BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1218
(136 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RAS0|ACADS_PONAB Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Pongo
abelii GN=ACADS PE=2 SV=1
Length = 412
Score = 103 bits (257), Expect = 3e-22, Method: Composition-based stats.
Identities = 47/57 (82%), Positives = 52/57 (91%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
MG LGL+ ++VPE+LGG GLDYLAYAIA EEISRGCAS GVIMSVNNSLYLGP+LKF
Sbjct: 74 MGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKF 130
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/26 (88%), Positives = 25/26 (96%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGN 134
+GCAS GVIMSVNNSLYLGPILKFG+
Sbjct: 107 RGCASTGVIMSVNNSLYLGPILKFGS 132
>sp|P16219|ACADS_HUMAN Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo
sapiens GN=ACADS PE=1 SV=1
Length = 412
Score = 103 bits (257), Expect = 3e-22, Method: Composition-based stats.
Identities = 47/57 (82%), Positives = 52/57 (91%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
MG LGL+ ++VPE+LGG GLDYLAYAIA EEISRGCAS GVIMSVNNSLYLGP+LKF
Sbjct: 74 MGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKF 130
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/26 (88%), Positives = 25/26 (96%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGN 134
+GCAS GVIMSVNNSLYLGPILKFG+
Sbjct: 107 RGCASTGVIMSVNNSLYLGPILKFGS 132
>sp|Q3ZBF6|ACADS_BOVIN Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos
taurus GN=ACADS PE=2 SV=1
Length = 412
Score = 103 bits (257), Expect = 4e-22, Method: Composition-based stats.
Identities = 47/57 (82%), Positives = 51/57 (89%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
MGELGLM + VPE+L G GLDYLAY+IA EEISRGCAS GVIMSVNNSLYLGP+LKF
Sbjct: 74 MGELGLMAMNVPEELSGAGLDYLAYSIAMEEISRGCASTGVIMSVNNSLYLGPILKF 130
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/25 (92%), Positives = 24/25 (96%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFG 133
+GCAS GVIMSVNNSLYLGPILKFG
Sbjct: 107 RGCASTGVIMSVNNSLYLGPILKFG 131
>sp|P15651|ACADS_RAT Short-chain specific acyl-CoA dehydrogenase, mitochondrial
OS=Rattus norvegicus GN=Acads PE=1 SV=2
Length = 412
Score = 102 bits (254), Expect = 7e-22, Method: Composition-based stats.
Identities = 46/57 (80%), Positives = 52/57 (91%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
MGELGL+ ++VPE+L G GLDYLAY+IA EEISRGCAS GVIMSVNNSLYLGP+LKF
Sbjct: 74 MGELGLLAMDVPEELSGAGLDYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKF 130
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/27 (85%), Positives = 26/27 (96%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGNA 135
+GCAS GVIMSVNNSLYLGPILKFG++
Sbjct: 107 RGCASTGVIMSVNNSLYLGPILKFGSS 133
>sp|P79273|ACADS_PIG Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Sus
scrofa GN=ACADS PE=2 SV=1
Length = 413
Score = 100 bits (250), Expect = 2e-21, Method: Composition-based stats.
Identities = 46/57 (80%), Positives = 50/57 (87%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
MGELGLM ++VPE+L G GLDYLAY IA EEISRGCAS GVIMSVNN LYLGP+LKF
Sbjct: 74 MGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVIMSVNNFLYLGPILKF 130
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/26 (84%), Positives = 24/26 (92%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGN 134
+GCAS GVIMSVNN LYLGPILKFG+
Sbjct: 107 RGCASTGVIMSVNNFLYLGPILKFGS 132
>sp|Q07417|ACADS_MOUSE Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus
musculus GN=Acads PE=2 SV=2
Length = 412
Score = 100 bits (248), Expect = 3e-21, Method: Composition-based stats.
Identities = 45/57 (78%), Positives = 51/57 (89%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
MGELGL+ ++VPE+L G GLDYLAY+IA EEISR CAS GVIMSVNNSLYLGP+LKF
Sbjct: 74 MGELGLLAMDVPEELSGAGLDYLAYSIALEEISRACASTGVIMSVNNSLYLGPILKF 130
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/27 (85%), Positives = 25/27 (92%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGNA 135
+ CAS GVIMSVNNSLYLGPILKFG+A
Sbjct: 107 RACASTGVIMSVNNSLYLGPILKFGSA 133
>sp|P45867|ACDA_BACSU Acyl-CoA dehydrogenase OS=Bacillus subtilis (strain 168) GN=acdA
PE=2 SV=1
Length = 379
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 37/57 (64%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
M LGL G+ PED GG G DYLAY IA EE+S+ CAS GV +S + SL PL F
Sbjct: 45 MANLGLTGIPWPEDYGGIGSDYLAYVIAVEELSKVCASTGVTLSAHISLCSWPLFAF 101
>sp|P45857|ACDB_BACSU Acyl-CoA dehydrogenase OS=Bacillus subtilis (strain 168) GN=mmgC
PE=2 SV=3
Length = 379
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFR 60
MG+ GLMG+ VPE GG G D ++Y +A EISR A+ GVI+SV+ S+ P+L F
Sbjct: 43 MGKHGLMGIPVPEQYGGAGADVVSYILAIHEISRISAAVGVILSVHTSVGTNPILYFGNE 102
Query: 61 PMLLKLV 67
+K +
Sbjct: 103 EQKMKYI 109
>sp|O34421|ACDC_BACSU Probable acyl-CoA dehydrogenase YngJ OS=Bacillus subtilis (strain
168) GN=yngJ PE=3 SV=1
Length = 380
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 37/57 (64%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
MGELGLMG+ PE+ GG+G D ++YA+A EE+ + C S G+ + SL PL F
Sbjct: 45 MGELGLMGIPFPEEYGGSGGDTISYALAVEEVGKACGSTGLSYAAAVSLGASPLYYF 101
>sp|P52042|ACDS_CLOAB Acyl-CoA dehydrogenase, short-chain specific OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=bcd PE=3 SV=1
Length = 379
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSL 49
MG+ G+MG+ ++ GG G D L+Y IA EE+S+ C + GVI+S + SL
Sbjct: 45 MGQYGMMGIPFSKEYGGAGGDVLSYIIAVEELSKVCGTTGVILSAHTSL 93
>sp|P12007|IVD_RAT Isovaleryl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus
GN=Ivd PE=1 SV=2
Length = 424
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLL----- 55
+G LG++G+ P GG+GL YL + + EEISR A+ G+ +++L + ++
Sbjct: 85 LGSLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASAAVGLSYGAHSNLCINQIVRNGNE 144
Query: 56 --KFDFRPMLLKLVFHGTLVCHE 76
K + P L+ F G L E
Sbjct: 145 AQKEKYLPKLISGEFIGALAMSE 167
>sp|O32176|FADE_BACSU Probable acyl-CoA dehydrogenase OS=Bacillus subtilis (strain 168)
GN=fadE PE=2 SV=1
Length = 594
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 2 GELGLMGVEVPEDLGGTGLDYLAYAIATEEISRG 35
GELGL+G +VPE+ GG GLD ++ A+ TE+ SR
Sbjct: 72 GELGLLGADVPEEYGGLGLDKISSALITEKFSRA 105
>sp|C3UVB0|ACD_DESML Glutaryl-CoA dehydrogenase OS=Desulfococcus multivorans GN=Acd
PE=1 SV=1
Length = 389
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 1 MGELGLMGVEVPEDLGGTGLD--YLAYAIATEEISRGCASCGVIMSV 45
MGELG G +PE+ GG G+D +LA I TEEI+RG ++ V +++
Sbjct: 46 MGELGFFGTVIPEEYGGEGMDQGWLAAMIVTEEIARGSSALRVQLNM 92
>sp|Q9FS88|IVD1_SOLTU Isovaleryl-CoA dehydrogenase 1, mitochondrial OS=Solanum tuberosum
GN=IVD1 PE=2 SV=1
Length = 412
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLK 56
MG+ L G+ PE+ GG L YL + IA EEISR + V V +++ + L++
Sbjct: 76 MGDFNLHGITAPEEYGGLNLGYLYHCIALEEISRASGAVAVSYGVQSNVCINQLVR 131
>sp|Q9JHI5|IVD_MOUSE Isovaleryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Ivd
PE=1 SV=1
Length = 424
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLL----- 55
+G LG++G+ P GG+GL YL + + EEISR + G+ +++L + ++
Sbjct: 85 LGSLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCVNQIVRNGNE 144
Query: 56 --KFDFRPMLLKLVFHGTLVCHE 76
K + P L+ F G L E
Sbjct: 145 AQKEKYLPKLISGEFIGALAMSE 167
>sp|Q5RBD5|IVD_PONAB Isovaleryl-CoA dehydrogenase, mitochondrial OS=Pongo abelii GN=IVD
PE=2 SV=1
Length = 423
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLL----- 55
+G LG++G+ P GG+GL YL + + EEISR + G+ +++L + L+
Sbjct: 84 LGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNE 143
Query: 56 --KFDFRPMLLKLVFHGTLVCHE 76
K + P L+ + G L E
Sbjct: 144 AQKEKYLPKLISGEYIGALAMSE 166
>sp|P26440|IVD_HUMAN Isovaleryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=IVD
PE=1 SV=1
Length = 423
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLL----- 55
+G LG++G+ P GG+GL YL + + EEISR + G+ +++L + L+
Sbjct: 84 LGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNE 143
Query: 56 --KFDFRPMLLKLVFHGTLVCHE 76
K + P L+ + G L E
Sbjct: 144 AQKEKYLPKLISGEYIGALAMSE 166
>sp|P45954|ACDSB_HUMAN Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial
OS=Homo sapiens GN=ACADSB PE=1 SV=1
Length = 432
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 5 GLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSL 49
GLMG+EV + GGTG +L+ + EE+++ AS V + N+L
Sbjct: 101 GLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTL 145
>sp|Q5RF40|ACDSB_PONAB Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial
OS=Pongo abelii GN=ACADSB PE=2 SV=1
Length = 432
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 5 GLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSL 49
GLMG+EV + GGTG +L+ + EE+++ AS V + N+L
Sbjct: 101 GLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTL 145
>sp|P41367|ACADM_PIG Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Sus
scrofa GN=ACADM PE=1 SV=3
Length = 421
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 3 ELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVN 46
ELGLM +PE GG GL + + TEE++ GC + N
Sbjct: 83 ELGLMNTHIPESFGGLGLGIIDSCLITEELAYGCTGVQTAIEAN 126
>sp|Q0NXR6|ACAD8_BOVIN Isobutyryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACAD8
PE=2 SV=1
Length = 416
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 2 GELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNN 47
+LG GV V D+GG GL L +I E ++ GC S MS++N
Sbjct: 83 AQLGFGGVYVQTDVGGAGLSRLDTSIIFEALATGCTSTTAYMSIHN 128
>sp|P63427|ACDP_MYCTU Probable acyl-CoA dehydrogenase fadE25 OS=Mycobacterium
tuberculosis GN=fadE25 PE=3 SV=1
Length = 389
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 5 GLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLK 56
G V +PE+ GG G D +A I EE++R AS +I +VN +G +L+
Sbjct: 59 GFNAVHIPEEYGGQGADSVATCIVIEEVARVDASASLIPAVNKLGTMGLILR 110
>sp|P63428|ACDP_MYCBO Probable acyl-CoA dehydrogenase fadE25 OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=fadE25 PE=3 SV=1
Length = 389
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 5 GLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLK 56
G V +PE+ GG G D +A I EE++R AS +I +VN +G +L+
Sbjct: 59 GFNAVHIPEEYGGQGADSVATCIVIEEVARVDASASLIPAVNKLGTMGLILR 110
>sp|Q9VSA3|ACADM_DROME Probable medium-chain specific acyl-CoA dehydrogenase,
mitochondrial OS=Drosophila melanogaster GN=CG12262 PE=1
SV=1
Length = 419
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 3 ELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNS 48
ELGLM +P D+GG LD ++ EE++ GC G++ ++ S
Sbjct: 79 ELGLMNNHIPADIGGLDLDVFTTCLSAEELAYGCT--GIMTALEAS 122
>sp|P46703|ACDP_MYCLE Probable acyl-CoA dehydrogenase fadE25 OS=Mycobacterium leprae
(strain TN) GN=fadE25 PE=3 SV=1
Length = 389
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 5 GLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLK 56
G + VPE+ GG G D +A I EE++R AS +I +VN +G +L+
Sbjct: 59 GFNAIHVPEEYGGQGADSVAACIVIEEVARVDASASLIPAVNKLGTMGLILR 110
>sp|A5A6I0|ACADM_PANTR Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Pan
troglodytes GN=ACADM PE=2 SV=1
Length = 421
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 3 ELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVN-NSLYLGPLL 55
ELGLM +PE+ GG GL + +EE++ GC GV ++ NSL P++
Sbjct: 83 ELGLMNTHIPENCGGLGLGTFDACLISEELAYGCT--GVQTAIEGNSLGQMPII 134
>sp|P11310|ACADM_HUMAN Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo
sapiens GN=ACADM PE=1 SV=1
Length = 421
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 3 ELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVN-NSLYLGPLL 55
ELGLM +PE+ GG GL + +EE++ GC GV ++ NSL P++
Sbjct: 83 ELGLMNTHIPENCGGLGLGTFDACLISEELAYGCT--GVQTAIEGNSLGQMPII 134
>sp|Q5EAD4|ACDSB_BOVIN Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial
OS=Bos taurus GN=ACADSB PE=2 SV=1
Length = 432
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 5 GLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSL 49
GLMG+E+ GGTG + + + EE+++ AS ++ + N+L
Sbjct: 101 GLMGIEIDTKYGGTGASFFSSVLVIEELAKVDASVALVCDIQNTL 145
>sp|Q3SZB4|ACADM_BOVIN Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos
taurus GN=ACADM PE=2 SV=1
Length = 421
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 3 ELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNN 47
ELGLM +PE GG GL + +EE++ GC + N+
Sbjct: 83 ELGLMNTHIPESCGGLGLGTFDSCLISEELAYGCTGVQTAIEANS 127
>sp|P08503|ACADM_RAT Medium-chain specific acyl-CoA dehydrogenase, mitochondrial
OS=Rattus norvegicus GN=Acadm PE=1 SV=1
Length = 421
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 3 ELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNN 47
ELGL+ +PE GG GL + TEE++ GC + N+
Sbjct: 83 ELGLINTHIPESCGGLGLGTFDACLITEELAYGCTGVQTAIEANS 127
>sp|P45952|ACADM_MOUSE Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus
musculus GN=Acadm PE=1 SV=1
Length = 421
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 3 ELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNN 47
ELGL+ +PE GG GL + TEE++ GC + N+
Sbjct: 83 ELGLINAHIPESCGGLGLGTFDACLITEELAYGCTGVQTAIEANS 127
>sp|Q54RR5|ACDSB_DICDI Probable short/branched chain specific acyl-CoA dehydrogenase
OS=Dictyostelium discoideum GN=acadsb PE=3 SV=1
Length = 413
Score = 37.0 bits (84), Expect = 0.039, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 3 ELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSL 49
++ LMG+++ + GG ++++ IA EE+++ + VI+ V N+L
Sbjct: 77 DMNLMGIDISDSYGGANMNFMGSIIAIEELAKVDPAISVIVDVQNTL 123
>sp|Q9D7B6|ACAD8_MOUSE Isobutyryl-CoA dehydrogenase, mitochondrial OS=Mus musculus
GN=Acad8 PE=2 SV=2
Length = 413
Score = 36.6 bits (83), Expect = 0.046, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 2 GELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNN 47
+LG GV V D+GG+GL L ++ E ++ GC S +S++N
Sbjct: 80 AQLGFGGVYVRTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIHN 125
>sp|Q3SZI8|IVD_BOVIN Isovaleryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=IVD
PE=2 SV=1
Length = 426
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLL----- 55
+G LG++G+ P GG+GL +L + EEISR + G+ +++L + ++
Sbjct: 87 LGNLGVLGITAPVQYGGSGLGFLENVLVMEEISRVSGAVGLSYGAHSNLCINQIVRNGNE 146
Query: 56 --KFDFRPMLLKLVFHGTLVCHE 76
K + P L+ + G L E
Sbjct: 147 TQKEKYLPKLISGEYIGALAMSE 169
>sp|Q9UKU7|ACAD8_HUMAN Isobutyryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens
GN=ACAD8 PE=1 SV=1
Length = 415
Score = 36.2 bits (82), Expect = 0.058, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 2 GELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNN 47
+LG GV + D+GG+GL L ++ E ++ GC S +S++N
Sbjct: 82 AQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIHN 127
>sp|Q8HXY8|ACADM_MACFA Medium-chain specific acyl-CoA dehydrogenase, mitochondrial
OS=Macaca fascicularis GN=ACADM PE=2 SV=1
Length = 421
Score = 35.8 bits (81), Expect = 0.087, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 3 ELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVN-NSLYLGPLL 55
ELGLM +P++ GG GL + +EE++ GC GV ++ NSL P++
Sbjct: 83 ELGLMNPHIPQNCGGLGLGTFDACLISEELAYGCT--GVQTAIEGNSLGQMPII 134
>sp|Q60759|GCDH_MOUSE Glutaryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Gcdh
PE=2 SV=2
Length = 438
Score = 35.8 bits (81), Expect = 0.091, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
MGELG++G + + G G+ +AY + T E+ R + +MSV +SL + P+ +
Sbjct: 100 MGELGVLGPTI-KGYGCAGVSSVAYGLLTRELERVDSGYRSMMSVQSSLVMHPIYTY 155
>sp|Q22347|ACADM_CAEEL Probable medium-chain specific acyl-CoA dehydrogenase 10,
mitochondrial OS=Caenorhabditis elegans GN=acdh-10 PE=2
SV=1
Length = 417
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 4 LGLMGVEVPEDLGGTGLDYLAYAIATEEISRGC 36
LGLM ++PE GG G+ L A+ E +S GC
Sbjct: 74 LGLMNPQIPEKYGGPGMTTLETALIVEALSYGC 106
>sp|A8XNF0|ACAD1_CAEBR Probable medium-chain specific acyl-CoA dehydrogenase 1,
mitochondrial OS=Caenorhabditis briggsae GN=CBG15946
PE=3 SV=1
Length = 417
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 4 LGLMGVEVPEDLGGTGLDYLAYAIATEEISRGC 36
LGLM ++PE GG G+ L A+ E +S GC
Sbjct: 74 LGLMNPQIPEKYGGPGMTTLETALIVEALSYGC 106
>sp|P34275|IVD_CAEEL Probable acyl coa dehydrogenase 6 OS=Caenorhabditis elegans
GN=acdh-6 PE=3 SV=2
Length = 408
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 1 MGELGLMGVEVPEDLGGTGLDY-LAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF-- 57
+G+LG+ V P D GGTG D+ ++ AIA + + C S + + V + + L +F
Sbjct: 66 LGQLGVFAVNKPVDYGGTGRDFAMSIAIAEQIGAVDCGSIPMSVMVQSDMSTPALAQFGS 125
Query: 58 -DFRPMLLKLVFHGTLVC 74
R L+ +G LV
Sbjct: 126 DSLRNRFLRPSINGDLVS 143
>sp|Q9FS87|IVD2_SOLTU Isovaleryl-CoA dehydrogenase 2, mitochondrial (Fragment) OS=Solanum
tuberosum GN=IVD2 PE=1 SV=1
Length = 401
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLK 56
MG+ L+G+ VPE+ GG GL YL + IA EEISR S G+ + +L + L++
Sbjct: 65 MGDFNLLGITVPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHTNLCINQLVR 120
>sp|Q54IM8|ACAD8_DICDI Isobutyryl-CoA dehydrogenase, mitochondrial OS=Dictyostelium
discoideum GN=acad8 PE=3 SV=1
Length = 416
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 2 GELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNN 47
ELG G+ V ED+GG+GL L +I E ++ S +S++N
Sbjct: 80 AELGFGGIYVREDVGGSGLSRLDASIIIEALASADVSTTAFISIHN 125
>sp|P48818|ACADV_BOVIN Very long-chain specific acyl-CoA dehydrogenase, mitochondrial
OS=Bos taurus GN=ACADVL PE=2 SV=3
Length = 655
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
+ ELG G++VP +LGG GL YA E + G+++ + S+ +L F
Sbjct: 136 LKELGAFGLQVPNELGGVGLCNTQYARLVEIVGMYDLGVGIVLGAHQSIGFKGILLF 192
>sp|Q8HXY7|ACADV_MACFA Very long-chain specific acyl-CoA dehydrogenase, mitochondrial
OS=Macaca fascicularis GN=ACADVL PE=2 SV=1
Length = 655
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
+ ELG G++VP +LGG GL YA E + + G+ + + S+ +L F
Sbjct: 136 LKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLAVGITLGAHQSIGFKGILLF 192
>sp|Q9KJE8|BBSG_THAAR (R)-benzylsuccinyl-CoA dehydrogenase OS=Thauera aromatica GN=bbsG
PE=1 SV=1
Length = 406
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 3 ELGLMGVEVPEDLGGTGLDYLAYAIATEEISR 34
E+G G+EV E LGG GL A + EE+S+
Sbjct: 60 EMGFWGIEVDEKLGGQGLGMFAKTLVVEEMSK 91
>sp|P70584|ACDSB_RAT Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial
OS=Rattus norvegicus GN=Acadsb PE=1 SV=1
Length = 432
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 5 GLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSL 49
G+MG+EV GGT +L + EE+++ AS ++ + N++
Sbjct: 101 GMMGIEVEAKYGGTEASFLCSVLVIEELAKVDASVALLCDIQNTV 145
>sp|Q8JZN5|ACAD9_MOUSE Acyl-CoA dehydrogenase family member 9, mitochondrial OS=Mus
musculus GN=Acad9 PE=2 SV=2
Length = 625
Score = 33.5 bits (75), Expect = 0.40, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYL 51
+ LGL G++VPE+ GG GL YA E IS AS V ++ + ++ L
Sbjct: 105 LKSLGLFGIQVPEEYGGLGLSNTMYARLGEIISLD-ASITVTLAAHQAIGL 154
>sp|Q9DBL1|ACDSB_MOUSE Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial
OS=Mus musculus GN=Acadsb PE=1 SV=1
Length = 432
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 5 GLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSL 49
GLMG+EV GGT + + EE+++ AS ++ + N++
Sbjct: 101 GLMGIEVEAQYGGTEASFFCSVLVIEELAKVDASVALLCDIQNTI 145
>sp|Q96329|ACOX4_ARATH Acyl-coenzyme A oxidase 4, peroxisomal OS=Arabidopsis thaliana
GN=ACX4 PE=1 SV=1
Length = 436
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSL 49
+G +G+ G + + G GL A AIAT EI+R ASC + V++SL
Sbjct: 95 LGAMGVAGGSI-KGYGCPGLSITANAIATAEIARVDASCSTFILVHSSL 142
>sp|P49748|ACADV_HUMAN Very long-chain specific acyl-CoA dehydrogenase, mitochondrial
OS=Homo sapiens GN=ACADVL PE=1 SV=1
Length = 655
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
+ ELG G++VP +LGG GL YA E + G+ + + S+ +L F
Sbjct: 136 LKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLF 192
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.142 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,276,719
Number of Sequences: 539616
Number of extensions: 1964743
Number of successful extensions: 3921
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 3835
Number of HSP's gapped (non-prelim): 98
length of query: 136
length of database: 191,569,459
effective HSP length: 101
effective length of query: 35
effective length of database: 137,068,243
effective search space: 4797388505
effective search space used: 4797388505
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)