Query psy12187
Match_columns 112
No_of_seqs 104 out of 566
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 20:55:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12187.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12187hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2juy_A Neopetrosiamide A; amph 77.5 0.85 2.9E-05 22.5 1.0 12 1-12 9-20 (28)
2 2eo2_A Adult MALE hypothalamus 25.7 5.8 0.0002 24.1 -1.8 20 58-77 48-70 (71)
3 2a14_A Indolethylamine N-methy 23.7 17 0.00057 25.8 -0.0 30 1-30 59-96 (263)
4 3mti_A RRNA methylase; SAM-dep 22.9 17 0.0006 23.8 -0.0 32 1-32 26-64 (185)
5 3mq2_A 16S rRNA methyltransfer 21.5 18 0.0006 24.5 -0.2 16 1-16 31-46 (218)
6 3p2e_A 16S rRNA methylase; met 20.2 19 0.00066 25.2 -0.3 13 1-13 28-40 (225)
7 3i9f_A Putative type 11 methyl 19.2 21 0.00072 23.0 -0.3 15 1-15 21-35 (170)
8 2p8j_A S-adenosylmethionine-de 19.1 21 0.00073 23.7 -0.3 11 1-11 27-37 (209)
9 2jxf_A NS4B(40-69), genome pol 18.7 95 0.0032 15.5 2.2 13 77-89 11-23 (30)
10 2g72_A Phenylethanolamine N-me 18.6 22 0.00076 25.3 -0.3 12 1-12 75-86 (289)
No 1
>2juy_A Neopetrosiamide A; amphipathic, antitumor protein; HET: SME; NMR {Neopetrosia SP}
Probab=77.49 E-value=0.85 Score=22.45 Aligned_cols=12 Identities=42% Similarity=0.927 Sum_probs=9.7
Q ss_pred CcccCCCcccHH
Q psy12187 1 MVDCGSGRANET 12 (112)
Q Consensus 1 ~~~~~~~~~~~~ 12 (112)
+||||..||-.|
T Consensus 9 lvdcgpnrpcrd 20 (28)
T 2juy_A 9 LVDCGPNRPCRD 20 (28)
T ss_dssp TTTSCTTSCCEE
T ss_pred EeecCCCCcccc
Confidence 589999999654
No 2
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.72 E-value=5.8 Score=24.13 Aligned_cols=20 Identities=20% Similarity=0.584 Sum_probs=14.6
Q ss_pred hhCCcCCCCce---eccCCCCCH
Q psy12187 58 NRLSPADQSRF---PFDIRDLDW 77 (112)
Q Consensus 58 ~~ls~~Dr~~F---~fD~~~IdW 77 (112)
+.|++++...| ++|+++|-|
T Consensus 48 ~~LT~eEi~~FaRLdIDP~TITw 70 (71)
T 2eo2_A 48 STLTEEEVRKFARLNIDPATITW 70 (71)
T ss_dssp TTCCHHHHHHHHHTCCCSTTCCC
T ss_pred ccCCHHHHhhceecccCccceee
Confidence 45667776665 788999888
No 3
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=23.73 E-value=17 Score=25.82 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=17.4
Q ss_pred CcccCCCcccHHHHHHhhCcC--------chHHHHHHH
Q psy12187 1 MVDCGSGRANETWLETTSTIT--------LVLVPIYKK 30 (112)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~g~K--------p~l~k~~rk 30 (112)
++|+|||--...-++...|.+ |.++...++
T Consensus 59 vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~ 96 (263)
T 2a14_A 59 LIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEK 96 (263)
T ss_dssp EEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHH
T ss_pred EEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHH
Confidence 479999985554444344432 556665543
No 4
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=22.87 E-value=17 Score=23.79 Aligned_cols=32 Identities=16% Similarity=0.030 Sum_probs=18.6
Q ss_pred CcccCCCcccHHHHHHhhCc-------CchHHHHHHHHH
Q psy12187 1 MVDCGSGRANETWLETTSTI-------TLVLVPIYKKLD 32 (112)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~g~-------Kp~l~k~~rki~ 32 (112)
++|+|||--.....+--.|. .|.++..-++-.
T Consensus 26 vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~ 64 (185)
T 3mti_A 26 VVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRL 64 (185)
T ss_dssp EEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHH
Confidence 47889987766554432232 466666555433
No 5
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=21.48 E-value=18 Score=24.51 Aligned_cols=16 Identities=19% Similarity=0.522 Sum_probs=10.4
Q ss_pred CcccCCCcccHHHHHH
Q psy12187 1 MVDCGSGRANETWLET 16 (112)
Q Consensus 1 ~~~~~~~~~~~~~l~~ 16 (112)
++|+|||--.....+.
T Consensus 31 vLDiGcG~G~~~~~la 46 (218)
T 3mq2_A 31 VLDVGTGDGKHPYKVA 46 (218)
T ss_dssp EEEESCTTCHHHHHHH
T ss_pred EEEecCCCCHHHHHHH
Confidence 4788888766554433
No 6
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=20.15 E-value=19 Score=25.15 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=8.5
Q ss_pred CcccCCCcccHHH
Q psy12187 1 MVDCGSGRANETW 13 (112)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (112)
++|+|||--....
T Consensus 28 vLDiGCG~G~~~~ 40 (225)
T 3p2e_A 28 HIDLGTGDGRNIY 40 (225)
T ss_dssp EEEETCTTSHHHH
T ss_pred EEEEeccCcHHHH
Confidence 4788888665443
No 7
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=19.16 E-value=21 Score=22.97 Aligned_cols=15 Identities=27% Similarity=0.260 Sum_probs=9.5
Q ss_pred CcccCCCcccHHHHH
Q psy12187 1 MVDCGSGRANETWLE 15 (112)
Q Consensus 1 ~~~~~~~~~~~~~l~ 15 (112)
++|+|||--.....+
T Consensus 21 vLDiG~G~G~~~~~l 35 (170)
T 3i9f_A 21 IVDYGCGNGFYCKYL 35 (170)
T ss_dssp EEEETCTTCTTHHHH
T ss_pred EEEECCCCCHHHHHH
Confidence 478888876544433
No 8
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=19.06 E-value=21 Score=23.67 Aligned_cols=11 Identities=36% Similarity=0.881 Sum_probs=7.7
Q ss_pred CcccCCCcccH
Q psy12187 1 MVDCGSGRANE 11 (112)
Q Consensus 1 ~~~~~~~~~~~ 11 (112)
++|+|||.-..
T Consensus 27 vLDiGcG~G~~ 37 (209)
T 2p8j_A 27 VLDCGAGGDLP 37 (209)
T ss_dssp EEEESCCSSSC
T ss_pred EEEECCCCCHH
Confidence 47888886543
No 9
>2jxf_A NS4B(40-69), genome polyprotein; membrane associated segment, acetylation, apoptosis, ATP- binding, capsid protein, cytoplasm, endoplasmic reticulum; NMR {Synthetic}
Probab=18.74 E-value=95 Score=15.47 Aligned_cols=13 Identities=15% Similarity=0.621 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHH
Q psy12187 77 WDDYLETYVRGTM 89 (112)
Q Consensus 77 W~~Y~~~~i~Gir 89 (112)
|..-+.+++.||+
T Consensus 11 W~khMwNfvSGIQ 23 (30)
T 2jxf_A 11 WAKHMWNFISGIQ 23 (30)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6777788888885
No 10
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=18.61 E-value=22 Score=25.31 Aligned_cols=12 Identities=33% Similarity=0.548 Sum_probs=8.0
Q ss_pred CcccCCCcccHH
Q psy12187 1 MVDCGSGRANET 12 (112)
Q Consensus 1 ~~~~~~~~~~~~ 12 (112)
++|+|||--...
T Consensus 75 vLDiGcG~G~~~ 86 (289)
T 2g72_A 75 LIDIGSGPTVYQ 86 (289)
T ss_dssp EEEETCTTCCGG
T ss_pred EEEECCCcChHH
Confidence 478888865533
Done!