIIMWVSYW-------LSKKLTRGRIHGSAIAIVL 48 (60)
T ss_pred hHHHHHHhhCchHHH--HHHHHHHHHHHHH-------HHHHHhCCCcchHHHHHHH
Confidence 445566778888663 7888888887765 4677888888766665544
No 21
>PF08627 CRT-like: CRT-like; InterPro: IPR013936 This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT).
Probab=36.66 E-value=39 Score=27.22 Aligned_cols=65 Identities=17% Similarity=0.002 Sum_probs=33.0
Q ss_pred ccccCChHHHHHHHHh-----hCCchHHHHHHHHHHHHHHHHHh---hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12177 88 QFTQETGTEKLIRKFK-----ENPLVPIGCVATSAALGVGLYSM---KLGDRRLSQMMMRTRVVAQGFTVLALTGGLIY 158 (163)
Q Consensus 88 ~~~~ET~~eKl~RK~k-----EnPLVpIG~laT~gaL~~Gl~sf---r~Gn~~~SqKLMR~RV~AQg~TVaaLv~G~~~ 158 (163)
+..+++.++|++.+.| |+..+.+.++ +.++.|..+. ++--....|+. =..+|..+.+-+.+...+
T Consensus 33 ~i~~~~~~~k~k~~~k~s~~ke~~~L~v~~v---v~V~s~v~N~VL~K~~~~~m~NY~---fFL~QlTt~gyvpIffaV 105 (130)
T PF08627_consen 33 NIKQKSISEKIKDFLKQSYSKENFKLLVYVV---VYVVSGVINRVLYKKMTNPMKNYP---FFLNQLTTFGYVPIFFAV 105 (130)
T ss_pred cchHHHHHHHHHHHHHHhhhhcchHHHHHHH---HHHHHHHHHHHHHHHHHhhcccch---HHHHHhcccceehHHHHH
Confidence 4566778888877665 6666554333 3333333332 22112223333 245677776665554433
No 22
>PF10999 DUF2839: Protein of unknown function (DUF2839); InterPro: IPR021262 This bacterial family of unknown function appear to be restricted to Cyanobacteria.
Probab=36.07 E-value=98 Score=22.25 Aligned_cols=26 Identities=12% Similarity=0.243 Sum_probs=17.6
Q ss_pred hHHHHHHHHhhCCchHHHHHHHHHHH
Q psy12177 94 GTEKLIRKFKENPLVPIGCVATSAAL 119 (163)
Q Consensus 94 ~~eKl~RK~kEnPLVpIG~laT~gaL 119 (163)
..+.+.......|.++||.++.+.+.
T Consensus 32 q~~~~~~~ttkg~w~gig~l~~~wi~ 57 (68)
T PF10999_consen 32 QAKQFYKLTTKGPWIGIGILVLIWII 57 (68)
T ss_pred HHHHHHHHhhcccchhHHHHHHHHHH
Confidence 34556666669999999766655443
No 23
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=35.82 E-value=66 Score=23.34 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=19.2
Q ss_pred ChHHHHHHHHhhCCchHHHHHHHHHHH
Q psy12177 93 TGTEKLIRKFKENPLVPIGCVATSAAL 119 (163)
Q Consensus 93 T~~eKl~RK~kEnPLVpIG~laT~gaL 119 (163)
+.-+++.+|.+.+..+.|..+++..++
T Consensus 41 ~~d~~i~kK~k~kK~iiiS~i~s~lal 67 (84)
T PF09716_consen 41 KIDDKIEKKKKNKKKIIISTIASGLAL 67 (84)
T ss_pred hhhHHHHHHHhccchhhHHHHHHHHHH
Confidence 456888889888888877766644433
No 24
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.59 E-value=49 Score=28.47 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=24.8
Q ss_pred ccCChHHHHHHHHhhC--CchHHHHHHHHHHHHHHHHHhh
Q psy12177 90 TQETGTEKLIRKFKEN--PLVPIGCVATSAALGVGLYSMK 127 (163)
Q Consensus 90 ~~ET~~eKl~RK~kEn--PLVpIG~laT~gaL~~Gl~sfr 127 (163)
+++.-.+.+++|.||| +|+...+++..+.+++=.|.-+
T Consensus 6 ~E~qql~~ik~wwkeNGk~li~gviLg~~~lfGW~ywq~~ 45 (207)
T COG2976 6 EEQQQLEAIKDWWKENGKALIVGVILGLGGLFGWRYWQSH 45 (207)
T ss_pred hHHHHHHHHHHHHHHCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4456689999999999 4544455555555555555544
No 25
>PRK01741 cell division protein ZipA; Provisional
Probab=35.44 E-value=35 Score=31.18 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=21.3
Q ss_pred CchHHHHHHHHHHHHHHHHHhhcC
Q psy12177 106 PLVPIGCVATSAALGVGLYSMKLG 129 (163)
Q Consensus 106 PLVpIG~laT~gaL~~Gl~sfr~G 129 (163)
.|+++|++|.++.+..|+|+=||-
T Consensus 6 iliILg~lal~~Lv~hgiWsnRrE 29 (332)
T PRK01741 6 ILIILGILALVALVAHGIWSNRRE 29 (332)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhhH
Confidence 688999999999999999998754
No 26
>KOG2631|consensus
Probab=34.67 E-value=16 Score=31.92 Aligned_cols=26 Identities=23% Similarity=0.542 Sum_probs=19.9
Q ss_pred Cccccchhhhhheeee--e--cccccCccc
Q psy12177 35 QTVAPTMEEYLKTVEI--K--NFYTLGPVM 60 (163)
Q Consensus 35 ~~~~~~~~~~~~~~~~--~--~~~~~~~~~ 60 (163)
|...-.||+||.||+| | |-|-||++-
T Consensus 171 D~l~~aie~YP~tcAVLVR~HGvyvWG~TW 200 (238)
T KOG2631|consen 171 DSLKKAIELYPDTCAVLVRRHGVYVWGPTW 200 (238)
T ss_pred HHHHHHHHhCCcceEEEEecCcEEEecCcH
Confidence 3345578999999976 3 678999884
No 27
>PF09163 Form-deh_trans: Formate dehydrogenase N, transmembrane; InterPro: IPR015246 The transmembrane domain of the beta subunit of formate dehydrogenase consists of a single transmembrane helix. This domain acts as a transmembrane anchor, allowing the conduction of electrons within the protein []. ; PDB: 1KQG_B 1KQF_B.
Probab=31.62 E-value=82 Score=20.89 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=21.1
Q ss_pred hCCchHHHHHHHHHHHHHHHHHhh
Q psy12177 104 ENPLVPIGCVATSAALGVGLYSMK 127 (163)
Q Consensus 104 EnPLVpIG~laT~gaL~~Gl~sfr 127 (163)
+.++.|+|.++.++++..+++.+.
T Consensus 9 Kg~~Kpl~~~~~~~~~~~~~~Hyi 32 (44)
T PF09163_consen 9 KGVLKPLGAAGMGATAAAGFFHYI 32 (44)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHh
Confidence 378899999999999999999884
No 28
>PRK13751 putative mercuric transport protein; Provisional
Probab=30.83 E-value=1.7e+02 Score=22.93 Aligned_cols=48 Identities=17% Similarity=0.056 Sum_probs=32.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhcC-------C---hhHHHHHHHHHHHHHHHHHHHHHH
Q psy12177 105 NPLVPIGCVATSAALGVGLYSMKLG-------D---RRLSQMMMRTRVVAQGFTVLALTG 154 (163)
Q Consensus 105 nPLVpIG~laT~gaL~~Gl~sfr~G-------n---~~~SqKLMR~RV~AQg~TVaaLv~ 154 (163)
+|+-|+-++.+.+++++|.|...+. . ...++|. .|+.+-..|+.+++.
T Consensus 48 epyr~~fi~~a~~~l~~a~~~~yr~~~~C~~g~~Ca~p~~rk~--~k~~~Wi~~vlvl~~ 105 (116)
T PRK13751 48 EPYRPIFIGAALVALFFAWRRIYRPAAACKPGEVCAIPQVRAT--YKLIFWIVAALVLVA 105 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccccCCCCccCCcccchH--HHHHHHHHHHHHHHH
Confidence 5777877778888898988877432 1 2235663 778887777766654
No 29
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=29.70 E-value=1.8e+02 Score=24.58 Aligned_cols=74 Identities=15% Similarity=0.210 Sum_probs=45.1
Q ss_pred heeeeecccccCccc---cccccccchhhhhHHHHHHHhhcCCccccccCChHHHHHHHHhhCCchHHHHHHHHHHHHHH
Q psy12177 46 KTVEIKNFYTLGPVM---ANKITQQEQDELDWLTLQKKLQVGGYEQFTQETGTEKLIRKFKENPLVPIGCVATSAALGVG 122 (163)
Q Consensus 46 ~~~~~~~~~~~~~~~---~~~~~~~~~~~ldwiq~re~~~~~~~~~~~~ET~~eKl~RK~kEnPLVpIG~laT~gaL~~G 122 (163)
..|.||+||..=+-- |--.--..+.++||+-....+++.+ |.-+...-...+-.-.| .+|. ++|+=+.+.|
T Consensus 154 p~Cti~~~P~~~~hci~~a~~~~~d~~~~~~~i~~~a~~ra~~---~~i~~~~~~~~~~i~~~-iipa--i~tTnaiia~ 227 (234)
T cd01484 154 PMCTIASMPRLPEHCIEWARMLQWDDPEHIQFIFQASNERASQ---YNIRGVTYFLTKGVAGR-IIPA--VATTNAVVAG 227 (234)
T ss_pred CccccCCCCCCchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH---cCCCCcCHHHHHHHhcC-eecc--hhhHHHHHHH
Confidence 378999999863211 1111116778999999998888863 77665444444444444 4453 5666666666
Q ss_pred HHH
Q psy12177 123 LYS 125 (163)
Q Consensus 123 l~s 125 (163)
+-.
T Consensus 228 ~~~ 230 (234)
T cd01484 228 VCA 230 (234)
T ss_pred HHH
Confidence 644
No 30
>COG4760 Predicted membrane protein [Function unknown]
Probab=29.69 E-value=1.8e+02 Score=25.86 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=43.7
Q ss_pred chHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12177 107 LVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQGFTVLALTGGLIYTAY 161 (163)
Q Consensus 107 LVpIG~laT~gaL~~Gl~sfr~Gn~~~SqKLMR~RV~AQg~TVaaLv~G~~~~~y 161 (163)
++-=+.++|.++++..+..+|.|-.+-.-|+=|.=+++-+-.++.+++...+.++
T Consensus 144 ligqAvLgT~Gvf~gML~vYktGaIkvTpkF~r~v~a~~~Gvl~L~Lgn~vla~F 198 (276)
T COG4760 144 LIGQAVLGTFGVFFGMLVVYKTGAIKVTPKFTRMVVAATFGVLVLMLGNFVLAMF 198 (276)
T ss_pred eeHHHHHHHHHHHHHHHHHHhcCceeecchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444678999999999999999988888888888888877777777776666654
No 31
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=29.35 E-value=2.7e+02 Score=23.86 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=24.3
Q ss_pred HhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12177 125 SMKLGDRRLSQMMMRTRVVAQGFTVLALTGGLIYTA 160 (163)
Q Consensus 125 sfr~Gn~~~SqKLMR~RV~AQg~TVaaLv~G~~~~~ 160 (163)
.++..|.+..+|+++.-...-.+..+.++++..+.+
T Consensus 258 ~~~~~~~~~~~~~F~~s~~~~~~i~~~~~~~~~~~~ 293 (296)
T PRK04375 258 LYRKDDRKWARKLFRYSINYLTLLFVALLVDHLLLL 293 (296)
T ss_pred HhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334556777889998888877666666666655544
No 32
>COG2322 Predicted membrane protein [Function unknown]
Probab=28.89 E-value=2.8e+02 Score=23.47 Aligned_cols=44 Identities=20% Similarity=0.089 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12177 110 IGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQGFTVLALTGGLIY 158 (163)
Q Consensus 110 IG~laT~gaL~~Gl~sfr~Gn~~~SqKLMR~RV~AQg~TVaaLv~G~~~ 158 (163)
+-...+...+..|.+-.++||.+ .|.|.++-+++.+++....+.
T Consensus 51 i~~~~s~~~llag~~~Ikrg~i~-----~Hk~aMltA~~l~l~FlvlYl 94 (177)
T COG2322 51 IFNSLSFIFLLAGWRLIKRGNIE-----KHKRAMLTAFTLALVFLVLYL 94 (177)
T ss_pred HHHHHHHHHHHHHHHHHHhccHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 33456667788888888999775 366667777777766655544
No 33
>KOG0204|consensus
Probab=28.50 E-value=1.5e+02 Score=30.97 Aligned_cols=88 Identities=24% Similarity=0.310 Sum_probs=52.9
Q ss_pred CCccccchhhhhheeeeeccccc---C---------ccccccccccchhhhhHHHHHHHhhcCCccccccCChHHHHHHH
Q psy12177 34 SQTVAPTMEEYLKTVEIKNFYTL---G---------PVMANKITQQEQDELDWLTLQKKLQVGGYEQFTQETGTEKLIRK 101 (163)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~~~~~~~ldwiq~re~~~~~~~~~~~~ET~~eKl~RK 101 (163)
+++.+.+.|+--+-++=+|-..+ | .+=++.-++.+++|+. +.|+-++.+.+|+-...+|+.=+|+-
T Consensus 75 e~~~~i~~e~l~~i~~~~~~~~L~~~gGv~gL~~~LKt~~~~Gi~~~~~el~--~Rr~~fG~N~~p~k~~K~Fl~fvweA 152 (1034)
T KOG0204|consen 75 EYTLGIGAEELVKIVKEHDLKALNAYGGVEGLCKKLKTDPNEGISGEDDELE--RRRKIFGSNTYPEKPPKGFLRFVWEA 152 (1034)
T ss_pred ccccccCHHHHHHHhhccchhhhhhccCHHHHHHHhccCcccCCCCChHHHH--HHHHhcCCCCCCCCCCccHHHHHHHH
Confidence 44446666766544433333333 3 2223333444444432 45666677669999999999999999
Q ss_pred HhhCCchHHHHHHHHHHHHHHHH
Q psy12177 102 FKENPLVPIGCVATSAALGVGLY 124 (163)
Q Consensus 102 ~kEnPLVpIG~laT~gaL~~Gl~ 124 (163)
+++--|+++. ++.++.|+.|+|
T Consensus 153 ~qD~TLiIL~-vaAvvSl~lgi~ 174 (1034)
T KOG0204|consen 153 LQDVTLIILM-VAAVVSLGLGIY 174 (1034)
T ss_pred hccchHHHHH-HHHHHHHhhhhc
Confidence 9999887764 334444444444
No 34
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=27.78 E-value=69 Score=25.12 Aligned_cols=22 Identities=27% Similarity=0.225 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12177 134 SQMMMRTRVVAQGFTVLALTGGL 156 (163)
Q Consensus 134 SqKLMR~RV~AQg~TVaaLv~G~ 156 (163)
.++..|.|. +|+|+|++++.+.
T Consensus 56 ~~~~~~f~a-a~afaIisi~~~~ 77 (155)
T PF07344_consen 56 PQRRSRFRA-AQAFAIISIFVYG 77 (155)
T ss_pred cHHHHHHHH-HHHHHHHHHHHHH
Confidence 455555554 6666666655543
No 35
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=27.43 E-value=3.2e+02 Score=28.17 Aligned_cols=39 Identities=13% Similarity=0.078 Sum_probs=25.6
Q ss_pred HHHHHhhcCCccccccCChHHHHHHHHhhCCchHHHHHHH
Q psy12177 76 TLQKKLQVGGYEQFTQETGTEKLIRKFKENPLVPIGCVAT 115 (163)
Q Consensus 76 q~re~~~~~~~~~~~~ET~~eKl~RK~kEnPLVpIG~laT 115 (163)
+.|+..|.+..+.-...+++.++++.++ ||++.+-+++.
T Consensus 34 ~rl~~~G~N~l~~~~~~s~~~~~l~q~~-~~~~~iL~~aa 72 (1053)
T TIGR01523 34 HRLKEVGENRLEADSGIDAKAMLLHQVC-NAMCMVLIIAA 72 (1053)
T ss_pred HHHHHcCCCCCCCCCCCCHHHHHHHHHh-CHHHHHHHHHH
Confidence 4556666653344456789999999996 78776533333
No 36
>KOG3012|consensus
Probab=27.40 E-value=4.5e+02 Score=23.46 Aligned_cols=64 Identities=8% Similarity=-0.096 Sum_probs=42.8
Q ss_pred HHHHHhhCCchHHHHHHHHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12177 98 LIRKFKENPLVPIGCVATSAALGVGLYSMKLG-DRRLSQMMMRTRVVAQGFTVLALTGGLIYTAYQ 162 (163)
Q Consensus 98 l~RK~kEnPLVpIG~laT~gaL~~Gl~sfr~G-n~~~SqKLMR~RV~AQg~TVaaLv~G~~~~~yq 162 (163)
--++.|++|-..+-+.+ +.++..-.|++.-+ ....+-+.+=+=|..-.+.++++++...|..-+
T Consensus 74 KnQwARDDPaFlVl~s~-~l~vssi~~a~~~~ls~~g~v~~~~~vvfvdf~~vG~iiAT~~wfi~N 138 (259)
T KOG3012|consen 74 KNQWARDDPAFLVLLSL-LLVVSSIGWAYVLDLSFIGFVKFLVWVVFVDFIIVGVIIATLFWFISN 138 (259)
T ss_pred hhhhhccCchHHHHHHH-HHHHHHHHHHHHhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34589999976664333 33333334444433 344588888899999999999999988876543
No 37
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=26.08 E-value=3e+02 Score=21.05 Aligned_cols=53 Identities=13% Similarity=0.185 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHHHHHHHHhh-cCChhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Q psy12177 107 LVPIGCVATSAALGVGLYSMK-LGDRRLSQMMMRT-RVVAQGFTVLALTGGLIYTAY 161 (163)
Q Consensus 107 LVpIG~laT~gaL~~Gl~sfr-~Gn~~~SqKLMR~-RV~AQg~TVaaLv~G~~~~~y 161 (163)
.+..|++..+++++.+..-|. .+++ +-+--|+ -+.+=-+.++++++-+.|++|
T Consensus 14 vli~GiiLL~~aCIfAfidfsK~~~~--~~~~wRalSii~FI~giil~lG~~i~s~y 68 (92)
T PF05767_consen 14 VLIGGIILLIAACIFAFIDFSKNTKP--TDYTWRALSIICFILGIILTLGIVIFSMY 68 (92)
T ss_pred HHHHHHHHHHHHHHHHhhhhccCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788889999999998884 4433 3322222 233444455566666777777
No 38
>PF11240 DUF3042: Protein of unknown function (DUF3042); InterPro: IPR021402 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=25.70 E-value=91 Score=21.60 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q psy12177 108 VPIGCVATSAALGVGLYSMK 127 (163)
Q Consensus 108 VpIG~laT~gaL~~Gl~sfr 127 (163)
+.+|.++|++++..+++.|+
T Consensus 8 ~l~G~~~t~aa~a~av~~~k 27 (54)
T PF11240_consen 8 FLTGVAATLAAIAGAVFTFK 27 (54)
T ss_pred HHHhHHHHHHHHHHHHHHHH
Confidence 57899999999999999997
No 39
>KOG0860|consensus
Probab=25.13 E-value=68 Score=25.33 Aligned_cols=45 Identities=27% Similarity=0.265 Sum_probs=23.3
Q ss_pred cccchhhhhHHHHHHHhhcCCccccccCChHHHHHHH--HhhCCchHHH
Q psy12177 65 TQQEQDELDWLTLQKKLQVGGYEQFTQETGTEKLIRK--FKENPLVPIG 111 (163)
Q Consensus 65 ~~~~~~~ldwiq~re~~~~~~~~~~~~ET~~eKl~RK--~kEnPLVpIG 111 (163)
..|++..|+-++.|.|-+..+-++|+.- ..|++|| -+..+...+-
T Consensus 52 VlER~ekL~~L~drad~L~~~as~F~~~--A~klkrk~wWkn~Km~~il 98 (116)
T KOG0860|consen 52 VLERGEKLDELDDRADQLQAGASQFEKT--AVKLKRKMWWKNCKMRIIL 98 (116)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777666533333322 2333333 3444554443
No 40
>PHA03049 IMV membrane protein; Provisional
Probab=24.79 E-value=83 Score=22.88 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q psy12177 108 VPIGCVATSAALGVGLYSMK 127 (163)
Q Consensus 108 VpIG~laT~gaL~~Gl~sfr 127 (163)
..+=|.+.+|.+++|+|+=+
T Consensus 7 l~iICVaIi~lIvYgiYnkk 26 (68)
T PHA03049 7 LVIICVVIIGLIVYGIYNKK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 44558999999999999875
No 41
>PRK03427 cell division protein ZipA; Provisional
Probab=24.59 E-value=63 Score=29.50 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=21.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhc
Q psy12177 105 NPLVPIGCVATSAALGVGLYSMKL 128 (163)
Q Consensus 105 nPLVpIG~laT~gaL~~Gl~sfr~ 128 (163)
..|+++|.+|.++.|+=|+|+.|+
T Consensus 7 LiLivvGAIAIiAlL~HGlWtsRK 30 (333)
T PRK03427 7 LILIIVGAIAIIALLVHGFWTSRK 30 (333)
T ss_pred hHHHHHHHHHHHHHHHHhhhhccc
Confidence 468899999999999999999973
No 42
>PRK04335 cell division protein ZipA; Provisional
Probab=23.91 E-value=42 Score=30.31 Aligned_cols=26 Identities=35% Similarity=0.503 Sum_probs=22.2
Q ss_pred CchHHHHHHHHHHHHHHHHHhhc-CCh
Q psy12177 106 PLVPIGCVATSAALGVGLYSMKL-GDR 131 (163)
Q Consensus 106 PLVpIG~laT~gaL~~Gl~sfr~-Gn~ 131 (163)
.|+++|.+|.++.|+-|+|.-|+ |+.
T Consensus 7 vLiivGAlAI~ALL~HGlWtsrKe~~~ 33 (313)
T PRK04335 7 VLIVVGALAIAALLFHGLWTSKKEGKS 33 (313)
T ss_pred hHHHHHHHHHHHHHHhccccccccccc
Confidence 47899999999999999999974 543
No 43
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=23.60 E-value=3.9e+02 Score=27.02 Aligned_cols=35 Identities=9% Similarity=-0.030 Sum_probs=23.4
Q ss_pred HHHHHhhcCCccccccCChHHHHHHHHhhCCchHHH
Q psy12177 76 TLQKKLQVGGYEQFTQETGTEKLIRKFKENPLVPIG 111 (163)
Q Consensus 76 q~re~~~~~~~~~~~~ET~~eKl~RK~kEnPLVpIG 111 (163)
+.++..|.+..+.-...+++.++++.++ ||+..+-
T Consensus 75 ~r~~~~G~N~l~~~~~~s~~~~~~~~~~-~p~~~lL 109 (902)
T PRK10517 75 SAREQHGENELPAQKPLPWWVHLWVCYR-NPFNILL 109 (902)
T ss_pred HHHHhcCCCCCCCCCCCCHHHHHHHHHH-hHHHHHH
Confidence 4556667654344455678899999886 7777653
No 44
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=23.37 E-value=3.8e+02 Score=26.78 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=24.4
Q ss_pred HHHHHhhcCCccccccCChHHHHHHHHhhCCchHHH
Q psy12177 76 TLQKKLQVGGYEQFTQETGTEKLIRKFKENPLVPIG 111 (163)
Q Consensus 76 q~re~~~~~~~~~~~~ET~~eKl~RK~kEnPLVpIG 111 (163)
+.|+..|.+..+.-...+++.++++.++ +|+..+-
T Consensus 41 ~r~~~~G~N~l~~~~~~~~~~~~~~~~~-~p~~~iL 75 (867)
T TIGR01524 41 ERLAEFGPNQTVEEKKVPNLRLLIRAFN-NPFIYIL 75 (867)
T ss_pred HHHHhcCCCcCCCCCCCCHHHHHHHHHh-hHHHHHH
Confidence 5566667764444455678999999986 8887763
No 45
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=23.14 E-value=96 Score=22.54 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=16.7
Q ss_pred chHHHHHHHHHHHHHHHHHhh
Q psy12177 107 LVPIGCVATSAALGVGLYSMK 127 (163)
Q Consensus 107 LVpIG~laT~gaL~~Gl~sfr 127 (163)
+..+=|.+.+|++++|+|+=+
T Consensus 6 iLi~ICVaii~lIlY~iYnr~ 26 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 345558899999999999875
No 46
>PF02411 MerT: MerT mercuric transport protein; InterPro: IPR003457 MerT is an mercuric transport integral membrane protein and is responsible for transport of the Hg2+ iron from periplasmic MerP (also part of the transport system) to mercuric reductase (MerA).; GO: 0015097 mercury ion transmembrane transporter activity, 0015694 mercury ion transport, 0016020 membrane
Probab=22.69 E-value=3.7e+02 Score=20.80 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=19.9
Q ss_pred hCCchHHHHHHHHHHHHHHHHHhh
Q psy12177 104 ENPLVPIGCVATSAALGVGLYSMK 127 (163)
Q Consensus 104 EnPLVpIG~laT~gaL~~Gl~sfr 127 (163)
=+|+-|.-++.+.++|++|.|.+.
T Consensus 47 lepyRp~fi~~tl~~lg~a~~~~y 70 (116)
T PF02411_consen 47 LEPYRPYFIALTLLFLGYAFWRLY 70 (116)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 347778888889999999999985
No 47
>KOG1692|consensus
Probab=22.66 E-value=68 Score=27.56 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=29.7
Q ss_pred hhhhhHHHHHHHhhcCCccccccCChHHHHHHHHhhCCchHHH
Q psy12177 69 QDELDWLTLQKKLQVGGYEQFTQETGTEKLIRKFKENPLVPIG 111 (163)
Q Consensus 69 ~~~ldwiq~re~~~~~~~~~~~~ET~~eKl~RK~kEnPLVpIG 111 (163)
..|+.|++.|+.+-+. .+|+...|+.-|+-=++++.|+
T Consensus 145 k~EQeY~~~Rer~Hr~-----~nEntn~RVv~wsife~~vLi~ 182 (201)
T KOG1692|consen 145 KHEQEYMEARERIHRN-----TNENTNSRVVLWSIFEALVLIA 182 (201)
T ss_pred HHHHHHHHHHHHHHHH-----hhhcccceeehHHHHHHHHHHH
Confidence 4577888888888874 7788888888888877777764
No 48
>PF12351 Fig1: Ca2+ regulator and membrane fusion protein Fig1
Probab=22.37 E-value=4.3e+02 Score=21.49 Aligned_cols=63 Identities=14% Similarity=0.067 Sum_probs=33.7
Q ss_pred HHHHHHhhC---CchHHHHHHHHHHHHHHHHHhh---cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12177 97 KLIRKFKEN---PLVPIGCVATSAALGVGLYSMK---LGDRRLSQMMMRTRVVAQGFTVLALTGGLIYT 159 (163)
Q Consensus 97 Kl~RK~kEn---PLVpIG~laT~gaL~~Gl~sfr---~Gn~~~SqKLMR~RV~AQg~TVaaLv~G~~~~ 159 (163)
.+..+++++ |++++..+....+....+..+. ..-+..+..+-|.-+.+=+++++...+|+.++
T Consensus 63 ~~A~~f~~~iv~p~ll~~aiiL~~~~~lll~~~~~~~~~~P~~~~~v~~~~l~l~~~~~~l~~~~a~~q 131 (182)
T PF12351_consen 63 WLAQTFQDNIVFPYLLMAAIILFLLCFLLLAYFPGSIPVLPFPSRAVSKVALGLSFLSVLLWLVGAMWQ 131 (182)
T ss_pred HHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHccCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555 4444443333333333333332 22333455577777888888877777777654
No 49
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=21.78 E-value=1.6e+02 Score=22.47 Aligned_cols=23 Identities=4% Similarity=-0.146 Sum_probs=11.4
Q ss_pred HHHHHhhCCchHHHHHHHHHHHH
Q psy12177 98 LIRKFKENPLVPIGCVATSAALG 120 (163)
Q Consensus 98 l~RK~kEnPLVpIG~laT~gaL~ 120 (163)
..|.-+.+++--+|++++++..+
T Consensus 30 a~r~~~~~~~~~l~~~g~IG~~~ 52 (100)
T TIGR02230 30 ARKNATRSIWEGLGMFGLIGWSV 52 (100)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHH
Confidence 33333444566666655555443
No 50
>KOG1693|consensus
Probab=21.67 E-value=1.7e+02 Score=25.38 Aligned_cols=45 Identities=9% Similarity=0.013 Sum_probs=32.2
Q ss_pred hhhhHHHHHHHhhcCCccccccCChHHHHHHHHhhCCchHHHHHHHHHHH
Q psy12177 70 DELDWLTLQKKLQVGGYEQFTQETGTEKLIRKFKENPLVPIGCVATSAAL 119 (163)
Q Consensus 70 ~~ldwiq~re~~~~~~~~~~~~ET~~eKl~RK~kEnPLVpIG~laT~gaL 119 (163)
+.+++++.||..+. ...|+..+|+.-|.--..++.+++...=+.+
T Consensus 152 ~~q~y~R~RE~rn~-----~tv~st~~Rv~~~Sl~e~~~vv~iSi~Qv~i 196 (209)
T KOG1693|consen 152 DTQTYYRLREARNR-----STVESTNSRVTWWSLLEIIAVVVISIAQVFI 196 (209)
T ss_pred HHHHHHHHHHhcCc-----cchhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999998 4889999999888876666555544433333
No 51
>PF12932 Sec16: Vesicle coat trafficking protein Sec16 mid-region; InterPro: IPR024340 The yeast protein Sec16 plays a key role in the formation of coat protein II vesicles, which mediate protein transport from the endoplasmic reticulum (ER) to the Golgi apparatus []. Mammals have two isoforms of this protein - Sec16A and Sec16B. Sec16A appears to be the primary orthologue as it has the highest sequence similarity to the yeast sequence. Sec16B is involved in export of the peroxisomal membrane biogenesis factor peroxin 16 []. This entry represents the central conserved domain (CCD) of Sec16, found in all isoforms of this protein. The CCD is necessary for targeting of the protein to the ER [].; PDB: 3MZK_C.
Probab=21.20 E-value=1.2e+02 Score=22.73 Aligned_cols=26 Identities=23% Similarity=0.510 Sum_probs=16.6
Q ss_pred CccccccccccchhhhhHHHHHHHhhcC
Q psy12177 57 GPVMANKITQQEQDELDWLTLQKKLQVG 84 (163)
Q Consensus 57 ~~~~~~~~~~~~~~~ldwiq~re~~~~~ 84 (163)
||-..+| ....+-+.|+..|-+....
T Consensus 61 GPL~~~k--tkKkdV~kwl~~~i~~~~~ 86 (118)
T PF12932_consen 61 GPLVKGK--TKKKDVIKWLEEKIEELER 86 (118)
T ss_dssp SSTTSTT----HHHHHHHHHHHHHHH--
T ss_pred CCcCCCC--CCHHHHHHHHHHHHHHhhc
Confidence 6665554 7788889999988776643
No 52
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=20.66 E-value=85 Score=27.16 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=28.5
Q ss_pred cccchhhhhHHHHHHHhhcCCccccccC--Ch-HHHHHHHHhhCCchHHH
Q psy12177 65 TQQEQDELDWLTLQKKLQVGGYEQFTQE--TG-TEKLIRKFKENPLVPIG 111 (163)
Q Consensus 65 ~~~~~~~ldwiq~re~~~~~~~~~~~~E--T~-~eKl~RK~kEnPLVpIG 111 (163)
..+.++..+|++.+|.+... ++.. +. ..-+-..+++|||.+=.
T Consensus 24 ~~~~~~~r~~l~~qe~~s~~----l~~~~~~~~~~~~~~~~~~npl~~~d 69 (212)
T PRK13730 24 NVNTPENRQFLKQQENLSRQ----LREKPDHQLKAWAEKQVLENPLQRSD 69 (212)
T ss_pred ccCCchHHHHHHHHHHHHHH----HHcCCChHHHHHHHHhhhcCCCCchh
Confidence 35667788999999988764 4433 22 22244578888987743
No 53
>PF13997 YqjK: YqjK-like protein
Probab=20.46 E-value=90 Score=22.16 Aligned_cols=20 Identities=15% Similarity=0.414 Sum_probs=11.9
Q ss_pred HHHHHH---HHhhCCchHHHHHH
Q psy12177 95 TEKLIR---KFKENPLVPIGCVA 114 (163)
Q Consensus 95 ~eKl~R---K~kEnPLVpIG~la 114 (163)
.||-+. .+|.+|.+..|.++
T Consensus 26 ~Dr~w~~l~~lr~~~~l~~g~~a 48 (73)
T PF13997_consen 26 YDRGWQTLRSLRRHPILGSGVLA 48 (73)
T ss_pred HhhHHHHHHHHHHhHHHHHHHHH
Confidence 455555 57777776555443
No 54
>TIGR03647 Na_symport_sm probable solute:sodium symporter small subunit. Members of this family are highly hydrophobic bacterial proteins of about 90 amino acids in length. Members usually are found immediately upstream (sometimes fused to) a member of the solute:sodium symporter family, and therefore are a putative sodium:solute symporter small subunit. Members tend to be found in aquatic species, especially those from marine or other high salt environments.
Probab=20.24 E-value=1.8e+02 Score=21.07 Aligned_cols=59 Identities=10% Similarity=-0.023 Sum_probs=37.3
Q ss_pred hhCCchHHHHHHHHHHHHHHHHHhhcCChh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12177 103 KENPLVPIGCVATSAALGVGLYSMKLGDRR---LSQMMMRTRVVAQGFTVLALTGGLIYTAY 161 (163)
Q Consensus 103 kEnPLVpIG~laT~gaL~~Gl~sfr~Gn~~---~SqKLMR~RV~AQg~TVaaLv~G~~~~~y 161 (163)
|+|.-+...++..|.++.+|.--+.....+ -...=..+=+++||..++.+++-.+|...
T Consensus 4 r~n~~li~~lL~iWf~vsfg~~~lf~~~Ln~~~~~GfPlgfw~aaQGsi~~fviLi~~Ya~~ 65 (77)
T TIGR03647 4 RANLRLIAVLLAIWFVVSFGAGILFADELNSFTFFGFPLGFWFAQQGSIYVFVVLIFVYAWR 65 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCeeCCCChHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344445667788888888886442221111 11222466678999999999888887654
No 55
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=20.24 E-value=2.4e+02 Score=20.66 Aligned_cols=61 Identities=11% Similarity=0.053 Sum_probs=38.6
Q ss_pred HHhhCCchHHHHHHHHHHHHHHH-HHhhcC-C-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12177 101 KFKENPLVPIGCVATSAALGVGL-YSMKLG-D-RRLSQMMMRTRVVAQGFTVLALTGGLIYTAY 161 (163)
Q Consensus 101 K~kEnPLVpIG~laT~gaL~~Gl-~sfr~G-n-~~~SqKLMR~RV~AQg~TVaaLv~G~~~~~y 161 (163)
.-|+|.-....+++.|.+..+|. .-|.+- | .+-.-.=+.+=+++||..++.+++-.+|...
T Consensus 6 yWr~n~rl~~~lL~iW~vvsfg~~~lfa~~Ln~~~~~GfPlgfw~aaQGsi~~fviLi~~Ya~~ 69 (81)
T PF13937_consen 6 YWRKNLRLIAILLAIWFVVSFGVGILFADELNQITFGGFPLGFWFAAQGSIIVFVILIFVYAWR 69 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeCCCChHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34555556777889999988887 333311 1 1111122456678999999888887777654
Done!