RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12187
(112 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.039
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 19/94 (20%)
Query: 13 WLETTSTITLVLVPIYKKL-DKALAVLQPFSSR----DWYFE----NGNVQTAWNRLSPA 63
W + + +V+V KL +L QP S Y E N +
Sbjct: 396 WFDVIKSDVMVVV---NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 64 DQSRFPFDIRDL---DWDDYLETYVRGTMVYHLR 94
FD DL D Y +++ +HL+
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHI----GHHLK 482
Score = 31.4 bits (70), Expect = 0.045
Identities = 11/101 (10%), Positives = 31/101 (30%), Gaps = 24/101 (23%)
Query: 29 KKLDKALAVLQPFSSRDWY-----F-ENGNVQTA-----WNRLSPADQSRFPFDIRDL-- 75
++ +L VL+P R + F + ++ T W + +D + +
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD----VMVVVNKLH 412
Query: 76 -------DWDDYLETYVRGTMVYHLRDSFEPEVRKKALARY 109
+ + + ++ E + + + Y
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Score = 27.1 bits (59), Expect = 1.5
Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 35/94 (37%)
Query: 29 KKLDKALAVLQPFSSRDWYFENGNVQTA--WNRLSPADQSRFPFDI--------RDLDWD 78
K + L VL NVQ A WN F++ R
Sbjct: 241 KPYENCLLVL------L------NVQNAKAWN----------AFNLSCKILLTTRFKQVT 278
Query: 79 DYL--ETYVRGTMVYHLRDSFEPEVRKKALARYF 110
D+L T ++ H + P+ K L +Y
Sbjct: 279 DFLSAATTTHISLD-HHSMTLTPDEVKSLLLKYL 311
Score = 26.0 bits (56), Expect = 3.3
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 48 FENGNVQTAWNRLSPADQSRFPFDIRDLDWDDYLETYVRGTM----VYHLRDSFEPEVRK 103
FE G Q + + + F + + D D ++ + + + H+ S +
Sbjct: 9 FETGEHQYQYKDILSVFEDAF---VDNFDCKD-VQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 104 KAL 106
L
Sbjct: 65 LRL 67
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain;
structural genomics, center for structural genomics of
infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium
difficile}
Length = 308
Score = 29.6 bits (67), Expect = 0.17
Identities = 11/82 (13%), Positives = 27/82 (32%), Gaps = 12/82 (14%)
Query: 31 LDKALAVLQPFSSRDWYFENGNVQTAWNRLSPADQSRF----PFDIRDLDWDDYLETYVR 86
L L+ +N ++ T+ +R S + I+ + + LE
Sbjct: 198 LIFVSHKLK--------GKNFSINTSMHRDSGTKLEQVEILSKGKIQRVKNLNVLEIEEG 249
Query: 87 GTMVYHLRDSFEPEVRKKALAR 108
G + ++ +++K
Sbjct: 250 GNLTLKQSGAWVNILKQKGFED 271
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N-
acetylglucosamine, N-acetylglucosamine-1-phosphate,
transferase; 1.90A {Candida albicans} PDB: 2yqh_A*
2yqj_A* 2yqs_A*
Length = 486
Score = 29.0 bits (64), Expect = 0.34
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 57 WNRLSPADQSRFPFDIRDLDWDDYLETYVR 86
++ L+ Q F + ++ L + V
Sbjct: 25 YDSLTIDQQQEFIDQLSTIEEPAKLISTVE 54
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 1.6
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 29 KKLDKALAVLQPFSS 43
KKL +L + S+
Sbjct: 23 KKLQASLKLYADDSA 37
>1m7s_A Catalase; beta barrel, alpha helical domain, oxidoreductase; HET:
HEM; 1.80A {Pseudomonas syringae} SCOP: e.5.1.1
Length = 484
Score = 26.3 bits (59), Expect = 2.2
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 16/61 (26%)
Query: 41 FSSRDWY--FENGN-------VQTAWNRLSPADQSRFPFDIRDL--DWDDYLETYVRGTM 89
+ D + G+ VQ L P + ++F FD D W D E + G M
Sbjct: 236 HLTNDLVGAIKKGDFPKWDLYVQV----LKPEELAKFDFDPLDATKIWPDVPEKKI-GQM 290
Query: 90 V 90
V
Sbjct: 291 V 291
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 2.2
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 61 SPADQSRFPFDIR 73
S DQSR PF R
Sbjct: 400 SGLDQSRIPFSER 412
Score = 25.4 bits (55), Expect = 4.9
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 11/62 (17%)
Query: 44 RDWYFENGNVQTAWNRLSPAD---QSRFPFDIRDLDWDDYLETYV-----RGTMVYHLRD 95
D Y + Q WNR AD + + F I D+ ++ + + +G +
Sbjct: 1633 MDLYKTSKAAQDVWNR---ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 96 SF 97
+
Sbjct: 1690 AM 1691
>2w40_A Glycerol kinase, putative; closed conformation, malaria,
transferase, sugar kinase/HSP70/actin superfamily, open
conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Length = 503
Score = 25.6 bits (57), Expect = 4.0
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 70 FDIRDLDWDDYL 81
DI L WD+ +
Sbjct: 193 MDINTLQWDEKM 204
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif,
actin- like ATPase domain, transferase; 2.30A
{Cellulomonas SP}
Length = 504
Score = 25.6 bits (57), Expect = 4.2
Identities = 3/12 (25%), Positives = 6/12 (50%)
Query: 70 FDIRDLDWDDYL 81
D+ L W + +
Sbjct: 193 MDLDTLSWREDI 204
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.80A {Thermus thermophilus}
Length = 495
Score = 25.6 bits (57), Expect = 4.5
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 70 FDIRDLDWDDYL 81
F++ L WD L
Sbjct: 190 FNLHTLAWDPEL 201
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation,
microfluidics,; 2.00A {Escherichia coli} SCOP: c.55.1.4
c.55.1.4 PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G*
1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y*
1gll_Y*
Length = 510
Score = 25.6 bits (57), Expect = 4.8
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 70 FDIRDLDWDDYL 81
F+I LDWDD +
Sbjct: 191 FNIHTLDWDDKM 202
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti
binding, phosphoprotein, transferase; 1.73A
{Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X
3h45_X 3d7e_O 1r59_O 1xup_O
Length = 506
Score = 25.2 bits (56), Expect = 5.0
Identities = 4/12 (33%), Positives = 8/12 (66%)
Query: 70 FDIRDLDWDDYL 81
++I L+WD +
Sbjct: 193 YNIHKLEWDQEI 204
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism,
nucleotide-binding, transferase, struct genomics; HET:
MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Length = 501
Score = 25.2 bits (56), Expect = 5.0
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 70 FDIRDLDWDDYL 81
F+I DL+WDD L
Sbjct: 194 FNIHDLEWDDEL 205
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
transferase; 2.33A {Sinorhizobium meliloti}
Length = 520
Score = 25.2 bits (56), Expect = 5.1
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 70 FDIRDLDWDDYL 81
++I + WDD L
Sbjct: 214 YNIAENAWDDEL 225
>2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural
genomics, medical ST genomics of pathogenic protozoa
consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium
vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A
Length = 371
Score = 25.3 bits (56), Expect = 5.2
Identities = 5/32 (15%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 67 RFPFDIRDLDWDDYLETYVRGTMVYHLRDSFE 98
F + L +++E ++ ++H + E
Sbjct: 85 LFAKGGKSLG--EFVEKAIKVADIFHDYEVIE 114
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL
metabolism, nucleotide-binding, transferase; 2.40A
{Thermococcus kodakarensis}
Length = 497
Score = 25.2 bits (56), Expect = 5.5
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 70 FDIRDLDWDDYL 81
F+I+ LDWDD L
Sbjct: 187 FNIKKLDWDDEL 198
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1;
nucleotidyltransferase, alternative splicing; HET: UD1;
1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A*
1jvg_A* 1jvd_A* 1vm8_A*
Length = 505
Score = 25.1 bits (54), Expect = 5.8
Identities = 6/30 (20%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 57 WNRLSPADQSRFPFDIRDLDWDDYLETYVR 86
WN L A Q +++ +++ + L + +
Sbjct: 22 WNELEEAQQVELYAELQAMNF-EELNFFFQ 50
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 24.8 bits (54), Expect = 7.8
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 7/42 (16%)
Query: 70 FDIRDLDWDDYLETYVRGTMVYHLRDSFEPEVRKKALARYFR 111
F+ + + + + V + + EP K A F+
Sbjct: 912 FNGYNPEKKEMI------QEVI-VEEDLEPFEASKETAEQFK 946
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.429
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,840,868
Number of extensions: 96937
Number of successful extensions: 283
Number of sequences better than 10.0: 1
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 28
Length of query: 112
Length of database: 6,701,793
Length adjustment: 76
Effective length of query: 36
Effective length of database: 4,579,797
Effective search space: 164872692
Effective search space used: 164872692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)