RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12182
         (1507 letters)



>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit
           {Rattus norvegicus [TaxId: 10116]}
          Length = 328

 Score = 31.7 bits (71), Expect = 0.59
 Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 3/99 (3%)

Query: 25  YGGKIDNDFDQRLLGSFLSK---LFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLH 81
           Y   +D      +L S + +    F           +A V G     +  D    +    
Sbjct: 207 YDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPR 266

Query: 82  WIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKM 120
           + + L       W    +S  + L++    D + KLL+ 
Sbjct: 267 FNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRY 305



 Score = 31.7 bits (71), Expect = 0.59
 Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 3/99 (3%)

Query: 978  YGGKIDNDFDQRLLGSFLSK---LFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLH 1034
            Y   +D      +L S + +    F           +A V G     +  D    +    
Sbjct: 207  YDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPR 266

Query: 1035 WIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKM 1073
            + + L       W    +S  + L++    D + KLL+ 
Sbjct: 267  FNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRY 305


>d1h6za1 c.1.12.2 (A:538-903) Pyruvate phosphate dikinase,
           C-terminal domain {Trypanosoma brucei [TaxId: 5691]}
          Length = 366

 Score = 30.9 bits (69), Expect = 1.3
 Identities = 11/91 (12%), Positives = 24/91 (26%)

Query: 360 MDLPVTLMQQLEDEDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTL 419
           M L  +   +    D+    +  +     R + G P  +R L      ++     A   L
Sbjct: 66  MILADSASGRKAALDKLLPIQRADFVGILRAMRGLPVTIRLLDPPLHEFVPHDAAAQFEL 125

Query: 420 RRTVENIKDPLYRYFEREVSSGAALLRDVIS 450
            + +    + +             L      
Sbjct: 126 AQKLGMPAEKVRNRVNALHELNPMLGHRGCR 156



 Score = 27.9 bits (61), Expect = 9.8
 Identities = 9/85 (10%), Positives = 21/85 (24%)

Query: 119 KMQQLEDEDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVEN 178
              +    D+    +  +     R + G P  +R L      ++     A   L + +  
Sbjct: 72  ASGRKAALDKLLPIQRADFVGILRAMRGLPVTIRLLDPPLHEFVPHDAAAQFELAQKLGM 131

Query: 179 IKDPLYRYFEREVSSGAALLRDVIS 203
             + +             L      
Sbjct: 132 PAEKVRNRVNALHELNPMLGHRGCR 156



 Score = 27.9 bits (61), Expect = 9.8
 Identities = 9/85 (10%), Positives = 21/85 (24%)

Query: 1072 KMQQLEDEDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVEN 1131
               +    D+    +  +     R + G P  +R L      ++     A   L + +  
Sbjct: 72   ASGRKAALDKLLPIQRADFVGILRAMRGLPVTIRLLDPPLHEFVPHDAAAQFELAQKLGM 131

Query: 1132 IKDPLYRYFEREVSSGAALLRDVIS 1156
              + +             L      
Sbjct: 132  PAEKVRNRVNALHELNPMLGHRGCR 156


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0478    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,612,820
Number of extensions: 268005
Number of successful extensions: 557
Number of sequences better than 10.0: 1
Number of HSP's gapped: 557
Number of HSP's successfully gapped: 9
Length of query: 1507
Length of database: 2,407,596
Length adjustment: 97
Effective length of query: 1410
Effective length of database: 1,075,786
Effective search space: 1516858260
Effective search space used: 1516858260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.1 bits)