RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12182
(1507 letters)
>gnl|CDD|217325 pfam03028, Dynein_heavy, Dynein heavy chain and region D6 of dynein
motor. This family represents the C-terminal region of
dynein heavy chain. The chain also contains ATPase
activity and microtubule binding ability and acts as a
motor for the movement of organelles and vesicles along
microtubules. Dynein is also involved in cilia and
flagella movement. The dynein subunit consists of at
least two heavy chains and a number of intermediate and
light chains. The 380 kDa motor unit of dynein belongs to
the AAA class of chaperone-like ATPases. The core of the
380 kDa motor unit contains a concatenated chain of six
AAA modules, of which four correspond to the ATP binding
sites with P-loop signatures described previously, and
two are modules in which the P loop has been lost in
evolution. This C-terminal domain carries the D6 region
of the dynein motor where the P-loop has been lost in
evolution but the general structure of a potential ATP
binding site appears to be retained.
Length = 706
Score = 663 bits (1712), Expect = 0.0
Identities = 241/694 (34%), Positives = 353/694 (50%), Gaps = 51/694 (7%)
Query: 687 TKQSTPEQCVPKLWEEEKSFSETAVAMYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLS 746
++ E+ +P+ W++ KS A +LL ++ALR DR+ AA FVS GE F+
Sbjct: 49 DSEAPEEEKLPQEWKDRKS------AFQKLLLLRALRPDRMTYAARNFVSEKLGEKFVEP 102
Query: 747 AERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELG--KQIASIAIGSAEGFN 804
+ LDL I E E + P PG D S V+ LA ++G K+ S+++G +G
Sbjct: 103 --QPLDLSKIYE-ESSPSTPIFFILSPGVDPSKDVEKLAKKMGFGKKFHSVSLGQGQGP- 158
Query: 805 QADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQP--HANFRLFLTMEINPKVPV 862
A+ I A +SG WV+L+N+HLAP WL LEKKL SL P H +FRLFLT E P +P+
Sbjct: 159 IAEKAIETAAKSGHWVMLQNIHLAPSWLPTLEKKLESLTPGSHPDFRLFLTAEPAPSIPI 218
Query: 863 NLLRAGRIFVFEPPPGIKANLLRTFSTV--PATRMMKAPNERARLYFLLAWFHAIVQERL 920
LL+ EPP G+KANLLR S+ M K P E R+ FLL +FHA+VQER
Sbjct: 219 GLLQNSIKITNEPPTGLKANLLRALSSFTQETLEMCKKPAEFKRILFLLCFFHAVVQERR 278
Query: 921 RYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMGRTNLPPEKIPWNALITLLSQSIYGG 980
++ PLGW+K YEFNE DLR++ D LD ++D+ A P+K+PW L L + +YGG
Sbjct: 279 KFGPLGWNKSYEFNEGDLRISLDVLDNYLDANA-------PDKVPWEDLRYLFGEIMYGG 331
Query: 981 KIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIESLP 1040
+I +D+D+RLL ++L + FT R F+ + L G +P GT + +L +IE LP
Sbjct: 332 RITDDWDRRLLRTYLEEFFTPRLFDPELELAPGDLG----FAVPPGTDYEGYLQYIEELP 387
Query: 1041 DRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFAYTEANENKTEERNVDGR 1100
+P W GL +AE LT + L+ LL++Q E + E +
Sbjct: 388 PESSPEWYGLHPNAEIGFLTQQTEKLIRTLLELQPREAGGSGGSGVSRE--------EVV 439
Query: 1101 PAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLED 1160
+R + +L P L+RT E IKDPL+R +E+ LL+++ L++
Sbjct: 440 KQVLRDIL---EKLPKLFPIEEIKLKRT-EEIKDPLFRVLFQEIERMNKLLKEIRRSLKE 495
Query: 1161 VILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVS 1220
+ L G TN L L KG +PA W + + P + WVTD RI QLQ +
Sbjct: 496 LDLGLKGELTMTNDLEDLAKALFKGRVPASWAKLAYPSLKPLGSWVTDLLRRIRQLQDWT 555
Query: 1221 LLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEK 1280
K VWL G FNP++++TA Q +A N W L++L L +T + E
Sbjct: 556 -------EDFGKPKTVWLSGFFNPQSFLTAIMQSVARKNKWPLDKLCLQTDVTKKEKEEF 608
Query: 1281 INTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDL----PVTLVRWVKVESETRQDKLSL 1336
+ F V GL L+GA+ +L + +L PV V+ V + + +
Sbjct: 609 DSAPRDGFYVHGLFLEGARWDGQNGLLLESRPKELFSPMPVIWVKAVPADKQEEKSVYEC 668
Query: 1337 PVYLNSTRTELLFNVDLNITSGQDPHSFYQRGGL 1370
PVY TR + + + + P S + G+
Sbjct: 669 PVYKTETRGGTTYVFTFLLKTKEPP-SKWILAGV 701
Score = 308 bits (791), Expect = 5e-90
Identities = 118/388 (30%), Positives = 182/388 (46%), Gaps = 29/388 (7%)
Query: 8 PEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRH 67
P+K+PW L L + +YGG+I +D+D+RLL ++L + FT R F+ + L G
Sbjct: 312 PDKVPWEDLRYLFGEIMYGGRITDDWDRRLLRTYLEEFFTPRLFDPELELAPGDLG---- 367
Query: 68 INMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDED 127
+P GT + +L +IE LP +P W GL +AE LT + L+ LL++Q E
Sbjct: 368 FAVPPGTDYEGYLQYIEELPPESSPEWYGLHPNAEIGFLTQQTEKLIRTLLELQPREAGG 427
Query: 128 EFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYF 187
+ E + +R + +L P L+RT E IKDPL+R
Sbjct: 428 SGGSGVSRE--------EVVKQVLRDIL---EKLPKLFPIEEIKLKRT-EEIKDPLFRVL 475
Query: 188 EREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGC 247
+E+ LL+++ L+++ L G TN L L KG +PA W + + P
Sbjct: 476 FQEIERMNKLLKEIRRSLKELDLGLKGELTMTNDLEDLAKALFKGRVPASWAKLAYPSLK 535
Query: 248 TVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANG 307
+ WVTD RI QLQ + K VWL G FNP++++TA Q +A N
Sbjct: 536 PLGSWVTDLLRRIRQLQDWT-------EDFGKPKTVWLSGFFNPQSFLTAIMQSVARKNK 588
Query: 308 WSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDL----P 363
W L++L L +T + E + F V GL L+GA+ +L + +L P
Sbjct: 589 WPLDKLCLQTDVTKKEKEEFDSAPRDGFYVHGLFLEGARWDGQNGLLLESRPKELFSPMP 648
Query: 364 VTLMQQLE--DEDEFAYTEANENKTEER 389
V ++ + ++E + E KTE R
Sbjct: 649 VIWVKAVPADKQEEKSVYECPVYKTETR 676
Score = 178 bits (453), Expect = 3e-46
Identities = 69/246 (28%), Positives = 106/246 (43%), Gaps = 19/246 (7%)
Query: 364 VTLMQQLEDEDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTV 423
+ +Q E + E + +R + +L P L+RT
Sbjct: 417 LLELQPREAGGSGGSGVSRE--------EVVKQVLRDIL---EKLPKLFPIEEIKLKRT- 464
Query: 424 ENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPA 483
E IKDPL+R +E+ LL+++ L+++ L G TN L L KG +PA
Sbjct: 465 EEIKDPLFRVLFQEIERMNKLLKEIRRSLKELDLGLKGELTMTNDLEDLAKALFKGRVPA 524
Query: 484 RWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYIT 543
W + + P + WVTD RI QLQ + K VWL G FNP++++T
Sbjct: 525 SWAKLAYPSLKPLGSWVTDLLRRIRQLQDWT-------EDFGKPKTVWLSGFFNPQSFLT 577
Query: 544 ATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTS 603
A Q +A N W L++L L +T + E + F V GL L+GA+ +L
Sbjct: 578 AIMQSVARKNKWPLDKLCLQTDVTKKEKEEFDSAPRDGFYVHGLFLEGARWDGQNGLLLE 637
Query: 604 TILMDL 609
+ +L
Sbjct: 638 SRPKEL 643
Score = 114 bits (287), Expect = 1e-25
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 4/138 (2%)
Query: 1368 GGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGA 1427
G FNP++++TA Q +A N W L++L L +T + E + F V GL L+GA
Sbjct: 567 SGFFNPQSFLTAIMQSVARKNKWPLDKLCLQTDVTKKEKEEFDSAPRDGFYVHGLFLEGA 626
Query: 1428 QCRNNELVLTSTILMDL----PVTLVRWVKVESETRQDKLSLPVYLNSTRTELLFNVDLN 1483
+ +L + +L PV V+ V + + + PVY TR +
Sbjct: 627 RWDGQNGLLLESRPKELFSPMPVIWVKAVPADKQEEKSVYECPVYKTETRGGTTYVFTFL 686
Query: 1484 ITSGQDPHSFYQRGVALL 1501
+ + + P + GVALL
Sbjct: 687 LKTKEPPSKWILAGVALL 704
>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton].
Length = 3164
Score = 97.8 bits (243), Expect = 4e-20
Identities = 48/264 (18%), Positives = 78/264 (29%), Gaps = 14/264 (5%)
Query: 797 IGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQL-----EKKLHSLQPHANFRLF 851
+GS E A + + W + N+ L+ W + S ++
Sbjct: 2897 LGSKENEVYAVLNSLFSRKEKSWFEVYNISLSFGWFKRYVEDVVYPIKASRVCGKVKNMW 2956
Query: 852 LTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPATRMMKAPNERARLYFLLAW 911
+M +P+ LL A FV P F L+W
Sbjct: 2957 TSMVDADMLPIQLLIAIDSFVSSTYPETGCGYADLVEIDRYPFDY-TLVIACDDAFYLSW 3015
Query: 912 FHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMGRTNLPPEKIPWNALIT 971
HA V + P ++ F + D L + + N W
Sbjct: 3016 EHAAVASVISAGPKENNEEIYFGDKDFEFKTHLLKNIL---FLNHLN----ARKWGNNRD 3068
Query: 972 LLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDH 1031
L+ +YG K D +++ + + A V D +M + R
Sbjct: 3069 LIFTIVYGKKHSLMEDSKVVDKYCRGYGAHETSSQILASVPGGDPELVKFHMEEMCRSSA 3128
Query: 1032 FLHWIESLPDRQTPSWLGLPNSAE 1055
F I LPD +WL P +E
Sbjct: 3129 FGV-IGQLPDLALCAWLMGPCDSE 3151
Score = 32.7 bits (74), Expect = 2.0
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 1/94 (1%)
Query: 9 EKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHI 68
W L+ +YG K D +++ + + A V D
Sbjct: 3059 NARKWGNNRDLIFTIVYGKKHSLMEDSKVVDKYCRGYGAHETSSQILASVPGGDPELVKF 3118
Query: 69 NMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAE 102
+M + R F I LPD +WL P +E
Sbjct: 3119 HMEEMCRSSAFGV-IGQLPDLALCAWLMGPCDSE 3151
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 35.0 bits (80), Expect = 0.39
Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 34/134 (25%)
Query: 761 LRGNVPAVLCSVPGYDASGR-------VDDLAAELGKQIASIAIGSAE------GFNQAD 807
L + +VP Y GR + +L E G++I I + G +
Sbjct: 139 LAKEAVDLKIAVPIYLEGGRGSGKSFLISELCDEGGQRIVEIHLREITDAKVLIGTYTSP 198
Query: 808 N---------VINVAVRSGKWVLLKNVHLAP----QWLVQLEKKLHSLQP--------HA 846
V+ AV SG W+L K + AP +L+ L +K L P H
Sbjct: 199 KPGDFEWMKGVLIEAVVSGDWILFKRIDKAPHGVLSYLLTLLEKRRLLIPSRGETVLAHD 258
Query: 847 NFRLFLTMEINPKV 860
NF++F T + K+
Sbjct: 259 NFQIFFTSSMKTKI 272
Score = 32.7 bits (74), Expect = 2.4
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 18/72 (25%)
Query: 803 FNQADNVINVAVRSGKWVLLKNVHLA--------------PQWLVQLEKK--LHSLQPHA 846
F + ++ +R+G+W+LL ++LA + + L + L ++ H
Sbjct: 622 FVFVEGILVKCMRNGEWLLLDEINLASEETLELIDGLLGKKESGILLSESGDLRPIRIHP 681
Query: 847 NFRLFLTMEINP 858
FRLF M NP
Sbjct: 682 GFRLFGCM--NP 691
>gnl|CDD|105695 PRK12491, PRK12491, pyrroline-5-carboxylate reductase; Reviewed.
Length = 272
Score = 30.8 bits (69), Expect = 4.6
Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 13/155 (8%)
Query: 596 NNELVLTSTILMDLPVTLNYNPPQISAFVLDINTQGIIQINVFGLKGIPSIQNLDDEFNF 655
NNE+ ++ IL+ L+ P S+ + I Q + V + SI++ ++EF+
Sbjct: 57 NNEVANSADILI-----LSIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDR 111
Query: 656 FLRGKEGILNVKPSTVEGLSGEQQEALQRLATKQSTPEQCVPKLWEEEKSFSETAVAMYQ 715
L+ ++ V P+T L GE AL + E+ + ++ F +T V +
Sbjct: 112 KLK----VIRVMPNT-PVLVGEGMSAL---CFNEMVTEKDIKEVLNIFNIFGQTEVVNEK 163
Query: 716 LLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERE 750
L+ + S PA ++F+ A+ A + R+
Sbjct: 164 LMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRK 198
>gnl|CDD|240439 PTZ00491, PTZ00491, major vault protein; Provisional.
Length = 850
Score = 31.1 bits (71), Expect = 6.5
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 735 VSAVFGEAFMLSAEREL---DLPHIVE 758
V AV G+ +ML A EL LP VE
Sbjct: 396 VRAVHGKPYMLGAHEELWEKPLPPNVE 422
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.408
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 77,907,602
Number of extensions: 7835073
Number of successful extensions: 5952
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5930
Number of HSP's successfully gapped: 15
Length of query: 1507
Length of database: 10,937,602
Length adjustment: 109
Effective length of query: 1398
Effective length of database: 6,103,016
Effective search space: 8532016368
Effective search space used: 8532016368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (29.2 bits)