Query psy12182
Match_columns 1507
No_of_seqs 518 out of 2480
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 20:49:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12182.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12182hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 100.0 4E-150 1E-154 1575.1 51.6 765 589-1374 2428-3241(3245)
2 4akg_A Glutathione S-transfera 100.0 4.6E-80 1.6E-84 868.0 28.7 424 589-1074 2249-2692(2695)
3 3vkg_A Dynein heavy chain, cyt 100.0 2.7E-66 9.2E-71 728.5 21.2 370 2-391 2835-3213(3245)
4 4akg_A Glutathione S-transfera 99.7 3.1E-17 1.1E-21 232.7 8.7 110 8-122 2580-2693(2695)
5 3pfi_A Holliday junction ATP-d 84.5 21 0.00072 40.9 17.6 113 764-877 55-185 (338)
6 3u61_B DNA polymerase accessor 78.2 13 0.00046 42.4 12.7 109 766-877 49-166 (324)
7 1hqc_A RUVB; extended AAA-ATPa 76.2 9 0.00031 43.6 10.5 114 764-877 38-169 (324)
8 2chg_A Replication factor C sm 70.0 46 0.0016 34.6 13.6 110 766-877 40-162 (226)
9 1sxj_B Activator 1 37 kDa subu 62.6 29 0.001 39.1 10.8 109 767-877 45-167 (323)
10 1a5t_A Delta prime, HOLB; zinc 58.6 79 0.0027 36.3 13.7 109 767-877 27-168 (334)
11 1njg_A DNA polymerase III subu 56.1 69 0.0024 33.6 11.9 110 766-877 47-186 (250)
12 2qz4_A Paraplegin; AAA+, SPG7, 54.6 53 0.0018 35.7 10.9 114 763-876 38-177 (262)
13 2chq_A Replication factor C sm 51.1 22 0.00077 39.9 7.2 110 766-877 40-162 (319)
14 3vfd_A Spastin; ATPase, microt 48.1 99 0.0034 36.2 12.4 114 763-876 147-282 (389)
15 3h4m_A Proteasome-activating n 46.9 1.1E+02 0.0039 33.6 12.1 114 763-876 50-188 (285)
16 3pvs_A Replication-associated 44.8 88 0.003 37.7 11.4 118 753-877 41-166 (447)
17 1jr3_A DNA polymerase III subu 39.9 1.3E+02 0.0044 34.5 11.5 110 766-877 40-179 (373)
18 3t15_A Ribulose bisphosphate c 38.6 1.8E+02 0.0061 32.6 12.1 102 766-867 38-175 (293)
19 1iqp_A RFCS; clamp loader, ext 38.4 87 0.003 35.1 9.5 110 766-877 48-170 (327)
20 2gno_A DNA polymerase III, gam 36.2 1.3E+02 0.0046 34.1 10.6 118 765-886 18-151 (305)
21 1xwi_A SKD1 protein; VPS4B, AA 35.4 4.3E+02 0.015 29.9 14.8 114 763-876 44-179 (322)
22 1lv7_A FTSH; alpha/beta domain 33.1 3.5E+02 0.012 29.1 13.1 184 764-979 45-255 (257)
23 2qp9_X Vacuolar protein sortin 32.2 2.3E+02 0.0079 32.7 12.0 114 763-876 83-217 (355)
24 3cf0_A Transitional endoplasmi 30.0 3.2E+02 0.011 30.5 12.5 112 763-876 48-186 (301)
25 3bcv_A Putative glycosyltransf 29.7 2.3E+02 0.0079 29.8 10.7 71 767-841 37-111 (240)
26 3m6a_A ATP-dependent protease 28.9 79 0.0027 39.1 7.5 114 764-877 108-254 (543)
27 1jbk_A CLPB protein; beta barr 27.0 71 0.0024 32.2 5.7 110 764-877 43-186 (195)
28 2x5n_A SPRPN10, 26S proteasome 25.4 79 0.0027 33.5 5.7 48 767-815 110-160 (192)
29 3eie_A Vacuolar protein sortin 25.3 3.2E+02 0.011 30.8 11.4 111 763-873 50-180 (322)
30 2ce7_A Cell division protein F 24.1 3.5E+02 0.012 32.8 11.8 183 765-979 50-259 (476)
31 4fcw_A Chaperone protein CLPB; 23.6 2E+02 0.007 31.9 9.2 94 763-856 46-169 (311)
32 1sxj_C Activator 1 40 kDa subu 21.5 4.7E+02 0.016 29.5 11.9 109 767-877 49-170 (340)
33 3b9p_A CG5977-PA, isoform A; A 21.4 5.7E+02 0.02 27.9 12.4 108 763-870 53-182 (297)
34 3d8b_A Fidgetin-like protein 1 20.8 4E+02 0.014 30.5 11.2 109 763-871 116-245 (357)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=3.9e-150 Score=1575.06 Aligned_cols=765 Identities=44% Similarity=0.773 Sum_probs=610.7
Q ss_pred ecccccccchhhcccccc---CChhhHhhcCcchhhHHHHHHHhhhhhhh----hhheec--CC--CCCCCcHHHHHHhh
Q psy12182 589 LQGAQCRNNELVLTSTIL---MDLPVTLNYNPPQISAFVLDINTQGIIQI----NVFGLK--GI--PSIQNLDDEFNFFL 657 (1507)
Q Consensus 589 ~~~~~~~~~~~i~~~~~~---~~l~~Rl~~L~~~~t~~vy~~v~rgLfe~----~sf~l~--~i--~~~~~~~~E~~ffL 657 (1507)
|+.-.-.|+.+|++++++ +++++|+++|++++|+++|.||||||||+ |+|++| .| ..+.++++||+|||
T Consensus 2428 L~~F~~lF~~si~~s~~~~~~~~~~~Rl~~l~~~lt~~vy~~v~RgLFekdKLlFs~~l~~~~i~~~~~~i~~~E~~flL 2507 (3245)
T 3vkg_A 2428 LRAFLDIFYNLLNNNPNLVDKKDPNERLVYLSKDIFSMTFNRVTRTLLNDDKLTFALQLTIISVKGTSNEIEESEWDFLL 2507 (3245)
T ss_dssp HHHHHHHHHHHHSSCGGGSSCCCHHHHHHHHHHHHHHHHHHHHTTTSCGGGTTHHHHHHHHHHTTTSTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccccccHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCHHHHHHHh
Confidence 444455688999999988 89999999999999999999999999999 999998 23 46789999999999
Q ss_pred cCCccccCCC---CCCCCCCCHHHHHHHHHhh-cc----------------------CCCCcccCC-cccccc-----cc
Q psy12182 658 RGKEGILNVK---PSTVEGLSGEQQEALQRLA-TK----------------------QSTPEQCVP-KLWEEE-----KS 705 (1507)
Q Consensus 658 ~G~~~~~~~~---~~~~~wls~~~W~~i~~L~-~~----------------------~~~pe~~~P-~~w~~~-----~~ 705 (1507)
+|+....... +++++|+++++|.+++.|+ .+ +..||..+| +.|++. +.
T Consensus 2508 ~g~~~~~~~~~~~~~~~~wl~~~~w~~i~~L~~~l~~F~~l~~~~~~~~~~W~~~~~s~~pe~~~pp~~w~~~~~~~~~~ 2587 (3245)
T 3vkg_A 2508 KGGDNLTSIKETIPQLDSLLSTTQQKWLICLRQQVPSFSKLVDHIQQNSSDWKQFFGKDQVGEPIIPESWIVAQAQLSNQ 2587 (3245)
T ss_dssp HTTTTGGGCCCCCGGGTTTCCHHHHHHHHHHHHHCGGGTTHHHHHHHTHHHHHHHTCSSCSSCCCCCTTHHHHHHHHSSC
T ss_pred cCCccccccccccCCccccCCHHHHHHHHHHHhhChhhhhHHHHHHhCHHHHHHHhcccCcccccCcccccccccccccc
Confidence 9987654322 3457999999999999998 32 678888776 889642 12
Q ss_pred cccchHHHHHHHHHHHhcCCcHHHHHHHHHHhhhcccccccCCCCCChhhhhhhccCCCccEEEEeCCCCCchHHHHHHH
Q psy12182 706 FSETAVAMYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLA 785 (1507)
Q Consensus 706 ~~~~l~~fqklllir~lRpDrl~~a~~~fV~~~LG~~f~~~~~~~~dl~~~~~~~s~~~tPiifils~G~DP~~~i~~lA 785 (1507)
+.+.+++||||||+||+||||+..|+++||.+.||.+|+++ +++||+.+|+++|++++|+|||+|||+||+..|++||
T Consensus 2588 ~~~~l~~fqkLlllr~lRpDr~~~a~~~fV~~~lG~~fv~~--~~~dl~~~~~~es~~~tPlifilSpG~DP~~~l~~lA 2665 (3245)
T 3vkg_A 2588 QSTIVSNFRKILLMKAFHSDRVLQYSHSFVCSVFGEDFLNT--QELDMANIVEKEVKSSSPLLLCSVPGYDASSKVDDLA 2665 (3245)
T ss_dssp CCHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHSCTTTTCC----CCHHHHHHHSSCTTSCEECEECTTCCCHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCccCCC--CCCCHHHHHhccCCCCccEEEEeCCCCChHHHHHHHH
Confidence 34558999999999999999999999999999999999987 7899999996479999999999999999999999999
Q ss_pred HHhcCceeEEeecCCcCHHHHHHHHHHHhhcCcEEEeccccchhhhHHHHHHHHhccCCCCceeEEEEcccCCCCcHHHH
Q psy12182 786 AELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLL 865 (1507)
Q Consensus 786 ~~~~~~~~~ISLG~gq~~~~Ae~~I~~a~~~G~WVlLqN~HLa~swl~~Le~~l~~~~~h~~FRLwLTsep~~~fP~~lL 865 (1507)
+++|.+++.||||||||...|+++|++|+++|+||+||||||+++||+.||++++++++|++|||||||+|+++||++||
T Consensus 2666 ~~~~~~~~~iSLGqgQg~~~A~~~i~~a~~~G~WV~LqNcHL~~sWl~~LEk~le~~~~h~~FRLwLTsep~~~fP~~iL 2745 (3245)
T 3vkg_A 2666 LQLHKQYKSFAIGSPEGFELAEKSIYAAAKSGTWVLLKNIHLAPQWLVQLEKKLHSLSPHPSFRLFMTSEIHPALPANLL 2745 (3245)
T ss_dssp HHHTCCCCCCBTTSHHHHHHHHHHHHHHHHHTCEEECBCGGGCTTTHHHHHHHHHTCCCCTTCEEECCEESCTTSCHHHH
T ss_pred HHhCCCcEEEECCCCccHHHHHHHHHHHHHcCCEEEEechhhhHhHHHHHHHHHHccCCCCCeeEEEEecCCCCCCHHHH
Confidence 99999999999999999668999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceEEEecCchhHHHHHHHHhccCCcchhcCCchHHHhhhHHHHHHHHHHHHHhhccCCCcccccccCHhHHHHHHHHH
Q psy12182 866 RAGRIFVFEPPPGIKANLLRTFSTVPATRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTL 945 (1507)
Q Consensus 866 q~s~Kit~E~P~glk~nl~r~~~~~~~~~~~~~~~~~~rllf~L~~fHavl~ERrkfgplGWn~~YeFn~sDl~~s~~~l 945 (1507)
|+|+|||+|||+|+|+||+|+|..++++.++.++.++++++|+||||||||+|||||||+|||++||||++||++|+++|
T Consensus 2746 q~siKit~EpP~GlkaNl~rs~~~~~~~~~~~~~~~~~~llf~L~fFHAvvqERrkfgplGWn~~YeFn~sDl~~s~~~l 2825 (3245)
T 3vkg_A 2746 RMSNVFSYENPPGVKANLLHTFIGIPATRMDKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLRGALDSI 2825 (3245)
T ss_dssp HTSEECCBCCCSSHHHHHHHHHTTSCHHHHTSSSTHHHHHHHHHHHHHHHHHHGGGGTTTSCSSCCCCCHHHHHHHHHHH
T ss_pred HhhhHheeCCChhHHHHHHHHHHhCCHHHhccCcHHHHHHHHHHHHHHHHHHHHHHhCccccCcccccchHHHHHHHHHH
Confidence 99999999999999999999999999888888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCChHHHHHHHhhcccccccCChhHHHHHHHHHHHhccccccccccccccccCCCcccccCCC
Q psy12182 946 DTWIDSTAMGRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPD 1025 (1507)
Q Consensus 946 ~~~l~~~~~~~~~~~~~~ipw~~Lr~li~ei~YGGrVtd~~Drr~L~tll~~~f~~~~~~~~~~l~~~~~~~~~~~~iP~ 1025 (1507)
++|+++++.|+.|++++.|||++||||+|||+|||||||+||||+|++|+++||++++++++|.++++ ..|.+|+
T Consensus 2826 ~~~l~~~~~~~~n~~~~~iPw~~L~yl~gei~YGGrVtDd~DrrlL~t~l~~~~~~~~~~~~~~~~~~-----~~~~~P~ 2900 (3245)
T 3vkg_A 2826 DYWVDLYSKGRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQLFTPSAFNPDFPLVPS-----IGLSVPE 2900 (3245)
T ss_dssp HHHHHHHSTTCSCCCTTTSCHHHHHHCCCCCCCSTTCCSSSHHHHHHHHHHHHSSGGGGSSSCEEEGG-----GTEECCC
T ss_pred HHHHHHhcccccccCCCCCCHHHHHHHHhhcccCCccCCHHHHHHHHHHHHHHcCHhhcCCcccCCCC-----CCCCCCC
Confidence 99999987788888889999999999999999999999999999999999999999999999999864 3467999
Q ss_pred CCChHHHHHHHHcCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHhhccccchhhhh-hhhcccccccc-ccCCCccch
Q psy12182 1026 GTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFA-YTEANENKTEE-RNVDGRPAW 1103 (1507)
Q Consensus 1026 ~~~~~~y~~~I~~LP~~d~Pe~fGL~~NAe~~~~~~~s~~ll~~ll~~q~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~ 1103 (1507)
+.++++|++||++||..|+|++||||+||++++++++++.++++|+.+||++++++.. ++++++..... +++.++
T Consensus 2901 ~~~~~~y~~~I~~LP~~~~P~~fGLh~NA~i~~~~~~s~~l~~~ll~lq~~~~~~~~~~~s~~~~~~~~~~~~~~~~--- 2977 (3245)
T 3vkg_A 2901 GTTRAHFMKWIEALPEISTPIWLGLPENAESLLLSNKARKMINDLQKMQSSEEDGEDDQVSGSSKKESSSSSSEDKG--- 2977 (3245)
T ss_dssp CSSHHHHHHHHTTSCSCCCGGGGTSCTTHHHHHHHHHHHHHHHHHHHHHHTTTC---------------CHHHHHHH---
T ss_pred CCCHHHHHHHHHhCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHHhCCcccccccccccccccccccccccCCCc---
Confidence 9999999999999999999999999999999999999999999999999975433110 11100000000 011112
Q ss_pred HHHHHHHHHHHHHHChhhHHHhhhhhccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCcccChhHHHHHHhHh
Q psy12182 1104 MRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLV 1183 (1507)
Q Consensus 1104 ~~~l~~~~~~~l~~LP~~l~~~~~~~~~~~~Pl~~fl~qE~~~~n~LL~~I~~sL~~L~~al~G~~~ms~~le~~~~~L~ 1183 (1507)
.+.+.+++++|+++||+.++..+.......+|+++||.||++|||+|++.||+||.+|++||+|.++||+++++++++|+
T Consensus 2978 ~~~v~~~~~~~l~~lP~~~~~~~~~~~~~~~pl~~vl~QE~~r~n~Ll~~ir~sL~~L~~aikG~i~mS~~le~l~~sl~ 3057 (3245)
T 3vkg_A 2978 KAKLRATITEWTKLLPKPLKQLKRTTQNIKDPLFRCFEREISTGGKLVKKITNDLANLLELISGNIKSTNYLRSLTTSIS 3057 (3245)
T ss_dssp HHC----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------
T ss_pred HHHHHHHHHHHHHhCccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCCcCCHHHHHHHHHHH
Confidence 23488999999999999887655544556799999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceEecCCccChhHHHHHHHHHHHHHhCccc
Q psy12182 1184 KGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSL 1263 (1507)
Q Consensus 1184 ~~~VP~~W~~~s~ps~k~L~sWi~dL~~R~~~l~~w~~~~~~~g~~~~~p~~~wLsgff~PqaFLTA~~Q~~ARk~~~pi 1263 (1507)
+|+||+.|.+++|||.+||++|++||.+|++|++.|.. .+ ...|.+|||||||||||||||+||++||+++|||
T Consensus 3058 ~~~VP~~W~~~syps~k~L~~W~~dL~~R~~~l~~W~~---~~---~~~p~~~WLsgff~Pq~FLTA~~Q~~ARk~~~pl 3131 (3245)
T 3vkg_A 3058 KGIVPKEWKWYSVPETISLSVWISDFSKRMQQLSEISE---SS---DYSSIQVWLGGLLNPEAYITATRQSASQLNGWSL 3131 (3245)
T ss_dssp --------CCSCCCSSCCHHHHHHHHHHHHHHHHHHHH---C----------CCGGGSSCHHHHHHHHHHHHHHHTC---
T ss_pred cCCCchhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHh---cC---CCCCceEecCCCcchHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999853 32 1257899999999999999999999999999999
Q ss_pred cceEE-EEEEeccCCCCccCCCCCeEEEEeEEEeCceecCCcceeccccccCCCeeEEEEEeecccC---CCCcEEEeEe
Q psy12182 1264 EELVL-DVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESET---RQDKLSLPVY 1339 (1507)
Q Consensus 1264 D~L~~-~~~v~~~~~~~~~~~~~~~~~I~GL~LeGA~wd~~~l~l~e~~~~~lP~i~~~~v~~~~~~---~~~~y~cPvY 1339 (1507)
|+|.| +++|++.. .. |++ |+||+|||||||+||.+.++++++.+++||++|++|++..... ..+.|.||||
T Consensus 3132 D~l~l~~~~V~~~~---~~-p~~-G~yI~GL~LeGA~WD~~~~~l~e~~~~~lPvi~l~~~~~~~~~~~~~~~~y~cPvY 3206 (3245)
T 3vkg_A 3132 ENLRLHASSLGKIS---SE-GGA-SFNVKGMALEGAVWNNDQLTPTDILSTPISIATLTWKDKDDPIFNNSSSKLSVPVY 3206 (3245)
T ss_dssp ---CCCBC--------------C-CEEECSCEEESCEECSSSEECCSSSEEECCCEEECCCC---CCTTSGGGEEEEEEE
T ss_pred ccceeeeEEEecCC---CC-CCc-eEEEeCEEEeccEecCCCceecCcccCCCCceeEEEeecccccccCCCCeEEcceE
Confidence 99999 99997532 11 445 5689999999999999999999999999999999998765422 2467999999
Q ss_pred eccccCCeEEEEEeccCCCCCCcceEeccccccch
Q psy12182 1340 LNSTRTELLFNVDLNITSGQDPHSFYQRGGLFNPE 1374 (1507)
Q Consensus 1340 ~t~~R~~~l~t~~l~~~s~~~~~~Wi~RGVa~~~~ 1374 (1507)
+|+.|+++++++.|+++++.+++||++||||++|+
T Consensus 3207 kt~~R~~~l~~~~l~~~t~~~~~~Wi~rGVALl~~ 3241 (3245)
T 3vkg_A 3207 LNETRSELLFSIDLPYDQSTSKQNWYQRSVSISSW 3241 (3245)
T ss_dssp SSTTCCCEEEEEEEEBCTTSCHHHHHTTTCEEESC
T ss_pred ecCCCCCEEEEEEEECCCCCCHhHHHHHHHHHHcC
Confidence 99999999999999999999999999999999985
No 2
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=100.00 E-value=4.6e-80 Score=867.98 Aligned_cols=424 Identities=20% Similarity=0.287 Sum_probs=352.3
Q ss_pred ecccccccchhh-ccccccCChhhHhhcCcchhhHHHHHHHhhhhhhh----hhheec-CCC--CCCCcHHH-HHHhhcC
Q psy12182 589 LQGAQCRNNELV-LTSTILMDLPVTLNYNPPQISAFVLDINTQGIIQI----NVFGLK-GIP--SIQNLDDE-FNFFLRG 659 (1507)
Q Consensus 589 ~~~~~~~~~~~i-~~~~~~~~l~~Rl~~L~~~~t~~vy~~v~rgLfe~----~sf~l~-~i~--~~~~~~~E-~~ffL~G 659 (1507)
|+.-.-.|+.+| +++++++++++|+++|++++|+.+|.||||||||+ |+|++| .|. .+.+...| |.||++|
T Consensus 2249 L~~F~~lF~~~i~~~s~~~~~~~~R~~~l~~~~t~~vy~~v~r~Lfe~dkl~fs~~l~~~i~~~~~~~~~~e~~~~~l~~ 2328 (2695)
T 4akg_A 2249 IGQFLSCFKRVFIKKSRETRAARTRVDEILWLLYQEVYCQFSTALDKKFKMIMAMTMFCLYKFDIESEQYKEAVLTMIGV 2328 (2695)
T ss_dssp HHHHHHHHHHTTC----------CHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCchHHHHHHHHhc
Confidence 444455689999 99999999999999999999999999999999999 999998 443 23444445 8888876
Q ss_pred CccccCCCCCCCCCCCHHHHHHHHHhhccCCCCcccCCcccccccccccchHHHHHHHHHHHhcCCcHHHHHHHHHHhhh
Q psy12182 660 KEGILNVKPSTVEGLSGEQQEALQRLATKQSTPEQCVPKLWEEEKSFSETAVAMYQLLFIQALRSDRVPAAAHIFVSAVF 739 (1507)
Q Consensus 660 ~~~~~~~~~~~~~wls~~~W~~i~~L~~~~~~pe~~~P~~w~~~~~~~~~l~~fqklllir~lRpDrl~~a~~~fV~~~L 739 (1507)
.. . .++.|+|+.... | ..|+++ ++++|+|++..++ +|+...+
T Consensus 2329 ~~-~---~~~~~~~~~~~~---------------------~----------~~~~~l--~~~~~~~~~~~~~-~~~~~~~ 2370 (2695)
T 4akg_A 2329 LS-E---SSDGVPKLTVDT---------------------N----------NDLRYL--WDYVTTKSYISAL-NWFKNEF 2370 (2695)
T ss_dssp HS-S---SCCCCCCCCTTT---------------------C----------SHHHHH--HHHHHTTCHHHHH-HHHHHTT
T ss_pred cc-c---CCCCcccccccc---------------------h----------HHHHHH--HHHhcccHHHHHH-HHHHhcc
Confidence 41 1 122234432211 1 246665 8899999886654 5665433
Q ss_pred cccccccCCCCCChhhhhhhccCCCccEEEEeCCCCCchHHHHHHHHHhcCceeEEeecCCcCHHHHHHHHHHHhhcCcE
Q psy12182 740 GEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKW 819 (1507)
Q Consensus 740 G~~f~~~~~~~~dl~~~~~~~s~~~tPiifils~G~DP~~~i~~lA~~~~~~~~~ISLG~gq~~~~Ae~~I~~a~~~G~W 819 (1507)
+ + +++||+.++ ++++.+|+||++|||+||+..|++||++++.+++.||||||||...|+++|++|+++|+|
T Consensus 2371 ~-----~--~~~~l~~~~--~s~~~~PlifilspG~DP~~~l~~la~~~~~~~~~iSlGqgq~~~~A~~~i~~a~~~G~W 2441 (2695)
T 4akg_A 2371 F-----V--DEWNIADVV--ANSDNNYFTMASERDVDGTFKLIELAKASKESLKIIPLGSIENLNYAQEEISKSKIEGGW 2441 (2695)
T ss_dssp C-----C--CCCCHHHHH--HHCCCSEEEEEECTTCCTHHHHHHHHHTTTCCCCEEECCSHHHHHHHHHHHHHHHHHTCC
T ss_pred C-----C--CcccHHHHH--hcCCCCeEEeeCCCCCCchHHHHHHHHHhCCCcEEEecCCCccHHHHHHHHHHHHHcCCe
Confidence 2 2 569999865 477899999999999999999999999999999999999999966899999999999999
Q ss_pred EEeccccchhhhHHHH-HHHHhc---cCCCCceeEEEEcc-cCCCCcHHHHhcceEEEecCchhHHHHHHHHhccCCcch
Q psy12182 820 VLLKNVHLAPQWLVQL-EKKLHS---LQPHANFRLFLTME-INPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPATR 894 (1507)
Q Consensus 820 VlLqN~HLa~swl~~L-e~~l~~---~~~h~~FRLwLTse-p~~~fP~~lLq~s~Kit~E~P~glk~nl~r~~~~~~~~~ 894 (1507)
|+||||||+++||+.| |+++++ .++|++|||||||| |++.||++|||+|+|||+|||+|+|+||+|+|.. +.
T Consensus 2442 v~LqN~HL~~swl~~Llek~~e~~~~~~~h~~FRLwlts~~~~~~fP~~iLq~s~K~t~EpP~Glkanl~r~~~~---~~ 2518 (2695)
T 4akg_A 2442 ILLQNIQMSLSWVKTYLHKHVEETKAAEEHEKFKMFMTCHLTGDKLPAPLLQRTDRFVYEDIPGILDTVKDLWGS---QF 2518 (2695)
T ss_dssp EEEETGGGGHHHHHHTHHHHHHHCSSTTTSCSCCEEEECCSSSCCCCHHHHHHSEEEEECCCCCHHHHHHHHHHH---GG
T ss_pred EEeecccccHHHHHHHHHHHHhcccccCCCCCceEEEeccCCcCcCCHHHHhccceeeecCChhHHHHHHHHhhh---HH
Confidence 9999999999999999 999984 47899999999999 9999999999999999999999999999999942 33
Q ss_pred h--cCCchHHHhhhHHHHHHHHHHHHHhhccCCCcccccccCHhHHHHHHHHHHHHHHhhcCCCCCCCCCCCChHHHHHH
Q psy12182 895 M--MKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMGRTNLPPEKIPWNALITL 972 (1507)
Q Consensus 895 ~--~~~~~~~~rllf~L~~fHavl~ERrkfgplGWn~~YeFn~sDl~~s~~~l~~~l~~~~~~~~~~~~~~ipw~~Lr~l 972 (1507)
+ +.++.+|++++|+||||||||+|||||||+|||++||||++||++|+++|++|++++ .++.|||++||||
T Consensus 2519 ~~~~~~~~~~~~llf~L~~fHavv~ERrkfgplGWn~~YeFn~sDl~~s~~~l~~~l~~~-------~~~~ipw~~l~yl 2591 (2695)
T 4akg_A 2519 FTGKISGVWSVYCTFLLSWFHALITARTRLVPHGFSKKYYFNDCDFQFASVYLENVLATN-------STNNIPWAQVRDH 2591 (2695)
T ss_dssp GGCCSSCHHHHHHHHHHHHHHHHHHHHHHSTTTTSSSCCCCCHHHHHHHHHHHHHHHHHS-------CSCSGGGHHHHHH
T ss_pred HhhccccHHHHHHHHHHHHHHHHHHHHHHhCccccCcCCCCCHhHHHHHHHHHHHHHHhc-------CCCCCCHHHHHHH
Confidence 3 356789999999999999999999999999999999999999999999999999874 2468999999999
Q ss_pred HhhcccccccCChhHHHHHHHHHHHhccccccccccccccccCC-Cccc-ccCCCCCChHHHHHHHHcC--CCCCCCccc
Q psy12182 973 LSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDG-ATRH-INMPDGTRRDHFLHWIESL--PDRQTPSWL 1048 (1507)
Q Consensus 973 i~ei~YGGrVtd~~Drr~L~tll~~~f~~~~~~~~~~l~~~~~~-~~~~-~~iP~~~~~~~y~~~I~~L--P~~d~Pe~f 1048 (1507)
+|||+|||||||+||||+|++|+++||++ +++|.+.++..- .+.. |++|+ ++++|++||++| |..++|+||
T Consensus 2592 ~ge~~YGGrvtd~~Drr~l~t~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~--~~~~y~~~i~~l~~P~~~~p~~f 2666 (2695)
T 4akg_A 2592 IATIVYGGKIDEEKDLEVVAKLCAHVFCG---SDNLQIVPGVRIPQPLLQQSEEE--ERARLTAILSNTIEPADSLSSWL 2666 (2695)
T ss_dssp HHHTTSTTTCCSHHHHHHHHHHHHHHTCC---SSBCCSSSSCCCBCCCTTCCHHH--HHHHHHHHHHHCCCCTTHHHHTS
T ss_pred HHHhhcCCccCCHHHHHHHHHHHHHHcCC---CCCcccCCCcCcCCCCccCCCCC--CHHHHHHHHHhcCCCCCCChhhc
Confidence 99999999999999999999999999998 667877764211 0111 44454 789999999999 999999999
Q ss_pred cCCccHHHHHHHHHHHHHHHHHHhhc
Q psy12182 1049 GLPNSAEKVLLTTRGTDLVAKLLKMQ 1074 (1507)
Q Consensus 1049 GL~~NAe~~~~~~~s~~ll~~ll~~q 1074 (1507)
|||+||++++++++++.++++|+++|
T Consensus 2667 Glh~NA~i~~~~~~~~~~~~~il~i~ 2692 (2695)
T 4akg_A 2667 QLPRESILNYERLQAKEVASSTEQLL 2692 (2695)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999986
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=2.7e-66 Score=728.49 Aligned_cols=370 Identities=40% Similarity=0.749 Sum_probs=252.1
Q ss_pred CCCCCCCCCCCHHHHHHHHhhccccccccChhHHHHHHHHHHhhcCcccCCCCcccccccCCCcceeeCCCCCChHHHHH
Q psy12182 2 GRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLH 81 (1507)
Q Consensus 2 ~~~~~~~~~IPW~aLryLigei~YGGrVtD~~DrrlL~sll~~~f~p~~l~~~~~l~~~~~~~~~~~~~P~~~~l~~y~~ 81 (1507)
||.|+++++|||++||||+|||+|||||||+||||+|.+|++.||+|++++++|.|+++. .|++|+..++++|++
T Consensus 2835 ~~~n~~~~~iPw~~L~yl~gei~YGGrVtDd~DrrlL~t~l~~~~~~~~~~~~~~~~~~~-----~~~~P~~~~~~~y~~ 2909 (3245)
T 3vkg_A 2835 GRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQLFTPSAFNPDFPLVPSI-----GLSVPEGTTRAHFMK 2909 (3245)
T ss_dssp TCSCCCTTTSCHHHHHHCCCCCCCSTTCCSSSHHHHHHHHHHHHSSGGGGSSSCEEEGGG-----TEECCCCSSHHHHHH
T ss_pred cccccCCCCCCHHHHHHHHhhcccCCccCCHHHHHHHHHHHHHHcCHhhcCCcccCCCCC-----CCCCCCCCCHHHHHH
Confidence 688999999999999999999999999999999999999999999999999999998741 477999999999999
Q ss_pred HHHcCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHhcccccchhhh-hhhhccccccccccCCchhhhHHHHHHHHH
Q psy12182 82 WIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFA-YTEANENKTEERNVDGRPAWMRTLHNSAST 160 (1507)
Q Consensus 82 ~I~~LP~~d~P~~fGLh~NAe~~~~~~~s~~ll~~Ll~~q~~~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~ 160 (1507)
||++||..++|++||||+||++++++++++.++++|+.+||+.++++.. .+...+...... ++.....+.+.+++++
T Consensus 2910 ~I~~LP~~~~P~~fGLh~NA~i~~~~~~s~~l~~~ll~lq~~~~~~~~~~~s~~~~~~~~~~--~~~~~~~~~v~~~~~~ 2987 (3245)
T 3vkg_A 2910 WIEALPEISTPIWLGLPENAESLLLSNKARKMINDLQKMQSSEEDGEDDQVSGSSKKESSSS--SSEDKGKAKLRATITE 2987 (3245)
T ss_dssp HHTTSCSCCCGGGGTSCTTHHHHHHHHHHHHHHHHHHHHHHTTTC---------------CH--HHHHHHHHC-------
T ss_pred HHHhCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHHhCCccccccccccccccccccccc--ccCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999975433100 000000000000 0011122347889999
Q ss_pred HHHHchHHHHHHHHhhhccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHcCCCcccccc
Q psy12182 161 WLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCR 240 (1507)
Q Consensus 161 ~l~~LP~~~~~~~~~~~~~~~Pl~~fL~qEi~~~n~LL~~Ir~sL~~L~~~lkG~~~mS~~le~l~~aL~~g~VP~~W~~ 240 (1507)
|++++|+.|+..++......+|+++||.||++|||+|++.||+||.+|+++++|.++||+++++++++|+.|+||+.|.+
T Consensus 2988 ~l~~lP~~~~~~~~~~~~~~~pl~~vl~QE~~r~n~Ll~~ir~sL~~L~~aikG~i~mS~~le~l~~sl~~~~VP~~W~~ 3067 (3245)
T 3vkg_A 2988 WTKLLPKPLKQLKRTTQNIKDPLFRCFEREISTGGKLVKKITNDLANLLELISGNIKSTNYLRSLTTSISKGIVPKEWKW 3067 (3245)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------------CC
T ss_pred HHHhCccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCCcCCHHHHHHHHHHHcCCCchhhhc
Confidence 99999999986655555678999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhh--CCCCCCccceEecCCccChHHHHHHHHHHHHHHhCccccceEE-EE
Q psy12182 241 YSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQ--GGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVL-DV 317 (1507)
Q Consensus 241 ~s~ps~kpL~sWl~dL~~R~~~L~~w~~~i~~--g~p~~~~~~~fwLsgFf~PqaFLTA~rQ~~ARk~~iplD~L~l-~~ 317 (1507)
++|||.+||++|++||.+|++|++.|. .. |.| .+||||||||||+||||+||++||+++||||.|.| ++
T Consensus 3068 ~syps~k~L~~W~~dL~~R~~~l~~W~---~~~~~~p-----~~~WLsgff~Pq~FLTA~~Q~~ARk~~~plD~l~l~~~ 3139 (3245)
T 3vkg_A 3068 YSVPETISLSVWISDFSKRMQQLSEIS---ESSDYSS-----IQVWLGGLLNPEAYITATRQSASQLNGWSLENLRLHAS 3139 (3245)
T ss_dssp SCCCSSCCHHHHHHHHHHHHHHHHHHH---HC------------CCGGGSSCHHHHHHHHHHHHHHHTC------CCCBC
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHH---hcCCCCC-----ceEecCCCcchHHHHHHHHHHHHHHhCCCCccceeeeE
Confidence 999999999999999999999999995 33 344 78999999999999999999999999999999999 99
Q ss_pred EEeccCCCCccCCCCCeeEEEeeEEecccccCCCceeccCCCCCCCeEEEEeeecCC-----CCCeeeccccCcCCCCC
Q psy12182 318 SITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLMQQLEDED-----EFAYTEANENKTEERNV 391 (1507)
Q Consensus 318 ~V~~~~~~~~~~~p~~GvyI~GL~LeGA~WD~~~~~L~es~~~~LPvi~l~p~~~~~-----~~~~Y~CPvY~t~~rg~ 391 (1507)
+|++... . |++|+||+|||||||+||...+++.++.+.+||+||++|+.... ..+.|.||||+|..|+.
T Consensus 3140 ~V~~~~~----~-p~~G~yI~GL~LeGA~WD~~~~~l~e~~~~~lPvi~l~~~~~~~~~~~~~~~~y~cPvYkt~~R~~ 3213 (3245)
T 3vkg_A 3140 SLGKISS----E-GGASFNVKGMALEGAVWNNDQLTPTDILSTPISIATLTWKDKDDPIFNNSSSKLSVPVYLNETRSE 3213 (3245)
T ss_dssp ---------------CCEEECSCEEESCEECSSSEECCSSSEEECCCEEECCCC---CCTTSGGGEEEEEEESSTTCCC
T ss_pred EEecCCC----C-CCceEEEeCEEEeccEecCCCceecCcccCCCCceeEEEeecccccccCCCCeEEcceEecCCCCC
Confidence 9975321 2 78899999999999999999999999999999999999984321 35689999999988864
No 4
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.67 E-value=3.1e-17 Score=232.71 Aligned_cols=110 Identities=19% Similarity=0.389 Sum_probs=95.2
Q ss_pred CCCCCHHHHHHHHhhccccccccChhHHHHHHHHHHhhcCcccCCCCcccccccCCC-cce-eeCCCCCChHHHHHHHHc
Q psy12182 8 PEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGA-TRH-INMPDGTRRDHFLHWIES 85 (1507)
Q Consensus 8 ~~~IPW~aLryLigei~YGGrVtD~~DrrlL~sll~~~f~p~~l~~~~~l~~~~~~~-~~~-~~~P~~~~l~~y~~~I~~ 85 (1507)
+++|||++||||+|||+|||||||+||||+|.+|++.||+| +++|.|+++-.-. ... |++|+ ++++|++||++
T Consensus 2580 ~~~ipw~~l~yl~ge~~YGGrvtd~~Drr~l~t~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~--~~~~y~~~i~~ 2654 (2695)
T 4akg_A 2580 TNNIPWAQVRDHIATIVYGGKIDEEKDLEVVAKLCAHVFCG---SDNLQIVPGVRIPQPLLQQSEEE--ERARLTAILSN 2654 (2695)
T ss_dssp SCSGGGHHHHHHHHHTTSTTTCCSHHHHHHHHHHHHHHTCC---SSBCCSSSSCCCBCCCTTCCHHH--HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHHcCC---CCCcccCCCcCcCCCCccCCCCC--CHHHHHHHHHh
Confidence 47899999999999999999999999999999999999999 6678887631100 001 44444 78999999999
Q ss_pred C--CCCCCCccccCChhHHHHHHHHHHHHHHHHHHHhcc
Q psy12182 86 L--PDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQ 122 (1507)
Q Consensus 86 L--P~~d~P~~fGLh~NAe~~~~~~~s~~ll~~Ll~~q~ 122 (1507)
| |..++|++||||+||++++++++++.++++|+.+|.
T Consensus 2655 l~~P~~~~p~~fGlh~NA~i~~~~~~~~~~~~~il~i~~ 2693 (2695)
T 4akg_A 2655 TIEPADSLSSWLQLPRESILNYERLQAKEVASSTEQLLQ 2693 (2695)
T ss_dssp CCCCTTHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCChhhcCCChhHHHHHHHHHHHHHHHHHHHHHh
Confidence 9 999999999999999999999999999999998874
No 5
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=84.45 E-value=21 Score=40.91 Aligned_cols=113 Identities=12% Similarity=0.105 Sum_probs=84.1
Q ss_pred CccEEEEeCCCCCchHHHHHHHHHhcCceeEEeecCCcCHHHHHHHHHHHhhcCcEEEeccccc-hhhhHHHHHHHHhcc
Q psy12182 764 NVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHL-APQWLVQLEKKLHSL 842 (1507)
Q Consensus 764 ~tPiifils~G~DP~~~i~~lA~~~~~~~~~ISLG~gq~~~~Ae~~I~~a~~~G~WVlLqN~HL-a~swl~~Le~~l~~~ 842 (1507)
..++++.-.||+==+..+..+|+..+..+..++.+...+......++.. ...|..|+|..+|. .......|-+.++..
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~ 133 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILTN-LSEGDILFIDEIHRLSPAIEEVLYPAMEDY 133 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHHHHHHHT-CCTTCEEEEETGGGCCHHHHHHHHHHHHTS
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHHHHHHHh-ccCCCEEEEechhhcCHHHHHHHHHHHHhc
Confidence 3478899999998898899999988888877776554443334444443 56788999999994 456666776666542
Q ss_pred C----------------CCCceeEEEEcccCCCCcHHHHhcc-eEEEecCch
Q psy12182 843 Q----------------PHANFRLFLTMEINPKVPVNLLRAG-RIFVFEPPP 877 (1507)
Q Consensus 843 ~----------------~h~~FRLwLTsep~~~fP~~lLq~s-~Kit~E~P~ 877 (1507)
. ..++|+++.++.....++..|+.++ ..+.+.+|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~ 185 (338)
T 3pfi_A 134 RLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYK 185 (338)
T ss_dssp CC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCC
T ss_pred cchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcC
Confidence 2 1236999999999889999999987 788888773
No 6
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=78.18 E-value=13 Score=42.40 Aligned_cols=109 Identities=12% Similarity=0.141 Sum_probs=79.7
Q ss_pred cEEEEeC-CCCCchHHHHHHHHHhcCceeEEeecCCcCHHHHHHHHHHHhh------cCcEEEeccccchh--hhHHHHH
Q psy12182 766 PAVLCSV-PGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVR------SGKWVLLKNVHLAP--QWLVQLE 836 (1507)
Q Consensus 766 Piifils-~G~DP~~~i~~lA~~~~~~~~~ISLG~gq~~~~Ae~~I~~a~~------~G~WVlLqN~HLa~--swl~~Le 836 (1507)
+++++.. ||+==|..+..+|++.+..+..++-. ..+....+..+..... ++.-|+|.++|... .-...|.
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~-~~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~ 127 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDVNADMMFVNGS-DCKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLR 127 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETT-TCCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccc-ccCHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHH
Confidence 3455555 89888999999999988777777743 3344455566665443 45789999999764 4445555
Q ss_pred HHHhccCCCCceeEEEEcccCCCCcHHHHhcceEEEecCch
Q psy12182 837 KKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP 877 (1507)
Q Consensus 837 ~~l~~~~~h~~FRLwLTsep~~~fP~~lLq~s~Kit~E~P~ 877 (1507)
+.++. ..++.++.+|+.....++..+..+|..+.+.+|+
T Consensus 128 ~~le~--~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~ 166 (324)
T 3u61_B 128 SFMEA--YSSNCSIIITANNIDGIIKPLQSRCRVITFGQPT 166 (324)
T ss_dssp HHHHH--HGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCC
T ss_pred HHHHh--CCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCC
Confidence 55554 2467899999999889999999999999888875
No 7
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=76.21 E-value=9 Score=43.64 Aligned_cols=114 Identities=14% Similarity=0.120 Sum_probs=82.7
Q ss_pred CccEEEEeCCCCCchHHHHHHHHHhcCceeEEeecCCcCHHHHHHHHHHHhhcCcEEEeccccchhh-hHHHHHHHHhcc
Q psy12182 764 NVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQ-WLVQLEKKLHSL 842 (1507)
Q Consensus 764 ~tPiifils~G~DP~~~i~~lA~~~~~~~~~ISLG~gq~~~~Ae~~I~~a~~~G~WVlLqN~HLa~s-wl~~Le~~l~~~ 842 (1507)
..++++.-.+|+==+.....+|+..+..+..++.............+..+..+|..|+|..+|..+. ....|-+.++..
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~ 117 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDF 117 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHS
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhh
Confidence 3578999999999999999999988877777776554443334455555567889999999997653 444555555432
Q ss_pred C----------------CCCceeEEEEcccCCCCcHHHHhcc-eEEEecCch
Q psy12182 843 Q----------------PHANFRLFLTMEINPKVPVNLLRAG-RIFVFEPPP 877 (1507)
Q Consensus 843 ~----------------~h~~FRLwLTsep~~~fP~~lLq~s-~Kit~E~P~ 877 (1507)
. ..++|+++.++.....|...++.+. ..+.+.+|+
T Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~ 169 (324)
T 1hqc_A 118 VMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYT 169 (324)
T ss_dssp EEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCC
T ss_pred hhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCC
Confidence 1 1257999999988888888888887 577777664
No 8
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=69.99 E-value=46 Score=34.64 Aligned_cols=110 Identities=15% Similarity=0.227 Sum_probs=75.1
Q ss_pred cEEEEeCCCCCchHHHHHHHHHhc-----CceeEEeecCCcCHHHHHHHHHHHh-------hcCcEEEeccccchh-hhH
Q psy12182 766 PAVLCSVPGYDASGRVDDLAAELG-----KQIASIAIGSAEGFNQADNVINVAV-------RSGKWVLLKNVHLAP-QWL 832 (1507)
Q Consensus 766 Piifils~G~DP~~~i~~lA~~~~-----~~~~~ISLG~gq~~~~Ae~~I~~a~-------~~G~WVlLqN~HLa~-swl 832 (1507)
++++.-.+|+-=|..+..+|++.. ..+..+..+...+.......+.... .++..|+|.++|... .-.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~ 119 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQ 119 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHH
Confidence 588888889888888888887642 2355555554445434444454432 356789999998664 344
Q ss_pred HHHHHHHhccCCCCceeEEEEcccCCCCcHHHHhcceEEEecCch
Q psy12182 833 VQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP 877 (1507)
Q Consensus 833 ~~Le~~l~~~~~h~~FRLwLTsep~~~fP~~lLq~s~Kit~E~P~ 877 (1507)
..|.+.++. .+.+.++.+++.....+...+..++..+.+.||+
T Consensus 120 ~~l~~~l~~--~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~ 162 (226)
T 2chg_A 120 AALRRTMEM--YSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVP 162 (226)
T ss_dssp HHHHHHHHH--TTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC
T ss_pred HHHHHHHHh--cCCCCeEEEEeCChhhcCHHHHHhCceeecCCCC
Confidence 455555554 3568899999988778888888888877777654
No 9
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=62.56 E-value=29 Score=39.06 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=74.0
Q ss_pred EEEEeCCCCCchHHHHHHHHHhc-----CceeEEeecCCcCHHHHHHHHHHHh-------h-cCcEEEeccccchh-hhH
Q psy12182 767 AVLCSVPGYDASGRVDDLAAELG-----KQIASIAIGSAEGFNQADNVINVAV-------R-SGKWVLLKNVHLAP-QWL 832 (1507)
Q Consensus 767 iifils~G~DP~~~i~~lA~~~~-----~~~~~ISLG~gq~~~~Ae~~I~~a~-------~-~G~WVlLqN~HLa~-swl 832 (1507)
++|.-.+|+-=+..+..+|+... ..+..+.-+...+.......++... . +..-|+|.++|... .-.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~ 124 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQ 124 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHH
Confidence 77777888888888888888752 2234444333334444555565543 2 24688999999653 334
Q ss_pred HHHHHHHhccCCCCceeEEEEcccCCCCcHHHHhcceEEEecCch
Q psy12182 833 VQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP 877 (1507)
Q Consensus 833 ~~Le~~l~~~~~h~~FRLwLTsep~~~fP~~lLq~s~Kit~E~P~ 877 (1507)
..|.+.++. +.++.++.+++.....++..+..+|..+.+.+|+
T Consensus 125 ~~L~~~le~--~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~ 167 (323)
T 1sxj_B 125 QALRRTMEL--YSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLS 167 (323)
T ss_dssp HTTHHHHHH--TTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC
T ss_pred HHHHHHHhc--cCCCceEEEEeCChhhchhHHHhhceEEeecCCC
Confidence 455555554 4567899999988788899999999988888765
No 10
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=58.62 E-value=79 Score=36.28 Aligned_cols=109 Identities=20% Similarity=0.265 Sum_probs=74.2
Q ss_pred EEEEeCCCCCchHHHHHHHHHhc------------------------CceeEEeec---CCcCHHHHHHHHHHHhh----
Q psy12182 767 AVLCSVPGYDASGRVDDLAAELG------------------------KQIASIAIG---SAEGFNQADNVINVAVR---- 815 (1507)
Q Consensus 767 iifils~G~DP~~~i~~lA~~~~------------------------~~~~~ISLG---~gq~~~~Ae~~I~~a~~---- 815 (1507)
++|.-.+|+-=+.....+|+... ..+..+.-. ..-+.+..+.+++.+..
T Consensus 27 ~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~~~~~ 106 (334)
T 1a5t_A 27 LLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARL 106 (334)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTSCCTT
T ss_pred EEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhhcccc
Confidence 66666777777777777777652 124444432 33455556777776543
Q ss_pred -cCcEEEeccccchh-hhHHHHHHHHhccCCCCceeEEEEcccCCCCcHHHHhcceEEEecCch
Q psy12182 816 -SGKWVLLKNVHLAP-QWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP 877 (1507)
Q Consensus 816 -~G~WVlLqN~HLa~-swl~~Le~~l~~~~~h~~FRLwLTsep~~~fP~~lLq~s~Kit~E~P~ 877 (1507)
...-|++.++|... .-...|-+.++. +.++..++|++....+++..|.++|..+.+.+|+
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~ 168 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEE--PPAETWFFLATREPERLLATLRSRCRLHYLAPPP 168 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCC
Confidence 23457889999654 455667777764 5567888888876678999999999999988764
No 11
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=56.12 E-value=69 Score=33.64 Aligned_cols=110 Identities=18% Similarity=0.234 Sum_probs=70.0
Q ss_pred cEEEEeCCCCCchHHHHHHHHHhcC------------------------ceeEEeecCCcCHHHHHHHHHHHh-----hc
Q psy12182 766 PAVLCSVPGYDASGRVDDLAAELGK------------------------QIASIAIGSAEGFNQADNVINVAV-----RS 816 (1507)
Q Consensus 766 Piifils~G~DP~~~i~~lA~~~~~------------------------~~~~ISLG~gq~~~~Ae~~I~~a~-----~~ 816 (1507)
++++.-.+|+==|..+..+|+..+. .+..+.-...........+++... .+
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 126 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCC
Confidence 5677777787777778888776532 112222222122223445555432 23
Q ss_pred CcEEEeccccch-hhhHHHHHHHHhccCCCCceeEEEEcccCCCCcHHHHhcceEEEecCch
Q psy12182 817 GKWVLLKNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP 877 (1507)
Q Consensus 817 G~WVlLqN~HLa-~swl~~Le~~l~~~~~h~~FRLwLTsep~~~fP~~lLq~s~Kit~E~P~ 877 (1507)
...|+|.++|.. ...+..|-+.++. ...+.++.+++.....++..++.++..+.+.|++
T Consensus 127 ~~vlviDe~~~l~~~~~~~l~~~l~~--~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~ 186 (250)
T 1njg_A 127 FKVYLIDEVHMLSRHSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 186 (250)
T ss_dssp SEEEEEETGGGSCHHHHHHHHHHHHS--CCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC
T ss_pred ceEEEEECcccccHHHHHHHHHHHhc--CCCceEEEEEeCChHhCCHHHHHHhhhccCCCCC
Confidence 468999999854 4555666666653 3568899999887778888888888888877653
No 12
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=54.62 E-value=53 Score=35.71 Aligned_cols=114 Identities=16% Similarity=0.119 Sum_probs=72.9
Q ss_pred CCccEEEEeCCCCCchHHHHHHHHHhcCceeEEeecCC------cCHHHHHHHHHHHhhc-CcEEEeccccchh------
Q psy12182 763 GNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSA------EGFNQADNVINVAVRS-GKWVLLKNVHLAP------ 829 (1507)
Q Consensus 763 ~~tPiifils~G~DP~~~i~~lA~~~~~~~~~ISLG~g------q~~~~Ae~~I~~a~~~-G~WVlLqN~HLa~------ 829 (1507)
...++++.-.||+-=|..+..+|++.+..+..++...- ++.......++.+... +.-|+|.++|...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~ 117 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTT 117 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC----------
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhcccccc
Confidence 44678999999999999999999998888777765431 1112334555556543 5788899998641
Q ss_pred ----------hhHHHHHHHHhccCCCCceeEEEEcccCCCCcHHHHh--cc-eEEEecCc
Q psy12182 830 ----------QWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLR--AG-RIFVFEPP 876 (1507)
Q Consensus 830 ----------swl~~Le~~l~~~~~h~~FRLwLTsep~~~fP~~lLq--~s-~Kit~E~P 876 (1507)
..+..|-..+.......+++++.|++....++..+++ +. ..+.+.+|
T Consensus 118 ~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p 177 (262)
T 2qz4_A 118 MSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLP 177 (262)
T ss_dssp ---------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSC
T ss_pred ccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCc
Confidence 1233333334444456688999998877777777876 33 45555444
No 13
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=51.10 E-value=22 Score=39.95 Aligned_cols=110 Identities=15% Similarity=0.237 Sum_probs=72.0
Q ss_pred cEEEEeCCCCCchHHHHHHHHHh-----cCceeEEeecCCcCHHHHHHHHHHHh-------hcCcEEEeccccchhh-hH
Q psy12182 766 PAVLCSVPGYDASGRVDDLAAEL-----GKQIASIAIGSAEGFNQADNVINVAV-------RSGKWVLLKNVHLAPQ-WL 832 (1507)
Q Consensus 766 Piifils~G~DP~~~i~~lA~~~-----~~~~~~ISLG~gq~~~~Ae~~I~~a~-------~~G~WVlLqN~HLa~s-wl 832 (1507)
+++|.-.+|+==+..+..+|+.. +..+..+......+.+.....+.... .++..|+|.++|.... -.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~ 119 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQ 119 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHH
Confidence 47888888888788888888875 22344555443323222333343332 3457899999996543 22
Q ss_pred HHHHHHHhccCCCCceeEEEEcccCCCCcHHHHhcceEEEecCch
Q psy12182 833 VQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP 877 (1507)
Q Consensus 833 ~~Le~~l~~~~~h~~FRLwLTsep~~~fP~~lLq~s~Kit~E~P~ 877 (1507)
..|.+.++ .+.++.++.+++.....++..+..+|..+.+.||+
T Consensus 120 ~~L~~~le--~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~ 162 (319)
T 2chq_A 120 AALRRTME--MYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVP 162 (319)
T ss_dssp HTTGGGTS--SSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCC
T ss_pred HHHHHHHH--hcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCC
Confidence 33333332 34578999999988888999999999988888765
No 14
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=48.07 E-value=99 Score=36.22 Aligned_cols=114 Identities=15% Similarity=0.112 Sum_probs=74.2
Q ss_pred CCccEEEEeCCCCCchHHHHHHHHHhcCceeEEeecCC------cCHHHHHHHHHHHhhc-CcEEEeccccch-------
Q psy12182 763 GNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSA------EGFNQADNVINVAVRS-GKWVLLKNVHLA------- 828 (1507)
Q Consensus 763 ~~tPiifils~G~DP~~~i~~lA~~~~~~~~~ISLG~g------q~~~~Ae~~I~~a~~~-G~WVlLqN~HLa------- 828 (1507)
+..+++|.-.||+==+..+..+|...+..+..++.+.- +.......+++.+... +.-|+|..+|..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~ 226 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG 226 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC------
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc
Confidence 45689999999999999999999998888777775442 2222234445555543 368999999854
Q ss_pred -----hhhHHHHHHHHhccC--CCCceeEEEEcccCCCCcHHHHhcce-EEEecCc
Q psy12182 829 -----PQWLVQLEKKLHSLQ--PHANFRLFLTMEINPKVPVNLLRAGR-IFVFEPP 876 (1507)
Q Consensus 829 -----~swl~~Le~~l~~~~--~h~~FRLwLTsep~~~fP~~lLq~s~-Kit~E~P 876 (1507)
......|...++... ...+++++.++.....++..++++.. .+.+.+|
T Consensus 227 ~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p 282 (389)
T 3vfd_A 227 EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLP 282 (389)
T ss_dssp --CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCC
T ss_pred cchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCc
Confidence 122233444444333 35678888888887788888888874 4544443
No 15
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=46.86 E-value=1.1e+02 Score=33.62 Aligned_cols=114 Identities=12% Similarity=0.161 Sum_probs=76.0
Q ss_pred CCccEEEEeCCCCCchHHHHHHHHHhcCceeEEeecCC----cC--HHHHHHHHHHHhhc-CcEEEeccccchh------
Q psy12182 763 GNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSA----EG--FNQADNVINVAVRS-GKWVLLKNVHLAP------ 829 (1507)
Q Consensus 763 ~~tPiifils~G~DP~~~i~~lA~~~~~~~~~ISLG~g----q~--~~~Ae~~I~~a~~~-G~WVlLqN~HLa~------ 829 (1507)
+..++++.-.||+-=|..+..+|+..+..+..++...- .+ .......++.+... ..-|+|.++|...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~ 129 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDA 129 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSS
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccc
Confidence 45679999999999999999999998887777764331 12 11233444445443 3689999998642
Q ss_pred ------hhHHHHHHHH---hccCCCCceeEEEEcccCCCCcHHHHh--cc-eEEEecCc
Q psy12182 830 ------QWLVQLEKKL---HSLQPHANFRLFLTMEINPKVPVNLLR--AG-RIFVFEPP 876 (1507)
Q Consensus 830 ------swl~~Le~~l---~~~~~h~~FRLwLTsep~~~fP~~lLq--~s-~Kit~E~P 876 (1507)
.....|...+ +......+++++.|+.....++..+++ +. ..+.+.+|
T Consensus 130 ~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p 188 (285)
T 3h4m_A 130 LTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAP 188 (285)
T ss_dssp CCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCC
T ss_pred cCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCC
Confidence 2333343433 334566789999999988889988886 33 45555554
No 16
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=44.84 E-value=88 Score=37.73 Aligned_cols=118 Identities=14% Similarity=0.190 Sum_probs=78.7
Q ss_pred hhhhhhhccCCCccEEEEeCCCCCchHHHHHHHHHhcCceeEEeecCCcCHHHHHHHHHHHh-----hcCcEEEeccccc
Q psy12182 753 LPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAV-----RSGKWVLLKNVHL 827 (1507)
Q Consensus 753 l~~~~~~~s~~~tPiifils~G~DP~~~i~~lA~~~~~~~~~ISLG~gq~~~~Ae~~I~~a~-----~~G~WVlLqN~HL 827 (1507)
|...++ .....+++|.-.||+==|.....+|+..+..+..++.. +.+....+..++.+. .++.-|+|.++|-
T Consensus 41 L~~~i~--~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~-~~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~ 117 (447)
T 3pvs_A 41 LPRAIE--AGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAV-TSGVKEIREAIERARQNRNAGRRTILFVDEVHR 117 (447)
T ss_dssp HHHHHH--HTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETT-TCCHHHHHHHHHHHHHHHHTTCCEEEEEETTTC
T ss_pred HHHHHH--cCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEec-cCCHHHHHHHHHHHHHhhhcCCCcEEEEeChhh
Confidence 445554 22235789999999988999999999888877777643 244444556666554 3578999999996
Q ss_pred hhh-hHHHHHHHHhccCCCCceeEEEEcc--cCCCCcHHHHhcceEEEecCch
Q psy12182 828 APQ-WLVQLEKKLHSLQPHANFRLFLTME--INPKVPVNLLRAGRIFVFEPPP 877 (1507)
Q Consensus 828 a~s-wl~~Le~~l~~~~~h~~FRLwLTse--p~~~fP~~lLq~s~Kit~E~P~ 877 (1507)
... -...|-+.++. ..++++.++. +...++..|+.+|..+.+.+|+
T Consensus 118 l~~~~q~~LL~~le~----~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~ 166 (447)
T 3pvs_A 118 FNKSQQDAFLPHIED----GTITFIGATTENPSFELNSALLSRARVYLLKSLS 166 (447)
T ss_dssp C------CCHHHHHT----TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCC
T ss_pred hCHHHHHHHHHHHhc----CceEEEecCCCCcccccCHHHhCceeEEeeCCcC
Confidence 542 22233333332 4577777663 3447899999999999988875
No 17
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=39.87 E-value=1.3e+02 Score=34.53 Aligned_cols=110 Identities=18% Similarity=0.232 Sum_probs=71.5
Q ss_pred cEEEEeCCCCCchHHHHHHHHHhcC------------------------ceeEEeecCCcCHHHHHHHHHHHhh-----c
Q psy12182 766 PAVLCSVPGYDASGRVDDLAAELGK------------------------QIASIAIGSAEGFNQADNVINVAVR-----S 816 (1507)
Q Consensus 766 Piifils~G~DP~~~i~~lA~~~~~------------------------~~~~ISLG~gq~~~~Ae~~I~~a~~-----~ 816 (1507)
+++|.-.+|+==|..+..+|+..+. .+..+.-+...+.+..+.+++.+.. .
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 119 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCC
Confidence 4667777777777777777776532 1233332221222234555655432 2
Q ss_pred CcEEEeccccch-hhhHHHHHHHHhccCCCCceeEEEEcccCCCCcHHHHhcceEEEecCch
Q psy12182 817 GKWVLLKNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP 877 (1507)
Q Consensus 817 G~WVlLqN~HLa-~swl~~Le~~l~~~~~h~~FRLwLTsep~~~fP~~lLq~s~Kit~E~P~ 877 (1507)
..-|++.++|.. ..-...|.+.++. +.++.++.+++.....++..+..+|..+.+.+|+
T Consensus 120 ~~vliiDe~~~l~~~~~~~Ll~~le~--~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~ 179 (373)
T 1jr3_A 120 FKVYLIDEVHMLSRHSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 (373)
T ss_dssp SEEEEEECGGGSCHHHHHHHHHHHHS--CCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCC
T ss_pred eEEEEEECcchhcHHHHHHHHHHHhc--CCCceEEEEEeCChHhCcHHHHhheeEeeCCCCC
Confidence 457899999854 4455667666664 4567889988877778888999999888888765
No 18
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=38.65 E-value=1.8e+02 Score=32.64 Aligned_cols=102 Identities=12% Similarity=0.050 Sum_probs=66.0
Q ss_pred cEEEEeCCCCCchHHHHHHHHHhcCceeEEeecCCc----C--HHHHHHHHHHH-----hhcCcEEEeccccchhh----
Q psy12182 766 PAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAE----G--FNQADNVINVA-----VRSGKWVLLKNVHLAPQ---- 830 (1507)
Q Consensus 766 Piifils~G~DP~~~i~~lA~~~~~~~~~ISLG~gq----~--~~~Ae~~I~~a-----~~~G~WVlLqN~HLa~s---- 830 (1507)
-+++.-.||+==|.....+|++.+.++..++.++-. | ......+++.| ...+.-|+|..++-...
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~ 117 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGG 117 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCC
Confidence 356667899999999999999999999888865421 1 11233445555 33567899999853321
Q ss_pred ----------hHHHHHHHHhccC-----------CCCceeEEEEcccCCCCcHHHHhc
Q psy12182 831 ----------WLVQLEKKLHSLQ-----------PHANFRLFLTMEINPKVPVNLLRA 867 (1507)
Q Consensus 831 ----------wl~~Le~~l~~~~-----------~h~~FRLwLTsep~~~fP~~lLq~ 867 (1507)
....|-+.++... ...+..++.|+.....+|..+++.
T Consensus 118 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~ 175 (293)
T 3t15_A 118 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRD 175 (293)
T ss_dssp ------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHH
T ss_pred CccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCC
Confidence 3355555554221 345678899998888899999863
No 19
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=38.45 E-value=87 Score=35.11 Aligned_cols=110 Identities=18% Similarity=0.222 Sum_probs=71.2
Q ss_pred cEEEEeCCCCCchHHHHHHHHHhc-----CceeEEeecCCcCHHHHHHHHHHHh-------hcCcEEEeccccch-hhhH
Q psy12182 766 PAVLCSVPGYDASGRVDDLAAELG-----KQIASIAIGSAEGFNQADNVINVAV-------RSGKWVLLKNVHLA-PQWL 832 (1507)
Q Consensus 766 Piifils~G~DP~~~i~~lA~~~~-----~~~~~ISLG~gq~~~~Ae~~I~~a~-------~~G~WVlLqN~HLa-~swl 832 (1507)
+++|.-.+|+==+..+..+|+... ..+..+.-+...+.+.....+.... .++.-|++.++|.. ..-.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~ 127 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQ 127 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHH
Confidence 577888888888888888888752 1233443222222222223333322 34668899999865 3445
Q ss_pred HHHHHHHhccCCCCceeEEEEcccCCCCcHHHHhcceEEEecCch
Q psy12182 833 VQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP 877 (1507)
Q Consensus 833 ~~Le~~l~~~~~h~~FRLwLTsep~~~fP~~lLq~s~Kit~E~P~ 877 (1507)
..|.+.++. ..++.++.+++.....++..+..+|..+.+.|++
T Consensus 128 ~~L~~~le~--~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~ 170 (327)
T 1iqp_A 128 QALRRTMEM--FSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLR 170 (327)
T ss_dssp HHHHHHHHH--TTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCC
T ss_pred HHHHHHHHh--cCCCCeEEEEeCCccccCHHHHhhCcEEEecCCC
Confidence 566666654 3567899999887778888999999888777654
No 20
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=36.16 E-value=1.3e+02 Score=34.10 Aligned_cols=118 Identities=10% Similarity=0.023 Sum_probs=74.4
Q ss_pred cc-EEEEeCCCCCchHHHHHHHHHh------cCceeEEeecC-CcCHHHHHHHHHHHhhc---C--cEEEeccccchhh-
Q psy12182 765 VP-AVLCSVPGYDASGRVDDLAAEL------GKQIASIAIGS-AEGFNQADNVINVAVRS---G--KWVLLKNVHLAPQ- 830 (1507)
Q Consensus 765 tP-iifils~G~DP~~~i~~lA~~~------~~~~~~ISLG~-gq~~~~Ae~~I~~a~~~---G--~WVlLqN~HLa~s- 830 (1507)
.| .+|.-+||+-=+.....+|+.. ...+..+.... .-+.+..+.+++.+... | .-|++.++|....
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~ 97 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ 97 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHH
Confidence 45 4555566665566777787753 23565665322 34555677888877543 2 4678899997653
Q ss_pred hHHHHHHHHhccCCCCceeEEEEcccCCCCcHHHHhcceEEEecCch--hHHHHHHHH
Q psy12182 831 WLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP--GIKANLLRT 886 (1507)
Q Consensus 831 wl~~Le~~l~~~~~h~~FRLwLTsep~~~fP~~lLq~s~Kit~E~P~--glk~nl~r~ 886 (1507)
=...|-+.++. +.++.+++|+++...+++..|..+ .+.+.+|+ -+++-+.+.
T Consensus 98 a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l~~~~i~~~L~~~ 151 (305)
T 2gno_A 98 AANAFLKALEE--PPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVNVPKEFRDLVKEK 151 (305)
T ss_dssp HHHHTHHHHHS--CCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCCeEEEEEECChHhChHHHHce--eEeCCCCCHHHHHHHHHHH
Confidence 33456666763 567888888876666888888888 56665543 344444443
No 21
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=35.39 E-value=4.3e+02 Score=29.91 Aligned_cols=114 Identities=12% Similarity=0.093 Sum_probs=76.4
Q ss_pred CCccEEEEeCCCCCchHHHHHHHHHh-cCceeEEeecC------CcCHHHHHHHHHHHhh-cCcEEEeccccchh-----
Q psy12182 763 GNVPAVLCSVPGYDASGRVDDLAAEL-GKQIASIAIGS------AEGFNQADNVINVAVR-SGKWVLLKNVHLAP----- 829 (1507)
Q Consensus 763 ~~tPiifils~G~DP~~~i~~lA~~~-~~~~~~ISLG~------gq~~~~Ae~~I~~a~~-~G~WVlLqN~HLa~----- 829 (1507)
+..++++.-.||+-=|.....+|++. +..+..|+... |+.......+.+.|.. +..-|+|.++|-..
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~ 123 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE 123 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSS
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccccc
Confidence 44579999999999999999999987 66676666432 3333344555555544 45689999998541
Q ss_pred -------hhHHHHHHHHhccC-CCCceeEEEEcccCCCCcHHHHhcce-EEEecCc
Q psy12182 830 -------QWLVQLEKKLHSLQ-PHANFRLFLTMEINPKVPVNLLRAGR-IFVFEPP 876 (1507)
Q Consensus 830 -------swl~~Le~~l~~~~-~h~~FRLwLTsep~~~fP~~lLq~s~-Kit~E~P 876 (1507)
.-+..|...+..+. ...++.++.++.....++..++++.- .+.+.+|
T Consensus 124 ~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P 179 (322)
T 1xwi_A 124 NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLP 179 (322)
T ss_dssp CCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCC
T ss_pred ccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCc
Confidence 12333444444443 35778888888888889999999874 4444444
No 22
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=33.08 E-value=3.5e+02 Score=29.14 Aligned_cols=184 Identities=14% Similarity=0.176 Sum_probs=106.8
Q ss_pred CccEEEEeCCCCCchHHHHHHHHHhcCceeEEeecC------CcCHHHHHHHHHHHhhc-CcEEEeccccchh-------
Q psy12182 764 NVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGS------AEGFNQADNVINVAVRS-GKWVLLKNVHLAP------- 829 (1507)
Q Consensus 764 ~tPiifils~G~DP~~~i~~lA~~~~~~~~~ISLG~------gq~~~~Ae~~I~~a~~~-G~WVlLqN~HLa~------- 829 (1507)
..+++++-.||+-=|..+..+|...+..+..++... |++......+++.|... ..-+++.++|...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~ 124 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGL 124 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTS
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCc
Confidence 346899999999888888899988876666665322 22323345566666543 3578899985331
Q ss_pred --------hhHHHHHHHHhccCCCCceeEEEEcccCCCCcHHHHhc---ceEEEecCch-hHHHHHHHHhc-cCCcchhc
Q psy12182 830 --------QWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRA---GRIFVFEPPP-GIKANLLRTFS-TVPATRMM 896 (1507)
Q Consensus 830 --------swl~~Le~~l~~~~~h~~FRLwLTsep~~~fP~~lLq~---s~Kit~E~P~-glk~nl~r~~~-~~~~~~~~ 896 (1507)
..+..+-+.++....+.+++++.++.....++..+++. ...+.+.+|+ .-|..+.+.+. ..+ +.
T Consensus 125 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~---l~ 201 (257)
T 1lv7_A 125 GGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP---LA 201 (257)
T ss_dssp CCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC---BC
T ss_pred CCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC---CC
Confidence 12333333444445567788888888878888888862 3556665543 23444444442 111 00
Q ss_pred CCchHHHhhhHHHHHHHHHHHHHhhccCCCcccccccCHhHHHHHHHHHHHHHHhhcCCCCCCCCCCCChHHHHHHHhhc
Q psy12182 897 KAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMGRTNLPPEKIPWNALITLLSQS 976 (1507)
Q Consensus 897 ~~~~~~~rllf~L~~fHavl~ERrkfgplGWn~~YeFn~sDl~~s~~~l~~~l~~~~~~~~~~~~~~ipw~~Lr~li~ei 976 (1507)
. ..... . +.+ .| -.||-.|+...++....+.... + ...|..+.+...+.++
T Consensus 202 ~-~~~~~-------~----la~-------~~---~G~~~~dl~~l~~~a~~~a~~~--~-----~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 202 P-DIDAA-------I----IAR-------GT---PGFSGADLANLVNEAALFAARG--N-----KRVVSMVEFEKAKDKI 252 (257)
T ss_dssp T-TCCHH-------H----HHH-------TC---TTCCHHHHHHHHHHHHHHHHHT--T-----CSSBCHHHHHHHHHHH
T ss_pred c-cccHH-------H----HHH-------Hc---CCCCHHHHHHHHHHHHHHHHHh--C-----CCcccHHHHHHHHHHH
Confidence 0 00000 0 110 12 2478889987776554332211 1 2467788888888887
Q ss_pred ccc
Q psy12182 977 IYG 979 (1507)
Q Consensus 977 ~YG 979 (1507)
.+|
T Consensus 253 ~~~ 255 (257)
T 1lv7_A 253 MMG 255 (257)
T ss_dssp TTC
T ss_pred hcC
Confidence 776
No 23
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=32.18 E-value=2.3e+02 Score=32.70 Aligned_cols=114 Identities=12% Similarity=0.115 Sum_probs=74.4
Q ss_pred CCccEEEEeCCCCCchHHHHHHHHHhcCceeEEeecC------CcCHHHHHHHHHHHhh-cCcEEEeccccchh------
Q psy12182 763 GNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGS------AEGFNQADNVINVAVR-SGKWVLLKNVHLAP------ 829 (1507)
Q Consensus 763 ~~tPiifils~G~DP~~~i~~lA~~~~~~~~~ISLG~------gq~~~~Ae~~I~~a~~-~G~WVlLqN~HLa~------ 829 (1507)
+..+++|+-.||+-=|.....+|++.+..+..|+... |+.......+++.|.. .+.-|+|..+|...
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~ 162 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG 162 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC-----
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC
Confidence 3457999999999999999999999988777776432 2222234445555543 56789999998543
Q ss_pred ------hhHHHHHHHHhccC-CCCceeEEEEcccCCCCcHHHHhcceE-EEecCc
Q psy12182 830 ------QWLVQLEKKLHSLQ-PHANFRLFLTMEINPKVPVNLLRAGRI-FVFEPP 876 (1507)
Q Consensus 830 ------swl~~Le~~l~~~~-~h~~FRLwLTsep~~~fP~~lLq~s~K-it~E~P 876 (1507)
.....|-..++.+. ...+++++.+++....++..++++.-+ +.+.+|
T Consensus 163 ~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P 217 (355)
T 2qp9_X 163 ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLP 217 (355)
T ss_dssp -CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCC
T ss_pred cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCc
Confidence 13344444454443 356788888888877888999987744 444433
No 24
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=29.99 E-value=3.2e+02 Score=30.47 Aligned_cols=112 Identities=13% Similarity=0.172 Sum_probs=76.5
Q ss_pred CCccEEEEeCCCCCchHHHHHHHHHhcCceeEEee--------cCCcCHHHHHHHHHHHhh-cCcEEEeccccchhh---
Q psy12182 763 GNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAI--------GSAEGFNQADNVINVAVR-SGKWVLLKNVHLAPQ--- 830 (1507)
Q Consensus 763 ~~tPiifils~G~DP~~~i~~lA~~~~~~~~~ISL--------G~gq~~~~Ae~~I~~a~~-~G~WVlLqN~HLa~s--- 830 (1507)
+..+++++-.||+-=|.....+|...+..+..|+. |..+. ....+++.|.. ...-++|.+++....
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~--~~~~~f~~a~~~~p~il~iDEid~l~~~~~ 125 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEA--NVREIFDKARQAAPCVLFFDELDSIAKARG 125 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTT--HHHHHHHHHHHTCSEEEEECSTTHHHHHHT
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHH--HHHHHHHHHHhcCCeEEEEEChHHHhhccC
Confidence 44578999999998898899999988777666652 33322 34556666654 456889999984321
Q ss_pred ------------hHHHHHHHHhccCCCCceeEEEEcccCCCCcHHHHh--cc-eEEEecCc
Q psy12182 831 ------------WLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLR--AG-RIFVFEPP 876 (1507)
Q Consensus 831 ------------wl~~Le~~l~~~~~h~~FRLwLTsep~~~fP~~lLq--~s-~Kit~E~P 876 (1507)
.+..|-+.++.+....+.+++.+++....++..+++ +. ..+.+.+|
T Consensus 126 ~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p 186 (301)
T 3cf0_A 126 GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 186 (301)
T ss_dssp TTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCC
T ss_pred CCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCc
Confidence 244555556666667789999999887788888887 33 34555444
No 25
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=29.74 E-value=2.3e+02 Score=29.81 Aligned_cols=71 Identities=20% Similarity=0.221 Sum_probs=44.3
Q ss_pred EEEEeCCCCCchHHHH-HHHHHhcCceeEEeecCCcCHHHHHH-HHHHHhhcCcEEEecc--ccchhhhHHHHHHHHhc
Q psy12182 767 AVLCSVPGYDASGRVD-DLAAELGKQIASIAIGSAEGFNQADN-VINVAVRSGKWVLLKN--VHLAPQWLVQLEKKLHS 841 (1507)
Q Consensus 767 iifils~G~DP~~~i~-~lA~~~~~~~~~ISLG~gq~~~~Ae~-~I~~a~~~G~WVlLqN--~HLa~swl~~Le~~l~~ 841 (1507)
+|++-....|.+.++. +++. ...++..+. ....|...|.+ .|+.| +|.||++=| +-+.+.|+..+.+.++.
T Consensus 37 iIvvDd~S~d~t~~~~~~~~~-~~~~i~~i~-~~n~G~~~a~N~g~~~a--~g~~i~~lD~Dd~~~~~~l~~l~~~~~~ 111 (240)
T 3bcv_A 37 IILIDDESPDNCPKICDDYAA-QYPNIKVIH-KKNAGLGMACNSGLDVA--TGEYVAFCDSDDYVDSDMYMTMYNVAQK 111 (240)
T ss_dssp EEEEECCCSSSHHHHHHHHHH-HCSSEEEEE-CCCCCHHHHHHHHHHHC--CSSEEEECCTTCCCCTTHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh-hCCCEEEEE-CCCCChHHHHHHHHHHc--CCCEEEEECCCCcCCHHHHHHHHHHHHh
Confidence 5555544457776544 3443 334566675 45566544443 34444 899999954 45778899998887764
No 26
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=28.86 E-value=79 Score=39.13 Aligned_cols=114 Identities=15% Similarity=0.170 Sum_probs=73.8
Q ss_pred CccEEEEeCCCCCchHHHHHHHHHhcCceeEEeecCCcC---------------HHHHHHHHHHHhhcCcEEEeccccch
Q psy12182 764 NVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEG---------------FNQADNVINVAVRSGKWVLLKNVHLA 828 (1507)
Q Consensus 764 ~tPiifils~G~DP~~~i~~lA~~~~~~~~~ISLG~gq~---------------~~~Ae~~I~~a~~~G~WVlLqN~HLa 828 (1507)
...++|+-+||+==|.....+|...+..+..|+++.-.. .......+..|...+.-++|..+|-.
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l 187 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKM 187 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSEEEEEEESSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhh
Confidence 446788888899888888888888877777777664211 01122345556666778888888744
Q ss_pred hh-hH----HHHHHHHhcc-----CCC--------CceeEEEEcccCCCCcHHHHhcceEEEecCch
Q psy12182 829 PQ-WL----VQLEKKLHSL-----QPH--------ANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP 877 (1507)
Q Consensus 829 ~s-wl----~~Le~~l~~~-----~~h--------~~FRLwLTsep~~~fP~~lLq~s~Kit~E~P~ 877 (1507)
.. .- ..|-+.++.. ..| +++++..|+.+...||..|+.++..+.+.+|+
T Consensus 188 ~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~ 254 (543)
T 3m6a_A 188 SSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYT 254 (543)
T ss_dssp C---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCCC
T ss_pred hhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcceeeeCCCC
Confidence 32 11 1222222211 111 67899999999999999999999877777664
No 27
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=26.98 E-value=71 Score=32.25 Aligned_cols=110 Identities=15% Similarity=0.232 Sum_probs=68.3
Q ss_pred CccEEEEeCCCCCchHHHHHHHHHh----------cCceeEEeecCC----cCHH----HHHHHHHHHhh--cCcEEEec
Q psy12182 764 NVPAVLCSVPGYDASGRVDDLAAEL----------GKQIASIAIGSA----EGFN----QADNVINVAVR--SGKWVLLK 823 (1507)
Q Consensus 764 ~tPiifils~G~DP~~~i~~lA~~~----------~~~~~~ISLG~g----q~~~----~Ae~~I~~a~~--~G~WVlLq 823 (1507)
..+++++-.+|+==|..+..+|+.. +..+..++++.- .... .....++...+ .+..|+|.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iD 122 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFID 122 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEE
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence 4568888888988888888888875 344555553321 1111 12233443333 24479999
Q ss_pred cccchh---------hhHHHHHHHHhccCCCCceeEEEEcccCC-----CCcHHHHhcceEEEecCch
Q psy12182 824 NVHLAP---------QWLVQLEKKLHSLQPHANFRLFLTMEINP-----KVPVNLLRAGRIFVFEPPP 877 (1507)
Q Consensus 824 N~HLa~---------swl~~Le~~l~~~~~h~~FRLwLTsep~~-----~fP~~lLq~s~Kit~E~P~ 877 (1507)
++|... .....|...++ +.++++.+++.... .++..+++++..+.+++|+
T Consensus 123 e~~~l~~~~~~~~~~~~~~~l~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~ 186 (195)
T 1jbk_A 123 ELHTMVGAGKADGAMDAGNMLKPALA----RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPS 186 (195)
T ss_dssp TGGGGTT------CCCCHHHHHHHHH----TTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCC
T ss_pred CHHHHhccCcccchHHHHHHHHHhhc----cCCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCC
Confidence 998653 12333333332 35788888876654 6788999988888887774
No 28
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=25.39 E-value=79 Score=33.47 Aligned_cols=48 Identities=17% Similarity=0.087 Sum_probs=25.6
Q ss_pred EEEEeCCCCCchHHHHHHH---HHhcCceeEEeecCCcCHHHHHHHHHHHhh
Q psy12182 767 AVLCSVPGYDASGRVDDLA---AELGKQIASIAIGSAEGFNQADNVINVAVR 815 (1507)
Q Consensus 767 iifils~G~DP~~~i~~lA---~~~~~~~~~ISLG~gq~~~~Ae~~I~~a~~ 815 (1507)
+||+.+++.+....+.++| ++.|.++.+|++|..+.-.. -+.+.++..
T Consensus 110 iil~~~~~~~~~~~~~~~a~~lk~~gi~v~~Ig~G~~~~~~~-l~~la~~~n 160 (192)
T 2x5n_A 110 VAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQNESA-LQHFIDAAN 160 (192)
T ss_dssp EEEECSCCSSCHHHHHHHHHHHHHTTEEEEEEEESCC---CH-HHHHHHHHC
T ss_pred EEEEECCCCCCchhHHHHHHHHHHCCCEEEEEEeCCCCccHH-HHHHHHhcc
Confidence 4555565543233344444 55678899999998764212 444444444
No 29
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=25.32 E-value=3.2e+02 Score=30.80 Aligned_cols=111 Identities=12% Similarity=0.121 Sum_probs=74.2
Q ss_pred CCccEEEEeCCCCCchHHHHHHHHHhcCceeEEeecC------CcCHHHHHHHHHHHhh-cCcEEEeccccchh------
Q psy12182 763 GNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGS------AEGFNQADNVINVAVR-SGKWVLLKNVHLAP------ 829 (1507)
Q Consensus 763 ~~tPiifils~G~DP~~~i~~lA~~~~~~~~~ISLG~------gq~~~~Ae~~I~~a~~-~G~WVlLqN~HLa~------ 829 (1507)
+...++|.-.||+-=|.....+|++.+..+..|+... |+.......+.+.|.. .+.-|+|.++|...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~ 129 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG 129 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC----
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC
Confidence 3456899999999999999999999888888777432 1111123344445544 34688999998442
Q ss_pred ------hhHHHHHHHHhcc-CCCCceeEEEEcccCCCCcHHHHhcceEEEe
Q psy12182 830 ------QWLVQLEKKLHSL-QPHANFRLFLTMEINPKVPVNLLRAGRIFVF 873 (1507)
Q Consensus 830 ------swl~~Le~~l~~~-~~h~~FRLwLTsep~~~fP~~lLq~s~Kit~ 873 (1507)
.....|-..+... ....+.++..+++....++..++++.-+..+
T Consensus 130 ~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~ 180 (322)
T 3eie_A 130 ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIY 180 (322)
T ss_dssp --CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEE
T ss_pred cchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEE
Confidence 2334455555554 3566788888888777889888887744443
No 30
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=24.05 E-value=3.5e+02 Score=32.81 Aligned_cols=183 Identities=17% Similarity=0.200 Sum_probs=106.4
Q ss_pred ccEEEEeCCCCCchHHHHHHHHHhcCceeEEeecC------CcCHHHHHHHHHHHhh-cCcEEEeccccchh--------
Q psy12182 765 VPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGS------AEGFNQADNVINVAVR-SGKWVLLKNVHLAP-------- 829 (1507)
Q Consensus 765 tPiifils~G~DP~~~i~~lA~~~~~~~~~ISLG~------gq~~~~Ae~~I~~a~~-~G~WVlLqN~HLa~-------- 829 (1507)
.+++++-.||+==|..+..+|.+.+..+..++..+ |.+......+++.|.. ...-|+|..+|-..
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~ 129 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLG 129 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccC
Confidence 46899999999889889999998888877776432 2222234566777765 45688899887531
Q ss_pred -------hhHHHHHHHHhccCCCCceeEEEEcccCCCCcHHHHhcce---EEEecCchh-HHHHHHHHhc-cCCcchhcC
Q psy12182 830 -------QWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGR---IFVFEPPPG-IKANLLRTFS-TVPATRMMK 897 (1507)
Q Consensus 830 -------swl~~Le~~l~~~~~h~~FRLwLTsep~~~fP~~lLq~s~---Kit~E~P~g-lk~nl~r~~~-~~~~~~~~~ 897 (1507)
.-+..|-..++.+....+.+++.++.....++..+++.+. .+.+.+|.- =|..+.+.+. ..+- .
T Consensus 130 g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l---~- 205 (476)
T 2ce7_A 130 GGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL---A- 205 (476)
T ss_dssp ---CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB---C-
T ss_pred cCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC---c-
Confidence 1233444444444456688999998887788888886443 777776652 2333444442 2110 0
Q ss_pred CchHHHhhhHHHHHHHHHHHHHhhccCCCcccccccCHhHHHHHHHHHHHHHHhhcCCCCCCCCCCCChHHHHHHHhhcc
Q psy12182 898 APNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMGRTNLPPEKIPWNALITLLSQSI 977 (1507)
Q Consensus 898 ~~~~~~rllf~L~~fHavl~ERrkfgplGWn~~YeFn~sDl~~s~~~l~~~l~~~~~~~~~~~~~~ipw~~Lr~li~ei~ 977 (1507)
...... . +. ++ .-.|+-.|+...++....+.... + ...|..+.+...+..++
T Consensus 206 ~~v~l~----------~-la-~~---------t~G~sgadL~~lv~~Aal~A~~~--~-----~~~I~~~dl~~al~~v~ 257 (476)
T 2ce7_A 206 EDVNLE----------I-IA-KR---------TPGFVGADLENLVNEAALLAARE--G-----RDKITMKDFEEAIDRVI 257 (476)
T ss_dssp TTCCHH----------H-HH-HT---------CTTCCHHHHHHHHHHHHHHHHHT--T-----CSSBCHHHHHHHHHHHC
T ss_pred chhhHH----------H-HH-Hh---------cCCCcHHHHHHHHHHHHHHHHHc--C-----CCeecHHHHHHHHHHHh
Confidence 000010 0 11 11 12456678877666443222211 1 24577788888887777
Q ss_pred cc
Q psy12182 978 YG 979 (1507)
Q Consensus 978 YG 979 (1507)
.|
T Consensus 258 ~~ 259 (476)
T 2ce7_A 258 AG 259 (476)
T ss_dssp --
T ss_pred cC
Confidence 76
No 31
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=23.60 E-value=2e+02 Score=31.85 Aligned_cols=94 Identities=17% Similarity=0.176 Sum_probs=58.1
Q ss_pred CCccEEEEeCCCCCchHHHHHHHHHh---cCceeEEeecCCcCHHHHH---------------HHHHHHh--hcCcEEEe
Q psy12182 763 GNVPAVLCSVPGYDASGRVDDLAAEL---GKQIASIAIGSAEGFNQAD---------------NVINVAV--RSGKWVLL 822 (1507)
Q Consensus 763 ~~tPiifils~G~DP~~~i~~lA~~~---~~~~~~ISLG~gq~~~~Ae---------------~~I~~a~--~~G~WVlL 822 (1507)
+..|++|+-.||+-=+.....+|+.. +..+..+.++.-....... ..+..+. ..|..++|
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~l 125 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILF 125 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEE
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEE
Confidence 34588999999998888888888875 3346666554322110011 1233333 35679999
Q ss_pred ccccchh-hhHHHHHHHHhccC------CCCcee---EEEEccc
Q psy12182 823 KNVHLAP-QWLVQLEKKLHSLQ------PHANFR---LFLTMEI 856 (1507)
Q Consensus 823 qN~HLa~-swl~~Le~~l~~~~------~h~~FR---LwLTsep 856 (1507)
.+++... .-...|-+.++... ...+|| +++|+..
T Consensus 126 DEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~ 169 (311)
T 4fcw_A 126 DAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNL 169 (311)
T ss_dssp ETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEEST
T ss_pred eChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEeccc
Confidence 9998654 45556666665421 123556 9999887
No 32
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=21.53 E-value=4.7e+02 Score=29.55 Aligned_cols=109 Identities=19% Similarity=0.254 Sum_probs=71.9
Q ss_pred EEEEeCCCCCchHHHHHHHHHhc-C----ceeEEeecCCcCHHHHHHHHHHHhh-------cCcEEEeccccchh-hhHH
Q psy12182 767 AVLCSVPGYDASGRVDDLAAELG-K----QIASIAIGSAEGFNQADNVINVAVR-------SGKWVLLKNVHLAP-QWLV 833 (1507)
Q Consensus 767 iifils~G~DP~~~i~~lA~~~~-~----~~~~ISLG~gq~~~~Ae~~I~~a~~-------~G~WVlLqN~HLa~-swl~ 833 (1507)
++|+-++|+-=|..+..+|+... . .+..+......+.+..+..+....+ ...-+++.++|... .=..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~ 128 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQN 128 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHH
Confidence 78888889888888999998752 1 2333333332344445555554432 24667889998654 3334
Q ss_pred HHHHHHhccCCCCceeEEEEcccCCCCcHHHHhcceEEEecCch
Q psy12182 834 QLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP 877 (1507)
Q Consensus 834 ~Le~~l~~~~~h~~FRLwLTsep~~~fP~~lLq~s~Kit~E~P~ 877 (1507)
.|-+.++. +.++-++.+++.....++..+.++|..+.+.+++
T Consensus 129 ~L~~~le~--~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~ 170 (340)
T 1sxj_C 129 ALRRVIER--YTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLP 170 (340)
T ss_dssp HHHHHHHH--TTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC
T ss_pred HHHHHHhc--CCCCeEEEEEecCccccchhHHhhceeEeccCCC
Confidence 56566654 3456678888887778889999999988877654
No 33
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=21.41 E-value=5.7e+02 Score=27.95 Aligned_cols=108 Identities=13% Similarity=0.115 Sum_probs=67.8
Q ss_pred CCccEEEEeCCCCCchHHHHHHHHHhcCceeEEeecCC------cCHHHHHHHHHHHhh-cCcEEEeccccchh------
Q psy12182 763 GNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSA------EGFNQADNVINVAVR-SGKWVLLKNVHLAP------ 829 (1507)
Q Consensus 763 ~~tPiifils~G~DP~~~i~~lA~~~~~~~~~ISLG~g------q~~~~Ae~~I~~a~~-~G~WVlLqN~HLa~------ 829 (1507)
+..++++.-.||+-=|..+..+|++.+..+..++.+.- ++......++..+.. .+.-|+|..+|...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~ 132 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS 132 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC---
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC
Confidence 35578999999999999999999998877777775431 121233344454543 56789999997542
Q ss_pred ------hhHHHHHHHHhccCCC---CceeEEEEcccCCCCcHHHHhcceE
Q psy12182 830 ------QWLVQLEKKLHSLQPH---ANFRLFLTMEINPKVPVNLLRAGRI 870 (1507)
Q Consensus 830 ------swl~~Le~~l~~~~~h---~~FRLwLTsep~~~fP~~lLq~s~K 870 (1507)
.....|-..++....+ .+.++..++.....++..++++...
T Consensus 133 ~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~ 182 (297)
T 3b9p_A 133 EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTK 182 (297)
T ss_dssp --CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCE
T ss_pred cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCe
Confidence 1222343444443322 4567777777666778888876643
No 34
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=20.83 E-value=4e+02 Score=30.54 Aligned_cols=109 Identities=13% Similarity=0.050 Sum_probs=71.0
Q ss_pred CCccEEEEeCCCCCchHHHHHHHHHhcCceeEEeecCC------cCHHHHHHHHHHHhh-cCcEEEeccccchh------
Q psy12182 763 GNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSA------EGFNQADNVINVAVR-SGKWVLLKNVHLAP------ 829 (1507)
Q Consensus 763 ~~tPiifils~G~DP~~~i~~lA~~~~~~~~~ISLG~g------q~~~~Ae~~I~~a~~-~G~WVlLqN~HLa~------ 829 (1507)
+..+++|.-.||+-=|..+..+|++.+..+..|+...- +.......++..+.. .+.-|+|..+|...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~ 195 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG 195 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC----
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC
Confidence 45579999999999899999999998887777765432 111123334444443 45789999987431
Q ss_pred ------hhHHHHHHHHhccC--CCCceeEEEEcccCCCCcHHHHhcceEE
Q psy12182 830 ------QWLVQLEKKLHSLQ--PHANFRLFLTMEINPKVPVNLLRAGRIF 871 (1507)
Q Consensus 830 ------swl~~Le~~l~~~~--~h~~FRLwLTsep~~~fP~~lLq~s~Ki 871 (1507)
..+..|...++... .+.+++++.++.....++..++++..+.
T Consensus 196 ~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~ 245 (357)
T 3d8b_A 196 EHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKR 245 (357)
T ss_dssp --CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEE
T ss_pred cchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceE
Confidence 22334444444432 3567888888887777888888877543
Done!