RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12187
         (112 letters)



>d1p80a2 e.5.1.1 (A:27-597) Catalase II {Escherichia coli, HPII
           [TaxId: 562]}
          Length = 571

 Score = 24.9 bits (54), Expect = 2.7
 Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 9/77 (11%)

Query: 41  FSSRDWY--FENGNVQT---AWNRLSPADQSRFPFDIRDL----DWDDYLETYVRGTMVY 91
           F  R+ +   E G+       +  +   D+ +F FD+ D       +      V   ++ 
Sbjct: 291 FHRRELWEAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLN 350

Query: 92  HLRDSFEPEVRKKALAR 108
              D+F  E  + A   
Sbjct: 351 RNPDNFFAENEQAAFHP 367


>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 56

 Score = 23.1 bits (50), Expect = 4.1
 Identities = 3/13 (23%), Positives = 6/13 (46%)

Query: 100 EVRKKALARYFRS 112
             R++ L +Y   
Sbjct: 12  PKRRQMLLKYMGG 24


>d1r1qa_ d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA, GRID)
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 97

 Score = 23.7 bits (51), Expect = 4.6
 Identities = 12/68 (17%), Positives = 20/68 (29%)

Query: 45  DWYFENGNVQTAWNRLSPADQSRFPFDIRDLDWDDYLETYVRGTMVYHLRDSFEPEVRKK 104
           +W+ E  +   A N L   D   F          D+  +      V H +   + +    
Sbjct: 7   EWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYF 66

Query: 105 ALARYFRS 112
                F S
Sbjct: 67  LWTEKFPS 74


>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase
          {Human (Homo sapiens), AGX1 [TaxId: 9606]}
          Length = 501

 Score = 23.4 bits (50), Expect = 8.1
 Identities = 5/36 (13%), Positives = 17/36 (47%)

Query: 51 GNVQTAWNRLSPADQSRFPFDIRDLDWDDYLETYVR 86
           ++   WN L  A Q     +++ +++++    + +
Sbjct: 16 EHLLRFWNELEEAQQVELYAELQAMNFEELNFFFQK 51


>d1izna_ e.43.1.1 (A:) Capz alpha-1 subunit {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 275

 Score = 23.2 bits (50), Expect = 8.9
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 47  YFENGNVQ 54
           Y+E+GNVQ
Sbjct: 192 YYEDGNVQ 199


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.429 

Gapped
Lambda     K      H
   0.267   0.0549    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 463,466
Number of extensions: 19756
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 12
Length of query: 112
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 41
Effective length of database: 1,432,766
Effective search space: 58743406
Effective search space used: 58743406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.3 bits)