BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12185
(317 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 127/277 (45%), Gaps = 29/277 (10%)
Query: 31 EQKLELFSSFQQRYKKSYSKSEHDI-RFKNFEKSLDIIEELNKNRQSPESARYGITEFSD 89
E+ ++LF+S+ + K Y + + RF+ F+ +L+ I+E NK S G+ EF+D
Sbjct: 16 ERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNS---YWLGLNEFAD 72
Query: 90 LSEEEFKTRHLRHSVNXXXXXXXXXXXXXXXXXXXXRSXXXXXXXXXXXXVKKDWREAGI 149
LS +EF +++ ++ + DWR+ G
Sbjct: 73 LSNDEFNEKYVGSLIDATIEQSYDEEFINEDIVNLPENV--------------DWRKKGA 118
Query: 150 IGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCSGGDFCAL 209
+ VR+Q +CG+CWAFS V T E ++ ++ G L LS QE++DC + GC GG
Sbjct: 119 VTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCE-RRSHGCKGGYPPYA 177
Query: 210 LDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIPSESSILTDIATH 269
L+++ N + L S+YP K C+ K G +K+ + P+ L +
Sbjct: 178 LEYVAKNGIHL--RSKYPYKAKQGTCRAKQVG--GPIVKTSGVGRVQPNNEGNLLNAIAK 233
Query: 270 GPVIAAVNA--LTWQYYLGGVIQYNC----DGSLANI 300
PV V + +Q Y GG+ + C DG++ +
Sbjct: 234 QPVSVVVESKGRPFQLYKGGIFEGPCGTKVDGAVTAV 270
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 125/285 (43%), Gaps = 25/285 (8%)
Query: 35 ELFSSFQQRYKKSY-SKSEHDIRFKNFEKSLDIIEELN-KNRQSPESARYGITEFSDLSE 92
E + +F+ Y +SY + E R + F+K L+ EE N K RQ S G+ F+D++
Sbjct: 20 EKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDMTP 79
Query: 93 EEFK--TRHLRHSVNXXXXXXXXXXXXXXXXXXXXRSXXXXXXXXXXXXVKKDWREAGII 150
EE K T L + R DWR+ G++
Sbjct: 80 EEMKAYTHGLIMPADLHKNGIPIKTREDLGLNASVR-----------YPASFDWRDQGMV 128
Query: 151 GKVRNQQTCGACWAFSTVETAESMHALKNGTL--SLLSVQEVIDCAGNGNMGCSGGDFCA 208
V+NQ +CG+ WAFS+ ES + NG S +S Q+++DC N +GCSGG
Sbjct: 129 SPVKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNA-LGCSGGWMND 187
Query: 209 LLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIPSESSILTD-IA 267
++ N + + E YP + D C PN V + L + ++L D +A
Sbjct: 188 AFTYVAQNGGI-DSEGAYPYEMADGNCHY---DPNQVAARLSGYVYLSGPDENMLADMVA 243
Query: 268 THGPVIAAVNA-LTWQYYLGGVIQYNCDGSLANINHAVQIVGYDN 311
T GPV A +A + Y GGV YN HAV IVGY N
Sbjct: 244 TKGPVAVAFDADDPFGSYSGGVY-YNPTCETNKFTHAVLIVGYGN 287
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 9/171 (5%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCA-GNGNMGC 201
DWR+ G + V+NQ+ CG+CWAFS E K G L LS Q ++DC+ GN GC
Sbjct: 6 DWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGC 65
Query: 202 SGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIPS-ES 260
+GG ++ N L+ E YP + D CK + P + + P E
Sbjct: 66 NGGFMARAFQYVKENG-GLDSEESYPYVAVDEICKYR---PENSVAQDTGFTVVAPGKEK 121
Query: 261 SILTDIATHGPVIAAVNA--LTWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
+++ +AT GP+ A++A ++Q+Y G I + D S N++H V +VGY
Sbjct: 122 ALMKAVATVGPISVAMDAGHSSFQFYKSG-IYFEPDCSSKNLDHGVLVVGY 171
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 84/170 (49%), Gaps = 12/170 (7%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
DWRE G + V+NQ CG+CWAFSTV T E ++ + G L LS QE++DC + GC
Sbjct: 6 DWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCE-RRSHGCD 64
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIPS--ES 260
GG L ++ N V E EYP K C+ K V I Y +P+ E
Sbjct: 65 GGYQTTSLQYVVDNGV--HTEREYPYEKKQGRCRAKDKKGPKVYITGY---KYVPANDEI 119
Query: 261 SILTDIATHG-PVIAAVNALTWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
S++ IA V+ +Q+Y GG+ + C N +HAV VGY
Sbjct: 120 SLIQAIANQPVSVVTDSRGRGFQFYKGGIYEGPCG---TNTDHAVTAVGY 166
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 13/175 (7%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGN--GNMG 200
DWRE G + +V+ Q +CGACWAFS V E+ LK G L LS Q ++DC+ GN G
Sbjct: 6 DWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEKYGNKG 65
Query: 201 CSGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCD--TLIP- 257
C+GG ++ NK + + ++ YP D C+ + K ++ TC T +P
Sbjct: 66 CNGGFMTTAFQYIIDNKGI-DSDASYPYKAMDQKCQYDS------KYRAATCSKYTELPY 118
Query: 258 -SESSILTDIATHGPVIAAVNALTWQYYLGGVIQYNCDGSLANINHAVQIVGYDN 311
E + +A GPV V+A ++L Y N+NH V +VGY +
Sbjct: 119 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD 173
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 133/300 (44%), Gaps = 50/300 (16%)
Query: 35 ELFSSFQQRYKKSYSKSEHDIRFK-NFEKSLDIIEELNKNRQSPE-SARYGITEFSDLSE 92
E +S F+ +KKSYS +IR + F+ ++ I E N + E + + +F D+S+
Sbjct: 25 EQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSK 84
Query: 93 EEF-------KTRHLRHSVNXXXXXXXXXXXXXXXXXXXXRSXXXXXXXXXXXXVKKDWR 145
EEF K + +H N R V DWR
Sbjct: 85 EEFLAYVNRGKAQKPKHPENL-------------------RMPYVSSKKPLAASV--DWR 123
Query: 146 EAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGN-GNMGCSGG 204
+ + +V++Q CG+ W+FST E AL+ G L+ LS Q +IDC+ + GN GC GG
Sbjct: 124 -SNAVSEVKDQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGG 182
Query: 205 DFCALLDWMD-----VNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIPSE 259
WMD ++ + ES YP + C+ S V S D E
Sbjct: 183 -------WMDSAFSYIHDYGIMSESAYPYEAQGDYCRFD--SSQSVTTLSGYYDLPSGDE 233
Query: 260 SSILTDIATHGPVIAAVNALT-WQYYLGGVIQYNCDGSLANINHAVQIVGY--DNYSRTW 316
+S+ + GPV A++A Q+Y GG+ Y+ + +++NH V +VGY DN W
Sbjct: 234 NSLADAVGQAGPVAVAIDATDELQFYSGGLF-YDQTCNQSDLNHGVLVVGYGSDNGQDYW 292
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 13/175 (7%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGN--GNMG 200
DWRE G + +V+ Q +CGACWAFS V E+ LK G L LS Q ++DC+ GN G
Sbjct: 9 DWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKG 68
Query: 201 CSGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCD--TLIP- 257
C+GG ++ NK + + ++ YP D C+ + K ++ TC T +P
Sbjct: 69 CNGGFMTTAFQYIIDNKGI-DSDASYPYKAMDQKCQYDS------KYRAATCSKYTELPY 121
Query: 258 -SESSILTDIATHGPVIAAVNALTWQYYLGGVIQYNCDGSLANINHAVQIVGYDN 311
E + +A GPV V+A ++L Y N+NH V +VGY +
Sbjct: 122 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD 176
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 13/175 (7%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGN--GNMG 200
DWRE G + +V+ Q +CGACWAFS V E+ LK G L LS Q ++DC+ GN G
Sbjct: 6 DWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKG 65
Query: 201 CSGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCD--TLIP- 257
C+GG ++ NK + + ++ YP D C+ + K ++ TC T +P
Sbjct: 66 CNGGFMTTAFQYIIDNKGI-DSDASYPYKAMDQKCQYDS------KYRAATCSKYTELPY 118
Query: 258 -SESSILTDIATHGPVIAAVNALTWQYYLGGVIQYNCDGSLANINHAVQIVGYDN 311
E + +A GPV V+A ++L Y N+NH V +VGY +
Sbjct: 119 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD 173
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 13/175 (7%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGN--GNMG 200
DWRE G + +V+ Q +CGACWAFS V E+ LK G L LS Q ++DC+ GN G
Sbjct: 7 DWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKG 66
Query: 201 CSGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCD--TLIP- 257
C+GG ++ NK + + ++ YP D C+ + K ++ TC T +P
Sbjct: 67 CNGGFMTTAFQYIIDNKGI-DSDASYPYKAMDQKCQYDS------KYRAATCSKYTELPY 119
Query: 258 -SESSILTDIATHGPVIAAVNALTWQYYLGGVIQYNCDGSLANINHAVQIVGYDN 311
E + +A GPV V+A ++L Y N+NH V +VGY +
Sbjct: 120 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD 174
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 13/175 (7%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGN--GNMG 200
DWRE G + +V+ Q +CGACWAFS V E+ LK G L LS Q ++DC+ GN G
Sbjct: 6 DWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKG 65
Query: 201 CSGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCD--TLIP- 257
C+GG ++ NK + + ++ YP D C+ + K ++ TC T +P
Sbjct: 66 CNGGFMTTAFQYIIDNKGI-DSDASYPYKAMDQKCQYDS------KYRAATCSKYTELPY 118
Query: 258 -SESSILTDIATHGPVIAAVNALTWQYYLGGVIQYNCDGSLANINHAVQIVGYDN 311
E + +A GPV V+A ++L Y N+NH V +VGY +
Sbjct: 119 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD 173
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 13/175 (7%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGN--GNMG 200
DWRE G + +V+ Q +CGACWAFS V E+ LK G L LS Q ++DC+ GN G
Sbjct: 7 DWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKG 66
Query: 201 CSGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCD--TLIP- 257
C+GG ++ NK + + ++ YP D C+ + K ++ TC T +P
Sbjct: 67 CNGGFMTTAFQYIIDNKGI-DSDASYPYKAMDQKCQYDS------KYRAATCSKYTELPY 119
Query: 258 -SESSILTDIATHGPVIAAVNALTWQYYLGGVIQYNCDGSLANINHAVQIVGYDN 311
E + +A GPV V+A ++L Y N+NH V +VGY +
Sbjct: 120 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD 174
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 13/175 (7%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGN--GNMG 200
DWRE G + +V+ Q +CGACWAFS V E+ LK G L LS Q ++DC+ GN G
Sbjct: 6 DWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKG 65
Query: 201 CSGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCD--TLIP- 257
C+GG ++ NK + + ++ YP D C+ + K ++ TC T +P
Sbjct: 66 CNGGFMTTAFQYIIDNKGI-DSDASYPYKAMDQKCQYDS------KYRAATCRKYTELPY 118
Query: 258 -SESSILTDIATHGPVIAAVNALTWQYYLGGVIQYNCDGSLANINHAVQIVGYDN 311
E + +A GPV V+A ++L Y N+NH V +VGY +
Sbjct: 119 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD 173
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 89/170 (52%), Gaps = 10/170 (5%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCA-GNGNMGC 201
DWR G + V++Q+ CG+CWAFST E H K G L LS QE++DC+ GN C
Sbjct: 12 DWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAEGNQSC 71
Query: 202 SGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIPSESS 261
SGG+ ++ ++ + E YP L +D C R + VKI + D SE++
Sbjct: 72 SGGEMNDAFQYV-LDSGGICSEDAYPYLARDEEC-RAQSCEKVVKILGFK-DVPRRSEAA 128
Query: 262 ILTDIATHGPVIAAVNA--LTWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
+ +A PV A+ A + +Q+Y GV +C +++H V +VGY
Sbjct: 129 MKAALAKS-PVSIAIEADQMPFQFYHEGVFDASCG---TDLDHGVLLVGY 174
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 86/175 (49%), Gaps = 13/175 (7%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGN--GNMG 200
DWRE G + +V+ Q +CGACWAFS V E+ LK G L LS Q ++DC+ GN G
Sbjct: 6 DWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKKYGNKG 65
Query: 201 CSGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCD--TLIP- 257
C+GG ++ NK + + ++ YP D C+ + ++ TC T +P
Sbjct: 66 CNGGFMTTAFQYIIDNKGI-DSDASYPYKAMDQKCQYDSA------YRAATCRKYTELPY 118
Query: 258 -SESSILTDIATHGPVIAAVNALTWQYYLGGVIQYNCDGSLANINHAVQIVGYDN 311
E + +A GPV V+A ++L Y N+NH V +VGY +
Sbjct: 119 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD 173
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 9/171 (5%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCA-GNGNMGC 201
DWR+ G + V+NQ+ CG+ WAFS E K G L LS Q ++DC+ GN GC
Sbjct: 6 DWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGC 65
Query: 202 SGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIPS-ES 260
+GG ++ N L+ E YP + D CK + P + + P E
Sbjct: 66 NGGFMARAFQYVKENG-GLDSEESYPYVAVDEICKYR---PENSVAQDTGFTVVAPGKEK 121
Query: 261 SILTDIATHGPVIAAVNA--LTWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
+++ +AT GP+ A++A ++Q+Y G I + D S N++H V +VGY
Sbjct: 122 ALMKAVATVGPISVAMDAGHSSFQFYKSG-IYFEPDCSSKNLDHGVLVVGY 171
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 86/175 (49%), Gaps = 13/175 (7%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGN--GNMG 200
DWRE G + +V+ Q +CGA WAFS V E+ LK G L LS Q ++DC+ GN G
Sbjct: 104 DWREKGCVTEVKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKG 163
Query: 201 CSGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCD--TLIP- 257
C+GG ++ NK + + ++ YP D C+ + K ++ TC T +P
Sbjct: 164 CNGGFMTTAFQYIIDNKGI-DSDASYPYKAMDQKCQYDS------KYRAATCSKYTELPY 216
Query: 258 -SESSILTDIATHGPVIAAVNALTWQYYLGGVIQYNCDGSLANINHAVQIVGYDN 311
E + +A GPV V+A ++L Y N+NH V +VGY +
Sbjct: 217 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD 271
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 92/171 (53%), Gaps = 16/171 (9%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
DWR+ G + V+NQ CG+CWAFSTV T ES++ ++ G L LS Q+++DC N GC
Sbjct: 6 DWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDC-NKKNHGCK 64
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP--SES 260
GG F ++ ++ ++ E+ YP C+ + V+I Y +P +E+
Sbjct: 65 GGAFVYAYQYI-IDNGGIDTEANYPYKAVQGPCR---AAKKVVRIDGY---KGVPHCNEN 117
Query: 261 SILTDIATHGPVIAAVNALT--WQYYLGGVIQYNCDGSLANINHAVQIVGY 309
++ +A+ P + A++A + +Q+Y G+ C L NH V IVGY
Sbjct: 118 ALKKAVASQ-PSVVAIDASSKQFQHYKSGIFSGPCGTKL---NHGVVIVGY 164
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 86/175 (49%), Gaps = 13/175 (7%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGN--GNMG 200
DWRE G + +V+ Q +CGA WAFS V E+ LK G L LS Q ++DC+ GN G
Sbjct: 7 DWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKG 66
Query: 201 CSGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCD--TLIP- 257
C+GG ++ NK + + ++ YP D C+ + K ++ TC T +P
Sbjct: 67 CNGGFMTTAFQYIIDNKGI-DSDASYPYKAMDQKCQYDS------KYRAATCSKYTELPY 119
Query: 258 -SESSILTDIATHGPVIAAVNALTWQYYLGGVIQYNCDGSLANINHAVQIVGYDN 311
E + +A GPV V+A ++L Y N+NH V +VGY +
Sbjct: 120 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD 174
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 86/175 (49%), Gaps = 13/175 (7%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGN--GNMG 200
DWRE G + +V+ Q +CGA WAFS V E+ LK G L LS Q ++DC+ GN G
Sbjct: 6 DWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKG 65
Query: 201 CSGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCD--TLIP- 257
C+GG ++ NK + + ++ YP D C+ + K ++ TC T +P
Sbjct: 66 CNGGFMTTAFQYIIDNKGI-DSDASYPYKAMDQKCQYDS------KYRAATCSKYTELPY 118
Query: 258 -SESSILTDIATHGPVIAAVNALTWQYYLGGVIQYNCDGSLANINHAVQIVGYDN 311
E + +A GPV V+A ++L Y N+NH V +VGY +
Sbjct: 119 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD 173
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 10/171 (5%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAG-NGNMGC 201
DWRE G + V+NQ CG+CWAFS E K G L LS Q ++DC+G GN GC
Sbjct: 6 DWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGC 65
Query: 202 SGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP-SES 260
+GG ++ N L+ E YP + +CK + + T IP E
Sbjct: 66 NGGLMDYAFQYVQDNG-GLDSEESYPYEATEESCKYNPK----YSVANDTGFVDIPKQEK 120
Query: 261 SILTDIATHGPVIAAVNA--LTWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
+++ +AT GP+ A++A ++ +Y G I + D S +++H V +VGY
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEG-IYFEPDCSSEDMDHGVLVVGY 170
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 86/175 (49%), Gaps = 13/175 (7%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGN--GNMG 200
DWRE G + +V+ Q +CGA WAFS V E+ LK G L LS Q ++DC+ GN G
Sbjct: 8 DWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKG 67
Query: 201 CSGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCD--TLIP- 257
C+GG ++ NK + + ++ YP D C+ + K ++ TC T +P
Sbjct: 68 CNGGFMTTAFQYIIDNKGI-DSDASYPYKAMDQKCQYDS------KYRAATCSKYTELPY 120
Query: 258 -SESSILTDIATHGPVIAAVNALTWQYYLGGVIQYNCDGSLANINHAVQIVGYDN 311
E + +A GPV V+A ++L Y N+NH V +VGY +
Sbjct: 121 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD 175
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 20/184 (10%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
DWR G + ++NQ CG+CWAFSTV T ES++ ++ G L LS Q+++DC+ N GC
Sbjct: 6 DWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCS-KKNHGCK 64
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIPSESSI 262
GG F ++ N + + E+ YP C+ + V+I C + +
Sbjct: 65 GGYFDRAYQYIIANGGI-DTEANYPYKAFQGPCR---AAKKVVRIDG--CKGVPQCNENA 118
Query: 263 LTDIATHGPVIAAVNALT--WQYYLGGVIQYNCDGSLANINHAVQIVGY--------DNY 312
L + P + A++A + +Q+Y GG+ C L NH V IVGY +++
Sbjct: 119 LKNAVASQPSVVAIDASSKQFQHYKGGIFTGPCGTKL---NHGVVIVGYGKDYWIVRNSW 175
Query: 313 SRTW 316
R W
Sbjct: 176 GRHW 179
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 122/283 (43%), Gaps = 29/283 (10%)
Query: 31 EQKLELFSSFQQRYKKSYSKSEHDI-RFKNFEKSLDIIEELNKNRQSPESARYGITEFSD 89
E+ ++LF S+ ++ K Y + I RF+ F+ +L I+E NK S G+ F+D
Sbjct: 60 ERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNS---YWLGLNVFAD 116
Query: 90 LSEEEFKTRHLRHSVNXXXXXXXXXXXXXXXXXXXXRSXXXXXXXXXXXXVKKDWREAGI 149
+S +EFK ++ DWR+ G
Sbjct: 117 MSNDEFKEKYTGSIAGNYTTTELSYEEVLNDGDVNIPEYV-------------DWRQKGA 163
Query: 150 IGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCSGGDFCAL 209
+ V+NQ +CG+ WAFS V T ES+ ++ G L+ S QE++DC + GC+GG +
Sbjct: 164 VTPVKNQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCD-RRSYGCNGGYPWSA 222
Query: 210 LDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP-SESSILTDIAT 268
L V + + + YP C+ + P K + P +E ++L IA
Sbjct: 223 LQL--VAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDG--VRQVQPYNEGALLYSIAN 278
Query: 269 HGPVIAAVNAL--TWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
PV + A +Q Y GG+ C ++HAV VGY
Sbjct: 279 Q-PVSVVLEAAGKDFQLYRGGIFVGPCGNK---VDHAVAAVGY 317
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 86/175 (49%), Gaps = 13/175 (7%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGN--GNMG 200
DWRE G + +V+ Q +CGA WAFS V E+ LK G L LS Q ++DC+ GN G
Sbjct: 6 DWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKG 65
Query: 201 CSGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCD--TLIP- 257
C+GG ++ NK + + ++ YP D C+ + K ++ TC T +P
Sbjct: 66 CNGGFMTTAFQYIIDNKGI-DSDASYPYKAMDLKCQYDS------KYRAATCSKYTELPY 118
Query: 258 -SESSILTDIATHGPVIAAVNALTWQYYLGGVIQYNCDGSLANINHAVQIVGYDN 311
E + +A GPV V+A ++L Y N+NH V +VGY +
Sbjct: 119 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD 173
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 89/171 (52%), Gaps = 11/171 (6%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
D+R+ G + V+NQ CG+CWAFS+V E K G L LS Q ++DC N GC
Sbjct: 6 DYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-NDGCG 64
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP--SES 260
GG ++ N+ + + E YP + +D +C T K + Y IP +E
Sbjct: 65 GGYMTNAFQYVQRNRGI-DSEDAYPYVGQDESCMYNPTG-KAAKCRGY---REIPEGNEK 119
Query: 261 SILTDIATHGPVIAAVNA--LTWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
++ +A GPV A++A ++Q+Y GV Y+ + S N+NHAV VGY
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVY-YDENCSSDNLNHAVLAVGY 169
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 10/171 (5%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAG-NGNMGC 201
DWRE G + V+NQ CG+CWAFS E K G L LS Q ++DC+G GN GC
Sbjct: 7 DWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGC 66
Query: 202 SGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP-SES 260
+GG ++ N L+ E YP + +CK + + T IP E
Sbjct: 67 NGGLMDYAFQYVQDNG-GLDSEESYPYEATEESCKYNPK----YSVANDTGFVDIPKQEK 121
Query: 261 SILTDIATHGPVIAAVNA--LTWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
+++ +AT GP+ A++A ++ +Y G I + D S +++H V +VGY
Sbjct: 122 ALMKAVATVGPISVAIDAGHESFLFYKEG-IYFEPDCSSEDMDHGVLVVGY 171
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 10/171 (5%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAG-NGNMGC 201
DWRE G + V+NQ CG+CWAFS E K G L LS Q ++DC+G GN GC
Sbjct: 6 DWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGC 65
Query: 202 SGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP-SES 260
+GG ++ N L+ E YP + +CK + + T IP E
Sbjct: 66 NGGLMDYAFQYVQDNG-GLDSEESYPYEATEESCKYNPK----YSVANDTGFVDIPKQEK 120
Query: 261 SILTDIATHGPVIAAVNA--LTWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
+++ +AT GP+ A++A ++ +Y G I + D S +++H V +VGY
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEG-IYFEPDCSSEDMDHGVLVVGY 170
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 87/177 (49%), Gaps = 26/177 (14%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
DWRE G + V+NQ CG+CWAFSTV E ++ + G L LS Q+++DC N GC
Sbjct: 8 DWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCT-TANHGCR 66
Query: 203 GGDFCALLDWMD------VNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLI 256
GG WM+ VN + E YP +D C +P V I SY +
Sbjct: 67 GG-------WMNPAFQFIVNNGGINSEETYPYRGQDGICNSTVNAPV-VSIDSY---ENV 115
Query: 257 PS--ESSILTDIATHGPVIAAVNAL--TWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
PS E S+ +A PV ++A +Q Y G+ +C+ S NHA+ +VGY
Sbjct: 116 PSHNEQSLQKAVANQ-PVSVTMDAAGRDFQLYRSGIFTGSCNISA---NHALTVVGY 168
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 12/168 (7%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
DWR+ G + VR+Q +CG+CWAFS V T E ++ ++ G L LS QE++DC + GC
Sbjct: 6 DWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCE-RRSHGCK 64
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP-SESS 261
GG L+++ N + L S+YP K C+ K G +K+ + P +E +
Sbjct: 65 GGYPPYALEYVAKNGIHL--RSKYPYKAKQGTCRAKQVG--GPIVKTSGVGRVQPNNEGN 120
Query: 262 ILTDIATHGPVIAAV--NALTWQYYLGGVIQYNCDGSLANINHAVQIV 307
+L IA PV V +Q Y GG+ + C ++HAV V
Sbjct: 121 LLNAIAKQ-PVSVVVESKGRPFQLYKGGIFEGPCG---TKVDHAVTAV 164
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 10/171 (5%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAG-NGNMGC 201
DWRE G + V+NQ CG+CWAFS E K G L LS Q ++DC+G GN GC
Sbjct: 44 DWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGC 103
Query: 202 SGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP-SES 260
+GG ++ N L+ E YP + +CK + + IP E
Sbjct: 104 NGGLMDYAFQYVQDNG-GLDSEESYPYEATEESCKYNPK----YSVANDAGFVDIPKQEK 158
Query: 261 SILTDIATHGPVIAAVNA--LTWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
+++ +AT GP+ A++A ++ +Y G I + D S +++H V +VGY
Sbjct: 159 ALMKAVATVGPISVAIDAGHESFLFYKEG-IYFEPDCSSEDMDHGVLVVGY 208
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 85/168 (50%), Gaps = 12/168 (7%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
DWR+ G + VR+Q +CG+CWAFS V T E ++ ++ G L LS QE++DC + GC
Sbjct: 6 DWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCE-RRSHGCK 64
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP-SESS 261
GG L+++ N + L S+YP K C+ K G +K+ + P +E +
Sbjct: 65 GGYPPYALEYVAKNGIHL--RSKYPYKAKQGTCRAKQVG--GPIVKTSGVGRVQPNNEGN 120
Query: 262 ILTDIATHGPVIAAV--NALTWQYYLGGVIQYNCDGSLANINHAVQIV 307
+L IA PV V +Q Y GG+ + C + HAV V
Sbjct: 121 LLNAIAKQ-PVSVVVESKGRPFQLYKGGIFEGPCG---TKVEHAVTAV 164
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 88/173 (50%), Gaps = 13/173 (7%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
DWR+ G + V+NQ +CG+CWAFSTV T ES++ ++ G L LS QE++DC N GC
Sbjct: 6 DWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCD-KKNHGCL 64
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIPSESSI 262
GG F ++ +N ++ ++ YP C+ + V I Y +E ++
Sbjct: 65 GGAFVFAYQYI-INNGGIDTQANYPYKAVQGPCQAASKV---VSIDGYN-GVPFCNEXAL 119
Query: 263 LTDIATHGPVIAAVNALTWQY--YLGGVIQYNCDGSLANINHAVQIVGYD-NY 312
+A P A++A + Q+ Y G+ C L NH V IVGY NY
Sbjct: 120 KQAVAVQ-PSTVAIDASSAQFQQYSSGIFSGPCGTKL---NHGVTIVGYQANY 168
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 85/172 (49%), Gaps = 11/172 (6%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
DWR+ G + V++Q CG+CWAFSTV + E ++A++ G+L LS QE+IDC N GC
Sbjct: 9 DWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTADNDGCQ 68
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAAC---KRKATSPNGVKIKSYTCDTLIPSE 259
GG +++ N ++ E+ YP C + SP V I + D SE
Sbjct: 69 GGLMDNAFEYIKNNGGLIT-EAAYPYRAARGTCNVARAAQNSPVVVHIDGHQ-DVPANSE 126
Query: 260 SSILTDIATHGPVIAAVNAL--TWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
+ +A PV AV A + +Y GV C L +H V +VGY
Sbjct: 127 EDLARAVANQ-PVSVAVEASGKAFMFYSEGVFTGECGTEL---DHGVAVVGY 174
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 119/277 (42%), Gaps = 26/277 (9%)
Query: 37 FSSFQQRYKKSYSKSEHDIRFKNFEKSLDIIEELNKN-RQSPESARYGITEFSDLSEEEF 95
++ ++ + + Y +E R +EK++ +IE N+ R+ S + F D++ EEF
Sbjct: 8 WTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEF 67
Query: 96 KTRHLRHSVNXXXXXXXXXXXXXXXXXXXXRSXXXXXXXXXXXXVKKDWREAGIIGKVRN 155
R +N + DWRE G + V+N
Sbjct: 68 -----RQVMNGLQNRKPR------------KGKVFQEPLFYEAPRSVDWREKGYVTPVKN 110
Query: 156 QQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAG-NGNMGCSGGDFCALLDWMD 214
Q CG+ WAFS E K G L LS Q ++DC+G GN GC+GG ++
Sbjct: 111 QGQCGSSWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYVQ 170
Query: 215 VNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIPSESSILTDIATHGPVIA 274
N L+ E YP + +CK +P + E +++ +AT GP+
Sbjct: 171 DNG-GLDSEESYPYEATEESCK---YNPKYSVANDAGFVDIPKQEKALMKAVATVGPISV 226
Query: 275 AVNA--LTWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
A++A ++ +Y G I + D S +++H V +VGY
Sbjct: 227 AIDAGHESFLFYKEG-IYFEPDCSSEDMDHGVLVVGY 262
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 119/277 (42%), Gaps = 26/277 (9%)
Query: 37 FSSFQQRYKKSYSKSEHDIRFKNFEKSLDIIEELNKN-RQSPESARYGITEFSDLSEEEF 95
++ ++ + + Y +E R +EK++ +IE N+ R+ S + F D++ EEF
Sbjct: 12 WTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEF 71
Query: 96 KTRHLRHSVNXXXXXXXXXXXXXXXXXXXXRSXXXXXXXXXXXXVKKDWREAGIIGKVRN 155
R +N + DWRE G + V+N
Sbjct: 72 -----RQVMNGFQNRKPR------------KGKVFQEPLFYEAPRSVDWREKGYVTPVKN 114
Query: 156 QQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAG-NGNMGCSGGDFCALLDWMD 214
Q CG+ WAFS E K G L LS Q ++DC+G GN GC+GG ++
Sbjct: 115 QGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQ 174
Query: 215 VNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIPSESSILTDIATHGPVIA 274
N L+ E YP + +CK +P + E +++ +AT GP+
Sbjct: 175 DNG-GLDSEESYPYEATEESCK---YNPKYSVANDAGFVDIPKQEKALMKAVATVGPISV 230
Query: 275 AVNA--LTWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
A++A ++ +Y G I + D S +++H V +VGY
Sbjct: 231 AIDAGHESFLFYKEG-IYFEPDCSSEDMDHGVLVVGY 266
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 10/171 (5%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAG-NGNMGC 201
DWRE G + V+NQ CG+CWAFS E K G L LS Q ++DC+G GN GC
Sbjct: 6 DWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGC 65
Query: 202 SGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP-SES 260
+GG ++ N L+ E YP + +CK + + IP E
Sbjct: 66 NGGLMDYAFQYVQDNG-GLDSEESYPYEATEESCKYNPK----YSVANDAGFVDIPKQEK 120
Query: 261 SILTDIATHGPVIAAVNA--LTWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
+++ +AT GP+ A++A ++ +Y G I + D S +++H V +VGY
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEG-IYFEPDCSSEDMDHGVLVVGY 170
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 88/171 (51%), Gaps = 11/171 (6%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
D+RE G + V+NQ CG+CWAFS+V E K G L LS Q ++DC N GC
Sbjct: 6 DYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-NDGCG 64
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP--SES 260
GG ++ N+ + + E YP + ++ +C T K + Y IP +E
Sbjct: 65 GGYMTNAFQYVQKNRGI-DSEDAYPYVGQEESCMYNPTG-KAAKCRGY---REIPEGNEK 119
Query: 261 SILTDIATHGPVIAAVNA--LTWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
++ +A GPV A++A ++Q+Y GV Y+ + N+NHAV VGY
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVY-YDESCNSDNLNHAVLAVGY 169
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 118/278 (42%), Gaps = 23/278 (8%)
Query: 35 ELFSSFQQRYKKSYSKSEHDIRFKNFEKSLDIIEELN-KNRQSPESARYGITEFSDLSEE 93
+L+ +++ Y K Y+ ++ R +EK++ I+E N ++ + G+ +F+D++ E
Sbjct: 3 DLWHQWKRMYNKEYNGADDQHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFE 62
Query: 94 EFKTRHLRHSVNXXXXXXXXXXXXXXXXXXXXRSXXXXXXXXXXXXVKKDWREAGIIGKV 153
EFK ++L K DWRE+G + +V
Sbjct: 63 EFKAKYLTEMSRASDILSHGVPYEANNRAVPD---------------KIDWRESGYVTEV 107
Query: 154 RNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGN-GNMGCSGGDFCALLDW 212
++Q CG+ WAFST T E + T S Q+++DC+ GN GC GG +
Sbjct: 108 KDQGNCGSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQY 167
Query: 213 MDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIPSESSILTDIATHGPV 272
+ + LE ES YP + C+ YT + SE + + GP
Sbjct: 168 L--KQFGLETESSYPYTAVEGQCRYNKQLGVAKVTGFYTVHS--GSEVELKNLVGAEGPA 223
Query: 273 IAAVNALT-WQYYLGGVIQYNCDGSLANINHAVQIVGY 309
AV+ + + Y G+ Q L +NHAV VGY
Sbjct: 224 AVAVDVESDFMMYRSGIYQSQTCSPL-RVNHAVLAVGY 260
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 87/171 (50%), Gaps = 12/171 (7%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
DWR+ G + V++Q CG+CWAFST+ E ++ +K L LS QE++DC + N GC+
Sbjct: 7 DWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQNQGCN 66
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP--SES 260
GG +++ + + E+ YP D C + V I + +P E+
Sbjct: 67 GGLMDYAFEFIK-QRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGH---ENVPENDEN 122
Query: 261 SILTDIATHGPVIAAVNA--LTWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
++L +A PV A++A +Q+Y GV +C L +H V IVGY
Sbjct: 123 ALLKAVANQ-PVSVAIDAGGSDFQFYSEGVFTGSCGTEL---DHGVAIVGY 169
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 10/171 (5%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAG-NGNMGC 201
DWRE G + V+NQ CG+ WAFS E K G L LS Q ++DC+G GN GC
Sbjct: 6 DWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGC 65
Query: 202 SGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP-SES 260
+GG ++ N L+ E YP + +CK + + T IP E
Sbjct: 66 NGGLMDYAFQYVQDNG-GLDSEESYPYEATEESCKYNPK----YSVANDTGFVDIPKQEK 120
Query: 261 SILTDIATHGPVIAAVNA--LTWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
+++ +AT GP+ A++A ++ +Y G I + D S +++H V +VGY
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEG-IYFEPDCSSEDMDHGVLVVGY 170
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 11/171 (6%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
D+R+ G + V+NQ CG+CWAFS+V E K G L LS Q ++DC N GC
Sbjct: 105 DYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-NDGCG 163
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP--SES 260
GG ++ N+ + + E YP + ++ +C T K + Y IP +E
Sbjct: 164 GGYMTNAFQYVQKNRGI-DSEDAYPYVGQEESCMYNPTG-KAAKCRGY---REIPEGNEK 218
Query: 261 SILTDIATHGPVIAAVNA--LTWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
++ +A GPV A++A ++Q+Y GV Y+ + N+NHAV VGY
Sbjct: 219 ALKRAVARVGPVSVAIDASLTSFQFYSKGVY-YDESCNSDNLNHAVLAVGY 268
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 10/171 (5%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAG-NGNMGC 201
DWRE G + V+NQ CG+ WAFS E K G L LS Q ++DC+G GN GC
Sbjct: 7 DWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGC 66
Query: 202 SGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP-SES 260
+GG ++ N L+ E YP + +CK + + T IP E
Sbjct: 67 NGGLMDYAFQYVQDNG-GLDSEESYPYEATEESCKYNPK----YSVANDTGFVDIPKQEK 121
Query: 261 SILTDIATHGPVIAAVNA--LTWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
+++ +AT GP+ A++A ++ +Y G I + D S +++H V +VGY
Sbjct: 122 ALMKAVATVGPISVAIDAGHESFLFYKEG-IYFEPDCSSEDMDHGVLVVGY 171
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 10/171 (5%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAG-NGNMGC 201
DWRE G + V+NQ CG+ WAFS E K G L LS Q ++DC+G GN GC
Sbjct: 6 DWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGC 65
Query: 202 SGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP-SES 260
+GG ++ N L+ E YP + +CK + + T IP E
Sbjct: 66 NGGLMDYAFQYVQDNG-GLDSEESYPYEATEESCKYNPK----YSVANDTGFVDIPKQEK 120
Query: 261 SILTDIATHGPVIAAVNA--LTWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
+++ +AT GP+ A++A ++ +Y G I + D S +++H V +VGY
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEG-IYFEPDCSSEDMDHGVLVVGY 170
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 11/171 (6%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
D+R+ G + V+NQ CG+CWAFS+V E K G L LS Q ++DC N GC
Sbjct: 4 DYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-NDGCG 62
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP--SES 260
GG ++ N+ + + E YP + ++ +C T K + Y IP +E
Sbjct: 63 GGYMTNAFQYVQKNRGI-DSEDAYPYVGQEESCMYNPTG-KAAKCRGY---REIPEGNEK 117
Query: 261 SILTDIATHGPVIAAVNA--LTWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
++ +A GPV A++A ++Q+Y GV Y+ + N+NHAV VGY
Sbjct: 118 ALKRAVARVGPVSVAIDASLTSFQFYSKGVY-YDESCNSDNLNHAVLAVGY 167
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 10/171 (5%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAG-NGNMGC 201
DWRE G + V+NQ CG+ WAFS E K G L LS Q ++DC+G GN GC
Sbjct: 6 DWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGC 65
Query: 202 SGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP-SES 260
+GG ++ N L+ E YP + +CK + + T IP E
Sbjct: 66 NGGLMDYAFQYVQDNG-GLDSEESYPYEATEESCKYNPK----YSVANDTGFVDIPKQEK 120
Query: 261 SILTDIATHGPVIAAVNA--LTWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
+++ +AT GP+ A++A ++ +Y G I + D S +++H V +VGY
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEG-IYFEPDCSSEDMDHGVLVVGY 170
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 11/171 (6%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
D+R+ G + V+NQ CG+CWAFS+V E K G L LS Q ++DC N GC
Sbjct: 8 DYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-NDGCG 66
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP--SES 260
GG ++ N+ + + E YP + ++ +C T K + Y IP +E
Sbjct: 67 GGYMTNAFQYVQKNRGI-DSEDAYPYVGQEESCMYNPTG-KAAKCRGY---REIPEGNEK 121
Query: 261 SILTDIATHGPVIAAVNA--LTWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
++ +A GPV A++A ++Q+Y GV Y+ + N+NHAV VGY
Sbjct: 122 ALKRAVARVGPVSVAIDASLTSFQFYSKGVY-YDESCNSDNLNHAVLAVGY 171
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 11/171 (6%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
D+R+ G + V+NQ CG+CWAFS+V E K G L LS Q ++DC N GC
Sbjct: 5 DYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-NDGCG 63
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP--SES 260
GG ++ N+ + + E YP + ++ +C T K + Y IP +E
Sbjct: 64 GGYMTNAFQYVQKNRGI-DSEDAYPYVGQEESCMYNPTG-KAAKCRGY---REIPEGNEK 118
Query: 261 SILTDIATHGPVIAAVNA--LTWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
++ +A GPV A++A ++Q+Y GV Y+ + N+NHAV VGY
Sbjct: 119 ALKRAVARVGPVSVAIDASLTSFQFYSKGVY-YDESCNSDNLNHAVLAVGY 168
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 11/171 (6%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
D+R+ G + V+NQ CG+CWAFS+V E K G L LS Q ++DC N GC
Sbjct: 6 DYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-NDGCG 64
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP--SES 260
GG ++ N+ + + E YP + ++ +C T K + Y IP +E
Sbjct: 65 GGYMTNAFQYVQKNRGI-DSEDAYPYVGQEESCMYNPTG-KAAKCRGY---REIPEGNEK 119
Query: 261 SILTDIATHGPVIAAVNA--LTWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
++ +A GPV A++A ++Q+Y GV Y+ + N+NHAV VGY
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVY-YDESCNSDNLNHAVLAVGY 169
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 80/172 (46%), Gaps = 8/172 (4%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
DW + G+I KV+ Q CG+ WAFS E+ HA+ G L LS QE+IDC + + GC
Sbjct: 7 DWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCV-DESEGCY 65
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTL-----IP 257
G +W+ V + E++YP +D CK + V I +Y L
Sbjct: 66 NGWHYQSFEWV-VKHGGIASEADYPYKARDGKCKANEIQ-DKVTIDNYGVQILSNESTES 123
Query: 258 SESSILTDIATHGPVIAAVNALTWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
S L P+ +++A + +Y GG+ S INH V IVGY
Sbjct: 124 EAESSLQSFVLEQPISVSIDAKDFHFYSGGIYDGGNCSSPYGINHFVLIVGY 175
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 88/171 (51%), Gaps = 11/171 (6%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
D+R+ G + V+NQ CG+CWAFS+V E G L L+ Q ++DC N GC
Sbjct: 6 DYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSE-NDGCG 64
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP--SES 260
GG ++ N+ + + E YP + +D +C T K + Y IP +E+
Sbjct: 65 GGYMTNAFQYVQRNRGI-DSEDAYPYVGQDESCMYNPTG-KAAKCRGY---REIPEGNEA 119
Query: 261 SILTDIATHGPVIAAVNA--LTWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
++ +A GPV A++A ++Q+Y GV Y+ + S +NHAV VGY
Sbjct: 120 ALKRAVAAVGPVSVAIDASLTSFQFYSAGVY-YDENCSSDALNHAVLAVGY 169
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 83/170 (48%), Gaps = 9/170 (5%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNM-GC 201
DWR AG + +++Q CG CWAFS + T E ++ + G L LS QE+IDC N GC
Sbjct: 6 DWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQNTRGC 65
Query: 202 SGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIPSESS 261
+GG ++ +N + E YP +D C + V I +Y + + +
Sbjct: 66 NGGYITDGFQFI-INNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTY--ENVPYNNEW 122
Query: 262 ILTDIATHGPVIAAVNAL--TWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
L T+ PV A++A ++ Y G+ C + I+HAV IVGY
Sbjct: 123 ALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTA---IDHAVTIVGY 169
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 10/171 (5%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAG-NGNMGC 201
DWRE G + V+NQ CG+ WAFS E K G L LS Q ++DC+G GN GC
Sbjct: 6 DWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGC 65
Query: 202 SGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP-SES 260
+GG ++ N L+ E YP + +CK + + IP E
Sbjct: 66 NGGLMDYAFQYVQDNG-GLDSEESYPYEATEESCKYNPK----YSVANDAGFVDIPKQEK 120
Query: 261 SILTDIATHGPVIAAVNA--LTWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
+++ +AT GP+ A++A ++ +Y G I + D S +++H V +VGY
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEG-IYFEPDCSSEDMDHGVLVVGY 170
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 9/170 (5%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNM-GC 201
DWR +G + +++Q CG+CWAFST+ E ++ + G L LS QE++DC N GC
Sbjct: 6 DWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQNTRGC 65
Query: 202 SGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIPSESS 261
GG ++ +N + E+ YP ++ C V I +Y + +E +
Sbjct: 66 DGGFMTDGFQFI-INNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYE-NVPYNNEWA 123
Query: 262 ILTDIATHGPVIAAVNALTW--QYYLGGVIQYNCDGSLANINHAVQIVGY 309
+ T +A PV A+ A + Q+Y G+ C + ++HAV IVGY
Sbjct: 124 LQTAVAYQ-PVSVALEAAGYNFQHYSSGIFTGPCGTA---VDHAVTIVGY 169
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 10/167 (5%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
DWR G + V++Q C +CWAFSTV T E ++ +K G L LS QE++DC + GC+
Sbjct: 6 DWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQ-SYGCN 64
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIPSESSI 262
G L ++ N + L ++YP + K C +A G K+K+ + +
Sbjct: 65 RGYQSTSLQYVAQNGIHL--RAKYPYIAKQQTC--RANQVGGPKVKTNGVGRVQSNNEGS 120
Query: 263 LTDIATHGPVIAAVNALT--WQYYLGGVIQYNCDGSLANINHAVQIV 307
L + H PV V + +Q Y GG+ + +C ++HAV V
Sbjct: 121 LLNAIAHQPVSVVVESAGRDFQNYKGGIFEGSCG---TKVDHAVTAV 164
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 81/170 (47%), Gaps = 12/170 (7%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
DWR G + V+NQ CG+ WAFST+ T E ++ + G L LS QE++DC + + GC
Sbjct: 6 DWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDKH-SYGCK 64
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIPS--ES 260
GG L ++ N V YP K C +AT G K+K T +PS E+
Sbjct: 65 GGYQTTSLQYVANNGV--HTSKVYPYQAKQYKC--RATDKPGPKVK-ITGYKRVPSNXET 119
Query: 261 SILTDIATHG-PVIAAVNALTWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
S L +A V+ +Q Y GV C ++HAV VGY
Sbjct: 120 SFLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCG---TKLDHAVTAVGY 166
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 90/173 (52%), Gaps = 14/173 (8%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAG-NGNMGC 201
DWRE G + V+NQ CGA +AFS E K G L LS Q ++DC+G GN GC
Sbjct: 6 DWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGC 65
Query: 202 SGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKR--KATSPNGVKIKSYTCDTLIP-S 258
+GG ++ N L+ E YP + +CK K + N V IP
Sbjct: 66 NGGLMDYAFQYVQDNG-GLDSEESYPYEATEESCKYNPKYSVANDVGFVD------IPKQ 118
Query: 259 ESSILTDIATHGPVIAAVNAL--TWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
E +++ +AT GP+ A++A ++ +Y G I ++ D S +++NHA+ +VGY
Sbjct: 119 EKALMKAVATVGPISVAIDAGHESFLFYKEG-IYFSSDCSSSSLNHAMLVVGY 170
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
DWR G + ++NQ+ CG+CWAFS V ES++ ++ G L LS QE++DC + GC+
Sbjct: 6 DWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCD-TASHGCN 64
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKR---KATSPNGVKIKSYTCDTLIPSE 259
GG ++ N + + + YP +CK + S NG + + +E
Sbjct: 65 GGWMNNAFQYIITNGGI-DTQQNYPYSAVQGSCKPYRLRVVSINGFQRVTRN------NE 117
Query: 260 SSILTDIATHGPVIAAVNA--LTWQYYLGGVIQYNCDGSLANINHAVQIVGYDNYS 313
S++ + +A+ PV V A +Q+Y G+ C + NH V IVGY S
Sbjct: 118 SALQSAVASQ-PVSVTVEAAGAPFQHYSSGIFTGPCGTAQ---NHGVVIVGYGTQS 169
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 7/171 (4%)
Query: 143 DWREAG-IIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGN-GNMG 200
DWR+ G + V+NQ +CG+CW FST ES A+ G + L+ Q+++DCA N N G
Sbjct: 6 DWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHG 65
Query: 201 CSGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIPSES 260
C GG +++ NK ++ E YP +D CK + + + + E
Sbjct: 66 CQGGLPSQAFEYIRYNKGIMG-EDTYPYKGQDDHCKFQPDK--AIAFVKDVANITMNDEE 122
Query: 261 SILTDIATHGPVIAAVNALT--WQYYLGGVIQYNCDGSLANINHAVQIVGY 309
+++ +A + PV A Y G +C + +NHAV VGY
Sbjct: 123 AMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGY 173
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 79/170 (46%), Gaps = 5/170 (2%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
DWR G + V++Q CG+CWAFS + E L L+ LS Q ++ C + GCS
Sbjct: 6 DWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-DSGCS 64
Query: 203 GGDFCALLDWM-DVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIPSESS 261
GG +W+ N + E YP + TS + V L E+
Sbjct: 65 GGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQ 124
Query: 262 ILTDIATHGPVIAAVNALTWQYYLGGVIQYNCDGSLANINHAVQIVGYDN 311
I +A +GPV AV+A +W Y GGV+ +L +H V +VGY++
Sbjct: 125 IAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEAL---DHGVLLVGYND 171
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 80/170 (47%), Gaps = 5/170 (2%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
DWR G + V++Q CG+CWAFS + E L L+ LS Q ++ C + GCS
Sbjct: 6 DWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-DSGCS 64
Query: 203 GGDFCALLDWM-DVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIPSESS 261
GG +W+ N + E YP + TS + V L E+
Sbjct: 65 GGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQ 124
Query: 262 ILTDIATHGPVIAAVNALTWQYYLGGVIQYNCDGSLANINHAVQIVGYDN 311
I +A +GPV AV+A +W Y GGV+ +C ++H V +VGY++
Sbjct: 125 IAAWLAVNGPVAVAVDASSWMTYTGGVMT-SCVSE--QLDHGVLLVGYND 171
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 85/170 (50%), Gaps = 9/170 (5%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNM-GC 201
DWR +G + +++Q CG+ WAFST+ E ++ + G L LS QE++DC N GC
Sbjct: 6 DWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQNTRGC 65
Query: 202 SGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIPSESS 261
GG ++ +N + E+ YP ++ C V I +Y + +E +
Sbjct: 66 DGGFMTDGFQFI-INNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYE-NVPYNNEWA 123
Query: 262 ILTDIATHGPVIAAVNALTW--QYYLGGVIQYNCDGSLANINHAVQIVGY 309
+ T +A + PV A+ A + Q+Y G+ C + ++HAV IVGY
Sbjct: 124 LQTAVA-YQPVSVALEAAGYNFQHYSSGIFTGPCGTA---VDHAVTIVGY 169
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 9/170 (5%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNM-GC 201
DWR AG + +++Q CG WAFS + T E ++ + +G+L LS QE+IDC N GC
Sbjct: 6 DWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQNTRGC 65
Query: 202 SGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIPSESS 261
GG ++ +N + E YP +D C V I +Y + + +
Sbjct: 66 DGGYITDGFQFI-INDGGINTEENYPYTAQDGDCDVALQDQKYVTIDTY--ENVPYNNEW 122
Query: 262 ILTDIATHGPVIAAVNAL--TWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
L T+ PV A++A ++ Y G+ C + ++HA+ IVGY
Sbjct: 123 ALQTAVTYQPVSVALDAAGDAFKQYASGIFTGPCGTA---VDHAIVIVGY 169
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 5/170 (2%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
DWR G + V++Q CG+CWAFS + E L L+ L+ Q ++ C + GCS
Sbjct: 6 DWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT-DSGCS 64
Query: 203 GGDFCALLDWM-DVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIPSESS 261
GG +W+ N + E YP + TS + V L E+
Sbjct: 65 GGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQ 124
Query: 262 ILTDIATHGPVIAAVNALTWQYYLGGVIQYNCDGSLANINHAVQIVGYDN 311
I +A +GPV AV+A +W Y GGV+ +C ++H V +VGY++
Sbjct: 125 IAAWLAVNGPVAVAVDASSWMTYTGGVMT-SCVSE--QLDHGVLLVGYND 171
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 5/170 (2%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
DWR G + V++Q CG+CWAFS + E L L+ L+ Q ++ C + GCS
Sbjct: 6 DWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT-DSGCS 64
Query: 203 GGDFCALLDWM-DVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIPSESS 261
GG +W+ N + E YP + TS + V L E+
Sbjct: 65 GGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQ 124
Query: 262 ILTDIATHGPVIAAVNALTWQYYLGGVIQYNCDGSLANINHAVQIVGYDN 311
I +A +GPV AV+A +W Y GGV+ +C ++H V +VGY++
Sbjct: 125 IAAWLAVNGPVAVAVDASSWMTYTGGVMT-SCVSE--QLDHGVLLVGYND 171
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 77/171 (45%), Gaps = 11/171 (6%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
DWR+ G + V++Q CG CWAF E + A+ G L +S Q+++DC
Sbjct: 6 DWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCD-TXXXXXX 64
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIPSESSI 262
GGD W+ N + ++ YP D C P +I Y T +P+ SS
Sbjct: 65 GGDADDAFRWVITNGGIAS-DANYPYTGVDGTCDLN--KPIAARIDGY---TNVPNSSSA 118
Query: 263 LTDIATHGPVIAAV--NALTWQYYLGGVI--QYNCDGSLANINHAVQIVGY 309
L D PV + ++ ++Q Y G I +C A ++H V IVGY
Sbjct: 119 LLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGY 169
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 89/175 (50%), Gaps = 9/175 (5%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
DWRE G + V++Q CG+CWAFST+ E + L LS Q ++ C + GC
Sbjct: 6 DWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCD-TIDFGCG 64
Query: 203 GGDFCALLDWM-DVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCD--TLIPSE 259
GG +W+ + N + E+ YP + + ++ NG +I + D L E
Sbjct: 65 GGLMDNAFNWIVNSNGGNVFTEASYPYVSGNG--EQPQCQMNGHEIGAAITDHVDLPQDE 122
Query: 260 SSILTDIATHGPVIAAVNALTWQYYLGGVIQYNCDGSLANINHAVQIVGYDNYSR 314
+I +A +GP+ AV+A ++ Y GG++ +C + ++H V +VGY++ S
Sbjct: 123 DAIAAYLAENGPLAIAVDATSFMDYNGGILT-SC--TSEQLDHGVLLVGYNDASN 174
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 84/172 (48%), Gaps = 12/172 (6%)
Query: 140 VKKDWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNM 199
+ DWR G + V++Q CG+CWAFS+V + ES +A++ L L S QE++DC+ N
Sbjct: 22 IAYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKNN- 80
Query: 200 GCSGGDFCALLDWMDVNKVVLEPESEYPLLLK-DAACKRKATSPNGVKIKSYTCDTLIPS 258
GC GG D M ++ L + +YP + C K + IKSY IP
Sbjct: 81 GCYGGYITNAFDDM-IDLGGLCSQDDYPYVSNLPETCNLKRCNER-YTIKSYVS---IP- 134
Query: 259 ESSILTDIATHGPV-IAAVNALTWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
+ + GP+ I+ + + +Y GG C A NHAV +VGY
Sbjct: 135 DDKFKEALRYLGPISISIAASDDFAFYRGGFYDGECG---AAPNHAVILVGY 183
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 12/170 (7%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
DWR+ G + V+NQ +CG+CWAFS V T E + ++ G L+ S QE++DC + GC+
Sbjct: 6 DWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCD-RRSYGCN 64
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP-SESS 261
GG + L V + + + YP C+ + P K + P +E +
Sbjct: 65 GGYPWSALQL--VAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDG--VRQVQPYNEGA 120
Query: 262 ILTDIATHGPVIAAVNALT--WQYYLGGVIQYNCDGSLANINHAVQIVGY 309
+L IA PV + A +Q Y GG+ C ++HAV VGY
Sbjct: 121 LLYSIANQ-PVSVVLEAAGKDFQLYRGGIFVGPCGNK---VDHAVAAVGY 166
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 12/170 (7%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
DWR+ G + V+NQ +CG+CWAFS V T E + ++ G L+ S QE++DC + GC+
Sbjct: 6 DWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCD-RRSYGCN 64
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP-SESS 261
GG + L V + + + YP C+ + P K + P ++ +
Sbjct: 65 GGYPWSALQL--VAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDG--VRQVQPYNQGA 120
Query: 262 ILTDIATHGPVIAAVNALT--WQYYLGGVIQYNCDGSLANINHAVQIVGY 309
+L IA PV + A +Q Y GG+ C ++HAV VGY
Sbjct: 121 LLYSIANQ-PVSVVLQAAGKDFQLYRGGIFVGPCGNK---VDHAVAAVGY 166
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 12/170 (7%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
DWR+ G + V+NQ +CG+CWAFS V T E + ++ G L+ S QE++DC + GC+
Sbjct: 6 DWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCD-RRSYGCN 64
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP-SESS 261
GG + L V + + + YP C+ + P K + P ++ +
Sbjct: 65 GGYPWSALQL--VAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDG--VRQVQPYNQGA 120
Query: 262 ILTDIATHGPVIAAVNALT--WQYYLGGVIQYNCDGSLANINHAVQIVGY 309
+L IA PV + A +Q Y GG+ C ++HAV VGY
Sbjct: 121 LLYSIANQ-PVSVVLQAAGKDFQLYRGGIFVGPCG---NKVDHAVAAVGY 166
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 82/172 (47%), Gaps = 14/172 (8%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMH-ALKNGTLSLLSVQEVIDCAGNGNMGC 201
D R + +R Q CG+CWAFS V ES + A +N +L LS QE++DCA GC
Sbjct: 16 DLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLD-LSEQELVDCA--SQHGC 72
Query: 202 SGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIPSESS 261
G ++++ N VV E YP + ++ C+R + G+ S C P
Sbjct: 73 HGDTIPRGIEYIQQNGVV--EERSYPYVAREQRCRRPNSQHYGI---SNYCQIYPPDVKQ 127
Query: 262 I---LTDIATHGPVIAAVNAL-TWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
I LT T VI + L +Q+Y G I + +G N HAV IVGY
Sbjct: 128 IREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQHDNGYQPNY-HAVNIVGY 178
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 18/172 (10%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
DWR + V++Q+ CG+CWAFS++ + ES +A++ L LS QE++DC+ N GC+
Sbjct: 23 DWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFK-NYGCN 81
Query: 203 GGDF-CALLDWMDVNKVVLEPESEYPLLLKDAA--CK-RKATSPNGVKIKSYTCDTLIPS 258
GG A D +++ + P+ +YP + DA C + T G+K + L
Sbjct: 82 GGLINNAFEDMIELGGIC--PDGDYP-YVSDAPNLCNIDRCTEKYGIK------NYLSVP 132
Query: 259 ESSILTDIATHGPV-IAAVNALTWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
++ + + GP+ I+ + + +Y G+ C L NHAV +VG+
Sbjct: 133 DNKLKEALRFLGPISISVAVSDDFAFYKEGIFDGECGDQL---NHAVMLVGF 181
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 119/284 (41%), Gaps = 35/284 (12%)
Query: 34 LELFSSFQQRYKKSYSKSE-HDIRFKNFEKSLDIIEELNKNRQSPESARYGITEFSDLSE 92
++ F +++ + KSY+ E + KNF +S+ + QS A I SDLS
Sbjct: 5 IKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYV-------QSNGGA---INHLSDLSL 54
Query: 93 EEFKTRHLRHSVNXXXXXXXXXXXXXXXXXXXXRSXXXXXXXXXXXXVKKDWREAGIIGK 152
+EFK R L + + D R+ +
Sbjct: 55 DEFKNRFL----------MSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQMRTVTP 104
Query: 153 VRNQQTCGACWAFSTVETAESMH-ALKNGTLSLLSVQEVIDCAGNGNMGCSGGDFCALLD 211
+R Q CG+ WAFS V ES + A ++ +L L+ QE++DCA GC G ++
Sbjct: 105 IRMQGGCGSAWAFSGVAATESAYLAYRDQSLD-LAEQELVDCA--SQHGCHGDTIPRGIE 161
Query: 212 WMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIPSESSILTDIATHGP 271
++ N VV ES Y + ++ +C+R G+ S C P+ + I +A
Sbjct: 162 YIQHNGVV--QESYYRYVAREQSCRRPNAQRFGI---SNYCQIYPPNANKIREALAQTHS 216
Query: 272 VIAAVNAL----TWQYYLGGVIQYNCDGSLANINHAVQIVGYDN 311
IA + + +++Y G I +G N HAV IVGY N
Sbjct: 217 AIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNY-HAVNIVGYSN 259
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 12/170 (7%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
DWR+ G + V+NQ +CG+ WAFS V T E + ++ G L+ S QE++DC + GC+
Sbjct: 6 DWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCD-RRSYGCN 64
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP-SESS 261
GG + L V + + + YP C+ + P K + P +E +
Sbjct: 65 GGYPWSALQL--VAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDG--VRQVQPYNEGA 120
Query: 262 ILTDIATHGPVIAAVNALT--WQYYLGGVIQYNCDGSLANINHAVQIVGY 309
+L IA PV + A +Q Y GG+ C ++HAV VGY
Sbjct: 121 LLYSIANQ-PVSVVLEAAGKDFQLYRGGIFVGPCGNK---VDHAVAAVGY 166
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 12/170 (7%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
DWR+ G + V+NQ +CG+ WAFS V T E + ++ G L+ S QE++DC + GC+
Sbjct: 6 DWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCD-RRSYGCN 64
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP-SESS 261
GG + L V + + + YP C+ + P K + P +E +
Sbjct: 65 GGYPWSALQL--VAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDG--VRQVQPYNEGA 120
Query: 262 ILTDIATHGPVIAAVNALT--WQYYLGGVIQYNCDGSLANINHAVQIVGY 309
+L IA PV + A +Q Y GG+ C ++HAV VGY
Sbjct: 121 LLYSIANQ-PVSVVLEAAGKDFQLYRGGIFVGPCGNK---VDHAVAAVGY 166
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 81/170 (47%), Gaps = 12/170 (7%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
DWR+ G + V+NQ +CG+ WAFS V T E + ++ G L+ S QE++DC + GC+
Sbjct: 6 DWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCD-RRSYGCN 64
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP-SESS 261
GG + L V + + + YP C+ + P K + P ++ +
Sbjct: 65 GGYPWSALQL--VAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDG--VRQVQPYNQGA 120
Query: 262 ILTDIATHGPVIAAVNALT--WQYYLGGVIQYNCDGSLANINHAVQIVGY 309
+L IA PV + A +Q Y GG+ C ++HAV VGY
Sbjct: 121 LLYSIANQ-PVSVVLQAAGKDFQLYRGGIFVGPCG---NKVDHAVAAVGY 166
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 83/174 (47%), Gaps = 14/174 (8%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMH-ALKNGTLSLLSVQEVIDCAGNGNMGC 201
D R+ + +R Q CG+CWAFS V ES + A +N +L L QE++DCA GC
Sbjct: 15 DLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAE-QELVDCA--SQHGC 71
Query: 202 SGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIPSESS 261
G ++++ N VV ES Y + ++ +C+R G+ S C P+ +
Sbjct: 72 HGDTIPRGIEYIQHNGVV--QESYYRYVAREQSCRRPNAQRFGI---SNYCQIYPPNVNK 126
Query: 262 ILTDIATHGPVIAAVNAL----TWQYYLGGVIQYNCDGSLANINHAVQIVGYDN 311
I +A IA + + +++Y G I +G N HAV IVGY N
Sbjct: 127 IREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNY-HAVNIVGYSN 179
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
DWR + V++Q+ CG+ WAFS++ + ES +A++ L LS QE++DC+ N GC+
Sbjct: 22 DWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFK-NYGCN 80
Query: 203 GGDF-CALLDWMDVNKVVLEPESEYPLLLKDAA--CK-RKATSPNGVKIKSYTCDTLIPS 258
GG A D +++ + P+ +YP + DA C + T G+K + L
Sbjct: 81 GGLINNAFEDMIELGGIC--PDGDYP-YVSDAPNLCNIDRCTEKYGIK------NYLSVP 131
Query: 259 ESSILTDIATHGPV-IAAVNALTWQYYLGGVIQYNCDGSLANINHAVQIVGY 309
++ + + GP+ I+ + + +Y G+ C L NHAV +VG+
Sbjct: 132 DNKLKEALRFLGPISISVAVSDDFAFYKEGIFDGECGDQL---NHAVMLVGF 180
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 14/174 (8%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMH-ALKNGTLSLLSVQEVIDCAGNGNMGC 201
D R+ + +R Q CG+CWAFS V ES + A + +L L QE++DCA GC
Sbjct: 15 DLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAE-QELVDCA--SQHGC 71
Query: 202 SGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIPSESS 261
G ++++ N VV ES Y + ++ +C+R G+ S C P+ +
Sbjct: 72 HGDTIPRGIEYIQHNGVV--QESYYRYVAREQSCRRPNAQRFGI---SNYCQIYPPNANK 126
Query: 262 ILTDIATHGPVIAAVNAL----TWQYYLGGVIQYNCDGSLANINHAVQIVGYDN 311
I +A IA + + +++Y G I +G N HAV IVGY N
Sbjct: 127 IREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNY-HAVNIVGYSN 179
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 85/173 (49%), Gaps = 14/173 (8%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
DWR+ G + VRNQ CG+CW FS+V E ++ + G L LS QE++DC + GC
Sbjct: 6 DWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCE-RRSYGCR 64
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP--SES 260
GG L ++ + + L YP C +A+ G K+K+ +P +E
Sbjct: 65 GGFPLYALQYVANSGIHL--RQYYPYEGVQRQC--RASQAKGPKVKTDGVGR-VPRNNEQ 119
Query: 261 SILTDIATHGPVIAAVNA--LTWQYYLGGVIQYNCDGSLANINHAVQIVGYDN 311
+++ IA PV V A +Q Y GG+ C S I+HAV VGY N
Sbjct: 120 ALIQRIAIQ-PVSIVVEAKGRAFQNYRGGIFAGPCGTS---IDHAVAAVGYGN 168
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 85/180 (47%), Gaps = 22/180 (12%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDCAGNGNMGCS 202
DWR G + KV++Q CG+CWAFS E L GTL LS QE++DC + C
Sbjct: 6 DWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCD-KMDKACM 64
Query: 203 GG----DFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDT--LI 256
GG + A+ N LE E +Y +C+ A K K Y D+ L
Sbjct: 65 GGLPSNAYSAI-----KNLGGLETEDDYSYQGHMQSCQFSAE-----KAKVYIQDSVELS 114
Query: 257 PSESSILTDIATHGPVIAAVNALTWQYYLGGV---IQYNCDGSLANINHAVQIVGYDNYS 313
+E + +A GP+ A+NA Q+Y G+ ++ C L I+HAV +VGY S
Sbjct: 115 QNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWL--IDHAVLLVGYGQRS 172
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 14/174 (8%)
Query: 143 DWREAGIIGKVRNQQTCGACWAFSTVETAESMH-ALKNGTLSLLSVQEVIDCAGNGNMGC 201
D R+ + +R Q CG+ WAFS V ES + A + +L L QE++DCA GC
Sbjct: 15 DLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAE-QELVDCA--SQHGC 71
Query: 202 SGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIPSESS 261
G ++++ N VV ES Y + ++ +C+R G+ S C P+ +
Sbjct: 72 HGDTIPRGIEYIQHNGVV--QESYYRYVAREQSCRRPNAQRFGI---SNYCQIYPPNANK 126
Query: 262 ILTDIATHGPVIAAVNAL----TWQYYLGGVIQYNCDGSLANINHAVQIVGYDN 311
I +A IA + + +++Y G I +G N HAV IVGY N
Sbjct: 127 IREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNY-HAVNIVGYSN 179
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 24/184 (13%)
Query: 143 DWREA---GIIGKVRNQQTCGACWAFSTVETAESMHAL--KNGTLSLLSVQEVIDCAGNG 197
DWR + VRNQ++CG+C++F+++ E+ + N +LS QEV+ C+
Sbjct: 211 DWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQEVVSCSPYA 270
Query: 198 NMGCSGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP 257
GC GG F L+ + E+ +P DA CK K ++ Y+ +
Sbjct: 271 Q-GCDGG-FPYLIAGKYAQDFGVVEENCFPYTATDAPCKPKENC-----LRYYSSEYYYV 323
Query: 258 -------SESSILTDIATHGPVIAAVNAL-TWQYYLGGVIQYNCDGSLAN----INHAVQ 305
+E+ + ++ HGP+ A + +Y G+ + N NHAV
Sbjct: 324 GGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAVL 383
Query: 306 IVGY 309
+VGY
Sbjct: 384 LVGY 387
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 14/179 (7%)
Query: 143 DWREA---GIIGKVRNQQTCGACWAFSTVETAESMHAL--KNGTLSLLSVQEVIDCAGNG 197
DWR + VRNQ +CG+C++F+++ E+ + N +LS QEV+ C+
Sbjct: 212 DWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYA 271
Query: 198 NMGCSGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKSYTCDTLIP 257
GC GG F L+ L E+ +P D+ CK K + +
Sbjct: 272 Q-GCEGG-FPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYG 329
Query: 258 --SESSILTDIATHGPVIAAVNAL-TWQYYLGGVIQYNCDGSLAN----INHAVQIVGY 309
+E+ + ++ HGP+ A + +Y G+ + N NHAV +VGY
Sbjct: 330 GCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGY 388
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 143 DWREA-GI--IGKVRNQQTCGACWAFSTVETAESMHAL--KNGTLSLLSVQEVIDCAGNG 197
DWR GI + VRNQ +CG+C++F+++ E+ + N +LS QEV+ C+
Sbjct: 6 DWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYA 65
Query: 198 NMGCSGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRK 238
GC GG F L+ L E+ +P D+ CK K
Sbjct: 66 Q-GCEGG-FPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMK 104
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 29/189 (15%)
Query: 143 DWREAGIIGK---VRNQ---QTCGACWAF-STVETAESMHALKNGTL--SLLSVQEVIDC 193
DWR + RNQ Q CG+CWA ST A+ ++ + G +LLSVQ VIDC
Sbjct: 41 DWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDC 100
Query: 194 AGNGNMG-CSGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKR--KATSPNGVK---- 246
GN G C GG+ ++ D+ + + E + Y KD C + + + N K
Sbjct: 101 ---GNAGSCEGGNDLSVWDYAHQHGIPDETCNNY--QAKDQECDKFNQCGTCNEFKECHA 155
Query: 247 IKSYTCDTL-----IPSESSILTDIATHGPVIAAVNAL-TWQYYLGGVIQYNCDGSLANI 300
I++YT + + ++ +I +GP+ + A Y GG+ D + I
Sbjct: 156 IRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTY--I 213
Query: 301 NHAVQIVGY 309
NH V + G+
Sbjct: 214 NHVVSVAGW 222
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 29/189 (15%)
Query: 143 DWREAGIIGK---VRNQ---QTCGACWAF-STVETAESMHALKNGTL--SLLSVQEVIDC 193
DWR + RNQ Q CG+CWA ST A+ ++ + G +LLSVQ VIDC
Sbjct: 6 DWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDC 65
Query: 194 AGNGNMG-CSGGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKR--KATSPNGVK---- 246
GN G C GG+ ++ D+ + + E + Y KD C + + + N K
Sbjct: 66 ---GNAGSCEGGNDLSVWDYAHQHGIPDETCNNYQ--AKDQECDKFNQCGTCNEFKECHA 120
Query: 247 IKSYTCDTL-----IPSESSILTDIATHGPVIAAVNAL-TWQYYLGGVIQYNCDGSLANI 300
I++YT + + ++ +I +GP+ + A Y GG+ D + I
Sbjct: 121 IRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTY--I 178
Query: 301 NHAVQIVGY 309
NH V + G+
Sbjct: 179 NHVVSVAGW 187
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 77/202 (38%), Gaps = 36/202 (17%)
Query: 141 KKDWREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLS--LLSVQEVIDCAGNGN 198
+K W I +R+Q CG+CWAF VE +++G LS +++ C +
Sbjct: 10 RKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLLSCCESCG 69
Query: 199 MGCSGGDFCALLDWMDVNKVVLEPESE-------YPLLLKDAACKRKATSPNGVKI---- 247
+GC GG D+ +V E YP + K K P G KI
Sbjct: 70 LGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGK-YPPCGSKIYKTP 128
Query: 248 -----------KSYTCD--------TLIPSESSILTDIATHGPVIAAVNALT-WQYYLGG 287
YT D + E +I +I +GPV A + Y G
Sbjct: 129 RCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYEDFLNYKSG 188
Query: 288 VIQYNCDGSLANINHAVQIVGY 309
+ ++ +L HA++I+G+
Sbjct: 189 IYKHITGETLG--GHAIRIIGW 208
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 85/202 (42%), Gaps = 34/202 (16%)
Query: 140 VKKDWREAGIIGKVRNQQTCGACWAFSTVET-AESMHALKNGTLSL-LSVQEVIDCAG-N 196
++ W I ++R+Q +CG+CWAF VE ++ + NG +++ +S ++++ C G
Sbjct: 13 AREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQ 72
Query: 197 GNMGCSGGDFCALLDWMDVNKVVLE--------------PESEYPLLLKDAACKRKATSP 242
GC+GG ++ +V P E+ + C + +P
Sbjct: 73 CGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCTGEGDTP 132
Query: 243 NGVKI--------------KSYTCDTLIPSESSILTDIATHGPVIAAVNALT-WQYYLGG 287
K+ YT ++ SE I+ +I +GPV A + + Y G
Sbjct: 133 KCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSG 192
Query: 288 VIQYNCDGSLANINHAVQIVGY 309
V ++ + HA++I+G+
Sbjct: 193 VYKHEAGDVMG--GHAIRILGW 212
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 85/202 (42%), Gaps = 34/202 (16%)
Query: 140 VKKDWREAGIIGKVRNQQTCGACWAFSTVET-AESMHALKNGTLSL-LSVQEVIDCAG-N 196
++ W I ++R+Q +CG+CWAF VE ++ + NG +++ +S ++++ C G
Sbjct: 7 AREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQ 66
Query: 197 GNMGCSGGDFCALLDWMDVNKVVLE--------------PESEYPLLLKDAACKRKATSP 242
GC+GG ++ +V P E+ + C + +P
Sbjct: 67 CGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCTGEGDTP 126
Query: 243 NGVKI--------------KSYTCDTLIPSESSILTDIATHGPVIAAVNALT-WQYYLGG 287
K+ YT ++ SE I+ +I +GPV A + + Y G
Sbjct: 127 KCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSG 186
Query: 288 VIQYNCDGSLANINHAVQIVGY 309
V ++ + HA++I+G+
Sbjct: 187 VYKHEAGDVMG--GHAIRILGW 206
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 87/202 (43%), Gaps = 34/202 (16%)
Query: 140 VKKDWREAGIIGKVRNQQTCGACWAFSTVET-AESMHALKNGTLSL-LSVQEVIDCAGN- 196
++ W + I ++R+Q +CG+CWAF VE ++ + N +S+ +S ++++ C G+
Sbjct: 70 AREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSM 129
Query: 197 GNMGCSGGDFCALLDWMDVNKVVLE--------------PESEYPLLLKDAACKRKATSP 242
GC+GG ++ +V P E+ + C + +P
Sbjct: 130 CGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTP 189
Query: 243 NGVKI--------------KSYTCDTLIPSESSILTDIATHGPVIAAVNALT-WQYYLGG 287
KI Y ++ SE I+ +I +GPV A + + + Y G
Sbjct: 190 KCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSG 249
Query: 288 VIQYNCDGSLANINHAVQIVGY 309
V Q+ G + HA++I+G+
Sbjct: 250 VYQH-VTGEMMG-GHAIRILGW 269
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 87/202 (43%), Gaps = 34/202 (16%)
Query: 140 VKKDWREAGIIGKVRNQQTCGACWAFSTVET-AESMHALKNGTLSL-LSVQEVIDCAGN- 196
++ W + I ++R+Q +CG+CWAF VE ++ + N +S+ +S ++++ C G+
Sbjct: 8 AREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSM 67
Query: 197 GNMGCSGGDFCALLDWMDVNKVVLE--------------PESEYPLLLKDAACKRKATSP 242
GC+GG ++ +V P E+ + C + +P
Sbjct: 68 CGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTP 127
Query: 243 NGVKI--------------KSYTCDTLIPSESSILTDIATHGPVIAAVNALT-WQYYLGG 287
KI Y ++ SE I+ +I +GPV A + + + Y G
Sbjct: 128 KCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSG 187
Query: 288 VIQYNCDGSLANINHAVQIVGY 309
V Q+ G + HA++I+G+
Sbjct: 188 VYQH-VTGEMMG-GHAIRILGW 207
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 87/202 (43%), Gaps = 34/202 (16%)
Query: 140 VKKDWREAGIIGKVRNQQTCGACWAFSTVET-AESMHALKNGTLSL-LSVQEVIDCAGN- 196
++ W + I ++R+Q +CG+CWAF VE ++ + N +S+ +S ++++ C G+
Sbjct: 9 AREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSM 68
Query: 197 GNMGCSGGDFCALLDWMDVNKVVLE--------------PESEYPLLLKDAACKRKATSP 242
GC+GG ++ +V P E+ + C + +P
Sbjct: 69 CGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTP 128
Query: 243 NGVKI--------------KSYTCDTLIPSESSILTDIATHGPVIAAVNALT-WQYYLGG 287
KI Y ++ SE I+ +I +GPV A + + + Y G
Sbjct: 129 KCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSG 188
Query: 288 VIQYNCDGSLANINHAVQIVGY 309
V Q+ G + HA++I+G+
Sbjct: 189 VYQH-VTGEMMG-GHAIRILGW 208
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 87/202 (43%), Gaps = 34/202 (16%)
Query: 140 VKKDWREAGIIGKVRNQQTCGACWAFSTVET-AESMHALKNGTLSL-LSVQEVIDCAGN- 196
++ W + I ++R+Q +CG+CWAF VE ++ + N +S+ +S ++++ C G+
Sbjct: 7 AREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSM 66
Query: 197 GNMGCSGGDFCALLDWMDVNKVVLE--------------PESEYPLLLKDAACKRKATSP 242
GC+GG ++ +V P E+ + C + +P
Sbjct: 67 CGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTP 126
Query: 243 NGVKI--------------KSYTCDTLIPSESSILTDIATHGPVIAAVNALT-WQYYLGG 287
KI Y ++ SE I+ +I +GPV A + + + Y G
Sbjct: 127 KCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSG 186
Query: 288 VIQYNCDGSLANINHAVQIVGY 309
V Q+ G + HA++I+G+
Sbjct: 187 VYQH-VTGEMMG-GHAIRILGW 206
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 84/202 (41%), Gaps = 34/202 (16%)
Query: 140 VKKDWREAGIIGKVRNQQTCGACWAFSTVET-AESMHALKNGTLSL-LSVQEVIDCAG-N 196
++ W I ++R+Q +CG+ WAF VE ++ + NG +++ +S ++++ C G
Sbjct: 69 AREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQ 128
Query: 197 GNMGCSGGDFCALLDWMDVNKVVLE--------------PESEYPLLLKDAACKRKATSP 242
GC+GG ++ +V P E+ + C + +P
Sbjct: 129 CGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCTGEGDTP 188
Query: 243 NGVKI--------------KSYTCDTLIPSESSILTDIATHGPVIAAVNALT-WQYYLGG 287
K+ YT ++ SE I+ +I +GPV A + + Y G
Sbjct: 189 KCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSG 248
Query: 288 VIQYNCDGSLANINHAVQIVGY 309
V ++ + HA++I+G+
Sbjct: 249 VYKHEAGDVMG--GHAIRILGW 268
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 51/152 (33%), Gaps = 31/152 (20%)
Query: 144 WREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSL-LSVQEVIDCAGNGNMGCS 202
W I ++ +Q CG+CWA + G + +S +++ C + GC+
Sbjct: 104 WPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGDGCN 163
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKS----------YTC 252
GGD + +V + YP C + S NG S YTC
Sbjct: 164 GGDPDRAWAYFSSTGLVSDYCQPYPF----PHCSHHSKSKNGYPPCSQFNFDTPKCNYTC 219
Query: 253 DTLIPSESSILTDIATHGPVIAAVNALTWQYY 284
D P I VN +W Y
Sbjct: 220 DD----------------PTIPVVNYRSWTSY 235
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 51/143 (35%), Gaps = 13/143 (9%)
Query: 144 WREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSL-LSVQEVIDCAGNGNMGCS 202
W I ++ +Q CG+CWA + G + +S +++ C + GC+
Sbjct: 82 WPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGDGCN 141
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKS-YTCDTLIPSESS 261
GGD + +V + YP C + S NG S + DT
Sbjct: 142 GGDPDRAWAYFSSTGLVSDYCQPYPF----PHCSHHSKSKNGYPPCSQFNFDT------- 190
Query: 262 ILTDIATHGPVIAAVNALTWQYY 284
D P I VN +W Y
Sbjct: 191 PKCDYTCDDPTIPVVNYRSWTSY 213
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 51/152 (33%), Gaps = 31/152 (20%)
Query: 144 WREAGIIGKVRNQQTCGACWAFSTVETAESMHALKNGTLSL-LSVQEVIDCAGNGNMGCS 202
W I ++ +Q CG+CWA + G + +S +++ C + GC+
Sbjct: 81 WPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGDGCN 140
Query: 203 GGDFCALLDWMDVNKVVLEPESEYPLLLKDAACKRKATSPNGVKIKS----------YTC 252
GGD + +V + YP C + S NG S YTC
Sbjct: 141 GGDPDRAWAYFSSTGLVSDYCQPYPF----PHCSHHSKSKNGYPPCSQFNFDTPKCNYTC 196
Query: 253 DTLIPSESSILTDIATHGPVIAAVNALTWQYY 284
D P I VN +W Y
Sbjct: 197 DD----------------PTIPVVNYRSWTSY 212
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 85/202 (42%), Gaps = 34/202 (16%)
Query: 140 VKKDWREAGIIGKVRNQQTCGACWAFSTVET-AESMHALKNGTLSL-LSVQEVIDCAGN- 196
++ W + I ++R+Q +CG+ WAF VE ++ + N +S+ +S ++++ C G+
Sbjct: 13 AREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSM 72
Query: 197 GNMGCSGGDFCALLDWMDVNKVVLE--------------PESEYPLLLKDAACKRKATSP 242
GC+GG ++ +V P E + C + +P
Sbjct: 73 CGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPCTGEGDTP 132
Query: 243 NGVKI--------------KSYTCDTLIPSESSILTDIATHGPVIAAVNALT-WQYYLGG 287
KI Y ++ SE I+ +I +GPV A + + + Y G
Sbjct: 133 KCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSG 192
Query: 288 VIQYNCDGSLANINHAVQIVGY 309
V Q+ G + HA++I+G+
Sbjct: 193 VYQH-VTGEMMG-GHAIRILGW 212
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 74/192 (38%), Gaps = 36/192 (18%)
Query: 152 KVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDC-AGNGNMGCSGGDFCALL 210
+V +Q C W F++ E++ +K + +S V +C G C G + +
Sbjct: 23 QVEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGS--SPM 80
Query: 211 DWMDV--NKVVLEPESEYPL------------------LLKDAACKRKATSPNGVKIKSY 250
+++ + + L ES YP L + PN + K Y
Sbjct: 81 EFLQIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGY 140
Query: 251 TC-------DTLIPSESSILTDIATHGPVIA---AVNALTWQYYLGGVIQYNCDGSLANI 300
T D + I T++ G VIA A N + +++ G +Q C A+
Sbjct: 141 TAYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEF-SGKKVQNLCGDDTAD- 198
Query: 301 NHAVQIVGYDNY 312
HAV IVGY NY
Sbjct: 199 -HAVNIVGYGNY 209
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 37.0 bits (84), Expect = 0.016, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 141 KKDWREAGIIGKVRNQQTCGACWAFSTVE 169
++ W + I ++R+Q +CG+CWAF VE
Sbjct: 8 REQWPQCPTIKEIRDQGSCGSCWAFGAVE 36
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 74/192 (38%), Gaps = 36/192 (18%)
Query: 152 KVRNQQTCGACWAFSTVETAESMHALKNGTLSLLSVQEVIDC-AGNGNMGCSGGDFCALL 210
+V +Q C W F++ E++ +K + +S V +C G C G + +
Sbjct: 24 QVEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGS--SPM 81
Query: 211 DWMDV--NKVVLEPESEYPL------------------LLKDAACKRKATSPNGVKIKSY 250
+++ + + L ES YP L + PN + K Y
Sbjct: 82 EFLQIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGY 141
Query: 251 TC-------DTLIPSESSILTDIATHGPVIA---AVNALTWQYYLGGVIQYNCDGSLANI 300
T D + I T++ G VIA A N + +++ G ++ C A+
Sbjct: 142 TAYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEF-SGKKVKNLCGDDTAD- 199
Query: 301 NHAVQIVGYDNY 312
HAV IVGY NY
Sbjct: 200 -HAVNIVGYGNY 210
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 35.8 bits (81), Expect = 0.031, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 141 KKDWREAGIIGKVRNQQTCGACWAFSTVE 169
++ W I ++R+Q +CG+CWAF VE
Sbjct: 8 REQWPNCPTIKEIRDQGSCGSCWAFGAVE 36
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 140 VKKDWREAGIIGKVRNQQTCGACWAFSTVET 170
++ W I ++R+Q +CG+CWAF VE
Sbjct: 7 AREQWPNCPTIKEIRDQGSCGSCWAFGAVEA 37
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 140 VKKDWREAGIIGKVRNQQTCGACWAFSTVET 170
++ W I ++R+Q +CG+CWAF VE
Sbjct: 7 AREQWPNCPTIKEIRDQGSCGSCWAFGAVEA 37
>pdb|2L95|A Chain A, Solution Structure Of Cytotoxic T-Lymphocyte
Antigent-2(Ctla Protein), Crammer At Ph 6.0
Length = 80
Score = 33.9 bits (76), Expect = 0.11, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 35 ELFSSFQQRYKKSYSKSEHDIRFKNFEKSLDIIEELNKNRQSPE-SARYGITEFSDLSEE 93
E + ++ ++ K+Y E +R + + +S IEE N+ + E + + GI +DL+ E
Sbjct: 8 EEWVEYKSKFDKNYEAEEDLMRRRIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTPE 67
Query: 94 EFKTR 98
EF R
Sbjct: 68 EFAQR 72
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 106
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 37 FSSFQQRYKKSY-SKSEHDIRFKNFEKSLDIIEELNKNRQSPESARYGITEFSDLSEEEF 95
FSSFQ Y KSY ++ E R+ F+ +L I N Q S + F DLS +EF
Sbjct: 25 FSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHN---QQGYSYSLKMNHFGDLSRDEF 81
Query: 96 KTRHL 100
+ ++L
Sbjct: 82 RRKYL 86
>pdb|1CRU|A Chain A, Soluble Quinoprotein Glucose Dehydrogenase From
Acinetobacter Calcoaceticus In Complex With Pqq And
Methylhydrazine
pdb|1CRU|B Chain B, Soluble Quinoprotein Glucose Dehydrogenase From
Acinetobacter Calcoaceticus In Complex With Pqq And
Methylhydrazine
pdb|1QBI|A Chain A, Soluble Quinoprotein Glucose Dehydrogenase From
Acinetobacter Calcoaceticus
pdb|1QBI|B Chain B, Soluble Quinoprotein Glucose Dehydrogenase From
Acinetobacter Calcoaceticus
pdb|1C9U|A Chain A, Crystal Structure Of The Soluble Quinoprotein Glucose
Dehydrogenase In Complex With Pqq
pdb|1C9U|B Chain B, Crystal Structure Of The Soluble Quinoprotein Glucose
Dehydrogenase In Complex With Pqq
pdb|1CQ1|A Chain A, Soluble Quinoprotein Glucose Dehydrogenase From
Acinetobacter Calcoaceticus In Complex With Pqqh2 And
Glucose
pdb|1CQ1|B Chain B, Soluble Quinoprotein Glucose Dehydrogenase From
Acinetobacter Calcoaceticus In Complex With Pqqh2 And
Glucose
Length = 454
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 262 ILTDIATHGPVIAAVNALTWQYYLGGVIQYNCDGSLANINHAVQIV 307
L + A H P +N + Y+G V++ N DGS+ N + V
Sbjct: 173 FLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGV 218
>pdb|3K6S|A Chain A, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|C Chain C, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|E Chain E, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|G Chain G, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K71|A Chain A, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|C Chain C, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|E Chain E, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|G Chain G, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K72|A Chain A, Structure Of Integrin Alphax Beta2
pdb|3K72|C Chain C, Structure Of Integrin Alphax Beta2
Length = 1095
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 212 WMDVNKVVLEPESEYPLLLKD--------AACKRKATSPNGVKIKSYTCDTLIPSESSIL 263
W ++N + +P E+ ++D K K + G + S + L ++
Sbjct: 279 WKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFAIEGTETTSSSSFELEMAQEGFS 338
Query: 264 TDIATHGPVIAAVNALTWQYYLGGVIQYNCDGSLANIN 301
GPV+ AV + TW GG Y + S IN
Sbjct: 339 AVFTPDGPVLGAVGSFTWS---GGAFLYPPNMSPTFIN 373
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,267,146
Number of Sequences: 62578
Number of extensions: 297417
Number of successful extensions: 982
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 792
Number of HSP's gapped (non-prelim): 118
length of query: 317
length of database: 14,973,337
effective HSP length: 99
effective length of query: 218
effective length of database: 8,778,115
effective search space: 1913629070
effective search space used: 1913629070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)