RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1218
(136 letters)
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid
metabolism, FAD, polymorphism, flavoprotein,
mitochondrion, disease mutation; HET: FAD COS; 1.9A
{Homo sapiens} PDB: 1jqi_A*
Length = 391
Score = 109 bits (276), Expect = 7e-30
Identities = 47/57 (82%), Positives = 52/57 (91%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
MG LGL+ ++VPE+LGG GLDYLAYAIA EEISRGCAS GVIMSVNNSLYLGP+LKF
Sbjct: 46 MGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKF 102
Score = 51.3 bits (124), Expect = 9e-09
Identities = 23/26 (88%), Positives = 25/26 (96%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGN 134
+GCAS GVIMSVNNSLYLGPILKFG+
Sbjct: 79 RGCASTGVIMSVNNSLYLGPILKFGS 104
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion,
oxidoreductase, transit peptide, fatty acid metabolism,
FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Length = 404
Score = 108 bits (272), Expect = 3e-29
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
+ + GLMG+EV + GGTG +L+ + EE+++ AS V + N+L + K
Sbjct: 69 LFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKH 125
Score = 50.2 bits (121), Expect = 2e-08
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGNAA 136
K AS V + N+L I K G
Sbjct: 102 KVDASVAVFCEIQNTLINTLIRKHGTEE 129
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project on protein STR and functional analyses; HET:
FAD; 2.50A {Thermus thermophilus}
Length = 372
Score = 107 bits (270), Expect = 4e-29
Identities = 25/57 (43%), Positives = 37/57 (64%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
+ ELGL+G+ PE+ GG GLD + +A+A EE++ S VI+SV + L LL+F
Sbjct: 43 LAELGLLGMTTPEEWGGVGLDSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRF 99
Score = 49.8 bits (120), Expect = 3e-08
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGN 134
S VI+SV + L +L+FG+
Sbjct: 76 AADPSVAVIVSVTSGLPQYMLLRFGS 101
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project protein structural and functional analyses; HET:
FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
PDB: 1ws9_A 2cx9_A*
Length = 387
Score = 107 bits (270), Expect = 5e-29
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
+ E G+ G VPE GG GL +A E I+ + + ++ +NSL G +L
Sbjct: 47 LAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLA 103
Score = 49.8 bits (120), Expect = 3e-08
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGNAA 136
+ + ++ +NSL G IL G+ A
Sbjct: 80 YYDGALALTVASHNSLATGHILLAGSEA 107
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA
dehydrogenase, flavoprotein, isovaleric acidemia; HET:
FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 394
Score = 106 bits (267), Expect = 1e-28
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
+G LG++G+ P GG+GL YL + + EEISR + G+ +++L + L++
Sbjct: 55 LGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRN 111
Score = 48.7 bits (117), Expect = 8e-08
Identities = 5/28 (17%), Positives = 15/28 (53%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGNAA 136
+ + G+ +++L + +++ GN A
Sbjct: 88 RASGAVGLSYGAHSNLCINQLVRNGNEA 115
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET:
FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Length = 397
Score = 103 bits (259), Expect = 2e-27
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 1 MGELGLMGVEVPEDLGGTGLD--YLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
MGELG G +PE+ GG G+D +LA I TEEI+RG ++ V +++ +L +
Sbjct: 46 MGELGFFGTVIPEEYGGEGMDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTY 104
Score = 49.1 bits (118), Expect = 5e-08
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGNAA 136
+G ++ V +++ IL +G+ A
Sbjct: 81 RGSSALRVQLNMEVLGCAYTILTYGSEA 108
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain
acyl-COA dehydrogenase, flavoprotein, oxidoreductase;
HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP:
a.29.3.1 e.6.1.1
Length = 383
Score = 102 bits (258), Expect = 3e-27
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 1 MGELGLMGVEVPEDLGGTGL---DYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
+ LG+ G E GG+G D L+Y +A EE+++ A + +S SL P+ +F
Sbjct: 45 LLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQF 104
Score = 50.2 bits (121), Expect = 2e-08
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGN 134
K A + +S SL PI +FG
Sbjct: 81 KYDAGVAITLSATVSLCANPIWQFGT 106
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
FDA; 2.10A {Mycobacterium thermoresistibile}
Length = 393
Score = 100 bits (252), Expect = 2e-26
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
+ G + VPE+ GG G D +A I EE++R S +I +V N L L+
Sbjct: 59 LNSSGFSAIHVPEEYGGQGADSVATCIVIEEVARVDCSASLIPAV-NKLGTMGLILR 114
Score = 43.7 bits (104), Expect = 4e-06
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGN 134
+ S +I +V N L ++ G+
Sbjct: 92 RVDCSASLIPAV-NKLGTMGLILRGS 116
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for
infectious disease, S FAD, FADH, tuberculosis,
oxidoredu; HET: FAD; 2.35A {Mycobacterium
thermoresistibile}
Length = 387
Score = 99.9 bits (250), Expect = 3e-26
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
+G GL+ + PE+ GG G Y Y EEI+ AS V +SV +SL PLL F
Sbjct: 56 LGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWASVAVAVSV-HSLSSHPLLVF 111
Score = 43.3 bits (103), Expect = 5e-06
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGNAA 136
AS V +SV +SL P+L FG
Sbjct: 89 ARWASVAVAVSV-HSLSSHPLLVFGTEE 115
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid
metabolism, transit peptide, disease mutation, LI
metabolism, coenzyme A dehydrogenase; HET: FAD TH3;
1.45A {Homo sapiens} PDB: 3b96_A*
Length = 607
Score = 99.8 bits (249), Expect = 1e-25
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
+ ELG G++VP +LGG GL YA E + G+ + + S+ +L F
Sbjct: 88 LKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLF 144
Score = 45.8 bits (109), Expect = 8e-07
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGNAA 136
G+ + + S+ IL FG A
Sbjct: 121 MHDLGVGITLGAHQSIGFKGILLFGTKA 148
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP:
a.29.3.1 e.6.1.1
Length = 379
Score = 97.9 bits (245), Expect = 2e-25
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
+ E+GL+ +PE+ GG GL L I EE++ C I + + L + P+L
Sbjct: 45 LHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAYACMGIYTI-PMASDLGITPVLLA 100
Score = 41.3 bits (98), Expect = 3e-05
Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGN 134
C I + + L + P+L G
Sbjct: 78 YACMGIYTI-PMASDLGITPVLLAGT 102
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron
transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1
e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A*
3mdd_A* 3mde_A*
Length = 396
Score = 98.0 bits (245), Expect = 2e-25
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
ELGLM +PE+ GG GL + +EE++ GC + NSL P++
Sbjct: 56 AWELGLMNTHIPENCGGLGLGTFDACLISEELAYGCTGVQTAIEG-NSLGQMPIIIA 111
Score = 42.5 bits (101), Expect = 1e-05
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGNAA 136
GC + NSL PI+ GN
Sbjct: 89 YGCTGVQTAIEG-NSLGQMPIIIAGNDQ 115
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial;
flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC;
1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 393
Score = 97.6 bits (244), Expect = 3e-25
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
+LG GV + D+GG+GL L ++ E ++ GC S +S++N + + F
Sbjct: 59 AAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIHN-MCAWMIDSF 114
Score = 42.5 bits (101), Expect = 1e-05
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGNAA 136
GC S +S++N + I FGN
Sbjct: 92 TGCTSTTAYISIHN-MCAWMIDSFGNEE 118
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas
oxidoreductase; 3.15A {Micromonospora carbonacea}
Length = 395
Score = 97.7 bits (244), Expect = 3e-25
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLA-YAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDF 59
+LGLMG VP +LGG GL L A A ++ AS + V S L ++
Sbjct: 48 FAKLGLMGATVPAELGGLGLTRLYDVATALMRLAEADASTALAWHVQLSRGLTLTYEWQH 107
Score = 40.7 bits (96), Expect = 4e-05
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGN 134
+ AS + V S L ++ +
Sbjct: 82 EADASTALAWHVQLSRGLTLTYEWQH 107
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA
dehydrogenase, long cell EDGE, FAD, inhibitor,
flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium
oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A*
2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Length = 439
Score = 97.4 bits (243), Expect = 5e-25
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
GL+ +VP LGGT + +I EE+ + + + +L L P++
Sbjct: 52 AVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVA-TALGLMPVILC 107
Score = 40.4 bits (95), Expect = 6e-05
Identities = 3/26 (11%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGN 134
+ + + +L L P++ +
Sbjct: 85 AVEPATSITIVAT-ALGLMPVILCDS 109
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA
dehydrogenase, , aldehyde dehydrogenase,
oxidoreductase; HET: FAD; 2.10A {Streptomyces
hygroscopicus} SCOP: a.29.3.1 e.6.1.1
Length = 366
Score = 96.4 bits (241), Expect = 5e-25
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
+G GL+ EV + GG GL T + C+S +M+ + + +
Sbjct: 33 LGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQG-MAAWTVQRL 88
Score = 40.2 bits (95), Expect = 5e-05
Identities = 5/28 (17%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGNAA 136
C+S +M+ + + + G+A
Sbjct: 66 SLCSSLRSVMTSQG-MAAWTVQRLGDAG 92
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase
family, kijanose, kijani FAD, flavoprotein; HET: TYD;
2.05A {Actinomadura kijaniata}
Length = 439
Score = 97.0 bits (242), Expect = 6e-25
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLA-YAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
+ + GLMG VP +LGG G+D L A+A ++R AS + + + S L ++
Sbjct: 59 LRKDGLMGATVPAELGGLGVDRLYDVAVALLAVARADASTALALHMQLSRGLTLGYEW 116
Score = 40.7 bits (96), Expect = 5e-05
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGN 134
+ AS + + + S L ++ +
Sbjct: 93 RADASTALALHMQLSRGLTLGYEWRH 118
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na
project on protein structural and functional analyses;
HET: FAD; 2.30A {Thermus thermophilus}
Length = 577
Score = 97.4 bits (243), Expect = 6e-25
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
GELGL+ ++VPE+ GG L + + EE+S V + S+ PL+ F
Sbjct: 69 AGELGLLAIDVPEEYGGLDLPKVISTVVAEELSG-SGGFSVTYGAHTSIGTLPLVYF 124
Score = 45.8 bits (109), Expect = 8e-07
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 110 GCASCGVIMSVNNSLYLGPILKFGN 134
G V + S+ P++ FG
Sbjct: 102 GSGGFSVTYGAHTSIGTLPLVYFGT 126
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA
dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A
{Podospora anserina}
Length = 438
Score = 96.2 bits (240), Expect = 1e-24
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
G++ ++ GGTG + AI EE S + + L L P+
Sbjct: 54 AVSAGILKGQISPAHGGTGGTLIESAILVEECYSVEPSAALTIFA-TGLGLTPINLA 109
Score = 38.8 bits (91), Expect = 2e-04
Identities = 5/27 (18%), Positives = 7/27 (25%), Gaps = 1/27 (3%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGNA 135
S + + L L PI
Sbjct: 87 SVEPSAALTIFA-TGLGLTPINLAAGP 112
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-structure,
beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus
anthracis}
Length = 597
Score = 97.0 bits (242), Expect = 1e-24
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
GELGL+G +VPE+ GG GLD ++ A+ E+ SR + + + P++ F
Sbjct: 74 AGELGLLGADVPEEYGGIGLDKVSSALIAEKFSRAG-GFAITHGAHVGIGSLPIVLF 129
Score = 40.8 bits (96), Expect = 4e-05
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 111 CASCGVIMSVNNSLYLGPILKFGN 134
+ + + PI+ FGN
Sbjct: 108 AGGFAITHGAHVGIGSLPIVLFGN 131
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening,
optimization, protein crystallization, structural
genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei
1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Length = 396
Score = 85.7 bits (213), Expect = 6e-21
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
MGE+GL+G +PE GG GLDY++Y + E+ R + +MSV +SL + P+ +F
Sbjct: 59 MGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEF 115
Score = 39.9 bits (94), Expect = 8e-05
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGNAA 136
+ + +MSV +SL + PI +FG+ A
Sbjct: 92 RVDSGYRSMMSVQSSLVMVPIFEFGSDA 119
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD,
STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus
thermophilus}
Length = 385
Score = 83.8 bits (208), Expect = 3e-20
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
ELG +G +P + GG G+ AY + E+ R + +SV +SL + P+ +
Sbjct: 51 FAELGFLGPTLPPEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAY 107
Score = 39.1 bits (92), Expect = 2e-04
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGNAA 136
+ + +SV +SL + PI +G+
Sbjct: 84 RVDSGLRSFVSVQSSLVMYPIYAYGSEE 111
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase,
mycobacerium smegmatis, S genomics; HET: FDA; 1.45A
{Mycobacterium smegmatis}
Length = 399
Score = 81.8 bits (203), Expect = 2e-19
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
G LG++G+ + G G + ++Y +A E+ G + +SV SL + + ++
Sbjct: 66 FGNLGVLGMHLQG-YGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRY 121
Score = 41.0 bits (97), Expect = 3e-05
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGNAA 136
G + +SV SL + I ++G+
Sbjct: 98 AGDSGFRSFVSVQGSLSMFSIYRYGSEE 125
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA
structural genomics, PSI, protein structure initiative;
HET: FAD; 1.80A {Geobacillus kaustophilus}
Length = 385
Score = 81.0 bits (201), Expect = 3e-19
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
MGE G + V E GG D+ + EE+ + S V + ++N + + +
Sbjct: 50 MGENGFLCPWVDEKYGGLNADFAYSVVINEELEK-VGSSLVGIGLHNDIVTPYIASY 105
Score = 32.5 bits (75), Expect = 0.031
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 111 CASCGVIMSVNNSLYLGPILKFGN 134
S V + ++N + I +G
Sbjct: 84 VGSSLVGIGLHNDIVTPYIASYGT 107
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FAO; 1.70A {Mycobacterium
smegmatis} PDB: 3oib_A*
Length = 403
Score = 79.9 bits (198), Expect = 8e-19
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGP-LLKF 57
ELGL+G PED GG+G D + EE+ + GV S+ P ++
Sbjct: 66 AAELGLLGAGFPEDAGGSGGDGADPVVICEEMHYAGSPGGVYASLFTCGIAVPHMIAS 123
Score = 27.5 bits (62), Expect = 1.3
Identities = 5/29 (17%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 109 KGCASCGVIMSVNNSLYLGP-ILKFGNAA 136
+ GV S+ P ++ G+
Sbjct: 99 YAGSPGGVYASLFTCGIAVPHMIASGDQR 127
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; HET: FDA; 1.70A
{Mycobacterium smegmatis}
Length = 403
Score = 79.6 bits (197), Expect = 1e-18
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
+GELGL+G+ + G G+ +AY +A E+ G + ++SV SL + + F
Sbjct: 71 LGELGLLGMHLKGY-GCAGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAIHAF 126
Score = 39.9 bits (94), Expect = 8e-05
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGNAA 136
G + ++SV SL + I FG+
Sbjct: 103 AGDSGIRSLVSVQGSLAMYAIHAFGSDE 130
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FDA; 2.50A {Mycobacterium
abscessus}
Length = 403
Score = 78.0 bits (193), Expect = 4e-18
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSV-NNSLYLGPLLKF 57
E+GL+G+ PE++GG+G + + A+ TE I S GV ++ + + L +
Sbjct: 69 AAEVGLLGIGFPEEVGGSGGNAIDSALVTEAILAAGGSTGVCAALFTHGIALPHIAAN 126
Score = 26.7 bits (60), Expect = 2.4
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 109 KGCASCGVIMSV-NNSLYLGPILKFGNAA 136
S GV ++ + + L I G+ A
Sbjct: 102 AAGGSTGVCAALFTHGIALPHIAANGSDA 130
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin,
peroxisome, glyoxysome, fatty acid metabo lipid
metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A
{Arabidopsis thaliana} PDB: 2ix6_A*
Length = 436
Score = 76.9 bits (190), Expect = 9e-18
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
+G +G+ G + G GL A AIAT EI+R ASC + V++SL + +
Sbjct: 95 LGAMGVAGGSIKG-YGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALC 150
Score = 37.6 bits (88), Expect = 5e-04
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGN 134
+ ASC + V++SL + I G+
Sbjct: 127 RVDASCSTFILVHSSLGMLTIALCGS 152
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase,
decarboxylation, flavin protein, oxidoreductase; HET:
FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB:
2r0n_A* 1sir_A* 2r0m_A*
Length = 392
Score = 73.4 bits (181), Expect = 1e-16
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
MGELG++G + G G+ +AY + E+ R + MSV +SL + P+ +
Sbjct: 54 MGELGVLGPTIKGY-GCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAY 109
Score = 36.4 bits (85), Expect = 0.001
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGNAA 136
+ + MSV +SL + PI +G+
Sbjct: 86 RVDSGYRSAMSVQSSLVMHPIYAYGSEE 113
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme
hydroxylase, oxidoreductase; 2.3A {Acinetobacter
baumannii} PDB: 2jbs_A* 2jbt_A*
Length = 422
Score = 59.4 bits (144), Expect = 2e-11
Identities = 10/48 (20%), Positives = 19/48 (39%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNS 48
+ E+GL P+ GG + +A ++ CA S+ +
Sbjct: 72 LKEIGLHRAFQPKVYGGLEMSLPDFANCIVTLAGACAGTAWAFSLLCT 119
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural
genomics protein structure initiative, midwest center
for structural genomics, MCSG; HET: 1PS; 1.65A
{Rhodococcus SP} PDB: 3aff_A 3afe_A
Length = 394
Score = 47.0 bits (112), Expect = 3e-07
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 3 ELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNS 48
E G + PE GG D + + A +I+ C S G + S+
Sbjct: 46 ETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSSIIGV 91
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics,
PSI-2, protein structure initiative, midwest CENT
structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus
SP}
Length = 414
Score = 41.7 bits (98), Expect = 2e-05
Identities = 6/43 (13%), Positives = 16/43 (37%)
Query: 3 ELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSV 45
+ G + + P GG + +A ++ + G + +
Sbjct: 59 DSGAIRLLQPRLYGGYEVHPREFAETVMGVAALDGASGWVTGI 101
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.41
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 11/68 (16%)
Query: 12 PEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGT 71
P + DYL SC +I + + Y+ F P L+ G
Sbjct: 222 PSNTPDK--DYLLSIPI---------SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
Query: 72 LVCHEVVL 79
+ ++
Sbjct: 271 TGHSQGLV 278
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle,
oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus}
SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Length = 661
Score = 27.5 bits (61), Expect = 1.6
Identities = 3/25 (12%), Positives = 9/25 (36%)
Query: 111 CASCGVIMSVNNSLYLGPILKFGNA 135
+ ++ ++L +L A
Sbjct: 93 HRGHPEPLDLHLGMFLPTLLHQATA 117
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD
cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP:
a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Length = 659
Score = 26.8 bits (59), Expect = 2.6
Identities = 2/25 (8%), Positives = 8/25 (32%)
Query: 110 GCASCGVIMSVNNSLYLGPILKFGN 134
+ ++ +++ I G
Sbjct: 91 HFIDQPAYVDLHWGMFVPAIKGQGT 115
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel,
metallo-enzyme, STRU function project, S2F, unknown
function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB:
1m68_A 1pb0_A
Length = 245
Score = 26.6 bits (59), Expect = 2.6
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 20 LDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPL 54
Y I + ++ A V + +NNS +L
Sbjct: 132 PGNPKYEIDVKAVAEAAAKHQVALEINNSSFLHSR 166
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.6 bits (58), Expect = 3.0
Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 30 EEISRG---CASCGVIMS 44
E S G CA CG+++S
Sbjct: 36 ERFSEGDVVCALCGLVLS 53
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 25.8 bits (57), Expect = 5.2
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 17 GTGLDYLAYAIATE 30
GTG YLA A+ATE
Sbjct: 61 GTGKSYLAKAVATE 74
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta
propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A
{Streptomyces coelicolor}
Length = 347
Score = 25.8 bits (57), Expect = 6.1
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 2 GELGLMGVEVPEDLGGTGLDYLAYAIATEE 31
GE GL+G+ + D + Y + A++
Sbjct: 78 GEGGLLGIALSPDYASDHMVYAYFTSASDN 107
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller,
superbarrel; HET: PQQ; 1.50A {Acinetobacter
calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A*
1qbi_A
Length = 454
Score = 25.7 bits (56), Expect = 6.4
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 2 GELGLMGVEVPEDLGGTGLDYLAYAIATEEISRG 35
G+ GL+G D Y++ + +
Sbjct: 75 GQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDK 108
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 25.4 bits (56), Expect = 6.6
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 17 GTGLDYLAYAIATE 30
GTG YLA A+ATE
Sbjct: 55 GTGKSYLAKAVATE 68
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase,
aldose sugar dehydrogenase, BET propeller fold,
oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum}
PDB: 3a9h_A*
Length = 354
Score = 25.0 bits (55), Expect = 10.0
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 2 GELGLMGVEVPEDLGGTGLDYLAYAIATEE 31
GE GL+G+ + + YL + E
Sbjct: 71 GEAGLLGLALHPEFPKKSWVYLYASYFAEG 100
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.142 0.443
Gapped
Lambda K H
0.267 0.0804 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,095,474
Number of extensions: 114163
Number of successful extensions: 308
Number of sequences better than 10.0: 1
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 75
Length of query: 136
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 52
Effective length of database: 4,356,429
Effective search space: 226534308
Effective search space used: 226534308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.7 bits)