BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12182
(1507 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 622 bits (1603), Expect = e-178, Method: Compositional matrix adjust.
Identities = 332/773 (42%), Positives = 472/773 (61%), Gaps = 58/773 (7%)
Query: 633 IQINVFGLKGIPSIQNLDDEFNFFLRGKEGILNVK---PSTVEGLSGEQQEAL------- 682
+Q+ + +KG S + + E++F L+G + + ++K P LS QQ+ L
Sbjct: 2606 LQLTIISVKGT-SNEIEESEWDFLLKGGDNLTSIKETIPQLDSLLSTTQQKWLICLRQQV 2664
Query: 683 -----------------QRLATKQSTPEQCVPKLW---EEEKSFSETAVA--MYQLLFIQ 720
++ K E +P+ W + + S ++ + ++L ++
Sbjct: 2665 PSFSKLVDHIQQNSSDWKQFFGKDQVGEPIIPESWIVAQAQLSNQQSTIVSNFRKILLMK 2724
Query: 721 ALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGR 780
A SDRV +H FV +VFGE F+ + +ELD+ +IVE E++ + P +LCSVPGYDAS +
Sbjct: 2725 AFHSDRVLQYSHSFVCSVFGEDFLNT--QELDMANIVEKEVKSSSPLLLCSVPGYDASSK 2782
Query: 781 VDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLH 840
VDDLA +L KQ S AIGS EGF A+ I A +SG WVLLKN+HLAPQWLVQLEKKLH
Sbjct: 2783 VDDLALQLHKQYKSFAIGSPEGFELAEKSIYAAAKSGTWVLLKNIHLAPQWLVQLEKKLH 2842
Query: 841 SLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPATRMMKAPN 900
SL PH +FRLF+T EI+P +P NLLR +F +E PPG+KANLL TF +PATRM K P
Sbjct: 2843 SLSPHPSFRLFMTSEIHPALPANLLRMSNVFSYENPPGVKANLLHTFIGIPATRMDKQPA 2902
Query: 901 ERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMGRTNLP 960
ER+R+YFLLAWFHAI+QERLRY+PLGW+KF+EFN++DLR A D++D W+D + GR+N+
Sbjct: 2903 ERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLRGALDSIDYWVDLYSKGRSNID 2962
Query: 961 PEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRH 1020
P+KIPW A+ T+L +IYGG+IDN+FD RLL SFL +LFT +F DF LV ++
Sbjct: 2963 PDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQLFTPSAFNPDFPLVPSIG----- 3017
Query: 1021 INMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLED-- 1078
+++P+GT R HF+ WIE+LP+ TP WLGLP +AE +LL+ + ++ L KMQ E+
Sbjct: 3018 LSVPEGTTRAHFMKWIEALPEISTPIWLGLPENAESLLLSNKARKMINDLQKMQSSEEDG 3077
Query: 1079 EDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYR 1138
ED+ + + + + D A +R + + W +LLPK L+ L+RT +NIKDPL+R
Sbjct: 3078 EDDQVSGSSKKESSSSSSEDKGKAKLRA---TITEWTKLLPKPLKQLKRTTQNIKDPLFR 3134
Query: 1139 YFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPR 1198
FERE+S+G L++ + +DL +++ + SG + TNY R L + + KG++P W YSVP
Sbjct: 3135 CFEREISTGGKLVKKITNDLANLLELISGNIKSTNYLRSLTTSISKGIVPKEWKWYSVPE 3194
Query: 1199 GCTVIQWVTDFXXXXXXXXXXXXXXXXGGAKELKVYPVWLGGLFNPEAYITATRQCIAEA 1258
++ W++DF + VWLGGL NPEAYITATRQ ++
Sbjct: 3195 TISLSVWISDFSKRMQQLSEISESSDYSSIQ------VWLGGLLNPEAYITATRQSASQL 3248
Query: 1259 NGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVT 1318
NGWSLE L L S + E SF V G+ L+GA N++L T + + +
Sbjct: 3249 NGWSLENLRLHASSLGKISSE----GGASFNVKGMALEGAVWNNDQLTPTDILSTPISIA 3304
Query: 1319 LVRWVKVES---ETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRG 1368
+ W + KLS+PVYLN TR+ELLF++DL ++YQR
Sbjct: 3305 TLTWKDKDDPIFNNSSSKLSVPVYLNETRSELLFSIDLPYDQSTSKQNWYQRS 3357
Score = 272 bits (696), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 148/367 (40%), Positives = 219/367 (59%), Gaps = 22/367 (5%)
Query: 2 GRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANV 61
GR+N+ P+KIPW A+ T+L +IYGG+IDN+FD RLL SFL +LFT +F DF LV ++
Sbjct: 2957 GRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQLFTPSAFNPDFPLVPSI 3016
Query: 62 DGATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQ 121
+++P+GT R HF+ WIE+LP+ TP WLGLP +AE +LL+ + ++ L KMQ
Sbjct: 3017 G-----LSVPEGTTRAHFMKWIEALPEISTPIWLGLPENAESLLLSNKARKMINDLQKMQ 3071
Query: 122 QLED--EDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENI 179
E+ ED+ + + + + D A +R + + W +LLPK L+ L+RT +NI
Sbjct: 3072 SSEEDGEDDQVSGSSKKESSSSSSEDKGKAKLRA---TITEWTKLLPKPLKQLKRTTQNI 3128
Query: 180 KDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWC 239
KDPL+R FERE+S+G L++ + +DL +++ + SG + TNY R L + + KG++P W
Sbjct: 3129 KDPLFRCFEREISTGGKLVKKITNDLANLLELISGNIKSTNYLRSLTTSISKGIVPKEWK 3188
Query: 240 RYSVPRGCTVIQWVTDFXXXXXXXXXXXXXXXXGGAKELKVYPVWLGGLFNPEAYITATR 299
YSVP ++ W++DF + VWLGGL NPEAYITATR
Sbjct: 3189 WYSVPETISLSVWISDFSKRMQQLSEISESSDYSSIQ------VWLGGLLNPEAYITATR 3242
Query: 300 QCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTIL 359
Q ++ NGWSLE L L S + E SF V G+ L+GA N++ LT T +
Sbjct: 3243 QSASQLNGWSLENLRLHASSLGKISSE----GGASFNVKGMALEGAVWNNDQ--LTPTDI 3296
Query: 360 MDLPVTL 366
+ P+++
Sbjct: 3297 LSTPISI 3303
Score = 156 bits (394), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 122/213 (57%), Gaps = 12/213 (5%)
Query: 401 LHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICS 460
L + + W +LLPK L+ L+RT +NIKDPL+R FERE+S+G L++ + +DL +++ + S
Sbjct: 3103 LRATITEWTKLLPKPLKQLKRTTQNIKDPLFRCFEREISTGGKLVKKITNDLANLLELIS 3162
Query: 461 GGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFXXXXXXXXXXXXXXXXG 520
G + TNY R L + + KG++P W YSVP ++ W++DF
Sbjct: 3163 GNIKSTNYLRSLTTSISKGIVPKEWKWYSVPETISLSVWISDFSKRMQQLSEISESSDYS 3222
Query: 521 GAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDC 580
+ VWLGGL NPEAYITATRQ ++ NGWSLE L L S + E
Sbjct: 3223 SIQ------VWLGGLLNPEAYITATRQSASQLNGWSLENLRLHASSLGKISSE----GGA 3272
Query: 581 SFRVVGLKLQGAQCRNNELVLTSTILMDLPVTL 613
SF V G+ L+GA N++ LT T ++ P+++
Sbjct: 3273 SFNVKGMALEGAVWNNDQ--LTPTDILSTPISI 3303
Score = 97.1 bits (240), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 75/136 (55%), Gaps = 7/136 (5%)
Query: 1368 GGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGA 1427
GGL NPEAYITATRQ ++ NGWSLE L L S + E SF V G+ L+GA
Sbjct: 3229 GGLLNPEAYITATRQSASQLNGWSLENLRLHASSLGKISSE----GGASFNVKGMALEGA 3284
Query: 1428 QCRNNELVLTSTILMDLPVTLVRWVKVES---ETRQDKLSLPVYLNSTRTELLFNVDLNI 1484
N++L T + + + + W + KLS+PVYLN TR+ELLF++DL
Sbjct: 3285 VWNNDQLTPTDILSTPISIATLTWKDKDDPIFNNSSSKLSVPVYLNETRSELLFSIDLPY 3344
Query: 1485 TSGQDPHSFYQRGVAL 1500
++YQR V++
Sbjct: 3345 DQSTSKQNWYQRSVSI 3360
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 621 bits (1601), Expect = e-178, Method: Compositional matrix adjust.
Identities = 332/773 (42%), Positives = 472/773 (61%), Gaps = 58/773 (7%)
Query: 633 IQINVFGLKGIPSIQNLDDEFNFFLRGKEGILNVK---PSTVEGLSGEQQEAL------- 682
+Q+ + +KG S + + E++F L+G + + ++K P LS QQ+ L
Sbjct: 2484 LQLTIISVKGT-SNEIEESEWDFLLKGGDNLTSIKETIPQLDSLLSTTQQKWLICLRQQV 2542
Query: 683 -----------------QRLATKQSTPEQCVPKLW---EEEKSFSETAVA--MYQLLFIQ 720
++ K E +P+ W + + S ++ + ++L ++
Sbjct: 2543 PSFSKLVDHIQQNSSDWKQFFGKDQVGEPIIPESWIVAQAQLSNQQSTIVSNFRKILLMK 2602
Query: 721 ALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGR 780
A SDRV +H FV +VFGE F+ + +ELD+ +IVE E++ + P +LCSVPGYDAS +
Sbjct: 2603 AFHSDRVLQYSHSFVCSVFGEDFLNT--QELDMANIVEKEVKSSSPLLLCSVPGYDASSK 2660
Query: 781 VDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLH 840
VDDLA +L KQ S AIGS EGF A+ I A +SG WVLLKN+HLAPQWLVQLEKKLH
Sbjct: 2661 VDDLALQLHKQYKSFAIGSPEGFELAEKSIYAAAKSGTWVLLKNIHLAPQWLVQLEKKLH 2720
Query: 841 SLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPATRMMKAPN 900
SL PH +FRLF+T EI+P +P NLLR +F +E PPG+KANLL TF +PATRM K P
Sbjct: 2721 SLSPHPSFRLFMTSEIHPALPANLLRMSNVFSYENPPGVKANLLHTFIGIPATRMDKQPA 2780
Query: 901 ERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMGRTNLP 960
ER+R+YFLLAWFHAI+QERLRY+PLGW+KF+EFN++DLR A D++D W+D + GR+N+
Sbjct: 2781 ERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLRGALDSIDYWVDLYSKGRSNID 2840
Query: 961 PEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRH 1020
P+KIPW A+ T+L +IYGG+IDN+FD RLL SFL +LFT +F DF LV ++
Sbjct: 2841 PDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQLFTPSAFNPDFPLVPSIG----- 2895
Query: 1021 INMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLED-- 1078
+++P+GT R HF+ WIE+LP+ TP WLGLP +AE +LL+ + ++ L KMQ E+
Sbjct: 2896 LSVPEGTTRAHFMKWIEALPEISTPIWLGLPENAESLLLSNKARKMINDLQKMQSSEEDG 2955
Query: 1079 EDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYR 1138
ED+ + + + + D A +R + + W +LLPK L+ L+RT +NIKDPL+R
Sbjct: 2956 EDDQVSGSSKKESSSSSSEDKGKAKLRA---TITEWTKLLPKPLKQLKRTTQNIKDPLFR 3012
Query: 1139 YFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPR 1198
FERE+S+G L++ + +DL +++ + SG + TNY R L + + KG++P W YSVP
Sbjct: 3013 CFEREISTGGKLVKKITNDLANLLELISGNIKSTNYLRSLTTSISKGIVPKEWKWYSVPE 3072
Query: 1199 GCTVIQWVTDFXXXXXXXXXXXXXXXXGGAKELKVYPVWLGGLFNPEAYITATRQCIAEA 1258
++ W++DF + VWLGGL NPEAYITATRQ ++
Sbjct: 3073 TISLSVWISDFSKRMQQLSEISESSDYSSIQ------VWLGGLLNPEAYITATRQSASQL 3126
Query: 1259 NGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVT 1318
NGWSLE L L S + E SF V G+ L+GA N++L T + + +
Sbjct: 3127 NGWSLENLRLHASSLGKISSE----GGASFNVKGMALEGAVWNNDQLTPTDILSTPISIA 3182
Query: 1319 LVRWVKVES---ETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRG 1368
+ W + KLS+PVYLN TR+ELLF++DL ++YQR
Sbjct: 3183 TLTWKDKDDPIFNNSSSKLSVPVYLNETRSELLFSIDLPYDQSTSKQNWYQRS 3235
Score = 272 bits (695), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 148/367 (40%), Positives = 219/367 (59%), Gaps = 22/367 (5%)
Query: 2 GRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANV 61
GR+N+ P+KIPW A+ T+L +IYGG+IDN+FD RLL SFL +LFT +F DF LV ++
Sbjct: 2835 GRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQLFTPSAFNPDFPLVPSI 2894
Query: 62 DGATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQ 121
+++P+GT R HF+ WIE+LP+ TP WLGLP +AE +LL+ + ++ L KMQ
Sbjct: 2895 G-----LSVPEGTTRAHFMKWIEALPEISTPIWLGLPENAESLLLSNKARKMINDLQKMQ 2949
Query: 122 QLED--EDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENI 179
E+ ED+ + + + + D A +R + + W +LLPK L+ L+RT +NI
Sbjct: 2950 SSEEDGEDDQVSGSSKKESSSSSSEDKGKAKLRA---TITEWTKLLPKPLKQLKRTTQNI 3006
Query: 180 KDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWC 239
KDPL+R FERE+S+G L++ + +DL +++ + SG + TNY R L + + KG++P W
Sbjct: 3007 KDPLFRCFEREISTGGKLVKKITNDLANLLELISGNIKSTNYLRSLTTSISKGIVPKEWK 3066
Query: 240 RYSVPRGCTVIQWVTDFXXXXXXXXXXXXXXXXGGAKELKVYPVWLGGLFNPEAYITATR 299
YSVP ++ W++DF + VWLGGL NPEAYITATR
Sbjct: 3067 WYSVPETISLSVWISDFSKRMQQLSEISESSDYSSIQ------VWLGGLLNPEAYITATR 3120
Query: 300 QCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTIL 359
Q ++ NGWSLE L L S + E SF V G+ L+GA N++ LT T +
Sbjct: 3121 QSASQLNGWSLENLRLHASSLGKISSE----GGASFNVKGMALEGAVWNNDQ--LTPTDI 3174
Query: 360 MDLPVTL 366
+ P+++
Sbjct: 3175 LSTPISI 3181
Score = 156 bits (394), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 122/213 (57%), Gaps = 12/213 (5%)
Query: 401 LHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICS 460
L + + W +LLPK L+ L+RT +NIKDPL+R FERE+S+G L++ + +DL +++ + S
Sbjct: 2981 LRATITEWTKLLPKPLKQLKRTTQNIKDPLFRCFEREISTGGKLVKKITNDLANLLELIS 3040
Query: 461 GGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFXXXXXXXXXXXXXXXXG 520
G + TNY R L + + KG++P W YSVP ++ W++DF
Sbjct: 3041 GNIKSTNYLRSLTTSISKGIVPKEWKWYSVPETISLSVWISDFSKRMQQLSEISESSDYS 3100
Query: 521 GAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDC 580
+ VWLGGL NPEAYITATRQ ++ NGWSLE L L S + E
Sbjct: 3101 SIQ------VWLGGLLNPEAYITATRQSASQLNGWSLENLRLHASSLGKISSE----GGA 3150
Query: 581 SFRVVGLKLQGAQCRNNELVLTSTILMDLPVTL 613
SF V G+ L+GA N++ LT T ++ P+++
Sbjct: 3151 SFNVKGMALEGAVWNNDQ--LTPTDILSTPISI 3181
Score = 97.1 bits (240), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 75/136 (55%), Gaps = 7/136 (5%)
Query: 1368 GGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGA 1427
GGL NPEAYITATRQ ++ NGWSLE L L S + E SF V G+ L+GA
Sbjct: 3107 GGLLNPEAYITATRQSASQLNGWSLENLRLHASSLGKISSE----GGASFNVKGMALEGA 3162
Query: 1428 QCRNNELVLTSTILMDLPVTLVRWVKVES---ETRQDKLSLPVYLNSTRTELLFNVDLNI 1484
N++L T + + + + W + KLS+PVYLN TR+ELLF++DL
Sbjct: 3163 VWNNDQLTPTDILSTPISIATLTWKDKDDPIFNNSSSKLSVPVYLNETRSELLFSIDLPY 3222
Query: 1485 TSGQDPHSFYQRGVAL 1500
++YQR V++
Sbjct: 3223 DQSTSKQNWYQRSVSI 3238
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 113/232 (48%), Gaps = 19/232 (8%)
Query: 776 DASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWL-VQ 834
D + ++ +LA + + I +GS E N A I+ + G W+LL+N+ ++ W+
Sbjct: 2398 DGTFKLIELAKASKESLKIIPLGSIENLNYAQEEISKSKIEGGWILLQNIQMSLSWVKTY 2457
Query: 835 LEKKLH---SLQPHANFRLFLTMEIN-PKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTV 890
L K + + + H F++F+T + K+P LL+ FV+E PGI L T +
Sbjct: 2458 LHKHVEETKAAEEHEKFKMFMTCHLTGDKLPAPLLQRTDRFVYEDIPGI----LDTVKDL 2513
Query: 891 PATRMMKAPNE---RARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDT 947
++ FLL+WFHA++ R R VP G+SK Y FN+ D + A L+
Sbjct: 2514 WGSQFFTGKISGVWSVYCTFLLSWFHALITARTRLVPHGFSKKYYFNDCDFQFASVYLEN 2573
Query: 948 WIDSTAMGRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLF 999
+ A TN IPW + ++ +YGGKID + D ++ + +F
Sbjct: 2574 VL---ATNSTN----NIPWAQVRDHIATIVYGGKIDEEKDLEVVAKLCAHVF 2618
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 97.1 bits (240), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 19/232 (8%)
Query: 776 DASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWL-VQ 834
D + ++ +LA + + I +GS E N A I+ + G W+LL+N+ ++ W+
Sbjct: 2189 DGTFKLIELAKASKESLKIIPLGSIENLNYAQEEISKSKIEGGWILLQNIQMSLSWVKTY 2248
Query: 835 LEKKLH---SLQPHANFRLFLTMEIN-PKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTV 890
L K + + + H F++F+T + K+P LL+ V+E PGI L T +
Sbjct: 2249 LHKHVEETKAAEEHEKFKMFMTCHLTGDKLPAPLLQRTDRVVYEDIPGI----LDTVKDL 2304
Query: 891 PATRMMKAPNE---RARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDT 947
++ FLL+WFHA++ R R VP G+SK Y FN+ D + A L+
Sbjct: 2305 WGSQFFTGKISGVWSVYCTFLLSWFHALITARTRLVPHGFSKKYYFNDCDFQFASVYLEN 2364
Query: 948 WIDSTAMGRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLF 999
+ A TN IPW + ++ +YGGKID + D ++ + +F
Sbjct: 2365 VL---ATNSTN----NIPWAQVRDHIATIVYGGKIDEEKDLEVVAKLCAHVF 2409
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of
Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) At 1.48 A Resolution
pdb|4AVX|A Chain A, Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) Bound To An Ip2 Compound At 1.68 A
Resolution
Length = 226
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 905 LYFLLAWFHA--------IVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMGR 956
LY + AW HA +VQ+ + + + F EF ESD A + W+D+ R
Sbjct: 110 LYLIQAWAHAFRNEPKYKVVQDTYQIMKVEGHVFPEFKESDAMFAAERAPDWVDAEECHR 169
Query: 957 TNL 959
+
Sbjct: 170 CRV 172
>pdb|2O2H|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With
1,2-Dichloroethane
pdb|2O2I|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With 1,3-Propandiol
Length = 300
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 13/82 (15%)
Query: 342 LQGAQCRNNE-LVLTSTILMD--LPVTLMQQLEDEDEFAYTEANENKTEERN-------- 390
QG + E + L I ++ LP +++QL DE+ Y N E+R
Sbjct: 152 FQGFRSPQGEPMALEHNIFVERVLPGAILRQLSDEEMNHYRRPFVNGGEDRRPTLSWPRN 211
Query: 391 --VDGRPAWMRTLHNSASTWLE 410
+DG PA + L N +WLE
Sbjct: 212 LPIDGEPAEVVALVNEYRSWLE 233
>pdb|2QVB|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
pdb|2QVB|B Chain B, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
Length = 297
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 13/82 (15%)
Query: 342 LQGAQCRNNE-LVLTSTILMD--LPVTLMQQLEDEDEFAYTEANENKTEERN-------- 390
QG + E + L I ++ LP +++QL DE+ Y N E+R
Sbjct: 150 FQGFRSPQGEPMALEHNIFVERVLPGAILRQLSDEEMNHYRRPFVNGGEDRRPTLSWPRN 209
Query: 391 --VDGRPAWMRTLHNSASTWLE 410
+DG PA + L N +WLE
Sbjct: 210 LPIDGEPAEVVALVNEYRSWLE 231
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 30.8 bits (68), Expect = 6.7, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 770 CSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNV 809
C V G DAS +DD + ++ A + SA GFN DN+
Sbjct: 45 CFVNGCDASILLDDTGSIQSEKNAGPNVNSARGFNVVDNI 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,103,717
Number of Sequences: 62578
Number of extensions: 1814897
Number of successful extensions: 4189
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4141
Number of HSP's gapped (non-prelim): 22
length of query: 1507
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1396
effective length of database: 8,027,179
effective search space: 11205941884
effective search space used: 11205941884
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)