RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12177
         (163 letters)



>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR
           {Homo sapiens}
          Length = 93

 Score =  108 bits (271), Expect = 1e-31
 Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 89  FTQETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMKL-GDRRLSQMMMRTRVVAQGF 147
             +E    KLIRK KE P VP+G    +A +  GLY +K  G+ ++S  ++  RV AQGF
Sbjct: 11  SYEEDQGSKLIRKAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQGF 70

Query: 148 TVLALTGGLIYTAYQ 162
            V A+T G+ Y+ Y+
Sbjct: 71  VVGAMTVGMGYSMYR 85


>2lon_A HIG1 domain family member 1B; membrane protein, helical bundle; NMR
           {Homo sapiens}
          Length = 99

 Score =  102 bits (255), Expect = 3e-29
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 89  FTQETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMKL-GDRRLSQMMMRTRVVAQGF 147
             ++  +EKL+RK +E+PLVPIG           +Y ++  G  ++S  ++ TRV AQ  
Sbjct: 12  DDEDCVSEKLLRKTRESPLVPIGLGGCLVVAAYRIYRLRSRGSTKMSIHLIHTRVAAQAC 71

Query: 148 TVLALTGGLIYTAYQ 162
            V A+  G +YT Y 
Sbjct: 72  AVGAIMLGAVYTMYS 86


>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase;
           2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X
           2q1c_X 2q1d_X 3bqb_A
          Length = 293

 Score = 30.8 bits (70), Expect = 0.14
 Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 17/94 (18%)

Query: 51  KNFYT---LGPVMANKITQQEQDELDWLTLQKKLQVGGYEQFTQETGTEKLIRKFKE--- 104
           K +      GPV+   +T  E      L +  K+   G   F     T K+ RK +E   
Sbjct: 182 KIYAGCCAFGPVI---VTSDEIKNPYSLDITLKIVREGRVFFEGSVNTNKMRRKIEEQIQ 238

Query: 105 -----NPLVPIGCV-ATSAALGVGL-YSMKLGDR 131
                NP+   G +  T  A+  G    +K  D 
Sbjct: 239 YLIRDNPIPD-GTILTTGTAIVPGRDKGLKDEDI 271


>1dki_A Pyrogenic exotoxin B zymogen; cysteine protease, papain-like; 1.60A
           {Streptococcus pyogenes} SCOP: d.3.1.1 PDB: 1pvj_A*
          Length = 371

 Score = 26.3 bits (57), Expect = 5.2
 Identities = 15/78 (19%), Positives = 22/78 (28%)

Query: 41  MEEYLKTVEIKNFYTLGPVMANKITQQEQDELDWLTLQKKLQVGGYEQFTQETGTEKLIR 100
           ME Y++ ++             +I Q     L         Q   Y   T      K   
Sbjct: 94  MESYVEQIKENKKLDSTYAGTAEIKQPVVKSLLDSKGIHYNQGNPYNLLTPVIEKVKPGE 153

Query: 101 KFKENPLVPIGCVATSAA 118
           +         G VAT+ A
Sbjct: 154 QSFVGQHAATGSVATATA 171


>4d8b_A Streptopain; papain fold, cysteine protease, secreted, hydrolase;
           1.06A {Streptococcus pyogenes} PDB: 4d8e_A* 4d8i_A*
           2uzj_A* 2jtc_A
          Length = 261

 Score = 25.8 bits (56), Expect = 6.9
 Identities = 10/37 (27%), Positives = 12/37 (32%)

Query: 82  QVGGYEQFTQETGTEKLIRKFKENPLVPIGCVATSAA 118
           Q   Y   T      K   +         GCVAT+ A
Sbjct: 17  QGNPYNLLTPVIEKVKPGEQSFVGQHAATGCVATATA 53


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,383,541
Number of extensions: 131275
Number of successful extensions: 288
Number of sequences better than 10.0: 1
Number of HSP's gapped: 286
Number of HSP's successfully gapped: 6
Length of query: 163
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 77
Effective length of database: 4,300,587
Effective search space: 331145199
Effective search space used: 331145199
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)