Query psy12177
Match_columns 163
No_of_seqs 144 out of 394
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 20:39:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lon_A HIG1 domain family memb 99.9 3E-29 1E-33 187.4 0.0 77 87-163 10-87 (99)
2 2lom_A HIG1 domain family memb 99.9 1.2E-28 4.1E-33 182.3 0.0 73 91-163 13-86 (93)
3 3arc_Y Protein YCF12; PSII, me 30.4 64 0.0022 19.0 3.4 23 108-130 6-28 (29)
4 2lx0_A Membrane fusion protein 20.1 1.1E+02 0.0039 18.1 3.1 20 108-127 8-27 (32)
5 2ks1_B Epidermal growth factor 16.7 1.2E+02 0.0042 19.0 3.0 6 124-129 33-38 (44)
6 2d11_E Na(+)/H(+) exchange reg 14.7 55 0.0019 19.3 0.8 18 64-81 8-25 (28)
7 2l2t_A Receptor tyrosine-prote 14.7 1.5E+02 0.0052 18.6 3.0 6 124-129 32-37 (44)
8 2zxe_A Na, K-ATPase alpha subu 13.6 6.8E+02 0.023 23.9 8.5 41 76-117 75-115 (1028)
9 3bz1_y Protein YCF12; electron 13.6 2E+02 0.007 18.5 3.4 24 107-130 22-45 (46)
10 3kp9_A Vkorc1/thioredoxin doma 12.6 2.4E+02 0.0081 23.4 4.5 21 106-126 71-91 (291)
No 1
>2lon_A HIG1 domain family member 1B; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=99.90 E-value=3e-29 Score=187.40 Aligned_cols=77 Identities=34% Similarity=0.518 Sum_probs=73.2
Q ss_pred cccccCChHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHhh-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy12177 87 EQFTQETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMK-LGDRRLSQMMMRTRVVAQGFTVLALTGGLIYTAYQT 163 (163)
Q Consensus 87 ~~~~~ET~~eKl~RK~kEnPLVpIG~laT~gaL~~Gl~sfr-~Gn~~~SqKLMR~RV~AQg~TVaaLv~G~~~~~yq~ 163 (163)
|++++||++||++||++||||+||||++++++|++|+|+|+ +||.++||||||+||+||||||++|++|++|++|+.
T Consensus 10 ~~~~ees~~~K~~rk~ke~PlvpIg~l~~~~vl~~Gl~~~~~rG~~~~Sqklmr~RV~AQg~tV~al~~g~~ysm~~~ 87 (99)
T 2lon_A 10 PPDDEDCVSEKLLRKTRESPLVPIGLGGCLVVAAYRIYRLRSRGSTKMSIHLIHTRVAAQACAVGAIMLGAVYTMYSD 87 (99)
Confidence 45777999999999999999999999999999999999995 999999999999999999999999999999999973
No 2
>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=99.90 E-value=1.2e-28 Score=182.33 Aligned_cols=73 Identities=42% Similarity=0.694 Sum_probs=70.8
Q ss_pred cCChHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHhh-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy12177 91 QETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMK-LGDRRLSQMMMRTRVVAQGFTVLALTGGLIYTAYQT 163 (163)
Q Consensus 91 ~ET~~eKl~RK~kEnPLVpIG~laT~gaL~~Gl~sfr-~Gn~~~SqKLMR~RV~AQg~TVaaLv~G~~~~~yq~ 163 (163)
+||++||++||++||||+||||++|++++++|+|+|+ +||.++||||||+||+||||||++|++|++|++|+.
T Consensus 13 ~e~~~~K~~rk~ke~PlvpIg~~~~~~vl~~Gl~~~~~rG~~~~sqklmr~RV~aQg~tV~al~~g~~ys~~~~ 86 (93)
T 2lom_A 13 EEDQGSKLIRKAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQGFVVGAMTVGMGYSMYRE 86 (93)
Confidence 6899999999999999999999999999999999997 899999999999999999999999999999999973
No 3
>3arc_Y Protein YCF12; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3a0b_Y* 3a0h_Y*
Probab=30.45 E-value=64 Score=19.00 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCC
Q psy12177 108 VPIGCVATSAALGVGLYSMKLGD 130 (163)
Q Consensus 108 VpIG~laT~gaL~~Gl~sfr~Gn 130 (163)
..++....+|=+...+..+|+||
T Consensus 6 ~~l~lIv~aGP~VI~lLa~r~Gn 28 (29)
T 3arc_Y 6 TMIAMIGIAGPMIIFLLAVRRGN 28 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhcCChheeehhhhcCC
Confidence 45566777788888888999987
No 4
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=20.14 E-value=1.1e+02 Score=18.14 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q psy12177 108 VPIGCVATSAALGVGLYSMK 127 (163)
Q Consensus 108 VpIG~laT~gaL~~Gl~sfr 127 (163)
|+.|+.+....|..|.|-|+
T Consensus 8 viaglvalltflafgfwlfk 27 (32)
T 2lx0_A 8 VIAGLVALLTFLAFGFWLFK 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46677777888888888775
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=16.71 E-value=1.2e+02 Score=18.99 Aligned_cols=6 Identities=17% Similarity=0.058 Sum_probs=2.5
Q ss_pred HHhhcC
Q psy12177 124 YSMKLG 129 (163)
Q Consensus 124 ~sfr~G 129 (163)
+.+|+.
T Consensus 33 ~~~RRr 38 (44)
T 2ks1_B 33 LFMRRR 38 (44)
T ss_dssp HHHHTT
T ss_pred HHhhhh
Confidence 334443
No 6
>2d11_E Na(+)/H(+) exchange regulatory cofactor NHE-RF2; protein-peptide complex, cell adhesion; 2.81A {Mus musculus}
Probab=14.75 E-value=55 Score=19.26 Aligned_cols=18 Identities=11% Similarity=0.372 Sum_probs=13.6
Q ss_pred ccccchhhhhHHHHHHHh
Q psy12177 64 ITQQEQDELDWLTLQKKL 81 (163)
Q Consensus 64 ~~~~~~~~ldwiq~re~~ 81 (163)
-.+.+++.+||.+.+|-+
T Consensus 8 R~~krap~MDw~kk~eif 25 (28)
T 2d11_E 8 RVNKRAPQMDWNRKREIF 25 (28)
T ss_pred cccccCCcccHHHHHHHH
Confidence 356788999998877654
No 7
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=14.72 E-value=1.5e+02 Score=18.65 Aligned_cols=6 Identities=0% Similarity=-0.108 Sum_probs=2.4
Q ss_pred HHhhcC
Q psy12177 124 YSMKLG 129 (163)
Q Consensus 124 ~sfr~G 129 (163)
+.+|++
T Consensus 32 ~~~RRR 37 (44)
T 2l2t_A 32 VYVRRK 37 (44)
T ss_dssp HHHHTT
T ss_pred HHhhhh
Confidence 333443
No 8
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=13.62 E-value=6.8e+02 Score=23.94 Aligned_cols=41 Identities=5% Similarity=-0.069 Sum_probs=23.8
Q ss_pred HHHHHhhcCCccccccCChHHHHHHHHhhCCchHHHHHHHHH
Q psy12177 76 TLQKKLQVGGYEQFTQETGTEKLIRKFKENPLVPIGCVATSA 117 (163)
Q Consensus 76 q~re~~~~~~~~~~~~ET~~eKl~RK~kEnPLVpIG~laT~g 117 (163)
+.++..+.+..+.-...+++.++++.++ +|+..+-.++.+.
T Consensus 75 ~r~~~~G~N~l~~~~~~~~~~~~~~~~~-~~~~~iL~~aa~l 115 (1028)
T 2zxe_A 75 EILARDGPNSLTPPPTTPEWIKFCRQLF-GGFSILLWIGAIL 115 (1028)
T ss_dssp HHHHHHCCSCCCCCCCCCHHHHHHTTTT-STHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCCCCCCHHHHHHHHHH-hHHHHHHHHHHHH
Confidence 4555666653333345678888888765 6776654333333
No 9
>3bz1_y Protein YCF12; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 3bz2_y* 3kzi_y* 3prq_y* 3prr_y*
Probab=13.60 E-value=2e+02 Score=18.48 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=18.4
Q ss_pred chHHHHHHHHHHHHHHHHHhhcCC
Q psy12177 107 LVPIGCVATSAALGVGLYSMKLGD 130 (163)
Q Consensus 107 LVpIG~laT~gaL~~Gl~sfr~Gn 130 (163)
|..++....+|=+...+.++|+||
T Consensus 22 L~~LalIv~aGPlVI~LLa~R~GN 45 (46)
T 3bz1_y 22 LTMIAMIGIAGPMIIFLLAVRRGN 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcccHHhhhHHhhcCC
Confidence 445666777777888888889887
No 10
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=12.64 E-value=2.4e+02 Score=23.38 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=13.8
Q ss_pred CchHHHHHHHHHHHHHHHHHh
Q psy12177 106 PLVPIGCVATSAALGVGLYSM 126 (163)
Q Consensus 106 PLVpIG~laT~gaL~~Gl~sf 126 (163)
|+-.+|+++-.+++..|+..+
T Consensus 71 P~~~~G~~~y~~v~~l~~~~~ 91 (291)
T 3kp9_A 71 PTAAVGLLGFLGVLALAVLPD 91 (291)
T ss_dssp EHHHHHHHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHHHHHHHHHHHHh
Confidence 677777777777777766444
Done!