RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12187
(112 letters)
>gnl|CDD|176924 cd09071, FAR_C, C-terminal domain of fatty acyl CoA reductases.
C-terminal domain of fatty acyl CoA reductases, a
family of SDR-like proteins. SDRs or short-chain
dehydrogenases/reductases are Rossmann-fold
NAD(P)H-binding proteins. Many proteins in this FAR_C
family may function as fatty acyl-CoA reductases
(FARs), acting on medium and long chain fatty acids,
and have been reported to be involved in diverse
processes such as the biosynthesis of insect
pheromones, plant cuticular wax production, and
mammalian wax biosynthesis. In Arabidopsis thaliana,
proteins with this particular architecture have also
been identified as the MALE STERILITY 2 (MS2) gene
product, which is implicated in male gametogenesis.
Mutations in MS2 inhibit the synthesis of exine
(sporopollenin), rendering plants unable to reduce
pollen wall fatty acids to corresponding alcohols. The
function of this C-terminal domain is unclear.
Length = 92
Score = 87.6 bits (218), Expect = 4e-24
Identities = 30/68 (44%), Positives = 44/68 (64%)
Query: 24 LVPIYKKLDKALAVLQPFSSRDWYFENGNVQTAWNRLSPADQSRFPFDIRDLDWDDYLET 83
L+ +Y+K+ K L +L+ F++ +W F+N N + W RLS D+ F FDIR +DWDDY E
Sbjct: 23 LLKLYRKIHKLLDLLEYFTTNEWRFDNDNTRALWERLSEEDRELFNFDIRSIDWDDYFEN 82
Query: 84 YVRGTMVY 91
Y+ G Y
Sbjct: 83 YIPGLRKY 90
>gnl|CDD|111859 pfam03015, Sterile, Male sterility protein. This family
represents the C-terminal region of the male sterility
protein in a number of arabidopsis and drosophila. A
sequence-related jojoba acyl CoA reductase is also
included.
Length = 94
Score = 70.7 bits (174), Expect = 2e-17
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 24 LVPIYKKLDKALAVLQPFSSRDWYFENGNVQTAWNRLSPADQSRFPFDIRDLDWDDYLET 83
LV +Y+K+ K L VLQPFS +W F+N N + ++S D+ F FD+ LDWD+Y
Sbjct: 23 LVKLYRKIHKGLEVLQPFSLNEWIFDNKNTRELREKMSEEDKKLFNFDMESLDWDEYFRN 82
Query: 84 YVRGTMVYHLRD 95
+RG Y L++
Sbjct: 83 AIRGIRKYLLKE 94
>gnl|CDD|215279 PLN02503, PLN02503, fatty acyl-CoA reductase 2.
Length = 605
Score = 46.4 bits (110), Expect = 4e-07
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 37 VLQPFSSRDWYFENGNVQTAWNRLSPADQSRFPFDIRDLDWDDYL 81
+ +P++ F+N N Q R+S +++ F FD+ +DW DY+
Sbjct: 544 IYEPYTFYGGRFDNSNTQRLMERMSEEEKAEFGFDVGSIDWRDYI 588
>gnl|CDD|238173 cd00279, YlxR, Ylxr homologs; group of conserved hypothetical
bacterial proteins of unknown function; structure
revealed putative RNA binding cleft; proteins are
encoded by an operon that includes other proteins
involved in transcription and/or translation.
Length = 79
Score = 25.8 bits (57), Expect = 2.4
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 86 RGTMVYHLRDSFEPEVRKKALARYFRS 112
RG V R+ E +KK R F++
Sbjct: 39 RGAYVCADRECIEKAKKKKLFNRAFKA 65
>gnl|CDD|183721 PRK12749, PRK12749, quinate/shikimate dehydrogenase; Reviewed.
Length = 288
Score = 26.5 bits (58), Expect = 3.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 87 GTMVYHLRDSFEPEVRKKALAR 108
G M Y +R S PE++ KAL +
Sbjct: 11 GLMAYPIRHSLSPEMQNKALEK 32
>gnl|CDD|215538 PLN02996, PLN02996, fatty acyl-CoA reductase.
Length = 491
Score = 26.6 bits (59), Expect = 3.5
Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 68 FPFDIRDLDWDDYL-ETYVRGTMVYHLR 94
F FD + +DW+DY+ ++ G + Y L+
Sbjct: 464 FDFDPKSIDWEDYMTNVHIPGLVKYVLK 491
>gnl|CDD|213700 TIGR02310, HpaB-2, 4-hydroxyphenylacetate 3-monooxygenase,
oxygenase component. This gene for this monooxygenase
is found within apparent operons for the degradation of
4-hydroxyphenylacetic acid in Shigella, Photorhabdus and
Pasteurella. The family modelled by This model is
narrowly limited to gammaproteobacteria to exclude other
aromatic hydroxylases involved in various secondary
metabolic pathways. Generally, this enzyme acts with the
assistance of a small flavin reductase domain protein
(HpaC) to provide the cycle the flavin reductant for the
reaction. This family of sequences is a member of a
larger subfamily of monooxygenases (pfam03241).
Length = 519
Score = 26.4 bits (58), Expect = 3.9
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Query: 68 FPFDIRDLD---WDDYLETYVRGT 88
P IRDL+ D YLE YVRG+
Sbjct: 403 LPSHIRDLNNPQIDQYLEKYVRGS 426
>gnl|CDD|236993 PRK11820, PRK11820, hypothetical protein; Provisional.
Length = 288
Score = 26.3 bits (59), Expect = 4.0
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 80 YLETYVRGTMVYHLRDSFEPEVRKKALARYFR 111
YL+ R + LR S EPE+R++ R R
Sbjct: 31 YLDLNFR--LPEQLR-SLEPELRERIRKRLSR 59
>gnl|CDD|240118 cd04814, PA_M28_1, PA_M28_1: Protease-associated (PA) domain,
peptidase family M28, subfamily-1. A subfamily of
PA-domain containing proteins belonging to the peptidase
family M28. Family M28 contains aminopeptidases and
carboxypeptidases, and has co-catalytic zinc ions. The
PA domain is an insert domain in a diverse fraction of
proteases. The significance of the PA domain to many of
the proteins in which it is inserted is undetermined. It
may be a protein-protein interaction domain. At
peptidase active sites, the PA domain may participate in
substrate binding and/or promoting conformational
changes, which influence the stability and accessibility
of the site to substrate. Proteins into which the PA
domain is inserted include the following members of the
peptidase family M28: i) prostate-specific membrane
antigen (PSMA), ii) yeast aminopeptidase Y, and ii)
human TfR (transferrin receptor)1 and human TfR2. The
proteins listed above belong to other subfamilies,
relatively little is known about proteins in this
subfamily.
Length = 142
Score = 25.7 bits (56), Expect = 4.2
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 74 DLDWDDYLETYVRGTMVYHLR-----DSFEPEVRKKALARYFRS 112
+L WDDY V+G +V LR + + KA+ Y R
Sbjct: 35 ELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRW 78
>gnl|CDD|176526 cd08584, PI-PLCc_GDPD_SF_unchar2, Uncharacterized hypothetical
proteins similar to the catalytic domains of
Phosphoinositide-specific phospholipaseand
Glycerophosphodiester phosphodiesterases. This
subfamily corresponds to a group of uncharacterized
hypothetical proteins similar to the catalytic domains
of Phosphoinositide-specific phospholipase C (PI-PLC),
and glycerophosphodiester phosphodiesterases (GP-GDE),
and also sphingomyelinases D (SMases D) and similar
proteins. They hydrolyze the 3'-5' phosphodiester bonds
in different substrates, utilizing a similar mechanism
of general base and acid catalysis involving two
conserved histidine residues.
Length = 192
Score = 25.8 bits (57), Expect = 4.8
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 69 PFDIRDLDWDDYLETYVRGTMVYHLR-DSFEPEVRKKALARY 109
PF +D+L+ Y GT++ +++ + E + KK LA Y
Sbjct: 38 PFVKNGELLEDWLKEYNHGTLILNIKAEGLELRL-KKLLAEY 78
>gnl|CDD|233884 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukaryotic type.
Members of this family are eukaryotic (with one
exception) ATP-dependent 6-phosphofructokinases (EC
2.7.1.11) in which two tandem copies of the
phosphofructokinase are found. Members are found, often
including several isozymes, in animals and fungi and in
the bacterium Propionibacterium acnes KPA171202 (a human
skin commensal).
Length = 746
Score = 26.1 bits (58), Expect = 4.9
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 11/40 (27%)
Query: 69 PFDIRDLDWDDYLETYVRGTMVYHLRDSFEPEVRKKALAR 108
++DL D + HL+++F K + R
Sbjct: 588 GISLKDLQED-----------IEHLKETFAEGRAGKLILR 616
>gnl|CDD|203593 pfam07200, Mod_r, Modifier of rudimentary (Mod(r)) protein. This
family represents a conserved region approximately 150
residues long within a number of eukaryotic proteins
that show homology with Drosophila melanogaster Modifier
of rudimentary (Mod(r)) proteins. The N-terminal half of
Mod(r) proteins is acidic, whereas the C-terminal half
is basic, and both of these regions are represented in
this family. Members of this family include the Vps37
subunit of the endosomal sorting complex ESCRT-I, a
complex involved in recruiting transport machinery for
protein sorting at the multivesicular body (MVB). The
yeast ESCRT-I complex consists of three proteins (Vps23,
Vps28 and Vps37). The mammalian homologue of Vps37
interacts with Tsg101 (Pfam: PF05743) through its mod(r)
domain and its function is essential for lysosomal
sorting of EGF receptors.
Length = 150
Score = 25.7 bits (57), Expect = 5.5
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 74 DLDWDDYLETYVRGTMVYHLR 94
++D D +L+ Y +YHLR
Sbjct: 123 EIDLDTFLQKYKDKRTLYHLR 143
>gnl|CDD|220507 pfam09991, DUF2232, Predicted membrane protein (DUF2232). This
domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 290
Score = 25.6 bits (57), Expect = 5.6
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 22 LVLVPIYKKLDKALAVLQPFSSRDWYF 48
L+ PI K+L + L PF R+W
Sbjct: 178 LLAKPILKRLGVDVPKLPPF--REWKL 202
>gnl|CDD|234594 PRK00047, glpK, glycerol kinase; Provisional.
Length = 498
Score = 25.6 bits (57), Expect = 6.8
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 70 FDIRDLDWDDYL 81
F+I LDWDD L
Sbjct: 193 FNIHTLDWDDEL 204
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V).
Other tRNA synthetase sub-families are too dissimilar to
be included.
Length = 606
Score = 25.8 bits (57), Expect = 6.9
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 9/47 (19%)
Query: 73 RDLDW---------DDYLETYVRGTMVYHLRDSFEPEVRKKALARYF 110
R W D E YVRG++ + E E + L R
Sbjct: 427 RQRWWGHPIPAWYSKDTGEVYVRGSLKELVAGREEEEGIEAWLHRDA 473
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.429
Gapped
Lambda K H
0.267 0.0853 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,887,850
Number of extensions: 496324
Number of successful extensions: 490
Number of sequences better than 10.0: 1
Number of HSP's gapped: 490
Number of HSP's successfully gapped: 28
Length of query: 112
Length of database: 10,937,602
Length adjustment: 76
Effective length of query: 36
Effective length of database: 7,566,698
Effective search space: 272401128
Effective search space used: 272401128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.0 bits)