RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1218
         (136 letters)



>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces
          hygroscopicus [TaxId: 1912]}
          Length = 210

 Score = 30.5 bits (67), Expect = 0.052
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 1  MGELGLMGVEVPEDLGGTGLDYLAYA 26
          +G  GL+  EV  + GG GL      
Sbjct: 31 LGADGLLCAEVAAEHGGLGLGSRENG 56


>d2nr7a1 d.2.1.9 (A:1-192) Putative secretion activator PG0293
           {Porphyromonas gingivalis [TaxId: 837]}
          Length = 192

 Score = 24.6 bits (53), Expect = 3.6
 Identities = 6/38 (15%), Positives = 12/38 (31%), Gaps = 2/38 (5%)

Query: 86  EVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNS 123
           +V       +  Y  R +  L      +  ++  V  S
Sbjct: 63  DVLNRV--LKPFYWDRWKADLIESQKVANILVDWVWGS 98


>d1o98a2 c.76.1.3 (A:2-76,A:311-510)
           2,3-Bisphosphoglycerate-independent phosphoglycerate
           mutase, catalytic domain {Bacillus stearothermophilus
           [TaxId: 1422]}
          Length = 275

 Score = 23.9 bits (50), Expect = 7.9
 Identities = 6/17 (35%), Positives = 11/17 (64%)

Query: 4   LGLMGVEVPEDLGGTGL 20
           L L+G+  P+++ G  L
Sbjct: 257 LDLLGLPQPKEMTGKSL 273


>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId:
           4513]}
          Length = 125

 Score = 23.3 bits (50), Expect = 9.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 105 PLGPKGCASCGVIMSVNN 122
           P GP+G A+CG  + V N
Sbjct: 54  PAGPRGQAACGKCLRVTN 71


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.142    0.443 

Gapped
Lambda     K      H
   0.267   0.0535    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 510,936
Number of extensions: 21921
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 4
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.7 bits)