Query psy12177
Match_columns 163
No_of_seqs 144 out of 394
Neff 3.6
Searched_HMMs 13730
Date Fri Aug 16 20:39:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12177.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12177hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wpga4 f.33.1.1 (A:1-124,A:24 54.6 6.3 0.00046 32.0 4.5 46 76-122 31-76 (472)
2 d2pila_ d.24.1.1 (A:) Pilin Gc 25.8 47 0.0034 20.8 4.4 18 107-124 7-24 (158)
3 d1kqfb2 f.23.22.1 (B:246-290) 23.6 44 0.0032 19.9 3.6 23 105-127 10-32 (45)
4 d1ppjd2 f.23.11.1 (D:196-241) 18.5 75 0.0055 18.6 3.9 23 139-161 6-28 (46)
5 d2e74g1 f.23.26.1 (G:9-35) Pet 13.7 58 0.0042 17.4 2.1 13 150-162 7-19 (27)
6 d2f5tx2 d.136.1.5 (X:110-246) 13.0 27 0.002 25.1 0.8 22 1-22 85-106 (137)
7 d3cx5d2 f.23.11.1 (D:261-307) 12.3 1.3E+02 0.0093 17.8 3.7 22 139-160 6-27 (47)
8 d2axtj1 f.23.32.1 (J:7-40) Pho 12.2 40 0.0029 19.2 1.2 10 115-124 18-27 (34)
9 d1kr4a_ d.58.5.2 (A:) Hypothet 11.7 49 0.0036 22.2 1.8 66 41-106 29-107 (110)
10 d2bs2c1 f.21.2.1 (C:1-254) Fum 11.1 2.7E+02 0.019 20.6 6.3 49 108-156 172-225 (254)
No 1
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=54.55 E-value=6.3 Score=32.00 Aligned_cols=46 Identities=17% Similarity=0.107 Sum_probs=31.7
Q ss_pred HHHHHhhcCCccccccCChHHHHHHHHhhCCchHHHHHHHHHHHHHH
Q psy12177 76 TLQKKLQVGGYEQFTQETGTEKLIRKFKENPLVPIGCVATSAALGVG 122 (163)
Q Consensus 76 q~re~~~~~~~~~~~~ET~~eKl~RK~kEnPLVpIG~laT~gaL~~G 122 (163)
+.|+..|.+..++-...++++++++.++ +|+..|-+++.+..++.|
T Consensus 31 ~r~~~~G~N~l~~~~~~s~~~~~~~~~~-~~~~~iL~~aa~ls~~~~ 76 (472)
T d1wpga4 31 RHLEKYGHNELPAEEGKSLWELVIEQFE-DLLVRILLLAACISFVLA 76 (472)
T ss_dssp HHHHHSCCSSCCCCCCCCHHHHHHHHTC-SHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCCCCCCHHHHHHHHHh-CHHHHHHHHHHHHHHHHH
Confidence 5566667665677788999999999986 788777544444444433
No 2
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=25.85 E-value=47 Score=20.84 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=8.8
Q ss_pred chHHHHHHHHHHHHHHHH
Q psy12177 107 LVPIGCVATSAALGVGLY 124 (163)
Q Consensus 107 LVpIG~laT~gaL~~Gl~ 124 (163)
+|.|++++..+++..=.|
T Consensus 7 lVViaIIgILaaia~P~~ 24 (158)
T d2pila_ 7 MIVIAIVGILAAVALPAY 24 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555544433
No 3
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=23.61 E-value=44 Score=19.91 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=20.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHhh
Q psy12177 105 NPLVPIGCVATSAALGVGLYSMK 127 (163)
Q Consensus 105 nPLVpIG~laT~gaL~~Gl~sfr 127 (163)
..+.|+|.++.+++...|++...
T Consensus 10 gv~Kpl~~~~~~~~~~~~~fHYv 32 (45)
T d1kqfb2 10 GALKPLAAAGFIATFAGLIFHYI 32 (45)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhhh
Confidence 67889999999999999999884
No 4
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=18.53 E-value=75 Score=18.64 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy12177 139 RTRVVAQGFTVLALTGGLIYTAY 161 (163)
Q Consensus 139 R~RV~AQg~TVaaLv~G~~~~~y 161 (163)
|-|+++..+.+..++.++.|...
T Consensus 6 RK~mG~Kv~~~l~~l~~l~yy~K 28 (46)
T d1ppjd2 6 RKRMGLKMLLMMGLLLPLVYAMK 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888877776553
No 5
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=13.73 E-value=58 Score=17.45 Aligned_cols=13 Identities=62% Similarity=1.058 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhh
Q psy12177 150 LALTGGLIYTAYQ 162 (163)
Q Consensus 150 aaLv~G~~~~~yq 162 (163)
++-++|++|..||
T Consensus 7 ~~tl~glf~aayq 19 (27)
T d2e74g1 7 FATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445566666665
No 6
>d2f5tx2 d.136.1.5 (X:110-246) Transcriptional regulator TrmB {Thermococcus litoralis [TaxId: 2265]}
Probab=12.99 E-value=27 Score=25.12 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=16.6
Q ss_pred CCCcceeeeeeeehhcCCCCcc
Q psy12177 1 MFQGKLVVADMHVQMHAPGLVS 22 (163)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (163)
|++||.|+.=-.+..++|||-|
T Consensus 85 m~DGkeV~tIQN~~F~p~~PPS 106 (137)
T d2f5tx2 85 MTDGKEVVTIQNATFDSIGPPS 106 (137)
T ss_dssp EETTTEEEEETTTTTCSSSCCE
T ss_pred ccCCcEEEEEeeccccCCCCCc
Confidence 6788888876677777777765
No 7
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.33 E-value=1.3e+02 Score=17.79 Aligned_cols=22 Identities=18% Similarity=0.021 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy12177 139 RTRVVAQGFTVLALTGGLIYTA 160 (163)
Q Consensus 139 R~RV~AQg~TVaaLv~G~~~~~ 160 (163)
|-|+++..+.+..++.++.+..
T Consensus 6 RK~mg~K~~~i~s~l~~~~~y~ 27 (47)
T d3cx5d2 6 RKRLGLKTVIILSSLYLLSIWV 27 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888887766543
No 8
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.19 E-value=40 Score=19.15 Aligned_cols=10 Identities=20% Similarity=0.222 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q psy12177 115 TSAALGVGLY 124 (163)
Q Consensus 115 T~gaL~~Gl~ 124 (163)
+++.+.+|.|
T Consensus 18 ~vG~FfYGsY 27 (34)
T d2axtj1 18 IVGLFFYGAY 27 (34)
T ss_dssp HHHHHHHHTT
T ss_pred heeeeeeeee
Confidence 3334444433
No 9
>d1kr4a_ d.58.5.2 (A:) Hypothetical protein TM1056 {Thermotoga maritima [TaxId: 2336]}
Probab=11.73 E-value=49 Score=22.24 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=40.1
Q ss_pred hhhhhhee----eeeccccc-Ccccccc-------cccc-chhhhhHHHHHHHhhcCCccccccCChHHHHHHHHhhCC
Q psy12177 41 MEEYLKTV----EIKNFYTL-GPVMANK-------ITQQ-EQDELDWLTLQKKLQVGGYEQFTQETGTEKLIRKFKENP 106 (163)
Q Consensus 41 ~~~~~~~~----~~~~~~~~-~~~~~~~-------~~~~-~~~~ldwiq~re~~~~~~~~~~~~ET~~eKl~RK~kEnP 106 (163)
+|.-++-| .|+.+|-| |+.-... .+.+ .+.-.++++..-.+.....-.+..+...+...+|++++-
T Consensus 29 v~~kLaACvni~~i~S~Y~W~g~i~~~~E~~l~iKT~~~~~~~l~~~I~~~HpYevPeIi~~~~~~~~~~Y~~Wv~~~~ 107 (110)
T d1kr4a_ 29 LEKRLIACFNAFEIRSGYWWKGEIVQDKEWAAIFKTTEEKEKELYEELRKLHPYETPAIFTLKVENILTEYMNWLRESV 107 (110)
T ss_dssp HHTTSCSEEEEEEEEEEEEETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHCSSSSCCEEEECCCCEEHHHHHHHHHHT
T ss_pred HHcCeEEEEEeecccEEeeehhheeeceEEEEEEeecHHHHHHHHHHHHhcCCCCCCEEEEEEcccCCHHHHHHHHHhc
Confidence 45556666 79999999 8654222 2233 344457777766665431112344556788999988764
No 10
>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]}
Probab=11.09 E-value=2.7e+02 Score=20.61 Aligned_cols=49 Identities=16% Similarity=0.121 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHhh---cC-ChhHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy12177 108 VPIGCVATSAALGVGLYSMK---LG-DRRLSQMM-MRTRVVAQGFTVLALTGGL 156 (163)
Q Consensus 108 VpIG~laT~gaL~~Gl~sfr---~G-n~~~SqKL-MR~RV~AQg~TVaaLv~G~ 156 (163)
-.+++++++.=+..|+|++. +- +..++++. -++|..+-.++++.+++|.
T Consensus 172 Y~l~l~av~lH~~~Gl~s~~~~wG~~~~~~~~~~R~~~~~~~~~l~~~~i~lG~ 225 (254)
T d2bs2c1 172 YLVLLFAVELHGSVGLYRLAVKWGWFDGETPDKTRANLKKLKTLMSAFLIVLGL 225 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhccCCcchHhHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888889999984 22 33333333 2345566666665555554
Done!