Query psy12187
Match_columns 112
No_of_seqs 104 out of 566
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 20:55:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12187.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12187hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03015 Sterile: Male sterili 100.0 1.5E-32 3.3E-37 181.0 8.3 86 10-95 9-94 (94)
2 cd09071 FAR_C C-terminal domai 100.0 1.3E-29 2.8E-34 165.6 7.7 84 10-93 9-92 (92)
3 KOG1221|consensus 99.9 2.6E-27 5.6E-32 193.1 8.7 98 10-107 368-467 (467)
4 PLN02996 fatty acyl-CoA reduct 99.9 7.1E-22 1.5E-26 162.0 8.4 84 11-94 399-491 (491)
5 PLN02503 fatty acyl-CoA reduct 99.9 1.3E-21 2.8E-26 164.3 7.8 86 11-96 505-604 (605)
6 PTZ00374 dihydroxyacetone phos 93.4 0.049 1.1E-06 49.2 2.1 89 9-98 377-485 (1108)
7 PF07757 AdoMet_MTase: Predict 56.5 7.5 0.00016 26.6 1.5 27 2-28 63-89 (112)
8 PF07197 DUF1409: Protein of u 55.5 2.3 4.9E-05 25.2 -1.0 10 1-10 11-20 (51)
9 COG5012 Predicted cobalamin bi 51.7 6.3 0.00014 30.1 0.6 27 1-27 135-161 (227)
10 PF00281 Ribosomal_L5: Ribosom 50.1 6 0.00013 23.5 0.2 23 2-24 13-43 (56)
11 PF13679 Methyltransf_32: Meth 45.1 9.1 0.0002 26.2 0.5 17 1-17 29-45 (141)
12 KOG2762|consensus 40.8 15 0.00033 30.2 1.3 24 69-92 47-73 (429)
13 PF05208 ALG3: ALG3 protein; 40.3 15 0.00032 30.0 1.2 27 69-95 19-48 (368)
14 COG4106 Tam Trans-aconitate me 40.3 16 0.00034 28.3 1.2 16 1-16 34-49 (257)
15 PF07377 DUF1493: Protein of u 40.2 13 0.00028 24.7 0.7 16 66-81 53-68 (111)
16 COG3945 Uncharacterized conser 34.4 48 0.001 24.7 2.9 32 74-105 115-148 (189)
17 PF08149 BING4CT: BING4CT (NUC 33.1 25 0.00053 22.7 1.1 32 4-39 38-72 (80)
18 KOG3414|consensus 30.2 14 0.0003 26.1 -0.4 34 1-36 91-124 (142)
19 PF04244 DPRP: Deoxyribodipyri 29.0 58 0.0013 24.5 2.7 55 13-68 135-195 (224)
20 PF11084 DUF2621: Protein of u 26.7 82 0.0018 22.3 2.9 34 34-83 20-53 (141)
21 COG4479 Uncharacterized protei 25.9 28 0.0006 22.0 0.4 32 50-83 38-71 (74)
22 PF06889 DUF1266: Protein of u 25.8 55 0.0012 22.4 2.0 23 76-98 123-145 (172)
23 PF13489 Methyltransf_23: Meth 25.5 41 0.00089 22.3 1.2 20 1-20 26-45 (161)
24 PF13847 Methyltransf_31: Meth 24.5 21 0.00045 24.2 -0.4 49 1-55 7-65 (152)
25 COG0381 WecB UDP-N-acetylgluco 24.1 1.3E+02 0.0029 24.7 4.1 85 13-98 5-94 (383)
26 PF12847 Methyltransf_18: Meth 22.9 25 0.00053 22.1 -0.3 32 1-32 5-45 (112)
27 PRK14011 prefoldin subunit alp 22.2 77 0.0017 22.4 2.1 33 1-33 73-109 (144)
28 COG2184 Fic Protein involved i 22.1 3.5E+02 0.0075 20.3 6.1 70 23-98 114-183 (201)
29 PF03195 DUF260: Protein of un 22.0 45 0.00097 22.2 0.9 32 47-81 36-67 (101)
30 PF08242 Methyltransf_12: Meth 22.0 33 0.00072 21.2 0.2 13 4-16 5-17 (99)
31 PF13649 Methyltransf_25: Meth 21.8 30 0.00065 21.7 -0.0 14 1-14 1-14 (101)
32 PF02966 DIM1: Mitosis protein 21.6 29 0.00062 24.5 -0.1 36 1-38 88-123 (133)
33 PF06325 PrmA: Ribosomal prote 21.6 51 0.0011 25.9 1.2 22 1-22 165-186 (295)
No 1
>PF03015 Sterile: Male sterility protein; InterPro: IPR004262 This family represents the C-terminal region of the male sterility protein in a number of organisms. The Arabidopsis thaliana male sterility 2 (MS2) protein is involved in male gametogenesis. The MS2 protein shows sequence similarity to a jojoba protein (also a member of this group) that converts wax fatty acids to fatty alcohols. It has been suggested that a possible function of the MS2 protein may be as a fatty acyl reductase in the formation of pollen wall substances [].; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process
Probab=99.98 E-value=1.5e-32 Score=181.01 Aligned_cols=86 Identities=37% Similarity=0.766 Sum_probs=84.5
Q ss_pred cHHHHHHhhCcCchHHHHHHHHHHHHhhccccccceeEeecccHHHHHhhCCcCCCCceeccCCCCCHHHHHHHHHHHHH
Q psy12187 10 NETWLETTSTITLVLVPIYKKLDKALAVLQPFSSRDWYFENGNVQTAWNRLSPADQSRFPFDIRDLDWDDYLETYVRGTM 89 (112)
Q Consensus 10 ~~~~l~~~~g~Kp~l~k~~rki~~~~~~l~~Ft~~eW~F~n~n~~~L~~~ls~~Dr~~F~fD~~~IdW~~Y~~~~i~Gir 89 (112)
..|.+++++|+||+++|+|+|+.+++++++||++++|+|+|+|+.+|++.|+|+|++.|+||+++|||++|+.++++|+|
T Consensus 9 ~~D~~~~l~g~kp~~~k~~~ki~~~~~~~~~F~~~eW~F~~~n~~~L~~~l~~~D~~~F~fD~~~idW~~Y~~~~~~G~r 88 (94)
T PF03015_consen 9 LLDLILRLFGQKPRMVKIYRKIRKALEVLEYFTTNEWIFDNDNTRRLWERLSPEDREIFNFDIRSIDWEEYFRNYIPGIR 88 (94)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhCceeecchHHHHHHHhCchhcCceecCCCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q psy12187 90 VYHLRD 95 (112)
Q Consensus 90 kyllKE 95 (112)
+|++||
T Consensus 89 kyllke 94 (94)
T PF03015_consen 89 KYLLKE 94 (94)
T ss_pred HHHhCC
Confidence 999998
No 2
>cd09071 FAR_C C-terminal domain of fatty acyl CoA reductases. C-terminal domain of fatty acyl CoA reductases, a family of SDR-like proteins. SDRs or short-chain dehydrogenases/reductases are Rossmann-fold NAD(P)H-binding proteins. Many proteins in this FAR_C family may function as fatty acyl-CoA reductases (FARs), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as the biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. The function of this C-terminal domain is unclear.
Probab=99.96 E-value=1.3e-29 Score=165.58 Aligned_cols=84 Identities=38% Similarity=0.737 Sum_probs=81.7
Q ss_pred cHHHHHHhhCcCchHHHHHHHHHHHHhhccccccceeEeecccHHHHHhhCCcCCCCceeccCCCCCHHHHHHHHHHHHH
Q psy12187 10 NETWLETTSTITLVLVPIYKKLDKALAVLQPFSSRDWYFENGNVQTAWNRLSPADQSRFPFDIRDLDWDDYLETYVRGTM 89 (112)
Q Consensus 10 ~~~~l~~~~g~Kp~l~k~~rki~~~~~~l~~Ft~~eW~F~n~n~~~L~~~ls~~Dr~~F~fD~~~IdW~~Y~~~~i~Gir 89 (112)
+.|.++.+.|+||+++++++|+.+++++++|||+++|+|+++|+++|++.|+|+||+.|+||+++|||++|+.++++|+|
T Consensus 9 ~~d~~~~l~g~~~~~~~~~~k~~~~~~~~~~Ft~~~w~F~~~n~~~L~~~l~~~Dr~~F~fD~~~idW~~Y~~~~~~G~r 88 (92)
T cd09071 9 LLDLLLRLLGRKPRLLKLYRKIHKLLDLLEYFTTNEWRFDNDNTRALWERLSEEDRELFNFDIRSIDWDDYFENYIPGLR 88 (92)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHhhccccCeEEeeCcHHHHHHHHCCHHHHHhCCCCCCCCCHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh
Q psy12187 90 VYHL 93 (112)
Q Consensus 90 kyll 93 (112)
+|++
T Consensus 89 ~yll 92 (92)
T cd09071 89 KYLL 92 (92)
T ss_pred HHhC
Confidence 9985
No 3
>KOG1221|consensus
Probab=99.94 E-value=2.6e-27 Score=193.08 Aligned_cols=98 Identities=32% Similarity=0.576 Sum_probs=95.6
Q ss_pred cHHHHHHhhCcCchHHHHHHHHHHHHhhccccccceeEeecccHHHHHhhCCcCCCCceeccCCCCCHHHHHHHHHHHHH
Q psy12187 10 NETWLETTSTITLVLVPIYKKLDKALAVLQPFSSRDWYFENGNVQTAWNRLSPADQSRFPFDIRDLDWDDYLETYVRGTM 89 (112)
Q Consensus 10 ~~~~l~~~~g~Kp~l~k~~rki~~~~~~l~~Ft~~eW~F~n~n~~~L~~~ls~~Dr~~F~fD~~~IdW~~Y~~~~i~Gir 89 (112)
..|+++++.|+||.++|+|+||+++.++++||++++|+|+++|+.+|++.||++|++.|+||+.++||++|+.+|++|+|
T Consensus 368 ~~d~~~~i~g~k~~~~k~~~ki~~~~~~l~~f~~~~w~Fd~~n~~~L~~~~~~~d~~~f~fd~~~ldW~ey~~~~i~G~r 447 (467)
T KOG1221|consen 368 ILDLLLRLLGKKPRLVKLYRKIHKLVKLLEPFSLFKWIFDNKNTEKLREKMSEEDKRLFNFDMKQLDWEEYFNRHLLGLR 447 (467)
T ss_pred HHHHHHHHhCCChhhhHHHHHHHHHHHhhhhheeceEEecCccHHHHHHhCCHHHHhhcCCCcccCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCc--HHHHHHHHh
Q psy12187 90 VYHLRDSFE--PEVRKKALA 107 (112)
Q Consensus 90 kyllKE~~~--~~ar~~~~~ 107 (112)
+|++||+++ |+||++++|
T Consensus 448 ~~llKe~~e~l~~~r~~~kr 467 (467)
T KOG1221|consen 448 KYLLKESPESLPQARKRLKR 467 (467)
T ss_pred HHHhcCChhhhHHHHHhhcC
Confidence 999999988 999999985
No 4
>PLN02996 fatty acyl-CoA reductase
Probab=99.86 E-value=7.1e-22 Score=162.00 Aligned_cols=84 Identities=17% Similarity=0.366 Sum_probs=78.1
Q ss_pred HHHHHH--hhCcCchHHHHHHHH---HHHHhhccccccceeEeecccHHHHHhhCCcCC---CCceeccCCCCCHHHHHH
Q psy12187 11 ETWLET--TSTITLVLVPIYKKL---DKALAVLQPFSSRDWYFENGNVQTAWNRLSPAD---QSRFPFDIRDLDWDDYLE 82 (112)
Q Consensus 11 ~~~l~~--~~g~Kp~l~k~~rki---~~~~~~l~~Ft~~eW~F~n~n~~~L~~~ls~~D---r~~F~fD~~~IdW~~Y~~ 82 (112)
.|.+.. +.|+||+++|+++|+ ++++++++|||+++|.|+|+|+.+|++.|+++| |++|+||++.|||++|+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~w~f~~~n~~~l~~~~~~~d~~d~~~f~~d~~~~~w~~y~~ 478 (491)
T PLN02996 399 LQLVNIILPKRYGDKYTDLNRKIKLVMRLVDLYKPYVFFKGIFDDTNTEKLRIKRKETGKEEADMFDFDPKSIDWEDYMT 478 (491)
T ss_pred HHHHHHHhhhccChHHHHHHHHHHHHHHHHHHhhccccceEEEccHHHHHHHHHCCccccccccEeccCcccCCHHHHHH
Confidence 455566 678999999999999 777999999999999999999999999999955 999999999999999999
Q ss_pred H-HHHHHHHHHhC
Q psy12187 83 T-YVRGTMVYHLR 94 (112)
Q Consensus 83 ~-~i~GirkyllK 94 (112)
+ |++|+|+|++|
T Consensus 479 ~~~~~g~~~y~~k 491 (491)
T PLN02996 479 NVHIPGLVKYVLK 491 (491)
T ss_pred HhhHHHHHHHhcC
Confidence 9 99999999987
No 5
>PLN02503 fatty acyl-CoA reductase 2
Probab=99.85 E-value=1.3e-21 Score=164.29 Aligned_cols=86 Identities=20% Similarity=0.390 Sum_probs=78.2
Q ss_pred HHHHHHhh-----CcCchHHHHHHHH--------HHHHhhccccccceeEeecccHHHHHhhCCcCCCCceeccCCCCCH
Q psy12187 11 ETWLETTS-----TITLVLVPIYKKL--------DKALAVLQPFSSRDWYFENGNVQTAWNRLSPADQSRFPFDIRDLDW 77 (112)
Q Consensus 11 ~~~l~~~~-----g~Kp~l~k~~rki--------~~~~~~l~~Ft~~eW~F~n~n~~~L~~~ls~~Dr~~F~fD~~~IdW 77 (112)
.|.|+++. |++|++++.++++ ++++++++|||+++|.|+|+|+++|++.|+++||+.|+||+..|||
T Consensus 505 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ft~~~w~F~~~n~~~L~~~ms~~Dr~~F~~D~~~idW 584 (605)
T PLN02503 505 RDALLRSGLAGMSSSDRKLSQKLENICAKSVEQAKYLASIYEPYTFYGGRFDNSNTQRLMERMSEEEKAEFGFDVGSIDW 584 (605)
T ss_pred HHHHHHHhhhcccccChHHHHHHHHHHHHHHHHHHHHHHHHhhheeCeEEEechHHHHHHHhCCHHHhhccCCCcCCCCH
Confidence 35566664 5999999999855 4499999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHhCCC
Q psy12187 78 DDYLET-YVRGTMVYHLRDS 96 (112)
Q Consensus 78 ~~Y~~~-~i~GirkyllKE~ 96 (112)
++|+.+ |++|+|+|++|+.
T Consensus 585 ~~Y~~~~~i~G~rky~lk~~ 604 (605)
T PLN02503 585 RDYITNVHIPGLRRHVMKGR 604 (605)
T ss_pred HHHHHHhhhhHHHHHHhccC
Confidence 999997 9999999999984
No 6
>PTZ00374 dihydroxyacetone phosphate acyltransferase; Provisional
Probab=93.36 E-value=0.049 Score=49.20 Aligned_cols=89 Identities=15% Similarity=0.218 Sum_probs=55.5
Q ss_pred ccHHHHHHhhCcCchHHHHHHHHHHHHhhcc-------ccccc-----eeEeecccHHHHHhhCCcCCCCc---e-eccC
Q psy12187 9 ANETWLETTSTITLVLVPIYKKLDKALAVLQ-------PFSSR-----DWYFENGNVQTAWNRLSPADQSR---F-PFDI 72 (112)
Q Consensus 9 ~~~~~l~~~~g~Kp~l~k~~rki~~~~~~l~-------~Ft~~-----eW~F~n~n~~~L~~~ls~~Dr~~---F-~fD~ 72 (112)
|+.+--+++.|.-..+-...+.|.++..+-. +|... .=.|...=...|.+.+.. |... . .+|.
T Consensus 377 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ll~~~~~-~~~~~~~~~~~~~ 455 (1108)
T PTZ00374 377 PNSTAARYLKGYLTQIDSVVKCITRTARAAASRSKASAYFAASKPPTASSSFNVALYHSLLRRVTS-DATLRPLHPYIAL 455 (1108)
T ss_pred CChHHHHHHHHHHHhHHHHHHHHHHHHHhhcCccccccchhhcCCCCCCccccHHHHHHHHHHHhh-cccccchHhhhHH
Confidence 4445556666666666666666555544322 22221 112333344556665553 3332 2 3699
Q ss_pred CCCCHHHHHHHHH----HHHHHHHhCCCCc
Q psy12187 73 RDLDWDDYLETYV----RGTMVYHLRDSFE 98 (112)
Q Consensus 73 ~~IdW~~Y~~~~i----~GirkyllKE~~~ 98 (112)
.+|||+.|+..++ .|+.+|++||+..
T Consensus 456 ~~i~W~~y~~~~~~~~l~~l~~~v~~~~~~ 485 (1108)
T PTZ00374 456 VEVDWDAYVKVIAQAVLEHLARQIFRSPFA 485 (1108)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999998 9999999999875
No 7
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=56.48 E-value=7.5 Score=26.63 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=22.4
Q ss_pred cccCCCcccHHHHHHhhCcCchHHHHH
Q psy12187 2 VDCGSGRANETWLETTSTITLVLVPIY 28 (112)
Q Consensus 2 ~~~~~~~~~~~~l~~~~g~Kp~l~k~~ 28 (112)
||+|||--.+..+|..-|.+-.-+.+-
T Consensus 63 VDlGCGNGLLV~IL~~EGy~G~GiD~R 89 (112)
T PF07757_consen 63 VDLGCGNGLLVYILNSEGYPGWGIDAR 89 (112)
T ss_pred EEccCCchHHHHHHHhCCCCccccccc
Confidence 899999999999999999876555443
No 8
>PF07197 DUF1409: Protein of unknown function (DUF1409); InterPro: IPR010811 This represents a short conserved region (approximately 50 residues long), sometimes repeated, within a number of hypothetical Oryza sativa proteins of unknown function.
Probab=55.45 E-value=2.3 Score=25.21 Aligned_cols=10 Identities=70% Similarity=1.095 Sum_probs=7.6
Q ss_pred CcccCCCccc
Q psy12187 1 MVDCGSGRAN 10 (112)
Q Consensus 1 ~~~~~~~~~~ 10 (112)
+||||+-|+-
T Consensus 11 v~~cg~Irar 20 (51)
T PF07197_consen 11 VVDCGSIRAR 20 (51)
T ss_pred HhccchHHHH
Confidence 5899987754
No 9
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=51.66 E-value=6.3 Score=30.12 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=24.5
Q ss_pred CcccCCCcccHHHHHHhhCcCchHHHH
Q psy12187 1 MVDCGSGRANETWLETTSTITLVLVPI 27 (112)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~g~Kp~l~k~ 27 (112)
++|.|+.-|+++|.+...-.||-++-.
T Consensus 135 vidLG~dvP~e~fve~a~e~k~d~v~~ 161 (227)
T COG5012 135 VIDLGRDVPVEEFVEKAKELKPDLVSM 161 (227)
T ss_pred EEecCCCCCHHHHHHHHHHcCCcEEec
Confidence 589999999999999999999988754
No 10
>PF00281 Ribosomal_L5: Ribosomal protein L5; InterPro: IPR002132 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L5, ~180 amino acids in length, is one of the proteins from the large ribosomal subunit. In Escherichia coli, L5 is known to be involved in binding 5S RNA to the large ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, , , ], groups: Eubacterial L5. Algal chloroplast L5. Cyanelle L5. Archaebacterial L5. Mammalian L11. Tetrahymena thermophila L21. Dictyostelium discoideum (Slime mold) L5 Saccharomyces cerevisiae (Baker's yeast) L16 (39A). Plant mitochondrial L5. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1IQ4_B 4A1A_D 4A1C_D 4A17_D 4A1E_D 3BBO_H 3O5H_K 1S1I_J 3O58_K 3IZS_E ....
Probab=50.12 E-value=6 Score=23.51 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=14.4
Q ss_pred cccCCCcccHH--------HHHHhhCcCchH
Q psy12187 2 VDCGSGRANET--------WLETTSTITLVL 24 (112)
Q Consensus 2 ~~~~~~~~~~~--------~l~~~~g~Kp~l 24 (112)
|-+|.|.+..| -|+.++|+||..
T Consensus 13 in~gvg~~~~~k~l~~a~~~L~~ItGQkp~~ 43 (56)
T PF00281_consen 13 INIGVGEAGDDKVLEKAKKELEQITGQKPVI 43 (56)
T ss_dssp EEEESSTTSSTHHHHHHHHHHHHHHSS--EE
T ss_pred EECCCCccccchHHHHHHHHHHHHhCCceeE
Confidence 44666665555 678899999964
No 11
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=45.11 E-value=9.1 Score=26.16 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=15.0
Q ss_pred CcccCCCcccHHHHHHh
Q psy12187 1 MVDCGSGRANETWLETT 17 (112)
Q Consensus 1 ~~~~~~~~~~~~~l~~~ 17 (112)
+||+|||+-.+..++-.
T Consensus 29 vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 29 VVDLGSGKGYLSRALAH 45 (141)
T ss_pred EEEeCCChhHHHHHHHH
Confidence 58999999999988877
No 12
>KOG2762|consensus
Probab=40.81 E-value=15 Score=30.20 Aligned_cols=24 Identities=25% Similarity=0.804 Sum_probs=20.1
Q ss_pred eccCCCCCHHHHHHH---HHHHHHHHH
Q psy12187 69 PFDIRDLDWDDYLET---YVRGTMVYH 92 (112)
Q Consensus 69 ~fD~~~IdW~~Y~~~---~i~Girkyl 92 (112)
.....+|||..|++. ++-|.+.|-
T Consensus 47 kV~YTEIDw~AYM~qve~fl~G~~dY~ 73 (429)
T KOG2762|consen 47 KVPYTEIDWKAYMEQVEGFLNGELDYS 73 (429)
T ss_pred ecCcceecHHHHHHHHHHHHhcccchh
Confidence 456889999999987 688999983
No 13
>PF05208 ALG3: ALG3 protein; InterPro: IPR007873 The formation of N-glycosidic linkages of glycoproteins involves the ordered assembly of the common Glc3Man9GlcNAc2 core-oligosaccharide on the lipid carrier dolichyl pyrophosphate. Whereas early mannosylation steps occur on the cytoplasmic side of the endoplasmic reticulum with GDP-Man as donor, the final reactions from Man5GlcNAc2-PP-Dol to Man9GlcNAc2-PP-Dol on the lumenal side use Dol-P-Man []. The ALG3 gene encodes the Dol-P-Man:Man5GlcNAc2-PP-Dol mannosyltransferase.; GO: 0016758 transferase activity, transferring hexosyl groups, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=40.34 E-value=15 Score=30.01 Aligned_cols=27 Identities=19% Similarity=0.587 Sum_probs=21.3
Q ss_pred eccCCCCCHHHHHHH---HHHHHHHHHhCC
Q psy12187 69 PFDIRDLDWDDYLET---YVRGTMVYHLRD 95 (112)
Q Consensus 69 ~fD~~~IdW~~Y~~~---~i~GirkyllKE 95 (112)
..-..+|||..|++. +..|-+.|-.=+
T Consensus 19 ~VpYTEIDw~aYMqqv~~~~~Ge~DYs~i~ 48 (368)
T PF05208_consen 19 KVPYTEIDWKAYMQQVEGFLNGERDYSKIK 48 (368)
T ss_pred eccCccccHHHHHHHHHHHHcCcccHHHhc
Confidence 345789999999987 788999995433
No 14
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=40.26 E-value=16 Score=28.35 Aligned_cols=16 Identities=44% Similarity=0.524 Sum_probs=14.1
Q ss_pred CcccCCCcccHHHHHH
Q psy12187 1 MVDCGSGRANETWLET 16 (112)
Q Consensus 1 ~~~~~~~~~~~~~l~~ 16 (112)
|||.|||--|.|-|+-
T Consensus 34 v~DLGCGpGnsTelL~ 49 (257)
T COG4106 34 VVDLGCGPGNSTELLA 49 (257)
T ss_pred eeecCCCCCHHHHHHH
Confidence 6899999999998874
No 15
>PF07377 DUF1493: Protein of unknown function (DUF1493); InterPro: IPR010862 This family consists of several bacterial proteins of around 115 residues in length. Members of this family are largely found in Salmonella and Yersinia species and several have been described as being putative cytoplasmic proteins. The function of this family is unknown.
Probab=40.19 E-value=13 Score=24.75 Aligned_cols=16 Identities=44% Similarity=0.991 Sum_probs=15.0
Q ss_pred CceeccCCCCCHHHHH
Q psy12187 66 SRFPFDIRDLDWDDYL 81 (112)
Q Consensus 66 ~~F~fD~~~IdW~~Y~ 81 (112)
+.|+.|++.+||..|+
T Consensus 53 ~~F~Vd~~~f~~~~YF 68 (111)
T PF07377_consen 53 ERFNVDLSDFDFDRYF 68 (111)
T ss_pred HHhCCCcCccCHHHcc
Confidence 5699999999999999
No 16
>COG3945 Uncharacterized conserved protein [Function unknown]
Probab=34.37 E-value=48 Score=24.68 Aligned_cols=32 Identities=16% Similarity=0.023 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCc--HHHHHHH
Q psy12187 74 DLDWDDYLETYVRGTMVYHLRDSFE--PEVRKKA 105 (112)
Q Consensus 74 ~IdW~~Y~~~~i~GirkyllKE~~~--~~ar~~~ 105 (112)
..+-.+|...|+-|++++|-||+.+ |-|++-+
T Consensus 115 ~~~~i~~A~~y~~likrHIdkEdnvlfp~a~~~~ 148 (189)
T COG3945 115 KDDVIDYAVAYLNLIKRHIDKEDNVLFPFAESTL 148 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3456789999999999999999998 8777654
No 17
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=33.14 E-value=25 Score=22.70 Aligned_cols=32 Identities=22% Similarity=0.191 Sum_probs=22.5
Q ss_pred cCCCcccHHHHHHhhCcCchHHHHHHH---HHHHHhhcc
Q psy12187 4 CGSGRANETWLETTSTITLVLVPIYKK---LDKALAVLQ 39 (112)
Q Consensus 4 ~~~~~~~~~~l~~~~g~Kp~l~k~~rk---i~~~~~~l~ 39 (112)
=|||-||-|-++ ..|.--+-+|| |+++++-+.
T Consensus 38 PGsGe~NfDs~e----~NP~et~kqRrE~EV~~LLeKip 72 (80)
T PF08149_consen 38 PGSGEPNFDSLE----ANPFETKKQRREREVRSLLEKIP 72 (80)
T ss_pred cCCCCCCCCccc----CCcccchhHHhHHHHHHHHHhCC
Confidence 489999999877 67777777776 444444443
No 18
>KOG3414|consensus
Probab=30.21 E-value=14 Score=26.13 Aligned_cols=34 Identities=12% Similarity=0.219 Sum_probs=26.0
Q ss_pred CcccCCCcccHHHHHHhhCcCchHHHHHHHHHHHHh
Q psy12187 1 MVDCGSGRANETWLETTSTITLVLVPIYKKLDKALA 36 (112)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~g~Kp~l~k~~rki~~~~~ 36 (112)
|+|||+| +-+++-..+--|+.++.+..-+++++-
T Consensus 91 kiD~gtg--dn~Kin~~~~~kq~~Idiie~iyRga~ 124 (142)
T KOG3414|consen 91 KIDLGTG--DNNKINFAFEDKQEFIDIIETIYRGAR 124 (142)
T ss_pred EEeeCCC--CCceEEEEeccHHHHHHHHHHHHHhhh
Confidence 5788775 567788888888999988887777653
No 19
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=28.95 E-value=58 Score=24.52 Aligned_cols=55 Identities=20% Similarity=0.387 Sum_probs=28.5
Q ss_pred HHHHhhC-cCchHHHHHHHHHHHHhhcc-----ccccceeEeecccHHHHHhhCCcCCCCce
Q psy12187 13 WLETTST-ITLVLVPIYKKLDKALAVLQ-----PFSSRDWYFENGNVQTAWNRLSPADQSRF 68 (112)
Q Consensus 13 ~l~~~~g-~Kp~l~k~~rki~~~~~~l~-----~Ft~~eW~F~n~n~~~L~~~ls~~Dr~~F 68 (112)
+=...-| ++++|-.-||...+=.++|. | +-++|.|+.+|-.++=...+.-..-.|
T Consensus 135 f~~~~~~~k~~~Me~FYR~mRkr~~ILmd~~g~P-~GGkWnfD~eNRk~~p~~~~~P~~~~~ 195 (224)
T PF04244_consen 135 FAEWFEGRKRLRMEYFYREMRKRFGILMDEDGKP-VGGKWNFDAENRKKLPKGIPIPEPPRF 195 (224)
T ss_dssp HHHHHTT-SS--HHHHHHHHHHHHTTTE-ETTEE-GGGSS--GGGS-------TTS------
T ss_pred HHHHHccCCceeHHHHHHHHHHHcCccccCCCCc-CCCcCCCChhhccCCCCCCCCCCCCCC
Confidence 3344445 55788889999998888887 5 568999999999998877765444333
No 20
>PF11084 DUF2621: Protein of unknown function (DUF2621); InterPro: IPR020203 This entry represents a group of uncharacterised proteins.
Probab=26.65 E-value=82 Score=22.28 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=25.3
Q ss_pred HHhhccccccceeEeecccHHHHHhhCCcCCCCceeccCCCCCHHHHHHH
Q psy12187 34 ALAVLQPFSSRDWYFENGNVQTAWNRLSPADQSRFPFDIRDLDWDDYLET 83 (112)
Q Consensus 34 ~~~~l~~Ft~~eW~F~n~n~~~L~~~ls~~Dr~~F~fD~~~IdW~~Y~~~ 83 (112)
+..+-.||++ ++....|+.+|. -+.+||++|.-+
T Consensus 20 l~~IGGfFMF----------RKFLK~lPKeDG------kS~LDWq~~yi~ 53 (141)
T PF11084_consen 20 LMAIGGFFMF----------RKFLKRLPKEDG------KSILDWQEYYIE 53 (141)
T ss_pred HHHHhHHHHH----------HHHHHhCCcccC------cccccHHHHHHH
Confidence 4555666664 567889999986 468999998755
No 21
>COG4479 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.92 E-value=28 Score=22.03 Aligned_cols=32 Identities=25% Similarity=0.633 Sum_probs=22.8
Q ss_pred cccHHHHHhhCCcCCCCceeccCCCCC--HHHHHHH
Q psy12187 50 NGNVQTAWNRLSPADQSRFPFDIRDLD--WDDYLET 83 (112)
Q Consensus 50 n~n~~~L~~~ls~~Dr~~F~fD~~~Id--W~~Y~~~ 83 (112)
+++...+..-|. +..-|.++++.+| |++|+..
T Consensus 38 t~Df~~is~YLE--~~a~f~~~m~~FDeiwe~Yle~ 71 (74)
T COG4479 38 TDDFHEISDYLE--TNADFLFNMSVFDEIWEEYLEH 71 (74)
T ss_pred CccHHHHHHHHH--hcCCcccchhhHHHHHHHHHHH
Confidence 455566655554 3566889999998 9999864
No 22
>PF06889 DUF1266: Protein of unknown function (DUF1266); InterPro: IPR009677 This family consists of several hypothetical bacterial proteins of around 235 residues in length. Members of this family seem to be found exclusively in the Enterobacteria Salmonella typhimurium and Escherichia coli. The function of this family is unknown.
Probab=25.83 E-value=55 Score=22.44 Aligned_cols=23 Identities=22% Similarity=0.631 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCc
Q psy12187 76 DWDDYLETYVRGTMVYHLRDSFE 98 (112)
Q Consensus 76 dW~~Y~~~~i~GirkyllKE~~~ 98 (112)
+|++|...|+.|-.-+....+..
T Consensus 123 sWee~~~sy~~G~~~w~~~~~~~ 145 (172)
T PF06889_consen 123 SWEEYAASYLLGRAYWSGEDDDD 145 (172)
T ss_pred CHHHHHHHHHHHHHHHcCCCccc
Confidence 79999999999987776655444
No 23
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=25.53 E-value=41 Score=22.27 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=12.6
Q ss_pred CcccCCCcccHHHHHHhhCc
Q psy12187 1 MVDCGSGRANETWLETTSTI 20 (112)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~g~ 20 (112)
++|+|||.......+.-.|.
T Consensus 26 vLDiGcG~G~~~~~l~~~~~ 45 (161)
T PF13489_consen 26 VLDIGCGTGSFLRALAKRGF 45 (161)
T ss_dssp EEEESSTTSHHHHHHHHTTS
T ss_pred EEEEcCCCCHHHHHHHHhCC
Confidence 47999998765444444443
No 24
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=24.52 E-value=21 Score=24.23 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=24.7
Q ss_pred CcccCCCcccHHHHHH-hhCc---------CchHHHHHHHHHHHHhhccccccceeEeecccHHH
Q psy12187 1 MVDCGSGRANETWLET-TSTI---------TLVLVPIYKKLDKALAVLQPFSSRDWYFENGNVQT 55 (112)
Q Consensus 1 ~~~~~~~~~~~~~l~~-~~g~---------Kp~l~k~~rki~~~~~~l~~Ft~~eW~F~n~n~~~ 55 (112)
++|+|||--.....+. ..+. .|.+++..++. .+..-..+..|...++..
T Consensus 7 iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~------~~~~~~~ni~~~~~d~~~ 65 (152)
T PF13847_consen 7 ILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKR------AKELGLDNIEFIQGDIED 65 (152)
T ss_dssp EEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHH------HHHTTSTTEEEEESBTTC
T ss_pred EEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcc------cccccccccceEEeehhc
Confidence 4788888666555444 3222 34444444432 222222256777777766
No 25
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=24.11 E-value=1.3e+02 Score=24.73 Aligned_cols=85 Identities=4% Similarity=-0.043 Sum_probs=58.2
Q ss_pred HHHHhhCcCchHHHHHHHHHHHHhh--ccccccceeEeeccc-HHHHHhhCCcCCCCceeccCC--CCCHHHHHHHHHHH
Q psy12187 13 WLETTSTITLVLVPIYKKLDKALAV--LQPFSSRDWYFENGN-VQTAWNRLSPADQSRFPFDIR--DLDWDDYLETYVRG 87 (112)
Q Consensus 13 ~l~~~~g~Kp~l~k~~rki~~~~~~--l~~Ft~~eW~F~n~n-~~~L~~~ls~~Dr~~F~fD~~--~IdW~~Y~~~~i~G 87 (112)
+++.++|.+|...|+.--+..+-+- ++.+..+.-.=.+.+ .....+.+.. .+-.|..|+. .-+-.+-..+.+.|
T Consensus 5 Kv~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i-~~pdy~L~i~~~~~tl~~~t~~~i~~ 83 (383)
T COG0381 5 KVLTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGI-RKPDYDLNIMKPGQTLGEITGNIIEG 83 (383)
T ss_pred EEEEEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCC-CCCCcchhccccCCCHHHHHHHHHHH
Confidence 3567899999999988777777665 666666554422212 2222333332 2255778877 77788889999999
Q ss_pred HHHHHhCCCCc
Q psy12187 88 TMVYHLRDSFE 98 (112)
Q Consensus 88 irkyllKE~~~ 98 (112)
+.+-+.++.|+
T Consensus 84 ~~~vl~~~kPD 94 (383)
T COG0381 84 LSKVLEEEKPD 94 (383)
T ss_pred HHHHHHhhCCC
Confidence 99999988775
No 26
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=22.94 E-value=25 Score=22.12 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=17.0
Q ss_pred CcccCCCcccHHHHHHh--hC-------cCchHHHHHHHHH
Q psy12187 1 MVDCGSGRANETWLETT--ST-------ITLVLVPIYKKLD 32 (112)
Q Consensus 1 ~~~~~~~~~~~~~l~~~--~g-------~Kp~l~k~~rki~ 32 (112)
++|+|||--....-+-- .| ..|.++...++-.
T Consensus 5 vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~ 45 (112)
T PF12847_consen 5 VLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERA 45 (112)
T ss_dssp EEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHH
T ss_pred EEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 46777776554332222 33 3467777666543
No 27
>PRK14011 prefoldin subunit alpha; Provisional
Probab=22.22 E-value=77 Score=22.37 Aligned_cols=33 Identities=18% Similarity=0.073 Sum_probs=21.3
Q ss_pred CcccCCCc----ccHHHHHHhhCcCchHHHHHHHHHH
Q psy12187 1 MVDCGSGR----ANETWLETTSTITLVLVPIYKKLDK 33 (112)
Q Consensus 1 ~~~~~~~~----~~~~~l~~~~g~Kp~l~k~~rki~~ 33 (112)
+||+|+|= +.++-..++-.+.-.+-+...++..
T Consensus 73 lVdIGtGy~VEk~~~eA~~~~~~ri~~l~~~~~~l~~ 109 (144)
T PRK14011 73 ILGVGSDIYLEKDVSEVIEDFKKSVEELDKTKKEGNK 109 (144)
T ss_pred EEEccCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999995 4556666666666666665554433
No 28
>COG2184 Fic Protein involved in cell division [Cell division and chromosome partitioning]
Probab=22.13 E-value=3.5e+02 Score=20.34 Aligned_cols=70 Identities=19% Similarity=0.220 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHhhccccccceeEeecccHHHHHhhCCcCCCCceeccCCCCCHHHHHHHHHHHHHHHHhCCCCc
Q psy12187 23 VLVPIYKKLDKALAVLQPFSSRDWYFENGNVQTAWNRLSPADQSRFPFDIRDLDWDDYLETYVRGTMVYHLRDSFE 98 (112)
Q Consensus 23 ~l~k~~rki~~~~~~l~~Ft~~eW~F~n~n~~~L~~~ls~~Dr~~F~fD~~~IdW~~Y~~~~i~GirkyllKE~~~ 98 (112)
.+++..-+.+.-.++.+||..+ |....+++-.+--++. -+.+|-..++=..|++....|..++.+-+++.
T Consensus 114 ~~~e~~~~~~~ein~~HPFreG-----NGRs~rif~d~ll~~~-g~~idW~~~~~~~~~~a~~~~~~~~~~~~~~~ 183 (201)
T COG2184 114 DFVERAAHKYVEINIAHPFREG-----NGRSTRIFLDLLLKEL-GKAIDWQSISKEAYLQALRRGPNAKALADLTA 183 (201)
T ss_pred hHHHHHHHHHhhhheeccccCC-----CcHHHHHHHHHHHHHh-CcccCCccccHHHHHHHHHhcchhhhhccccc
Confidence 4555555667778899999888 4555555544333343 78899999999999999999988887777665
No 29
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=22.02 E-value=45 Score=22.17 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=22.2
Q ss_pred EeecccHHHHHhhCCcCCCCceeccCCCCCHHHHH
Q psy12187 47 YFENGNVQTAWNRLSPADQSRFPFDIRDLDWDDYL 81 (112)
Q Consensus 47 ~F~n~n~~~L~~~ls~~Dr~~F~fD~~~IdW~~Y~ 81 (112)
.|..+|+.++++.+++++|..- +.+|=|+.-.
T Consensus 36 vFG~sni~k~L~~~~~~~R~~a---~~Sl~yEA~~ 67 (101)
T PF03195_consen 36 VFGVSNISKMLQELPPEQREDA---MRSLVYEANA 67 (101)
T ss_pred HHchhHHHHHHHhCCccchhhH---HHHHHHHHHh
Confidence 3668999999999999987432 3444444433
No 30
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=22.00 E-value=33 Score=21.24 Aligned_cols=13 Identities=46% Similarity=0.884 Sum_probs=4.8
Q ss_pred cCCCcccHHHHHH
Q psy12187 4 CGSGRANETWLET 16 (112)
Q Consensus 4 ~~~~~~~~~~l~~ 16 (112)
||+|+.....+..
T Consensus 5 cG~G~~~~~l~~~ 17 (99)
T PF08242_consen 5 CGTGRLLRALLEE 17 (99)
T ss_dssp TTTS-TTTTHHHH
T ss_pred ccChHHHHHHHHh
Confidence 3344444433333
No 31
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=21.82 E-value=30 Score=21.69 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=7.7
Q ss_pred CcccCCCcccHHHH
Q psy12187 1 MVDCGSGRANETWL 14 (112)
Q Consensus 1 ~~~~~~~~~~~~~l 14 (112)
++|.|||--....-
T Consensus 1 ILDlgcG~G~~~~~ 14 (101)
T PF13649_consen 1 ILDLGCGTGRVTRA 14 (101)
T ss_dssp -EEET-TTSHHHHH
T ss_pred CEEeecCCcHHHHH
Confidence 57888887555443
No 32
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=21.63 E-value=29 Score=24.47 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=26.8
Q ss_pred CcccCCCcccHHHHHHhhCcCchHHHHHHHHHHHHhhc
Q psy12187 1 MVDCGSGRANETWLETTSTITLVLVPIYKKLDKALAVL 38 (112)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~g~Kp~l~k~~rki~~~~~~l 38 (112)
|||+|.| +-+++-..+..|+.++.+..-+++.+..-
T Consensus 88 ~vD~Gtg--nnnKin~~~~~kqe~iDiie~iyrga~kG 123 (133)
T PF02966_consen 88 MVDFGTG--NNNKINWAFEDKQEFIDIIETIYRGARKG 123 (133)
T ss_dssp EEESSSS--SSSSBCS--SCHHHHHHHHHHHHHHHHTT
T ss_pred EEEecCC--CccEEEEEcCcHHHHHHHHHHHHHHhhcC
Confidence 5787765 55788889999999999998888877543
No 33
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=21.62 E-value=51 Score=25.90 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=18.5
Q ss_pred CcccCCCcccHHHHHHhhCcCc
Q psy12187 1 MVDCGSGRANETWLETTSTITL 22 (112)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~g~Kp 22 (112)
++|+|||--.+.-.-...|.+.
T Consensus 165 vLDvG~GSGILaiaA~klGA~~ 186 (295)
T PF06325_consen 165 VLDVGCGSGILAIAAAKLGAKK 186 (295)
T ss_dssp EEEES-TTSHHHHHHHHTTBSE
T ss_pred EEEeCCcHHHHHHHHHHcCCCe
Confidence 5799999999999999999983
Done!