BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12189
(131 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8IZF0|NALCN_HUMAN Sodium leak channel non-selective protein OS=Homo sapiens GN=NALCN
PE=2 SV=1
Length = 1738
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 89/125 (71%), Positives = 107/125 (85%)
Query: 1 MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60
ML LFEVLS KGW++VRD++ ++G H IYIHV++FLGCMIGLTLFVGVVIAN++ENKG
Sbjct: 1105 MLALFEVLSLKGWVEVRDVIIHRVGPIHGIYIHVFVFLGCMIGLTLFVGVVIANFNENKG 1164
Query: 61 TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINS 120
TALLTVDQRRW DLK RLKIAQPLHLPPRPD +RA++YD+TQ+ +FKR IA +VL S
Sbjct: 1165 TALLTVDQRRWEDLKSRLKIAQPLHLPPRPDNDGFRAKMYDITQHPFFKRTIALLVLAQS 1224
Query: 121 MLLIV 125
+LL V
Sbjct: 1225 VLLSV 1229
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 17/108 (15%)
Query: 2 LTLFEVLSFKGWLDVRDILKTQLGD----AHVIYIHVYIFLGCMIGLTLFVGVVIANYSE 57
+++F++L+ +GW+DV D +G IY +Y +I L+LFV V++ N
Sbjct: 545 MSMFQILTQEGWVDVMDQTLNAVGHMWAPVVAIYFILYHLFATLILLSLFVAVILDN--- 601
Query: 58 NKGTALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQN 105
L +D+ DLKK ++ Q + R RI++ N
Sbjct: 602 ------LELDE----DLKKLKQLKQSEANADTKEKLPLRLRIFEKFPN 639
>sp|Q6Q760|NALCN_RAT Sodium leak channel non-selective protein OS=Rattus norvegicus
GN=Nalcn PE=2 SV=1
Length = 1738
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 89/125 (71%), Positives = 107/125 (85%)
Query: 1 MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60
ML LFEVLS KGW++VRD++ ++G H IYIHV++FLGCMIGLTLFVGVVIAN++ENKG
Sbjct: 1105 MLALFEVLSLKGWVEVRDVIIHRVGPIHGIYIHVFVFLGCMIGLTLFVGVVIANFNENKG 1164
Query: 61 TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINS 120
TALLTVDQRRW DLK RLKIAQPLHLPPRPD +RA++YD+TQ+ +FKR IA +VL S
Sbjct: 1165 TALLTVDQRRWEDLKSRLKIAQPLHLPPRPDNDGFRAKMYDITQHPFFKRTIALLVLAQS 1224
Query: 121 MLLIV 125
+LL V
Sbjct: 1225 VLLSV 1229
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 17/108 (15%)
Query: 2 LTLFEVLSFKGWLDVRDILKTQLGDAH----VIYIHVYIFLGCMIGLTLFVGVVIANYSE 57
+++F++L+ +GW+DV D +G IY +Y +I L+LFV V++ N
Sbjct: 545 MSMFQILTQEGWVDVMDQTLNAVGHMWAPLVAIYFILYHLFATLILLSLFVAVILDN--- 601
Query: 58 NKGTALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQN 105
L +D+ DLKK ++ Q + R RI++ N
Sbjct: 602 ------LELDE----DLKKLKQLKQSEANADTKEKLPLRLRIFEKFPN 639
>sp|Q8BXR5|NALCN_MOUSE Sodium leak channel non-selective protein OS=Mus musculus GN=Nalcn
PE=1 SV=2
Length = 1738
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 89/125 (71%), Positives = 107/125 (85%)
Query: 1 MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60
ML LFEVLS KGW++VRD++ ++G H IYIHV++FLGCMIGLTLFVGVVIAN++ENKG
Sbjct: 1105 MLALFEVLSLKGWVEVRDVIIHRVGPIHGIYIHVFVFLGCMIGLTLFVGVVIANFNENKG 1164
Query: 61 TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINS 120
TALLTVDQRRW DLK RLKIAQPLHLPPRPD +RA++YD+TQ+ +FKR IA +VL S
Sbjct: 1165 TALLTVDQRRWEDLKSRLKIAQPLHLPPRPDNDGFRAKMYDITQHPFFKRTIALLVLAQS 1224
Query: 121 MLLIV 125
+LL V
Sbjct: 1225 VLLSV 1229
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 17/108 (15%)
Query: 2 LTLFEVLSFKGWLDVRDILKTQLGDAH----VIYIHVYIFLGCMIGLTLFVGVVIANYSE 57
+++F++L+ +GW+DV D +G IY +Y +I L+LFV V++ N
Sbjct: 545 MSMFQILTQEGWVDVMDQTLNAVGHMWAPLVAIYFILYHLFATLILLSLFVAVILDN--- 601
Query: 58 NKGTALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQN 105
L +D+ DLKK ++ Q + R RI++ N
Sbjct: 602 ------LELDE----DLKKLKQLKQSEANADTKEKLPLRLRIFEKFPN 639
>sp|O14234|CCH1_SCHPO Calcium-channel protein cch1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=cch1 PE=3 SV=1
Length = 1854
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 74/140 (52%), Gaps = 11/140 (7%)
Query: 1 MLTLFEVLSFKGWLDV-RDIL---------KTQLGDAHVIYIHVYIFLGCMIGLTLFVGV 50
+L LFE+ S +GW+D+ R ++ +T + ++ ++ + + LTLF+ +
Sbjct: 1152 LLALFEIASIEGWVDIMRSVMDITGFNNQPQTNASSGNAMFFVLFNLVSMIYILTLFIAI 1211
Query: 51 VIANYSENKGTALLTVDQRRWCDLKKRLKIAQPLHLPP-RPDAFKYRARIYDVTQNLWFK 109
+I+NY+E G+A T +QR W +L++++K +P P RP + + V ++ ++
Sbjct: 1212 IISNYAERTGSAFFTAEQRAWLELRRKIKSMRPSKRPAIRPLGLRGLCYDFAVQKHGIWR 1271
Query: 110 RLIAAVVLINSMLLIVSLAP 129
R + +++ + L+ P
Sbjct: 1272 RTFTGLYIVHLLFLLTIFYP 1291
>sp|Q6QIY3|SCNAA_MOUSE Sodium channel protein type 10 subunit alpha OS=Mus musculus
GN=Scn10a PE=1 SV=2
Length = 1958
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 18/141 (12%)
Query: 2 LTLFEVLSFKGWLDV-------RDILKTQLGDAHVIYIHVY----IFLGCMIGLTLFVGV 50
L L +V +FKGW+D+ RDI +Q +Y+++Y I G L LFVGV
Sbjct: 1359 LALLQVATFKGWMDIMYAAVDSRDI-NSQPNWEESLYMYLYFVVFIIFGGFFTLNLFVGV 1417
Query: 51 VIANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQN 105
+I N+++ K +T +Q+++ + K+L +P PRP KY+ ++D+
Sbjct: 1418 IIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRP-LNKYQGFVFDIVTR 1476
Query: 106 LWFKRLIAAVVLINSMLLIVS 126
F +I A++ +N + ++V
Sbjct: 1477 QAFDIIIMALICLNMITMMVE 1497
>sp|Q28644|SCN9A_RABIT Sodium channel protein type 9 subunit alpha OS=Oryctolagus cuniculus
GN=SCN9A PE=2 SV=1
Length = 1984
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 16/140 (11%)
Query: 2 LTLFEVLSFKGWLDVRDI------LKTQLGDAHVIYIHVY----IFLGCMIGLTLFVGVV 51
L+L +V +FKGW+D+ + Q H +Y+++Y I G L LF+GV+
Sbjct: 1394 LSLLQVATFKGWMDIMYAAVDSVNVDQQPSYEHNLYMYIYFVIFIIFGSFFTLNLFIGVI 1453
Query: 52 IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N+++ K +T +Q+++ + K+L +P PRP K++ I+D+ N
Sbjct: 1454 IDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGN-KFQGCIFDLVTNQ 1512
Query: 107 WFKRLIAAVVLINSMLLIVS 126
F I ++ +N + ++V
Sbjct: 1513 AFDITIMILICLNMVTMMVE 1532
>sp|O08562|SCN9A_RAT Sodium channel protein type 9 subunit alpha OS=Rattus norvegicus
GN=Scn9a PE=1 SV=1
Length = 1984
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 16/140 (11%)
Query: 2 LTLFEVLSFKGWLD----------VRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVV 51
L+L +V +FKGW+D V + K + IY ++I G L LF+GV+
Sbjct: 1395 LSLLQVATFKGWMDIMYAAVDSVNVNEQPKYEYSLYMYIYFVIFIIFGSFFTLNLFIGVI 1454
Query: 52 IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N+++ K +T +Q+++ + K+L +P PRP K++ I+D+ N
Sbjct: 1455 IDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGN-KFQGCIFDLVTNQ 1513
Query: 107 WFKRLIAAVVLINSMLLIVS 126
F I ++ +N + ++V
Sbjct: 1514 AFDITIMVLICLNMVTMMVE 1533
>sp|P35500|SCNA_DROME Sodium channel protein para OS=Drosophila melanogaster GN=para PE=2
SV=3
Length = 2131
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 71/134 (52%), Gaps = 17/134 (12%)
Query: 2 LTLFEVLSFKGWL-------DVRDILKTQLGDAHV---IYIHVYIFLGCMIGLTLFVGVV 51
L LF+V +FKGW+ D R++ K + + ++ +Y +I G L LF+GV+
Sbjct: 1500 LCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVI 1559
Query: 52 IANYSENKGTA------LLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQN 105
I N++E K A +T DQ+++ + K++ +PL PRP ++ +A ++++ +
Sbjct: 1560 IDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRP-RWRPQAIVFEIVTD 1618
Query: 106 LWFKRLIAAVVLIN 119
F +I + +N
Sbjct: 1619 KKFDIIIMLFIGLN 1632
>sp|O46669|SCNAA_CANFA Sodium channel protein type 10 subunit alpha OS=Canis familiaris
GN=SCN10A PE=2 SV=1
Length = 1962
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 74/140 (52%), Gaps = 16/140 (11%)
Query: 2 LTLFEVLSFKGWLDV-------RDI-LKTQLGDAHVIYIH--VYIFLGCMIGLTLFVGVV 51
L L +V +FKGW+D+ RD+ L+ + D +Y++ ++I G L LFVGV+
Sbjct: 1365 LALLQVATFKGWMDIMYAAVDARDVNLQPKWEDNVYMYLYFVIFIIFGGFFTLNLFVGVI 1424
Query: 52 IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N+++ K +T +Q+++ + K+L +P PRP KY+ ++D+
Sbjct: 1425 IDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRP-LNKYQGFVFDIVTKQ 1483
Query: 107 WFKRLIAAVVLINSMLLIVS 126
F +I ++ +N + ++V
Sbjct: 1484 AFDIVIMVLICLNMITMMVE 1503
>sp|P04775|SCN2A_RAT Sodium channel protein type 2 subunit alpha OS=Rattus norvegicus
GN=Scn2a PE=1 SV=1
Length = 2005
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 74/139 (53%), Gaps = 16/139 (11%)
Query: 2 LTLFEVLSFKGWLDV-------RDI-LKTQLGDAHVIYIH--VYIFLGCMIGLTLFVGVV 51
L+L +V +FKGW+D+ R++ L+ + D +Y++ ++I G L LF+GV+
Sbjct: 1413 LSLLQVATFKGWMDIMYAAVDSRNVELQPKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVI 1472
Query: 52 IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N+++ K +T +Q+++ + K+L +P PRP A K++ ++D
Sbjct: 1473 IDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRP-ANKFQGMVFDFVTKQ 1531
Query: 107 WFKRLIAAVVLINSMLLIV 125
F I ++ +N + ++V
Sbjct: 1532 VFDISIMILICLNMVTMMV 1550
Score = 32.3 bits (72), Expect = 0.93, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 32/68 (47%)
Query: 2 LTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKGT 61
L+LF +++ W ++ + G ++I+ + IFLG + L + VV Y E
Sbjct: 375 LSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILAVVAMAYEEQNQA 434
Query: 62 ALLTVDQR 69
L +Q+
Sbjct: 435 TLEEAEQK 442
>sp|Q99250|SCN2A_HUMAN Sodium channel protein type 2 subunit alpha OS=Homo sapiens GN=SCN2A
PE=1 SV=3
Length = 2005
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 74/139 (53%), Gaps = 16/139 (11%)
Query: 2 LTLFEVLSFKGWLDV-------RDI-LKTQLGDAHVIYIH--VYIFLGCMIGLTLFVGVV 51
L+L +V +FKGW+D+ R++ L+ + D +Y++ ++I G L LF+GV+
Sbjct: 1413 LSLLQVATFKGWMDIMYAAVDSRNVELQPKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVI 1472
Query: 52 IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N+++ K +T +Q+++ + K+L +P PRP A K++ ++D
Sbjct: 1473 IDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRP-ANKFQGMVFDFVTKQ 1531
Query: 107 WFKRLIAAVVLINSMLLIV 125
F I ++ +N + ++V
Sbjct: 1532 VFDISIMILICLNMVTMMV 1550
Score = 32.3 bits (72), Expect = 0.94, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 32/68 (47%)
Query: 2 LTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKGT 61
L+LF +++ W ++ + G ++I+ + IFLG + L + VV Y E
Sbjct: 375 LSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILAVVAMAYEEQNQA 434
Query: 62 ALLTVDQR 69
L +Q+
Sbjct: 435 TLEEAEQK 442
>sp|Q2XVR6|SC4AB_TAKRU Sodium channel protein type 4 subunit alpha B OS=Takifugu rubripes
GN=scn4ab PE=3 SV=1
Length = 1719
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 71/140 (50%), Gaps = 16/140 (11%)
Query: 2 LTLFEVLSFKGWLDV-------RDILKTQLGDAHV---IYIHVYIFLGCMIGLTLFVGVV 51
L+L +V +FKGW D+ RD+ + + ++ +Y ++I G L LF+GV+
Sbjct: 1124 LSLLQVATFKGWTDIMYAAVDSRDVESQPIYEVNLYMYLYFVIFIIFGSFFTLNLFIGVI 1183
Query: 52 IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N+++ K +T +Q+++ + K+L +P PRP+ ++ ++D+
Sbjct: 1184 IDNFNQQKAKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPVPRPEN-PFQGLVFDLVTKQ 1242
Query: 107 WFKRLIAAVVLINSMLLIVS 126
F I ++ +N + ++V
Sbjct: 1243 IFDVFIMVLICLNMVTMMVE 1262
>sp|Q62205|SCN9A_MOUSE Sodium channel protein type 9 subunit alpha OS=Mus musculus GN=Scn9a
PE=1 SV=2
Length = 1984
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 22/143 (15%)
Query: 2 LTLFEVLSFKGWLDVRDILKTQLGDAHV-------------IYIHVYIFLGCMIGLTLFV 48
L+L +V +FKGW+D I+ + +V IY ++I G L LF+
Sbjct: 1395 LSLLQVATFKGWMD---IMYAAVDSVNVNAQPIYEYNLYMYIYFVIFIIFGSFFTLNLFI 1451
Query: 49 GVVIANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVT 103
GV+I N+++ K +T +Q+++ + K+L +P PRP K++ I+D+
Sbjct: 1452 GVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGN-KFQGCIFDLV 1510
Query: 104 QNLWFKRLIAAVVLINSMLLIVS 126
N F I ++ +N + ++V
Sbjct: 1511 TNQAFDITIMVLICLNMVTMMVE 1533
>sp|Q2XVR4|SC4AB_TETNG Sodium channel protein type 4 subunit alpha B OS=Tetraodon
nigroviridis GN=scn4ab PE=3 SV=1
Length = 1715
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 70/140 (50%), Gaps = 16/140 (11%)
Query: 2 LTLFEVLSFKGWL-------DVRDILKTQLGDAHV---IYIHVYIFLGCMIGLTLFVGVV 51
L+L +V +FKGW+ D RD+ + + ++ +Y ++I G L LF+GV+
Sbjct: 1120 LSLLQVATFKGWMEIMYAAVDSRDVESQPIYEVNIYMYLYFVIFIIFGSFFTLNLFIGVI 1179
Query: 52 IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N+++ K +T +Q+++ + K+L +P PRP+ + ++D+
Sbjct: 1180 IDNFNQQKAKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPVPRPEN-ALQGLVFDLVTKQ 1238
Query: 107 WFKRLIAAVVLINSMLLIVS 126
F I ++ +N + ++V
Sbjct: 1239 IFDVFIMVLICLNMVTMMVE 1258
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 31/69 (44%)
Query: 2 LTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKGT 61
L LF +++ W ++ + G ++I+ V IFLG + L + VV Y+E
Sbjct: 374 LALFRLMTQDFWENLFQLTLRAAGKTYMIFFVVVIFLGSFYLINLILAVVAMAYAEQNQA 433
Query: 62 ALLTVDQRR 70
+ Q+
Sbjct: 434 TMAEAKQKE 442
>sp|Q62968|SCNAA_RAT Sodium channel protein type 10 subunit alpha OS=Rattus norvegicus
GN=Scn10a PE=1 SV=1
Length = 1956
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 71/140 (50%), Gaps = 16/140 (11%)
Query: 2 LTLFEVLSFKGWLDV------RDILKTQLGDAHVIYIHVY----IFLGCMIGLTLFVGVV 51
L L +V +FKGW+D+ + +Q + +Y+++Y I G L LFVGV+
Sbjct: 1359 LALLQVATFKGWMDIMYAAVDSGEINSQPNWENNLYMYLYFVVFIIFGGFFTLNLFVGVI 1418
Query: 52 IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N+++ K +T +Q+++ + K+L +P PRP KY+ ++D+
Sbjct: 1419 IDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRP-LNKYQGFVFDIVTRQ 1477
Query: 107 WFKRLIAAVVLINSMLLIVS 126
F +I ++ +N + ++V
Sbjct: 1478 AFDIIIMVLICLNMITMMVE 1497
>sp|P08104|SCN3A_RAT Sodium channel protein type 3 subunit alpha OS=Rattus norvegicus
GN=Scn3a PE=1 SV=1
Length = 1951
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 71/140 (50%), Gaps = 16/140 (11%)
Query: 2 LTLFEVLSFKGWLDV-------RDILKTQLGDAHV---IYIHVYIFLGCMIGLTLFVGVV 51
L L +V +FKGW+D+ RD+ + + ++ +Y ++I G L LF+GV+
Sbjct: 1359 LALLQVATFKGWMDIMYAAVDSRDVKLQPIYEENLYMYLYFVIFIIFGSFFTLNLFIGVI 1418
Query: 52 IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N+++ K +T +Q+++ + K+L +P PRP A K++ ++D
Sbjct: 1419 IDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRP-ANKFQGMVFDFVTRQ 1477
Query: 107 WFKRLIAAVVLINSMLLIVS 126
F I ++ +N + ++V
Sbjct: 1478 VFDISIMILICLNMVTMMVE 1497
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 2 LTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKGT 61
L+LF +++ W ++ + G ++I+ + IFLG + L + VV Y E
Sbjct: 374 LSLFRLMTQDYWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLVNLILAVVAMAYEEQNQA 433
Query: 62 ALLTVDQRR 70
L +Q+
Sbjct: 434 TLEEAEQKE 442
>sp|Q9NY46|SCN3A_HUMAN Sodium channel protein type 3 subunit alpha OS=Homo sapiens GN=SCN3A
PE=1 SV=2
Length = 2000
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 71/140 (50%), Gaps = 16/140 (11%)
Query: 2 LTLFEVLSFKGWLDV-------RDILKTQLGDAHV---IYIHVYIFLGCMIGLTLFVGVV 51
L L +V +FKGW+D+ RD+ + + ++ +Y ++I G L LF+GV+
Sbjct: 1408 LALLQVATFKGWMDIMYAAVDSRDVKLQPVYEENLYMYLYFVIFIIFGSFFTLNLFIGVI 1467
Query: 52 IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N+++ K +T +Q+++ + K+L +P PRP A K++ ++D
Sbjct: 1468 IDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRP-ANKFQGMVFDFVTRQ 1526
Query: 107 WFKRLIAAVVLINSMLLIVS 126
F I ++ +N + ++V
Sbjct: 1527 VFDISIMILICLNMVTMMVE 1546
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 2 LTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKGT 61
L+LF +++ W ++ + G ++I+ + IFLG + L + VV Y E
Sbjct: 374 LSLFRLMTQDYWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLVNLILAVVAMAYEEQNQA 433
Query: 62 ALLTVDQRR 70
L +Q+
Sbjct: 434 TLEEAEQKE 442
>sp|Q9JJV9|SCN5A_MOUSE Sodium channel protein type 5 subunit alpha OS=Mus musculus GN=Scn5a
PE=1 SV=2
Length = 2019
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 16/140 (11%)
Query: 2 LTLFEVLSFKGWLDVRDIL--------KTQLGDAHVIYIH--VYIFLGCMIGLTLFVGVV 51
L L +V +FKGW+D+ + Q D +YI+ V+I G L LF+GV+
Sbjct: 1412 LALLQVATFKGWMDIMYAAVDSRGYEEQPQWEDNLYMYIYFVVFIIFGSFFTLNLFIGVI 1471
Query: 52 IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N+++ K +T +Q+++ + K+L +P PRP KY+ I+D+
Sbjct: 1472 IDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRP-LNKYQGFIFDIVTKQ 1530
Query: 107 WFKRLIAAVVLINSMLLIVS 126
F I ++ +N + ++V
Sbjct: 1531 AFDVTIMFLICLNMVTMMVE 1550
>sp|Q20JQ7|SC4AB_DANRE Sodium channel protein type 4 subunit alpha B OS=Danio rerio
GN=scn4ab PE=2 SV=1
Length = 1784
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 72/140 (51%), Gaps = 16/140 (11%)
Query: 2 LTLFEVLSFKGWLDV-------RDILKTQLGDAHV---IYIHVYIFLGCMIGLTLFVGVV 51
L L +V +FKGW+D+ R I + +A++ IY ++I G L LF+GV+
Sbjct: 1178 LALLQVATFKGWMDIMYSAVDSRAIESQPVYEANLYMYIYFVIFIIFGSFFTLNLFIGVI 1237
Query: 52 IANYSENK----GTAL-LTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N+++ K GT + +T +Q+++ + K+L +P PRP + ++D
Sbjct: 1238 IDNFNQQKAKLGGTDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPTNC-CQGLVFDFVTQQ 1296
Query: 107 WFKRLIAAVVLINSMLLIVS 126
+F I ++ +N + ++V
Sbjct: 1297 FFDIFIMVMICLNMVTMMVE 1316
>sp|P15389|SCN5A_RAT Sodium channel protein type 5 subunit alpha OS=Rattus norvegicus
GN=Scn5a PE=2 SV=1
Length = 2019
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 16/140 (11%)
Query: 2 LTLFEVLSFKGWLDVRDIL--------KTQLGDAHVIYIH--VYIFLGCMIGLTLFVGVV 51
L L +V +FKGW+D+ + Q D +YI+ V+I G L LF+GV+
Sbjct: 1412 LALLQVATFKGWMDIMYAAVDSRGYEEQPQWEDNLYMYIYFVVFIIFGSFFTLNLFIGVI 1471
Query: 52 IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N+++ K +T +Q+++ + K+L +P PRP KY+ I+D+
Sbjct: 1472 IDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRP-LNKYQGFIFDIVTKQ 1530
Query: 107 WFKRLIAAVVLINSMLLIVS 126
F I ++ +N + ++V
Sbjct: 1531 AFDVTIMFLICLNMVTMMVE 1550
>sp|P35498|SCN1A_HUMAN Sodium channel protein type 1 subunit alpha OS=Homo sapiens GN=SCN1A
PE=1 SV=2
Length = 2009
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 74/140 (52%), Gaps = 16/140 (11%)
Query: 2 LTLFEVLSFKGWLDV-------RDI-LKTQLGDAHVIYIH--VYIFLGCMIGLTLFVGVV 51
L+L +V +FKGW+D+ R++ L+ + ++ +Y++ ++I G L LF+GV+
Sbjct: 1423 LSLLQVATFKGWMDIMYAAVDSRNVELQPKYEESLYMYLYFVIFIIFGSFFTLNLFIGVI 1482
Query: 52 IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N+++ K +T +Q+++ + K+L +P PRP K++ ++D
Sbjct: 1483 IDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGN-KFQGMVFDFVTRQ 1541
Query: 107 WFKRLIAAVVLINSMLLIVS 126
F I ++ +N + ++V
Sbjct: 1542 VFDISIMILICLNMVTMMVE 1561
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 2 LTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKGT 61
L+LF +++ W ++ + G ++I+ + IFLG + L + VV Y E
Sbjct: 373 LSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILAVVAMAYEEQNQA 432
Query: 62 ALLTVDQRR 70
L +Q+
Sbjct: 433 TLEEAEQKE 441
>sp|P04774|SCN1A_RAT Sodium channel protein type 1 subunit alpha OS=Rattus norvegicus
GN=Scn1a PE=2 SV=1
Length = 2009
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 74/140 (52%), Gaps = 16/140 (11%)
Query: 2 LTLFEVLSFKGWLDV-------RDI-LKTQLGDAHVIYIH--VYIFLGCMIGLTLFVGVV 51
L+L +V +FKGW+D+ R++ L+ + ++ +Y++ ++I G L LF+GV+
Sbjct: 1423 LSLLQVATFKGWMDIMYAAVDSRNVELQPKYEESLYMYLYFVIFIIFGSFFTLNLFIGVI 1482
Query: 52 IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N+++ K +T +Q+++ + K+L +P PRP K++ ++D
Sbjct: 1483 IDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRP-GNKFQGMVFDFVTRQ 1541
Query: 107 WFKRLIAAVVLINSMLLIVS 126
F I ++ +N + ++V
Sbjct: 1542 VFDISIMILICLNMVTMMVE 1561
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 2 LTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKGT 61
L+LF +++ W ++ + G ++I+ + IFLG + L + VV Y E
Sbjct: 373 LSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILAVVAMAYEEQNQA 432
Query: 62 ALLTVDQRR 70
L +Q+
Sbjct: 433 TLEEAEQKE 441
>sp|Q9ER60|SCN4A_MOUSE Sodium channel protein type 4 subunit alpha OS=Mus musculus GN=Scn4a
PE=2 SV=1
Length = 1841
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 16/140 (11%)
Query: 2 LTLFEVLSFKGWLD-----VRDILKTQLGDAHV-----IYIHVYIFLGCMIGLTLFVGVV 51
L+L +V +FKGW+D V K + D V +Y ++I G L LF+GV+
Sbjct: 1229 LSLLQVATFKGWMDIMYAAVDSREKEEQPDYEVNLYMYLYFVIFIIFGSFFTLNLFIGVI 1288
Query: 52 IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N+++ K +T +Q+++ + K+L +P PRP K + +YD
Sbjct: 1289 IDNFNQQKKKFGGKDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPQN-KIQGMVYDFVTKQ 1347
Query: 107 WFKRLIAAVVLINSMLLIVS 126
F I ++ +N + ++V
Sbjct: 1348 VFDISIMILICLNMVTMMVE 1367
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 2 LTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKGT 61
L LF +++ W ++ + G ++I+ V IFLG + L + VV Y+E +
Sbjct: 391 LALFRLMTQDYWENLFQLTLRAAGKTYMIFFVVIIFLGSFYLINLILAVVAMAYAE-QNE 449
Query: 62 ALLTVDQRRWCDLKKRLK 79
A L DQ + + ++ L+
Sbjct: 450 ATLAEDQEKEEEFQQMLE 467
>sp|Q9Y5Y9|SCNAA_HUMAN Sodium channel protein type 10 subunit alpha OS=Homo sapiens
GN=SCN10A PE=1 SV=2
Length = 1956
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 73/140 (52%), Gaps = 16/140 (11%)
Query: 2 LTLFEVLSFKGWLDV-------RDI-LKTQLGDAHVIYIH--VYIFLGCMIGLTLFVGVV 51
L L +V +FKGW+D+ R++ ++ + D +Y++ ++I G L LFVGV+
Sbjct: 1358 LALLQVATFKGWMDIMYAAVDSREVNMQPKWEDNVYMYLYFVIFIIFGGFFTLNLFVGVI 1417
Query: 52 IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N+++ K +T +Q+++ + K+L +P PRP K++ ++D+
Sbjct: 1418 IDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRP-LNKFQGFVFDIVTRQ 1476
Query: 107 WFKRLIAAVVLINSMLLIVS 126
F I ++ +N + ++V
Sbjct: 1477 AFDITIMVLICLNMITMMVE 1496
>sp|Q14524|SCN5A_HUMAN Sodium channel protein type 5 subunit alpha OS=Homo sapiens GN=SCN5A
PE=1 SV=2
Length = 2016
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 16/140 (11%)
Query: 2 LTLFEVLSFKGWLDVRDILKTQLGDAH----------VIYIHVYIFLGCMIGLTLFVGVV 51
L L +V +FKGW+D+ G IY ++I G L LF+GV+
Sbjct: 1410 LALLQVATFKGWMDIMYAAVDSRGYEEQPQWEYNLYMYIYFVIFIIFGSFFTLNLFIGVI 1469
Query: 52 IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N+++ K +T +Q+++ + K+L +P PRP KY+ I+D+
Sbjct: 1470 IDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRP-LNKYQGFIFDIVTKQ 1528
Query: 107 WFKRLIAAVVLINSMLLIVS 126
F I ++ +N + ++V
Sbjct: 1529 AFDVTIMFLICLNMVTMMVE 1548
>sp|Q2XVR7|SC4AA_TAKRU Sodium channel protein type 4 subunit alpha A OS=Takifugu rubripes
GN=scn4aa PE=3 SV=1
Length = 1892
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 71/140 (50%), Gaps = 16/140 (11%)
Query: 2 LTLFEVLSFKGWLDV-------RDILKTQLGDAHV---IYIHVYIFLGCMIGLTLFVGVV 51
L+L ++ +FKGW+D+ R++ + + ++ IY ++I G L LF+GV+
Sbjct: 1275 LSLLQIATFKGWMDIMYPAVDSREVEEQPSYEINLYMYIYFVIFIIFGSFFTLNLFIGVI 1334
Query: 52 IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N+++ K +T +Q+++ + K+L +P PRP A + ++D
Sbjct: 1335 IDNFNQQKKKLGDKDIFMTEEQKKYYEAMKKLGSKKPQKPIPRP-ANLIQGLVFDFISQQ 1393
Query: 107 WFKRLIAAVVLINSMLLIVS 126
+F I ++ +N + ++V
Sbjct: 1394 FFDIFIMVLICLNMVTMMVE 1413
>sp|P02719|SCNA_ELEEL Sodium channel protein OS=Electrophorus electricus PE=2 SV=1
Length = 1820
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 16/140 (11%)
Query: 2 LTLFEVLSFKGWLDV--RDILKTQLGDAHVIYIHVYIFL--------GCMIGLTLFVGVV 51
L+L +V +FKGW+D+ + ++ D + I+VY++L G L LF+GV+
Sbjct: 1204 LSLLQVSTFKGWMDIMYAAVDSREVEDQPIYEINVYMYLYFVIFIVFGAFFTLNLFIGVI 1263
Query: 52 IANYSENK----GTAL-LTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N++ K G L +T +Q+++ + K+L + PRP + +YD+
Sbjct: 1264 IDNFNRQKQKLGGEDLFMTEEQKKYYNAMKKLGSKKAAKCIPRPSNV-VQGVVYDIVTQP 1322
Query: 107 WFKRLIAAVVLINSMLLIVS 126
+ I A++ IN + ++V
Sbjct: 1323 FTDIFIMALICINMVAMMVE 1342
>sp|P35499|SCN4A_HUMAN Sodium channel protein type 4 subunit alpha OS=Homo sapiens GN=SCN4A
PE=1 SV=4
Length = 1836
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 68/140 (48%), Gaps = 16/140 (11%)
Query: 2 LTLFEVLSFKGWLDV----------RDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVV 51
L+L +V +FKGW+D+ + + ++ +Y ++I G L LF+GV+
Sbjct: 1235 LSLLQVATFKGWMDIMYAAVDSREKEEQPQYEVNLYMYLYFVIFIIFGSFFTLNLFIGVI 1294
Query: 52 IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N+++ K +T +Q+++ + K+L +P PRP K + +YD+
Sbjct: 1295 IDNFNQQKKKLGGKDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPQN-KIQGMVYDLVTKQ 1353
Query: 107 WFKRLIAAVVLINSMLLIVS 126
F I ++ +N + ++V
Sbjct: 1354 AFDITIMILICLNMVTMMVE 1373
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 2 LTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKGT 61
L LF +++ W ++ + G ++I+ V IFLG + L + VV Y+E +
Sbjct: 397 LALFRLMTQDYWENLFQLTLRAAGKTYMIFFVVIIFLGSFYLINLILAVVAMAYAE-QNE 455
Query: 62 ALLTVDQRRWCDLKKRLK 79
A L D+ + + ++ L+
Sbjct: 456 ATLAEDKEKEEEFQQMLE 473
>sp|Q15858|SCN9A_HUMAN Sodium channel protein type 9 subunit alpha OS=Homo sapiens GN=SCN9A
PE=1 SV=3
Length = 1988
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 16/140 (11%)
Query: 2 LTLFEVLSFKGW----------LDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVV 51
L+L +V +FKGW ++V K + IY V+I G L LF+GV+
Sbjct: 1397 LSLLQVATFKGWTIIMYAAVDSVNVDKQPKYEYSLYMYIYFVVFIIFGSFFTLNLFIGVI 1456
Query: 52 IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N+++ K +T +Q+++ + K+L +P PRP K + I+D+ N
Sbjct: 1457 IDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGN-KIQGCIFDLVTNQ 1515
Query: 107 WFKRLIAAVVLINSMLLIVS 126
F I ++ +N + ++V
Sbjct: 1516 AFDISIMVLICLNMVTMMVE 1535
>sp|Q9R053|SCNBA_MOUSE Sodium channel protein type 11 subunit alpha OS=Mus musculus
GN=Scn11a PE=1 SV=2
Length = 1765
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 72/140 (51%), Gaps = 16/140 (11%)
Query: 2 LTLFEVLSFKGWLDVRDILKTQLG-------DAHV---IYIHVYIFLGCMIGLTLFVGVV 51
L L +V ++KGWLD+ + G +A++ +Y V+I G L LF+GV+
Sbjct: 1229 LALLQVATYKGWLDIMNAAVDSRGKDEQPAFEANLYAYLYFVVFIIFGSFFTLNLFIGVI 1288
Query: 52 IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N+++ + +T +Q+++ + K+L +P PRP K +A ++D+ +
Sbjct: 1289 IDNFNQQQKKLGGQDIFMTEEQKKYYNAMKKLGTKKPQKPIPRP-LNKCQAFVFDLVTSQ 1347
Query: 107 WFKRLIAAVVLINSMLLIVS 126
F +I +++ N ++++
Sbjct: 1348 VFDVIILGLIVTNMIIMMAE 1367
>sp|O88457|SCNBA_RAT Sodium channel protein type 11 subunit alpha OS=Rattus norvegicus
GN=Scn11a PE=1 SV=1
Length = 1765
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 72/142 (50%), Gaps = 16/142 (11%)
Query: 2 LTLFEVLSFKGWLDVRDIL-----KTQLGDAHV-----IYIHVYIFLGCMIGLTLFVGVV 51
L L +V ++KGWL++ + K + D +Y V+I G L LF+GV+
Sbjct: 1228 LALLQVATYKGWLEIMNAAVDSREKDEQPDFEANLYAYLYFVVFIIFGSFFTLNLFIGVI 1287
Query: 52 IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N+++ + +T +Q+++ + K+L +P PRP K +A ++D+ +
Sbjct: 1288 IDNFNQQQKKLGGQDIFMTEEQKKYYNAMKKLGTKKPQKPIPRP-LNKCQAFVFDLVTSQ 1346
Query: 107 WFKRLIAAVVLINSMLLIVSLA 128
F +I ++++N ++++ A
Sbjct: 1347 VFDVIILGLIVLNMIIMMAESA 1368
>sp|P50077|CCH1_YEAST Calcium-channel protein CCH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CCH1 PE=1 SV=1
Length = 2039
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 72/135 (53%), Gaps = 13/135 (9%)
Query: 3 TLFEVLSFKGWLDVRDIL---------KTQLGDA-HVIYIHVYIFLGCMIGLTLFVGVVI 52
+L++++S +GW+D+ + + T +G A + +++ ++ FL + L LFV ++
Sbjct: 1414 SLYQIISLEGWVDLLENMMNSSGIGTPATVMGSAGNALFLVLFNFLSMVFILNLFVSFIV 1473
Query: 53 ANYSENKGTALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVT---QNLWFK 109
N + G+A T++++ W + +K L A+P +P + + R Y + +N ++
Sbjct: 1474 NNQARTTGSAYFTIEEKAWLESQKLLSQAKPKAIPNLIELSRVRQFFYQLAVEKKNFYYA 1533
Query: 110 RLIAAVVLINSMLLI 124
+ V+ ++ ++L+
Sbjct: 1534 SFLQVVLYLHIIMLL 1548
>sp|Q2XVR5|SC4AA_TETNG Sodium channel protein type 4 subunit alpha A OS=Tetraodon
nigroviridis GN=scn4aa PE=3 SV=2
Length = 1863
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 69/140 (49%), Gaps = 16/140 (11%)
Query: 2 LTLFEVLSFKGW-------LDVRDILKTQLGDAHV---IYIHVYIFLGCMIGLTLFVGVV 51
L+L ++ +FKGW +D R++ + + ++ IY ++I G L LF+GV+
Sbjct: 1255 LSLLQIATFKGWTAIMYAAVDSREVEEQPSYEINLYMYIYFVIFIIFGAFFTLNLFIGVI 1314
Query: 52 IANYSENK-----GTALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N+++ K +T +Q+++ + K+L +P PRP + ++D
Sbjct: 1315 IDNFNQQKRKLGDKDIFMTEEQKKYYEAMKKLGSKKPQKPIPRPTNL-IQGMVFDFISQQ 1373
Query: 107 WFKRLIAAVVLINSMLLIVS 126
+F I ++ +N + ++V
Sbjct: 1374 FFDIFIMVLICLNMVTMMVE 1393
>sp|P15390|SCN4A_RAT Sodium channel protein type 4 subunit alpha OS=Rattus norvegicus
GN=Scn4a PE=2 SV=1
Length = 1840
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 69/140 (49%), Gaps = 16/140 (11%)
Query: 2 LTLFEVLSFKGWLDV-------RDILKTQLGDAHV---IYIHVYIFLGCMIGLTLFVGVV 51
L+L +V +FKGW+D+ R+ + + ++ +Y ++I G L LF+GV+
Sbjct: 1228 LSLLQVATFKGWMDIMYAAVDSREKEEQPHYEVNLYMYLYFVIFIIFGSFFTLNLFIGVI 1287
Query: 52 IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N+++ K +T +Q+++ + K+L +P PRP K + +YD
Sbjct: 1288 IDNFNQQKKKFGGKDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPQN-KIQGMVYDFVTKQ 1346
Query: 107 WFKRLIAAVVLINSMLLIVS 126
F I ++ +N + ++V
Sbjct: 1347 VFDISIMILICLNMVTMMVE 1366
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 2 LTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKGT 61
L LF +++ W ++ + G ++I+ V IFLG + L + VV Y+E +
Sbjct: 391 LALFRLMTQDYWENLFQLTLRAAGKTYMIFFVVIIFLGSFYLINLILAVVAMAYAE-QNE 449
Query: 62 ALLTVDQRRWCDLKKRLK 79
A L DQ + + ++ L+
Sbjct: 450 ATLAEDQEKEEEFQQMLE 467
>sp|O88420|SCN8A_RAT Sodium channel protein type 8 subunit alpha OS=Rattus norvegicus
GN=Scn8a PE=1 SV=1
Length = 1978
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 16/140 (11%)
Query: 2 LTLFEVLSFKGWLDVR---------DILKTQLGDAHV-IYIHVYIFLGCMIGLTLFVGVV 51
L L +V +FKGW+D+ D G+ ++ IY ++I G L LF+GV+
Sbjct: 1402 LALLQVATFKGWMDIMYAAVDSRKPDEQPDYEGNIYMYIYFVIFIIFGSFFTLNLFIGVI 1461
Query: 52 IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N+++ K +T +Q+++ + K+L +P PRP K + ++D
Sbjct: 1462 IDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRP-LNKIQGIVFDFVTQQ 1520
Query: 107 WFKRLIAAVVLINSMLLIVS 126
F +I ++ +N + ++V
Sbjct: 1521 AFDIVIMMLICLNMVTMMVE 1540
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 31/69 (44%)
Query: 2 LTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKGT 61
L LF +++ W ++ + G ++I+ + IF+G + L + VV Y E
Sbjct: 361 LALFRLMTQDYWENLYQLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQA 420
Query: 62 ALLTVDQRR 70
L +Q+
Sbjct: 421 TLEEAEQKE 429
>sp|Q9WTU3|SCN8A_MOUSE Sodium channel protein type 8 subunit alpha OS=Mus musculus GN=Scn8a
PE=1 SV=1
Length = 1978
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 16/140 (11%)
Query: 2 LTLFEVLSFKGWLDVR---------DILKTQLGDAHV-IYIHVYIFLGCMIGLTLFVGVV 51
L L +V +FKGW+D+ D G+ ++ IY ++I G L LF+GV+
Sbjct: 1402 LALLQVATFKGWMDIMYAAVDSRKPDEQPDYEGNIYMYIYFVIFIIFGSFFTLNLFIGVI 1461
Query: 52 IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N+++ K +T +Q+++ + K+L +P PRP K + ++D
Sbjct: 1462 IDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRP-LNKIQGIVFDFVTQQ 1520
Query: 107 WFKRLIAAVVLINSMLLIVS 126
F +I ++ +N + ++V
Sbjct: 1521 AFDIVIMMLICLNMVTMMVE 1540
>sp|Q9UQD0|SCN8A_HUMAN Sodium channel protein type 8 subunit alpha OS=Homo sapiens GN=SCN8A
PE=1 SV=1
Length = 1980
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 69/140 (49%), Gaps = 16/140 (11%)
Query: 2 LTLFEVLSFKGWLDV--------RDILKTQLGDAHVIYIH--VYIFLGCMIGLTLFVGVV 51
L L +V +FKGW+D+ + + + D +YI+ ++I G L LF+GV+
Sbjct: 1404 LALLQVATFKGWMDIMYAAVDSRKPDEQPKYEDNIYMYIYFVIFIIFGSFFTLNLFIGVI 1463
Query: 52 IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N+++ K +T +Q+++ + K+L +P PRP K + ++D
Sbjct: 1464 IDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRP-LNKIQGIVFDFVTQQ 1522
Query: 107 WFKRLIAAVVLINSMLLIVS 126
F +I ++ +N + ++V
Sbjct: 1523 AFDIVIMMLICLNMVTMMVE 1542
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 31/69 (44%)
Query: 2 LTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKGT 61
L LF +++ W ++ + G ++I+ + IF+G + L + VV Y E
Sbjct: 361 LALFRLMTQDYWENLYQLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQA 420
Query: 62 ALLTVDQRR 70
L +Q+
Sbjct: 421 TLEEAEQKE 429
>sp|Q9UI33|SCNBA_HUMAN Sodium channel protein type 11 subunit alpha OS=Homo sapiens
GN=SCN11A PE=1 SV=2
Length = 1791
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 2 LTLFEVLSFKGWLD-----VRDILKTQLGDAHV-----IYIHVYIFLGCMIGLTLFVGVV 51
L L +V +FKGW+D V K Q + IY V+I G L LF+GV+
Sbjct: 1248 LALLQVATFKGWMDIIYAAVDSTEKEQQPEFESNSLGYIYFVVFIIFGSFFTLNLFIGVI 1307
Query: 52 IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRP 90
I N+++ + +T +Q+++ + K+L +P PRP
Sbjct: 1308 IDNFNQQQKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRP 1351
>sp|Q2XVR3|SC4AA_DANRE Sodium channel protein type 4 subunit alpha A OS=Danio rerio
GN=scn4aa PE=2 SV=2
Length = 1829
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 69/140 (49%), Gaps = 16/140 (11%)
Query: 2 LTLFEVLSFKGWLDV-------RDILKTQLGDAHV---IYIHVYIFLGCMIGLTLFVGVV 51
L+L ++ +FKGW+D+ R++ + + ++ +Y ++I G L LF+GV+
Sbjct: 1201 LSLLQIATFKGWMDIMYAAVDSREVDEQPSYEINLYMYLYFVIFIIFGSFFTLNLFIGVI 1260
Query: 52 IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N+++ K +T +Q+++ + K+L + PRP + ++D
Sbjct: 1261 IDNFNQQKSKFGGKDIFMTEEQKKYYNAMKKLGAKKRPKPIPRPSNI-IQGLVFDFISKQ 1319
Query: 107 WFKRLIAAVVLINSMLLIVS 126
+F I ++ +N + +++
Sbjct: 1320 FFDIFIMVLICLNMVTMMIE 1339
>sp|Q28371|SCN4A_HORSE Sodium channel protein type 4 subunit alpha OS=Equus caballus
GN=SCN4A PE=1 SV=1
Length = 1834
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 66/140 (47%), Gaps = 16/140 (11%)
Query: 2 LTLFEVLSFKGWLDVR----DILKTQLGDAHVIYIHVYIF------LGCMIGLTLFVGVV 51
L+L +V +FKGW+D+ D + + + + I++Y++ G + + ++
Sbjct: 1232 LSLLQVATFKGWMDIMYSAVDSREQEEQPQYEVNIYMYLYFVIFIIFGSFFTINSLIRLI 1291
Query: 52 IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N+++ K +T +Q+++ + K+L +P PRP K + +YD
Sbjct: 1292 IVNFNQQKKKLGGKDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPQN-KIQGMVYDFVTKQ 1350
Query: 107 WFKRLIAAVVLINSMLLIVS 126
F I ++ +N + ++V
Sbjct: 1351 VFDITIMILICLNMVTMMVE 1370
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 2 LTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKGT 61
L LF ++ W ++ + G ++I+ V IFLG + L + VV Y+E +
Sbjct: 391 LALFRLMIQDYWENLFQLTLRAAGKTYMIFFVVIIFLGSFYLINLILAVVTMAYAE-QNE 449
Query: 62 ALLTVDQRRWCDLKKRLKIAQ 82
A L DQ + + ++ ++ Q
Sbjct: 450 ATLAEDQEKEEEFQQMMEKFQ 470
>sp|Q9W0Y8|SCN60_DROME Sodium channel protein 60E OS=Drosophila melanogaster GN=NaCP60E PE=2
SV=5
Length = 2821
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 18/139 (12%)
Query: 2 LTLFEVLSFKGWL-------DVRDILKTQLGDAHV---IYIHVYIFLGCMIGLTLFVGVV 51
L L +V +F+GW+ D R + +A++ IY ++I G L LF+GV+
Sbjct: 1925 LALLQVATFEGWMEVMADAVDARGVDLQPQREANLYAYIYFVIFIVCGSFFTLNLFIGVI 1984
Query: 52 IANYS----ENKGTAL---LTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQ 104
I N++ + +G L LT Q+ + K+L +P + RP + A YD++
Sbjct: 1985 IDNFNMLKKKYEGGVLEMFLTESQKHYYTAMKKLGRKKPQKVIKRP-INHFLAMFYDLSN 2043
Query: 105 NLWFKRLIAAVVLINSMLL 123
+ F+ I ++ +N + +
Sbjct: 2044 SRRFEIAIFVLIFLNMLTM 2062
>sp|Q05973|SCN1_LOLBL Sodium channel protein 1 brain OS=Loligo bleekeri PE=2 SV=1
Length = 1522
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 2 LTLFEVLSFKGWL-------DVRDILKTQLGDAHV---IYIHVYIFLGCMIGLTLFVGVV 51
L LF+V +F+GW+ DV ++ + +A V Y ++I G L L +GV+
Sbjct: 981 LALFQVATFEGWMEIMADAVDVTEVDEQPKFEATVYYYFYFVLFIIFGSFFVLNLVIGVI 1040
Query: 52 IANYS----ENKGTAL---LTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDV 102
I +S + GT L LT Q+ + + K+L +P RP K +A +YD+
Sbjct: 1041 IDKFSFLKKKYDGTYLDMFLTPTQQNYYNTLKKLGTKKPQKTVKRPKN-KCQAVVYDL 1097
>sp|Q25452|CAC1M_MUSDO Muscle calcium channel subunit alpha-1 OS=Musca domestica PE=2 SV=1
Length = 1687
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 1 MLTLFEVLSFKGWLDVRDILKTQLGDA-HVIYIHVYIFLGCMIGLTLFVGVVIANYSENK 59
MLT+F+ ++ +GW DV ++ +G + IY + LG + L +GV+ +S+ +
Sbjct: 275 MLTVFQCITLEGWTDVLYSIQDAMGSSWEWIYFVSMVILGAFFVMNLILGVLSGEFSKER 334
Query: 60 GTA-------LLTVDQRRWCDLKKRLK-IAQPLHLPPRPDA 92
A L Q+ DL+ L I Q + P PDA
Sbjct: 335 TKAKNRGDFQKLREKQQIEEDLRGYLDWITQAEDIEPDPDA 375
>sp|Q01118|SCN7A_HUMAN Sodium channel protein type 7 subunit alpha OS=Homo sapiens GN=SCN7A
PE=2 SV=2
Length = 1682
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 64/139 (46%), Gaps = 16/139 (11%)
Query: 2 LTLFEVLSFKGWLDVR----DILKTQLGDAHVIYIHVY------IFLGCMIGLTLFVGVV 51
L+L +V +F GW+ + D + + + I++Y I G + L++ + V+
Sbjct: 1133 LSLLQVATFNGWITIMNSAIDSVAVNIQPHFEVNIYMYCYFINFIIFGVFLPLSMLITVI 1192
Query: 52 IANYSENK-----GTALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
I N++++K +TV QR+ K+L PRP K + I+DV +
Sbjct: 1193 IDNFNKHKIKLGGSNIFITVKQRKQYRRLKKLMYEDSQRPVPRP-LNKLQGFIFDVVTSQ 1251
Query: 107 WFKRLIAAVVLINSMLLIV 125
F ++ ++ ++ +++
Sbjct: 1252 AFNVIVMVLICFQAIAMMI 1270
>sp|Q8BVN3|CTSR4_MOUSE Cation channel sperm-associated protein 4 OS=Mus musculus
GN=Catsper4 PE=1 SV=1
Length = 442
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 1 MLTLFEVLSFKGWLDV-----RDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANY 55
+ TLF ++ GWLD+ D + + IY V+I LG IGL LFV VV N
Sbjct: 227 LYTLFICITQDGWLDIYTDFQMDEREYAMEVGGAIYFAVFITLGAFIGLNLFVVVVTTNL 286
Query: 56 SE 57
+
Sbjct: 287 EQ 288
>sp|Q7RTX7|CTSR4_HUMAN Cation channel sperm-associated protein 4 OS=Homo sapiens
GN=CATSPER4 PE=1 SV=1
Length = 472
Score = 35.8 bits (81), Expect = 0.082, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Query: 1 MLTLFEVLSFKGWLDVRDILKTQ-------LGDAHVIYIHVYIFLGCMIGLTLFVGVVIA 53
+ TLF ++ GW+D+ +T+ +G A IY ++I +G IG+ LFV VV
Sbjct: 251 LYTLFICITQDGWVDIYSDFQTEKREYAMEIGGA--IYFTIFITIGAFIGINLFVIVVTT 308
Query: 54 NYSE 57
N +
Sbjct: 309 NLEQ 312
>sp|Q24270|CAC1D_DROME Voltage-dependent calcium channel type D subunit alpha-1
OS=Drosophila melanogaster GN=Ca-alpha1D PE=1 SV=2
Length = 2516
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 1 MLTLFEVLSFKGWLDVRDILKTQLG-DAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENK 59
MLT+F+ ++ +GW DV ++ +G D +Y + LG + L +GV+ +S+ +
Sbjct: 826 MLTVFQCVTLEGWTDVLYSIQDAMGSDWQWMYFISMVILGAFFVMNLILGVLSGEFSKER 885
Query: 60 GTALLTVDQRRWCDLKKRLKIAQPL 84
A D ++ L+++ +I + L
Sbjct: 886 NKAKNRGDFQK---LREKQQIEEDL 907
>sp|O57483|CAC1S_LITCT Voltage-dependent L-type calcium channel subunit alpha-1S
OS=Lithobates catesbeiana PE=2 SV=1
Length = 1688
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 29/142 (20%)
Query: 1 MLTLFEVLSFKGWLDV-RDILKTQLGDAHVIYIH---------VYIFLGCMIGLTLFVGV 50
M++LF + +F+GW + + + D IY + VYI L + +FVG
Sbjct: 1002 MMSLFTISTFEGWPQLLYRAIDSHAEDMGPIYNYRIEIAVFFIVYIILIAFFMMNIFVGF 1061
Query: 51 VIANYSENKGTALLTVDQRRWCDLKKRLKI-------AQPL--HLPPRPDAFKYRARIYD 101
VI + E + + C+L K + A+PL ++P P +K I+
Sbjct: 1062 VIVTFQEQGE------QEYKDCELDKNQRQCVQYALKARPLRRYIPKNPHQYK----IWY 1111
Query: 102 VTQNLWFKRLIAAVVLINSMLL 123
V + +F+ L+ ++ +N++ L
Sbjct: 1112 VVTSSYFEYLMFFLITLNTISL 1133
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 1 MLTLFEVLSFKGWLDVRDILKTQLGDAHV-IYIHVYIFLGCMIGLTLFVGVVIANYSENK 59
MLT+++ ++ +GW +V + +G+ IY I LG L L +GV+ +++ +
Sbjct: 280 MLTVYQCITMEGWTEVLYWVNDAIGNEWPWIYFVSLILLGSFFVLNLVLGVLSGEFTKER 339
Query: 60 GTA 62
A
Sbjct: 340 EKA 342
>sp|Q13698|CAC1S_HUMAN Voltage-dependent L-type calcium channel subunit alpha-1S OS=Homo
sapiens GN=CACNA1S PE=1 SV=4
Length = 1873
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 69/140 (49%), Gaps = 25/140 (17%)
Query: 1 MLTLFEVLSFKGW------------LDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFV 48
M++LF V +F+GW DV I ++ A I++ + M + +FV
Sbjct: 1004 MMSLFTVSTFEGWPQLLYKAIDSNAEDVGPIYNNRVEMAIFFIIYIILIAFFM--MNIFV 1061
Query: 49 GVVIANYSENKGTALLTVD---QRRWCDLKKRLKIAQPL--HLPPRPDAFKYRARIYDVT 103
G VI + E T + +R C ++ LK A+PL ++P P Y+ +++ +
Sbjct: 1062 GFVIVTFQEQGETEYKNCELDKNQRQC-VQYALK-ARPLRCYIPKNP----YQYQVWYIV 1115
Query: 104 QNLWFKRLIAAVVLINSMLL 123
+ +F+ L+ A++++N++ L
Sbjct: 1116 TSSYFEYLMFALIMLNTICL 1135
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 1 MLTLFEVLSFKGWLDVRDILKTQLGDAHV-IYIHVYIFLGCMIGLTLFVGVVIANYSENK 59
MLT+++ ++ +GW DV + +G+ IY I LG L L +GV+ +++ +
Sbjct: 282 MLTVYQCITMEGWTDVLYWVNDAIGNEWPWIYFVTLILLGSFFILNLVLGVLSGEFTKER 341
Query: 60 GTA 62
A
Sbjct: 342 EKA 344
>sp|Q13936|CAC1C_HUMAN Voltage-dependent L-type calcium channel subunit alpha-1C OS=Homo
sapiens GN=CACNA1C PE=1 SV=4
Length = 2221
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 1 MLTLFEVLSFKGWLDVRDILKTQLG-DAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENK 59
MLT+F+ ++ +GW DV + +G D IY I +G L L +GV+ +S+ +
Sbjct: 353 MLTVFQCITMEGWTDVLYWVNDAVGRDWPWIYFVTLIIIGSFFVLNLVLGVLSGEFSKER 412
Query: 60 GTALLTVDQRRWCDLKKRLKIAQPL 84
A D ++ L+++ ++ + L
Sbjct: 413 EKAKARGDFQK---LREKQQLEEDL 434
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 23/139 (16%)
Query: 1 MLTLFEVLSFKGWLDV--RDILKTQLGDAHVIYIH---------VYIFLGCMIGLTLFVG 49
M+ LF V +F+GW ++ R I + D IY + +YI + + +FVG
Sbjct: 1125 MMALFTVSTFEGWPELLYRSI-DSHTEDKGPIYNYRVEISIFFIIYIIIIAFFMMNIFVG 1183
Query: 50 VVIANYSENKGTALLTVDQRRWCDLKKRLKIAQPLHLPPRP-----DAFKYRARIYDVTQ 104
VI + E + + C+L K + L RP +++ +++ V
Sbjct: 1184 FVIVTFQEQG------EQEYKNCELDKNQRQCVEYALKARPLRRYIPKNQHQYKVWYVVN 1237
Query: 105 NLWFKRLIAAVVLINSMLL 123
+ +F+ L+ ++L+N++ L
Sbjct: 1238 STYFEYLMFVLILLNTICL 1256
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.144 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,566,451
Number of Sequences: 539616
Number of extensions: 1680664
Number of successful extensions: 4513
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 4284
Number of HSP's gapped (non-prelim): 205
length of query: 131
length of database: 191,569,459
effective HSP length: 97
effective length of query: 34
effective length of database: 139,226,707
effective search space: 4733708038
effective search space used: 4733708038
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)