RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12182
(1507 letters)
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 674 bits (1740), Expect = 0.0
Identities = 328/754 (43%), Positives = 463/754 (61%), Gaps = 53/754 (7%)
Query: 650 DDEFNFFLRGKEGILNVK---PSTVEGLSGEQQEALQRLATK------------------ 688
+ E++F L+G + + ++K P LS QQ+ L L +
Sbjct: 2500 ESEWDFLLKGGDNLTSIKETIPQLDSLLSTTQQKWLICLRQQVPSFSKLVDHIQQNSSDW 2559
Query: 689 -----QSTPEQC-VPKLWEEEKSFSETAV-----AMYQLLFIQALRSDRVPAAAHIFVSA 737
+ + +P+ W ++ ++L ++A SDRV +H FV +
Sbjct: 2560 KQFFGKDQVGEPIIPESWIVAQAQLSNQQSTIVSNFRKILLMKAFHSDRVLQYSHSFVCS 2619
Query: 738 VFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAI 797
VFGE F+ + +ELD+ +IVE E++ + P +LCSVPGYDAS +VDDLA +L KQ S AI
Sbjct: 2620 VFGEDFLNT--QELDMANIVEKEVKSSSPLLLCSVPGYDASSKVDDLALQLHKQYKSFAI 2677
Query: 798 GSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQPHANFRLFLTMEIN 857
GS EGF A+ I A +SG WVLLKN+HLAPQWLVQLEKKLHSL PH +FRLF+T EI+
Sbjct: 2678 GSPEGFELAEKSIYAAAKSGTWVLLKNIHLAPQWLVQLEKKLHSLSPHPSFRLFMTSEIH 2737
Query: 858 PKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPATRMMKAPNERARLYFLLAWFHAIVQ 917
P +P NLLR +F +E PPG+KANLL TF +PATRM K P ER+R+YFLLAWFHAI+Q
Sbjct: 2738 PALPANLLRMSNVFSYENPPGVKANLLHTFIGIPATRMDKQPAERSRIYFLLAWFHAIIQ 2797
Query: 918 ERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMGRTNLPPEKIPWNALITLLSQSI 977
ERLRY+PLGW+KF+EFN++DLR A D++D W+D + GR+N+ P+KIPW A+ T+L +I
Sbjct: 2798 ERLRYIPLGWTKFFEFNDADLRGALDSIDYWVDLYSKGRSNIDPDKIPWIAVRTILGSTI 2857
Query: 978 YGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIE 1037
YGG+IDN+FD RLL SFL +LFT +F DF LV ++ +++P+GT R HF+ WIE
Sbjct: 2858 YGGRIDNEFDMRLLYSFLEQLFTPSAFNPDFPLVPSIG-----LSVPEGTTRAHFMKWIE 2912
Query: 1038 SLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFAYTEANENKTEERNV 1097
+LP+ TP WLGLP +AE +LL+ + ++ L KMQ E++ E +K E +
Sbjct: 2913 ALPEISTPIWLGLPENAESLLLSNKARKMINDLQKMQSSEEDGEDDQVSG-SSKKESSSS 2971
Query: 1098 DGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISD 1157
L + + W +LLPK L+ L+RT +NIKDPL+R FERE+S+G L++ + +D
Sbjct: 2972 SSEDKGKAKLRATITEWTKLLPKPLKQLKRTTQNIKDPLFRCFEREISTGGKLVKKITND 3031
Query: 1158 LEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQ 1217
L +++ + SG + TNY R L + + KG++P W YSVP ++ W++DF R+ QL
Sbjct: 3032 LANLLELISGNIKSTNYLRSLTTSISKGIVPKEWKWYSVPETISLSVWISDFSKRMQQLS 3091
Query: 1218 QVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCME 1277
++S + + VWLGGL NPEAYITATRQ ++ NGWSLE L L S +
Sbjct: 3092 EIS------ESSDYSSIQVWLGGLLNPEAYITATRQSASQLNGWSLENLRLHASSLGKIS 3145
Query: 1278 PEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESETRQDK---L 1334
E SF V G+ L+GA N++L T + + + + W + + L
Sbjct: 3146 SE----GGASFNVKGMALEGAVWNNDQLTPTDILSTPISIATLTWKDKDDPIFNNSSSKL 3201
Query: 1335 SLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRG 1368
S+PVYLN TR+ELLF++DL ++YQR
Sbjct: 3202 SVPVYLNETRSELLFSIDLPYDQSTSKQNWYQRS 3235
Score = 303 bits (777), Expect = 2e-83
Identities = 149/366 (40%), Positives = 220/366 (60%), Gaps = 16/366 (4%)
Query: 2 GRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANV 61
GR+N+ P+KIPW A+ T+L +IYGG+IDN+FD RLL SFL +LFT +F DF LV ++
Sbjct: 2835 GRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQLFTPSAFNPDFPLVPSI 2894
Query: 62 DGATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQ 121
+++P+GT R HF+ WIE+LP+ TP WLGLP +AE +LL+ + ++ L KMQ
Sbjct: 2895 G-----LSVPEGTTRAHFMKWIEALPEISTPIWLGLPENAESLLLSNKARKMINDLQKMQ 2949
Query: 122 QLEDEDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKD 181
E++ E +K E + L + + W +LLPK L+ L+RT +NIKD
Sbjct: 2950 SSEEDGEDDQVSG-SSKKESSSSSSEDKGKAKLRATITEWTKLLPKPLKQLKRTTQNIKD 3008
Query: 182 PLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRY 241
PL+R FERE+S+G L++ + +DL +++ + SG + TNY R L + + KG++P W Y
Sbjct: 3009 PLFRCFEREISTGGKLVKKITNDLANLLELISGNIKSTNYLRSLTTSISKGIVPKEWKWY 3068
Query: 242 SVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQC 301
SVP ++ W++DF R+ QL ++S + + VWLGGL NPEAYITATRQ
Sbjct: 3069 SVPETISLSVWISDFSKRMQQLSEIS------ESSDYSSIQVWLGGLLNPEAYITATRQS 3122
Query: 302 IAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMD 361
++ NGWSLE L L S + E SF V G+ L+GA N++L T +
Sbjct: 3123 ASQLNGWSLENLRLHASSLGKISSE----GGASFNVKGMALEGAVWNNDQLTPTDILSTP 3178
Query: 362 LPVTLM 367
+ + +
Sbjct: 3179 ISIATL 3184
Score = 180 bits (459), Expect = 1e-45
Identities = 91/259 (35%), Positives = 139/259 (53%), Gaps = 17/259 (6%)
Query: 354 LTSTILMDLPVTLMQQLEDEDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLP 413
+ + + MQ E++ E +K E + L + + W +LLP
Sbjct: 2941 MINDLQ------KMQSSEEDGEDDQVSG-SSKKESSSSSSEDKGKAKLRATITEWTKLLP 2993
Query: 414 KALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLL 473
K L+ L+RT +NIKDPL+R FERE+S+G L++ + +DL +++ + SG + TNY R L
Sbjct: 2994 KPLKQLKRTTQNIKDPLFRCFEREISTGGKLVKKITNDLANLLELISGNIKSTNYLRSLT 3053
Query: 474 SDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLG 533
+ + KG++P W YSVP ++ W++DF R+ QL ++S + + VWLG
Sbjct: 3054 TSISKGIVPKEWKWYSVPETISLSVWISDFSKRMQQLSEIS------ESSDYSSIQVWLG 3107
Query: 534 GLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQ 593
GL NPEAYITATRQ ++ NGWSLE L L S + E SF V G+ L+GA
Sbjct: 3108 GLLNPEAYITATRQSASQLNGWSLENLRLHASSLGKISSE----GGASFNVKGMALEGAV 3163
Query: 594 CRNNELVLTSTILMDLPVT 612
N++L T + + +
Sbjct: 3164 WNNDQLTPTDILSTPISIA 3182
Score = 133 bits (335), Expect = 4e-31
Identities = 56/154 (36%), Positives = 78/154 (50%), Gaps = 7/154 (4%)
Query: 1355 ITSGQDPHSFYQRGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDD 1414
S GGL NPEAYITATRQ ++ NGWSLE L L S + E
Sbjct: 3094 SESSDYSSIQVWLGGLLNPEAYITATRQSASQLNGWSLENLRLHASSLGKISSE----GG 3149
Query: 1415 CSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESETRQDK---LSLPVYLNS 1471
SF V G+ L+GA N++L T + + + + W + + LS+PVYLN
Sbjct: 3150 ASFNVKGMALEGAVWNNDQLTPTDILSTPISIATLTWKDKDDPIFNNSSSKLSVPVYLNE 3209
Query: 1472 TRTELLFNVDLNITSGQDPHSFYQRGVALLTSTS 1505
TR+ELLF++DL ++YQR V++ + S
Sbjct: 3210 TRSELLFSIDLPYDQSTSKQNWYQRSVSISSWKS 3243
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 337 bits (865), Expect = 3e-94
Identities = 84/433 (19%), Positives = 162/433 (37%), Gaps = 61/433 (14%)
Query: 650 DDEFNFFLRGKEGILNVKPSTVEGLSGEQQEALQRLATKQSTPEQCVPKLWEEEKSFSET 709
+++ + G+L+ V L+ + + LW+ + S
Sbjct: 2315 SEQYKEAVLTMIGVLSESSDGVPKLTVDT--------------NNDLRYLWDYVTTKSYI 2360
Query: 710 AVAMYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVL 769
+ A + F + F + + ++ + +
Sbjct: 2361 S-------------------ALNWFKNEFFVDEWNIADVVANSDNNYFT----------M 2391
Query: 770 CSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAP 829
S D + ++ +LA + + I +GS E N A I+ + G W+LL+N+ ++
Sbjct: 2392 ASERDVDGTFKLIELAKASKESLKIIPLGSIENLNYAQEEISKSKIEGGWILLQNIQMSL 2451
Query: 830 QWL-VQLEKKLHSL---QPHANFRLFLTMEI-NPKVPVNLLRAGRIFVFEPPPGIKANLL 884
W+ L K + + H F++F+T + K+P LL+ FV+E PGI +
Sbjct: 2452 SWVKTYLHKHVEETKAAEEHEKFKMFMTCHLTGDKLPAPLLQRTDRFVYEDIPGILDTVK 2511
Query: 885 RTFSTVPATRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDT 944
+ + + FLL+WFHA++ R R VP G+SK Y FN+ D + A
Sbjct: 2512 DLWGS-QFFTGKISGVWSVYCTFLLSWFHALITARTRLVPHGFSKKYYFNDCDFQFASVY 2570
Query: 945 LDTWIDSTAMGRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSF 1004
L+ + IPW + ++ +YGGKID + D ++ + +F
Sbjct: 2571 LENVLA-------TNSTNNIPWAQVRDHIATIVYGGKIDEEKDLEVVAKLCAHVFC---G 2620
Query: 1005 EADFALVANVDGATRHINMPDGTRRDHFLHWIESL--PDRQTPSWLGLPNSAEKVLLTTR 1062
+ +V V + + R + + P SWL LP + +
Sbjct: 2621 SDNLQIVPGVRIPQPLLQQSEEEERARLTAILSNTIEPADSLSSWLQLPRESILNYERLQ 2680
Query: 1063 GTDLVAKLLKMQQ 1075
++ + ++ Q
Sbjct: 2681 AKEVASSTEQLLQ 2693
Score = 113 bits (285), Expect = 3e-25
Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 5/121 (4%)
Query: 4 TNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDG 63
IPW + ++ +YGGKID + D ++ + +F + +V V
Sbjct: 2576 ATNSTNNIPWAQVRDHIATIVYGGKIDEEKDLEVVAKLCAHVFC---GSDNLQIVPGVRI 2632
Query: 64 ATRHINMPDGTRRDHFLHWIESL--PDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQ 121
+ + R + + P SWL LP + + ++ + ++
Sbjct: 2633 PQPLLQQSEEEERARLTAILSNTIEPADSLSSWLQLPRESILNYERLQAKEVASSTEQLL 2692
Query: 122 Q 122
Q
Sbjct: 2693 Q 2693
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 100 bits (249), Expect = 4e-21
Identities = 128/754 (16%), Positives = 206/754 (27%), Gaps = 285/754 (37%)
Query: 342 LQGAQCRNNELVLTS-----TILMDLPVTLM---QQLEDEDEFAYTEANENKTEERNVDG 393
+ R L L+ +L +P QL+++ F TE D
Sbjct: 1 MDAYSTR--PLTLSHGSLEHVLL--VPTASFFIASQLQEQ--FNKIL--PEPTEGFAADD 52
Query: 394 RPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLE 453
P +T EL+ K L + VE +V +L +++ E
Sbjct: 53 EP----------TTPAELVGKFLGYVSSLVE----------PSKVGQFDQVLNLCLTEFE 92
Query: 454 DVILICSGGKRQTNYHRLL--LSDLVKGMLPAR--WCR--YSVPRGCTVIQWVTDFRLRI 507
+ L + H L L L + + + R
Sbjct: 93 NCYL------EGNDIHALAAKLLQENDTTLVKTKELIKNYI---TARIMAK-------RP 136
Query: 508 IQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEEL------- 560
+ S L G ++ + GG N + Y EEL
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAI-FGGQGNTDDY---------------FEELRDLYQTY 180
Query: 561 ------VLDVSITDCMEPEKINTDDCSFRVVGLK----LQGAQCRNNELVLTSTILMDLP 610
++ S E + D GL L+ ++ L S P
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI-----P 235
Query: 611 VTLNYNPPQISAFVLDINTQGIIQINVFGLKGIPSIQNLDDEFNFFLRGKEGILNVKP-- 668
++ P I G+IQ+ ++ + K +L P
Sbjct: 236 ISC----PLI----------GVIQLA-----------------HYVVTAK--LLGFTPGE 262
Query: 669 --STVEGLSGEQQEALQRLATKQSTPEQCVPKLWEEEKSFSETAVAMYQLLFIQALRSDR 726
S ++G +G Q + +A ++ WE SF + +LF +R
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDS-------WE---SFFVSVRKAITVLFFIGVRCYE 312
Query: 727 V-------PAAAHIFVSAVFGEA-FMLSAERELDLPHIVEH--ELRGNVPAVLCSVPGYD 776
P+ + G MLS L + ++ + ++PA
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSI-SNLTQEQVQDYVNKTNSHLPA--------- 362
Query: 777 ASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLE 836
GKQ+ I++ N A N+ V SG PQ L L
Sbjct: 363 ------------GKQV-EISL-----VNGAKNL----VVSG----------PPQSLYGLN 390
Query: 837 KKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPATRMM 896
L K P L ++ RI P K F +P
Sbjct: 391 LTLRKA----------------KAPSGLDQS-RI----PFSERKLKFSNRF--LPVA--- 424
Query: 897 KAPNERARLYFLLAWFH--------AIVQERLRYVPLGWSK-------FYEFNESDLRVA 941
+P FH ++ + L + ++ + F+ SDLRV
Sbjct: 425 -SP------------FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL 471
Query: 942 CDTLDTWIDSTAMGRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLG--SFLSKLF 999
++ + LP + W + I DF G S L L
Sbjct: 472 SGSI---SERIVDCIIRLP---VKWETTTQFKATHIL------DFGP---GGASGLGVL- 515
Query: 1000 TTRSFEADFALVANVDG--------ATRHINMPD 1025
T R N DG T IN D
Sbjct: 516 THR----------NKDGTGVRVIVAGTLDINPDD 539
Score = 89.7 bits (222), Expect = 6e-18
Identities = 108/582 (18%), Positives = 162/582 (27%), Gaps = 211/582 (36%)
Query: 988 QRLLGSFLSKLFT-TRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIESLPDRQTPS 1046
+L F L T F AD + + FL ++ SL +
Sbjct: 31 SQLQEQFNKILPEPTEGFAADDEPTTPAELVGK------------FLGYVSSLVEPSKVG 78
Query: 1047 WLGLPNSAEKVLLTT---------RGTD---LVAKLLKMQQLEDEDEF----AYTEANEN 1090
++VL G D L AKLL+ Y A
Sbjct: 79 ------QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITA--- 129
Query: 1091 KTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLY----------RYF 1140
R + RP NSA L R V L YF
Sbjct: 130 ----RIMAKRP--FDKKSNSA-------------LFRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 1141 E--REV-SSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVP 1197
E R++ + L+ D+I + LS+L++ +
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAE-----------------TLSELIRT--TLDAEKV-FT 210
Query: 1198 RGCTVIQWVTD--------------FRLRIIQLQQ-VSLLVSQGGAKELKVYPVWL---- 1238
+G +++W+ + +I + Q +V+ AK L P L
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT---AKLLGFTPGELRSYL 267
Query: 1239 -GGLFNPEAYITATRQCIAEANGW-SLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQ 1296
G + + +TA IAE + W S V IT F + G++
Sbjct: 268 KGATGHSQGLVTAV--AIAETDSWESFFVSVRKA-IT------------VLFFI-GVRCY 311
Query: 1297 GAQCRNNELVLTSTILMD------------LPVTLVRWVKVESETRQDKLSLP----VYL 1340
A L +IL D L ++ + +V+ + LP V +
Sbjct: 312 EAYPN---TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI 368
Query: 1341 ---NSTRTELLFNVDLNITSGQDPHSFYQRGGLFNPEAYITATRQCIAEANGWSLEELVL 1397
N + V SG P S Y GL R+ A + L
Sbjct: 369 SLVNGAKN---LVV-----SG-PPQSLY---GL------NLTLRKAKAPSG--------L 402
Query: 1398 DVS-ITDCMEPEKINTDDCSFRVVG------LKLQGAQCRNNELVLTSTILMDLPVTLVR 1450
D S I K + F V L L A + I DL V
Sbjct: 403 DQSRIPFSERKLKFSN---RFLPVASPFHSHL-LVPA---------SDLINKDLVKNNVS 449
Query: 1451 WVKVESETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHS 1492
+ + +PVY T DL + SG
Sbjct: 450 F-------NAKDIQIPVY--DTFD----GSDLRVLSGSISER 478
Score = 88.6 bits (219), Expect = 1e-17
Identities = 101/578 (17%), Positives = 165/578 (28%), Gaps = 213/578 (36%)
Query: 35 QRLLGSFLSKLFT-TRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIESLPDRQTPS 93
+L F L T F AD + + FL ++ SL +
Sbjct: 31 SQLQEQFNKILPEPTEGFAADDEPTTPAELVGK------------FLGYVSSLVEPSKVG 78
Query: 94 WLGLPNSAEKVLLTT---------RGTD---LVAKLLKMQQLEDEDEF----AYTEANEN 137
++VL G D L AKLL+ Y A
Sbjct: 79 ------QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITA--- 129
Query: 138 KTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLY----------RYF 187
R + RP NSA L R V L YF
Sbjct: 130 ----RIMAKRP--FDKKSNSA-------------LFRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 188 E--REV-SSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVP 244
E R++ + L+ D+I + LS+L++ +
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAE-----------------TLSELIRT--TLDAEKV-FT 210
Query: 245 RGCTVIQWVTD--------------FRLRIIQLQQ-VSLLVSQGGAKELKVYPVWL---- 285
+G +++W+ + +I + Q +V+ AK L P L
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT---AKLLGFTPGELRSYL 267
Query: 286 -GGLFNPEAYITATRQCIAEANGW-SLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQ 343
G + + +TA IAE + W S V IT F +G++
Sbjct: 268 KGATGHSQGLVTAV--AIAETDSWESFFVSVRKA-IT------------VLFF-IGVRCY 311
Query: 344 GAQCRNNELVLTSTILMD-------LPVTLM--------QQLEDEDEFAYTEANENKTEE 388
A L +IL D +P + M +Q++D + N +
Sbjct: 312 EAYPN---TSLPPSILEDSLENNEGVP-SPMLSISNLTQEQVQD----YVNKTNSHLPAG 363
Query: 389 RNVDGRPAWMRTLHNSASTWLELL-----PKALQTLRRTVENIKDPL----YR--YFERE 437
+ V+ +L N A L P++L L T+ K P R + ER+
Sbjct: 364 KQVE------ISLVNGAKN----LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK 413
Query: 438 V--------------SSGAALLRD----VISDLEDVILICSG------------GKRQTN 467
+ S LL + DL + + G
Sbjct: 414 LKFSNRFLPVASPFHSH---LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV 470
Query: 468 YHRLLLSDLVKGML--PARWCRYSVPRGCTVIQWVTDF 503
+ +V ++ P +W + T + DF
Sbjct: 471 LSGSISERIVDCIIRLPVKWET-TTQFKAT---HILDF 504
Score = 68.5 bits (167), Expect = 2e-11
Identities = 87/545 (15%), Positives = 143/545 (26%), Gaps = 219/545 (40%)
Query: 840 HSLQP----HANFRL-FLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLR-TF-STVPA 892
+S +P H + L VP A+ L+ F +P
Sbjct: 4 YSTRPLTLSHGSLEHVLL-------VPTASF-------------FIASQLQEQFNKILPE 43
Query: 893 -TRMMKAPNERARLYFLLAWFHAIV------QERLRYVPLGWSKFYEFNESDLR------ 939
T A +E L+ F V + ++ + EF L
Sbjct: 44 PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA 103
Query: 940 VACDTLDTWIDST-------------AMGRTNLPPEKIPWNALITLLSQ------SIYGG 980
+A L D+T A P +K +AL + + +I+GG
Sbjct: 104 LAA-KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 981 --KIDNDFDQRLLGSFLSKLFTT-RSFEADF---------ALVANVDGATRHINMPDGTR 1028
D+ F++ L L+ T D L+ A + G
Sbjct: 163 QGNTDDYFEE------LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF--TQGL- 213
Query: 1029 RDHFLHWIE---SLPDRQ----TP-SW-----------------LGL-PNSAEKVL--LT 1060
+ L W+E + PD+ P S LG P L T
Sbjct: 214 --NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 1061 TRGTDLVAKLLKMQQLEDEDEF--------------------AY----TEANENKTEERN 1096
LV + + + + + F AY + + N
Sbjct: 272 GHSQGLVTAVA-IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN 330
Query: 1097 VDGRPAWM----------------RT-------------LHNSASTWLELL-----PKAL 1122
+G P+ M +T L N A L P++L
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN----LVVSGPPQSL 386
Query: 1123 QTLRRTVENIKDPL----YR--YFEREV--------------SSGAALLRD----VISDL 1158
L T+ K P R + ER++ S LL + DL
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH---LLVPASDLINKDL 443
Query: 1159 EDVILICSG------------GKRQTNYHRLLLSDLVKGML--PARWCRYSVPRGCTVIQ 1204
+ + G + +V ++ P +W + T
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWET-TTQFKAT--- 499
Query: 1205 WVTDF 1209
+ DF
Sbjct: 500 HILDF 504
Score = 61.6 bits (149), Expect = 2e-09
Identities = 119/708 (16%), Positives = 193/708 (27%), Gaps = 270/708 (38%)
Query: 505 LRIIQLQ----QVSLLVSQG---GAKELKVYPVWLGGLFN---PEAYITATRQCIAEANG 554
R + L + LLV A +L+ FN PE T A+
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQ-------EQFNKILPEP----TEGFAADDEP 54
Query: 555 WSLEELV---LDVSITDCMEPEKINTDDCSFRVVGLKLQGAQC---RNNEL-VLTSTILM 607
+ ELV L ++ +EP K+ D +V+ L L + N++ L + +L
Sbjct: 55 TTPAELVGKFLGY-VSSLVEPSKVGQFD---QVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 608 DLPVTL--------NY-----------NPPQISAFVLDINTQGIIQINVFGLKGIPSIQ- 647
+ TL NY + SA + + +FG G Q
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG--G----QG 164
Query: 648 NLDDEFNFF--LRGKEGILNVKPSTVEGLSGEQQEALQRLATKQSTPEQCVPK-----LW 700
N DD +F LR + V L E L L E+ + W
Sbjct: 165 NTDD---YFEELRD---LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 701 EEEKS-------FSETAVAMYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDL 753
E S ++ + IQ AH V+A + L
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQL---------AHYVVTA-----------KLLGF 258
Query: 754 PHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVA 813
G + + L A+G L + ++AI
Sbjct: 259 TP-------GELRSYLKG-----ATGHSQGL-------VTAVAIAE-------------- 285
Query: 814 VRSGKWV-LLKNVHLAPQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIF- 871
+ W +V A LF I +R +
Sbjct: 286 --TDSWESFFVSVRKAITV------------------LFF---IG-------VRCYEAYP 315
Query: 872 VFEPPPGIKANLLRTFSTVPATRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFY 931
PP I + L VP + M L+ + ++
Sbjct: 316 NTSLPPSILEDSLENNEGVP-SPM-------------LS-----IS--------NLTQ-- 346
Query: 932 EFNESDLRVACDTLDTWIDSTAMGRTNLPPEK---I-----PWNALITLLSQSIYG---- 979
+ + +++ T ++LP K I N +++ QS+YG
Sbjct: 347 -----------EQVQDYVNKT---NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392
Query: 980 ---GKIDNDFDQRLLGSFLSKL-FTTR--SFEADFALVANV-------DGATRHINMPDG 1026
K + DQ S++ F+ R F F L A+ I D
Sbjct: 393 LRKAKAPSGLDQ-------SRIPFSERKLKFSNRF-LPVASPFHSHLLVPASDLI-NKDL 443
Query: 1027 TRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFAYTE 1086
+ + + + + +P V T G+DL + L +
Sbjct: 444 VKNN--VSF--------NAKDIQIP-----VYDTFDGSDL-------RVLSGSISERIVD 481
Query: 1087 ANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKD 1134
V W T A+ L+ P L KD
Sbjct: 482 CI---IRLP-VK----WETTTQFKATHILDFGPGGASGLGVLTHRNKD 521
Score = 54.7 bits (131), Expect = 3e-07
Identities = 63/395 (15%), Positives = 105/395 (26%), Gaps = 165/395 (41%)
Query: 4 TNLPPEKIPWNALITLLSQ------SIYGG--KIDNDFDQRLLGSFLSKLFTT-RSFEAD 54
P +K +AL + + +I+GG D+ F++ L L+ T D
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE------LRDLYQTYHVLVGD 186
Query: 55 F---------ALVANVDGATRHINMPDGTRRDHFLHWIE---SLPDRQ----TP-SW--- 94
L+ A + G + L W+E + PD+ P S
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVF--TQGL---NILEWLENPSNTPDKDYLLSIPISCPLI 241
Query: 95 --------------LGL-PNSAEKVL--LTTRGTDLVAKLLKMQQLEDEDEF-------- 129
LG P L T LV + + + + + F
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA-IAETDSWESFFVSVRKAI 300
Query: 130 ------------AY----TEANENKTEERNVDGRPAWM----------------RT---- 153
AY + + N +G P+ M +T
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 154 ---------LHNSASTWLELL-----PKALQTLRRTVENIKDPL----YR--YFEREV-- 191
L N A L P++L L T+ K P R + ER++
Sbjct: 361 PAGKQVEISLVNGAKN----LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 192 ------------SSGAALLRD----VISDLEDVILICSG------------GKRQTNYHR 223
S LL + DL + + G
Sbjct: 417 SNRFLPVASPFHSH---LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG 473
Query: 224 LLLSDLVKGML--PARWCRYSVPRGCTVIQWVTDF 256
+ +V ++ P +W + T + DF
Sbjct: 474 SISERIVDCIIRLPVKWET-TTQFKAT---HILDF 504
Score = 41.2 bits (96), Expect = 0.003
Identities = 59/346 (17%), Positives = 99/346 (28%), Gaps = 140/346 (40%)
Query: 518 SQ--GGAKEL-KVYP----VWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCM 570
SQ G +L K VW A + G+S+ ++V++
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVW------NRA-----DNHFKDTYGFSILDIVIN------- 1667
Query: 571 EPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLNYNPPQISAFVLDINTQ 630
N + + G K G + R N + ++D + +I + ++
Sbjct: 1668 -----NPVNLTIHFGGEK--GKRIRENYSAMIFETIVDGKLKTEKIFKEI-----NEHST 1715
Query: 631 GIIQINVFGLKGIPSIQNLDDEFNFFLRGKEGILNVKPSTVEGLSGEQQEALQRLATKQS 690
R ++G+L+ T Q AL
Sbjct: 1716 SYT-----------------------FRSEKGLLSATQFT--------QPAL--TL---- 1738
Query: 691 TPEQCVPKLWEEEKSFSETAVAMYQLLFIQALRSDRVPAAAHIFVSAVFGE-------AF 743
A ++ L + L A H S GE A
Sbjct: 1739 ------------------MEKAAFEDLKSKGLIPADATFAGH---S--LGEYAALASLAD 1775
Query: 744 MLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVD-DLAAELGKQIASIAIGSAEG 802
++S E L +V + RG + +VP D GR + + A ++A A S E
Sbjct: 1776 VMSIE---SLVEVVFY--RGM--TMQVAVPR-DELGRSNYGMIAINPGRVA--ASFSQEA 1825
Query: 803 FNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQPHANF 848
V V R+G WLV++ N+
Sbjct: 1826 LQYV--VERVGKRTG-------------WLVEI----------VNY 1846
Score = 39.3 bits (91), Expect = 0.014
Identities = 39/206 (18%), Positives = 60/206 (29%), Gaps = 66/206 (32%)
Query: 3 RTN--LPPEK---I-----PWNALITLLSQSIYG-------GKIDNDFDQRLLGSFLSKL 45
+TN LP K I N +++ QS+YG K + DQ S++
Sbjct: 355 KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ-------SRI 407
Query: 46 -FTTR--SFEADFALVANV-------DGATRHINMPDGTRRDHFLHWIESLPDRQTPSWL 95
F+ R F F L A+ I D + + + + +
Sbjct: 408 PFSERKLKFSNRF-LPVASPFHSHLLVPASDLI-NKDLVKNN--VSF--------NAKDI 455
Query: 96 GLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFAYTEANENKTEERNVDGRPAWMRTLH 155
+P V T G+DL + L + V W T
Sbjct: 456 QIP-----VYDTFDGSDL-------RVLSGSISERIVDCI---IRLP-VK----WETTTQ 495
Query: 156 NSASTWLELLPKALQTLRRTVENIKD 181
A+ L+ P L KD
Sbjct: 496 FKATHILDFGPGGASGLGVLTHRNKD 521
Score = 35.0 bits (80), Expect = 0.22
Identities = 55/311 (17%), Positives = 101/311 (32%), Gaps = 117/311 (37%)
Query: 271 SQ--GGAKEL-KVYP----VWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCM 323
SQ G +L K VW A + G+S+ ++V++
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVW------NRA-----DNHFKDTYGFSILDIVIN------- 1667
Query: 324 EPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLMQQLEDEDE--FAYT-E 380
N + + G K G + R N + ++D + + ++ +E +YT
Sbjct: 1668 -----NPVNLTIHFGGEK--GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 381 ANE---NKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFERE 437
+ + + T+ +PA L A A + L+ + + P F
Sbjct: 1721 SEKGLLSATQ--FT--QPALT--LMEKA---------AFEDLKS--KGLI-PADATF--- 1759
Query: 438 VSSG------AAL--LRDVISDLEDVILICSGGKRQTNYHRLLLSDLVK--GMLPARWCR 487
+G AAL L DV+S +E ++ ++V GM
Sbjct: 1760 --AGHSLGEYAALASLADVMS-IESLV------------------EVVFYRGMTMQV--- 1795
Query: 488 YSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQ 547
+VPR L S G + + P + F+ EA + +
Sbjct: 1796 -AVPRD--------------------ELGRSNYGM--IAINPGRVAASFSQEA-LQYVVE 1831
Query: 548 CIAEANGWSLE 558
+ + GW +E
Sbjct: 1832 RVGKRTGWLVE 1842
Score = 30.0 bits (67), Expect = 8.0
Identities = 54/291 (18%), Positives = 90/291 (30%), Gaps = 90/291 (30%)
Query: 1224 SQ--GGAKEL-KVYP----VWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCM 1276
SQ G +L K VW A + G+S+ ++V++
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVW------NRA-----DNHFKDTYGFSILDIVIN------- 1667
Query: 1277 EPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESETRQDKLSL 1336
N + + G K G + R N + ++D + +
Sbjct: 1668 -----NPVNLTIHFGGEK--GKRIRENYSAMIFETIVD--------------GKLKTEKI 1706
Query: 1337 PVYLNSTRTELLFNVD---LNITSGQDP------HSFYQR---GGLFNPEAYITATRQCI 1384
+N T F + L+ T P + ++ GL +A A
Sbjct: 1707 FKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATF-A----- 1760
Query: 1385 AEANGWSLEE---LVLDVSITDCMEPEKINTDDCSFRVV---GLKLQGAQCRNNELVLTS 1438
G SL E L S+ D M E VV G+ +Q A R+
Sbjct: 1761 ----GHSLGEYAAL---ASLADVMSIE----S--LVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 1439 TILMDLPVTLVRWVKVESETRQDKLSLPVYLNSTRT-ELLFNVDLNITSGQ 1488
++ P +V + Q+ L V RT L+ V+ N+ + Q
Sbjct: 1808 GMIAINP------GRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQ 1852
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.0 bits (165), Expect = 2e-11
Identities = 97/734 (13%), Positives = 191/734 (26%), Gaps = 249/734 (33%)
Query: 28 KIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHI-NMPDGTRRDHFLHWIESL 86
++FD + + + + + HI D L W
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKEEID--------------HIIMSKDAVSGTLRLFWT--- 70
Query: 87 PDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFAYTE-ANENKTEERNVD 145
L ++ ++V K ++ + L +F + E +
Sbjct: 71 -------------------LLSKQEEMVQKFVE-EVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 146 GRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDL 205
L+N ++ K + + ++ L LR
Sbjct: 111 MYIEQRDRLYNDN----QVFAKYNVSRLQPYLKLRQALLE------------LRPA---- 150
Query: 206 EDVILICSGGKRQTNYHRLLLSDLVKGM-------LPARWCR-YSV----PRGCTVIQWV 253
++V++ G+ + C Y V I W+
Sbjct: 151 KNVLI-----------D---------GVLGSGKTWVALDVCLSYKVQCKMDFK---IFWL 187
Query: 254 T-----DFRLRIIQLQQVSLLVSQGGAKELKV---YPV-------WLGGLFNPEAYITAT 298
+ LQ++ + + L L + Y
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---- 243
Query: 299 RQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTI 358
C+ LVL + + N +F + C+ L+ T
Sbjct: 244 ENCL----------LVLL----NVQNAKAWN----AFNL--------SCKI--LLTTR-- 273
Query: 359 LMDLPVTLMQQLEDEDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKAL-- 416
VT + T ++D TL LL K L
Sbjct: 274 --FKQVT-------------DFLSAATTTHISLDHHS---MTLTPDEV--KSLLLKYLDC 313
Query: 417 --QTLRRTVENIKDPLYRYFEREVSSGAALLRDVIS-----------DLEDVILIC---- 459
Q L R V +P +S A +RD ++ L +I
Sbjct: 314 RPQDLPREVLTT-NPRR------LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 460 SGGKRQTNYHRL-LLSDLVKGMLPARWCRYSVPRGCTVIQW----VTDFRLRIIQLQQVS 514
+ + + RL + +P + W +D + + +L + S
Sbjct: 367 EPAEYRKMFDRLSVFPPSAH-----------IPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 515 LLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLD-VSITDCMEPE 573
L+ Q KE + + + Y+ + E +L ++D +I + +
Sbjct: 416 LVEKQP--KESTIS---IPSI-----YLELKVKLENEY---ALHRSIVDHYNIPKTFDSD 462
Query: 574 KI---NTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDL--------PVTLNYNPP-QIS 621
+ D + +G L+ + + L + +D + +N I
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIE-HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 622 AFVLDINT-QGIIQINVFGLKGIPSIQNLDDEFNFFLRGKEGILNVKPST---------- 670
+ + + I N P + L + FL E L T
Sbjct: 522 NTLQQLKFYKPYICDN------DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE 575
Query: 671 VEGLSGEQQEALQR 684
E + E + +QR
Sbjct: 576 DEAIFEEAHKQVQR 589
Score = 64.1 bits (155), Expect = 3e-10
Identities = 92/702 (13%), Positives = 185/702 (26%), Gaps = 245/702 (34%)
Query: 870 IFVFEPPPGIKANL--------LRT-FSTVPATRMMKAPNERARLYFLLAWFHAIVQERL 920
+ VFE N ++ S ++ + + + L W QE +
Sbjct: 22 LSVFEDA--FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF-WTLLSKQEEM 78
Query: 921 --RYVPLGWSKFYEFNESDLRVAC-----------DTLD-TWIDSTAMGRTNLPPEKIPW 966
++V Y+F S ++ + D + D+ + N+ + P+
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ-PY 137
Query: 967 NALITLLSQ-------SIYG----GKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANV- 1014
L L + I G GK T + +V
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGK------------------TW--------VALDVC 171
Query: 1015 DGATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQ 1074
M + W+ L NS E +L+M
Sbjct: 172 LSYKVQCKMDFK------IFWLN----------LKNCNSPET-------------VLEML 202
Query: 1075 QLEDEDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKD 1134
Q L ++ + +I+
Sbjct: 203 Q------------------------------KLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 1135 PLYRYFEREVSSGAAL-LRDVISDLEDV--------ILICSGGKRQTN------YHRLLL 1179
L R + + L L +V + + IL+ + K+ T+ + L
Sbjct: 233 ELRRLLKSKPYENCLLVLLNV-QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 1180 SDLVKGMLP-------ARW--CRYS-VPRGCTVIQWVTDFRLRIIQLQQVS-LLVSQGGA 1228
+ P ++ CR +PR ++ + +S
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPR----------------EVLTTNPRRLSIIAE 335
Query: 1229 KELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINT--DDC 1286
++ AT N L +++ S+ + +EP + D
Sbjct: 336 -SIRDGL--------------ATWDNWKHVNCDKLTT-IIESSL-NVLEPAEYRKMFDRL 378
Query: 1287 S-FRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESETRQDKLSLPVYLNSTRT 1345
S F + + + +L + W V +N
Sbjct: 379 SVF------------PPSAHI-PTILLSLI------WFDVIKSDVMV------VVNKLHK 413
Query: 1346 ELLFNVDLNITSGQDPHSFYQRGGLFNPEAYITATRQCIAEANGWSLEELVLD-VSITDC 1404
L + P + P Y+ + E +L ++D +I
Sbjct: 414 YSLVE--------KQPKEST----ISIPSIYLELKVKLENEY---ALHRSIVDHYNIPKT 458
Query: 1405 MEPEKI---NTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESETRQD 1461
+ + + D + +G L+ + + L + +D R+ +E + R D
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIE-HPERMTLFRMVFLDF-----RF--LEQKIRHD 510
Query: 1462 KLSL--PVYLNSTRTELLFNVDLNITSGQDPHSFYQRGVALL 1501
+ + +T +L F I DP Y+R V +
Sbjct: 511 STAWNASGSILNTLQQLKFYKPY-ICD-NDPK--YERLVNAI 548
Score = 58.7 bits (141), Expect = 2e-08
Identities = 85/645 (13%), Positives = 181/645 (28%), Gaps = 189/645 (29%)
Query: 346 QCRNNELVLTSTILMDLPVTLMQQLEDEDEFAYTEAN-ENKTEERNVDGRPAWMRTLHNS 404
Q ++ V + + + ++D + ++ ++ ++ L
Sbjct: 17 QYKDILSVFEDAFVDNFDC---KDVQDMPKSILSKEEIDHIIMSKDAVSG---TLRL--- 67
Query: 405 ASTWLELLPKALQTLRRTVENIKDPLYRYFE---REVSSGAALLRDVISDLEDVILICSG 461
W LL K + +++ VE + Y++ + +++ + + D + +
Sbjct: 68 --FWT-LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL--YND 122
Query: 462 GKRQTNYH----------RLLLSDL-------VKGM-------LPARWCR-YSV----PR 492
+ Y+ R L +L + G+ + C Y V
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 493 GCTVIQWVT-----DFRLRIIQLQQVSLLVSQGGAKELKV---YPV-------WLGGLFN 537
I W+ + LQ++ + + L L
Sbjct: 183 K---IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 538 PEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNN 597
+ Y C+ LVL + + N +F + C+
Sbjct: 240 SKPY----ENCL----------LVLL----NVQNAKAWN----AFNL--------SCKI- 268
Query: 598 ELVLT--STILMDLPVTLNYNPP--------------QISAFVLDINTQG----IIQINV 637
L+ T + L + + LD Q ++ N
Sbjct: 269 -LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 638 FGLKGIP-SIQNLDDEFNFFLR-GKEGILNVKPSTVEGLS-GEQQEALQRLA-----TKQ 689
L I SI++ ++ + + + + S++ L E ++ RL+
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH- 386
Query: 690 STPEQCVPKLWEEEKSFSETAVAMYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAER 749
P + +W + + + L +L ++ P + I + +++ E + E
Sbjct: 387 -IPTILLSLIWFDVI--KSDVMVVVNKLHKYSL-VEKQPKESTISIPSIYLE-LKVKLEN 441
Query: 750 ELDLPH--IVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQAD 807
E L H IV+H N+P S DDL D
Sbjct: 442 EYAL-HRSIVDHY---NIPKTFDS----------DDLIP-----------------PYLD 470
Query: 808 NVI--------NVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQPHANFRLFLTMEINPK 859
+ L + V L ++ LE+K+ R T
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF---LEQKI---------RHDSTAWNASG 518
Query: 860 VPVNLLR-----AGRIFVFEPPPGIKANLLRTFSTVPATRMMKAP 899
+N L+ I +P N + F ++ +
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
Score = 56.4 bits (135), Expect = 8e-08
Identities = 97/744 (13%), Positives = 199/744 (26%), Gaps = 280/744 (37%)
Query: 738 VFGEAFMLSAERELDLPHIVEHELRG-----NVPAVLCSVPGYDASGRVDDLAAELGKQI 792
VF +AF+ D + + + + ++ S + R+ +++
Sbjct: 24 VFEDAFV----DNFDCKDV-QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 793 ASIAIGSAEGFN------------------------QADNVINVAVRSGKWVLLKNVHLA 828
+ N Q D + N K+ NV
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY----NVS-R 133
Query: 829 PQWLVQLEKKLHSLQPHANFRLF---------LTMEINPKVPVNLLRAGRIF------VF 873
Q ++L + L L+P N + + +++ V +IF
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 874 EPPPGIK--ANLLRTFSTVPATRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFY 931
P ++ LL +R + N + R++ + Q LR L SK Y
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI--------QAELRR--LLKSKPY 243
Query: 932 EFNESDLRVACDTLDTWIDSTAMGRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLL 991
E N L+ L N + +
Sbjct: 244 E----------------------------------NCLLVL----------LNVQNAKAW 259
Query: 992 GSFLSK---LFTTRSFEADFALVANVDGATR-HINMPDGTRRDHFLHWIESLPDRQTPS- 1046
+F L TTR + + AT HI++ H +L + S
Sbjct: 260 NAFNLSCKILLTTR----FKQVTDFLSAATTTHISL---------DHHSMTLTPDEVKSL 306
Query: 1047 ---WLG-----LPNSAEKV--LLTTRGTDLVAKLLKMQQLEDEDEFAYTEANENKTEERN 1096
+L LP + ++A+ ++
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLS----IIAESIR------------------------ 338
Query: 1097 VDGRPAWMRTLHNSASTWLELLPKAL-QTLRRTVENIKDPLYR-YFEREVSSGAALLRDV 1154
DG W W + L + ++ ++ YR F+R ++
Sbjct: 339 -DGLATWDN--------WKHVNCDKLTTIIESSLNVLEPAEYRKMFDR-----LSVFP-- 382
Query: 1155 ISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQW----VTDFR 1210
+P + W +D
Sbjct: 383 ----PSA---------------------------------HIPTILLSLIWFDVIKSDVM 405
Query: 1211 LRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLD- 1269
+ + +L + SL+ Q KE + + + Y+ + E +L ++D
Sbjct: 406 VVVNKLHKYSLVEKQP--KESTIS---IPSI-----YLELKVKLENEY---ALHRSIVDH 452
Query: 1270 VSITDCMEPEKI---NTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVE 1326
+I + + + D + +G L+ + + L + +D R+ +E
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE-HPERMTLFRMVFLDF-----RF--LE 504
Query: 1327 SETRQDKLSL--PVYLNSTRTEL------------------------LFNVDLNITSGQD 1360
+ R D + + +T +L L ++ N+
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC--S 562
Query: 1361 PHSFYQRGGLFNPEA--YITATRQ 1382
++ R L + + A +Q
Sbjct: 563 KYTDLLRIALMAEDEAIFEEAHKQ 586
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.69
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 24/50 (48%)
Query: 688 KQSTPEQCVPKLWEEEKSFSETAVAMYQLLFIQALRSDRVPAAAHIFVSA 737
KQ+ + KL + ++ +Y D PA A + A
Sbjct: 19 KQA-----LKKL--------QASLKLYA--------DDSAPALA---IKA 44
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.8 bits (69), Expect = 2.7
Identities = 7/17 (41%), Positives = 9/17 (52%), Gaps = 1/17 (5%)
Query: 140 EERNVDGRPAWMRTLHN 156
++ VD R W RT N
Sbjct: 53 SDKLVDTRSEW-RTFSN 68
Score = 30.8 bits (69), Expect = 2.7
Identities = 7/17 (41%), Positives = 9/17 (52%), Gaps = 1/17 (5%)
Query: 387 EERNVDGRPAWMRTLHN 403
++ VD R W RT N
Sbjct: 53 SDKLVDTRSEW-RTFSN 68
Score = 30.8 bits (69), Expect = 2.7
Identities = 7/17 (41%), Positives = 9/17 (52%), Gaps = 1/17 (5%)
Query: 1093 EERNVDGRPAWMRTLHN 1109
++ VD R W RT N
Sbjct: 53 SDKLVDTRSEW-RTFSN 68
>2bw2_A Bypass of forespore C; sporulation, signaling protein, BOFC, sigmak
checkpoint; NMR {Bacillus subtilis}
Length = 140
Score = 29.7 bits (66), Expect = 3.8
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 868 GRIFVFEPPPGIKANLLRTFSTVPATRMMKAPNERARLY 906
G I F P + +++F + R+ + + L
Sbjct: 81 GVISTFHGRPEPASEPIQSFFQIDLERL--ESHMQKNLL 117
>3r2q_A Uncharacterized GST-like protein YIBF; transferase, glutathione;
HET: GSH; 1.05A {Escherichia coli}
Length = 202
Score = 29.2 bits (66), Expect = 9.0
Identities = 21/120 (17%), Positives = 37/120 (30%), Gaps = 33/120 (27%)
Query: 855 EINP--KVPVNLLRAGRIFVFEPPPGIKANLLRTFSTV---------PATRMM-KAPNER 902
+ NP KVPV L+ F+ S + A M+ + P E
Sbjct: 42 QFNPLGKVPV-LVTEEGECWFD-------------SPIIAEYIELMNVAPAMLPRDPLES 87
Query: 903 ARLYFLLAWFHAI-------VQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMG 955
R+ + A I V+E+ R + + D L+ ++ +
Sbjct: 88 LRVRKIEALADGIMDAGLVSVREQARPAAQQSEDELLRQREKINRSLDVLEGYLVDGTLK 147
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription
regulation, transcription repressor, drug binding,
transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB:
3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Length = 216
Score = 29.0 bits (65), Expect = 9.9
Identities = 9/86 (10%), Positives = 25/86 (29%), Gaps = 2/86 (2%)
Query: 671 VEGLSGEQQEALQRLATKQS--TPEQCVPKLWEEEKSFSETAVAMYQLLFIQALRSDRVP 728
+E + + A ++ Q + +++FS + + +
Sbjct: 106 IEIFNQPEAVAFGKIIYSQVYDKDRHLANWIENNQQNFSYNILMGFFKQQNNSYMKKNAE 165
Query: 729 AAAHIFVSAVFGEAFMLSAERELDLP 754
A +F + + L+ L
Sbjct: 166 KLAVLFCTMLKEPYHHLNVLINAPLK 191
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.408
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 23,229,093
Number of extensions: 1447551
Number of successful extensions: 2430
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2378
Number of HSP's successfully gapped: 37
Length of query: 1507
Length of database: 6,701,793
Length adjustment: 106
Effective length of query: 1401
Effective length of database: 3,742,167
Effective search space: 5242775967
Effective search space used: 5242775967
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.7 bits)