Query psy12189
Match_columns 131
No_of_seqs 116 out of 1149
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 20:57:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12189.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12189hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2302|consensus 99.9 2.5E-25 5.4E-30 185.0 6.7 128 1-130 1324-1465(1956)
2 KOG2301|consensus 99.9 1.8E-24 3.9E-29 189.1 3.9 129 1-130 1040-1181(1592)
3 KOG2301|consensus 99.7 5.3E-19 1.1E-23 155.2 3.1 130 1-130 282-467 (1592)
4 KOG2302|consensus 99.6 7.1E-16 1.5E-20 129.4 5.3 59 2-60 340-398 (1956)
5 PF00520 Ion_trans: Ion transp 98.2 2.7E-07 5.8E-12 64.5 -0.6 50 2-51 151-200 (200)
6 PLN03223 Polycystin cation cha 97.6 8E-05 1.7E-09 65.9 5.2 59 2-60 1367-1427(1634)
7 PF06512 Na_trans_assoc: Sodiu 95.2 0.0031 6.8E-08 46.5 -1.2 25 92-116 215-239 (239)
8 KOG3599|consensus 93.9 0.14 3.1E-06 44.2 5.6 33 28-60 652-684 (798)
9 PF08016 PKD_channel: Polycyst 93.8 0.068 1.5E-06 42.6 3.3 30 28-57 395-424 (425)
10 TIGR00870 trp transient-recept 92.9 0.21 4.5E-06 42.6 5.1 34 28-61 588-621 (743)
11 KOG3533|consensus 70.1 6.5 0.00014 36.6 3.9 29 29-57 2543-2571(2706)
12 KOG3676|consensus 64.0 13 0.00029 32.2 4.5 31 29-59 621-651 (782)
13 PF05624 LSR: Lipolysis stimul 62.7 6.1 0.00013 21.8 1.5 20 31-51 3-22 (49)
14 KOG0510|consensus 50.4 30 0.00065 30.5 4.4 37 28-64 730-766 (929)
15 PF12113 SVM_signal: SVM prote 43.2 13 0.00029 19.0 0.8 17 29-45 10-26 (33)
16 KOG3733|consensus 43.2 30 0.00064 28.4 3.2 31 29-59 481-511 (566)
17 COG4853 Uncharacterized protei 41.6 20 0.00043 26.9 1.8 18 37-54 10-27 (264)
18 KOG3614|consensus 37.4 97 0.0021 29.0 5.7 31 30-60 1017-1047(1381)
19 COG4117 Thiosulfate reductase 36.1 1.8E+02 0.0038 21.5 6.7 65 31-103 79-146 (221)
20 PF00287 Na_K-ATPase: Sodium / 31.0 61 0.0013 24.9 3.1 38 10-47 14-60 (289)
21 KOG3609|consensus 30.6 71 0.0015 28.2 3.7 26 37-62 593-618 (822)
22 PF11239 DUF3040: Protein of u 28.8 56 0.0012 19.9 2.2 20 65-84 5-24 (82)
23 PF04923 Ninjurin: Ninjurin ; 27.8 1.7E+02 0.0038 18.8 6.0 31 25-55 35-65 (104)
24 PF11549 Sec31: Protein transp 26.5 18 0.0004 20.2 -0.3 8 10-17 23-30 (51)
25 COG1422 Predicted membrane pro 24.8 2.8E+02 0.0061 20.2 5.4 14 15-28 27-41 (201)
26 PF06305 DUF1049: Protein of u 23.9 1.5E+02 0.0033 16.8 4.5 14 42-55 28-41 (68)
27 PF14384 DUF4415: Domain of un 23.9 51 0.0011 19.0 1.3 16 8-23 45-60 (62)
28 PF14364 DUF4408: Domain of un 22.1 68 0.0015 16.4 1.4 13 41-53 18-30 (34)
29 PRK12270 kgd alpha-ketoglutara 21.4 2.7E+02 0.0059 25.7 5.6 63 43-112 447-512 (1228)
30 PF09782 NDUF_B6: NADH:ubiquin 21.0 2E+02 0.0043 20.1 3.9 22 63-84 22-43 (156)
31 PF08412 Ion_trans_N: Ion tran 20.5 1.2E+02 0.0026 18.5 2.4 20 106-125 47-66 (77)
No 1
>KOG2302|consensus
Probab=99.92 E-value=2.5e-25 Score=184.96 Aligned_cols=128 Identities=16% Similarity=0.297 Sum_probs=105.8
Q ss_pred CeeeEeecccCCHHHHHHHHHHhc----------CCceeehhhHHHHHHHHHHHHHHHHHHHhhchhhhccccccHHH--
Q psy12189 1 MLTLFEVLSFKGWLDVRDILKTQL----------GDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKGTALLTVDQ-- 68 (131)
Q Consensus 1 ~ltlF~i~t~egW~~im~~~~da~----------~~~~~lyfi~~i~ig~ff~lnlfiavi~~~f~~~~~~~~l~~~q-- 68 (131)
++|||.++|.|||++|||++.|++ +||..+|||+|.+|.+||++|+|+||+++||.|.+++++.++..
T Consensus 1324 lmSLFvLaSkDgWv~ImyDgldavavdqqPI~nhnpwmllYfIsfllIvsffVlnmfVgvvvenfhKcrqhqe~EeArRr 1403 (1956)
T KOG2302|consen 1324 LMSLFVLASKDGWVNIMYDGLDAVAVDQQPILNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEAEEARRR 1403 (1956)
T ss_pred HHHHHHHhcccchhhhhccchhhceeeeeccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999997 37889999999999999999999999999999987654433222
Q ss_pred --HHHHHHHhHHhhcCCCCCCCCCCcchHHHHHhhhccchhhHHHHHHHHHHHHhHhhhhcCCC
Q psy12189 69 --RRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINSMLLIVSLAPT 130 (131)
Q Consensus 69 --~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~f~~~i~~~I~~N~i~m~~~~~~~ 130 (131)
|...+..|++. .++.++++.++...|+.+++.|.+++.+.+|+++|++|+++|++|||.|
T Consensus 1404 eEKrLrrlekkrR--~Aq~kpyyseyt~~rrlIh~~ctShyld~fit~ii~LnvVtms~ehyqq 1465 (1956)
T KOG2302|consen 1404 EEKRLRRLEKKRR--AAQRKPYYSEYTMTRRLIHSKCTSHYLDQFITFIICLNVVTMSEEHYQQ 1465 (1956)
T ss_pred HHHHHHHHHHHHH--hccCCcccccccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 22222222222 3455566777889999999999999999999999999999999999987
No 2
>KOG2301|consensus
Probab=99.90 E-value=1.8e-24 Score=189.14 Aligned_cols=129 Identities=30% Similarity=0.592 Sum_probs=118.6
Q ss_pred CeeeEeecccCCHHHHHHHHHHhcC----------CceeehhhHHHHHHHHHHHHHHHHHHHhhchhhhccc---cccHH
Q psy12189 1 MLTLFEVLSFKGWLDVRDILKTQLG----------DAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKGTA---LLTVD 67 (131)
Q Consensus 1 ~ltlF~i~t~egW~~im~~~~da~~----------~~~~lyfi~~i~ig~ff~lnlfiavi~~~f~~~~~~~---~l~~~ 67 (131)
|++||+++|.|||.|+||.++|+++ ....+||+.|+++|+||.+|+|+|++++||+++++++ .+++|
T Consensus 1040 ~laLf~v~tf~GW~~i~~~~ids~~~~~~p~~~~~~~~~~ffvifii~~~ff~lnlFvgvII~nf~~q~~~~~~~~~~~e 1119 (1592)
T KOG2301|consen 1040 MLALFQVATFKGWPDIMYAAIDSRGVNAQPILESNLYMYLFFVIFIIIGSFFTLNLFVGVIIDNFNQQKGKAGGTFMTEE 1119 (1592)
T ss_pred HHHHHHHHhcCCHHHHHHHHhhhhccCcCCcccccccceeehhhhhhHHhhhheeeeEEEEEechhhhchhhhhhhhhHH
Confidence 5799999999999999999999986 2479999999999999999999999999999998754 45899
Q ss_pred HHHHHHHHhHHhhcCCCCCCCCCCcchHHHHHhhhccchhhHHHHHHHHHHHHhHhhhhcCCC
Q psy12189 68 QRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINSMLLIVSLAPT 130 (131)
Q Consensus 68 q~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~f~~~i~~~I~~N~i~m~~~~~~~ 130 (131)
|+++....+.+....|++..++|. ++.|..+++++.++.|+++++..|++|++.|++++|+|
T Consensus 1120 q~~~~~~~~~l~sk~~~r~ipr~~-~~~q~~~~~~v~~~~F~~~i~~li~ln~i~l~~~~~~q 1181 (1592)
T KOG2301|consen 1120 QKKRLNAAKKLGSKPPQRPIPRPR-NKLQGLVFDLVTSQAFDYLIMLLIFLNTIIMMVETYDQ 1181 (1592)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCc-chhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999998888888888776 59999999999999999999999999999999999987
No 3
>KOG2301|consensus
Probab=99.74 E-value=5.3e-19 Score=155.24 Aligned_cols=130 Identities=16% Similarity=0.253 Sum_probs=98.5
Q ss_pred CeeeEeecccCCHHHHHHHHHHhcCCceeehhhHHHHHHHHHHHHHHHHHHHhhchhhhccc-------cccHHH-----
Q psy12189 1 MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKGTA-------LLTVDQ----- 68 (131)
Q Consensus 1 ~ltlF~i~t~egW~~im~~~~da~~~~~~lyfi~~i~ig~ff~lnlfiavi~~~f~~~~~~~-------~l~~~q----- 68 (131)
++|+|++.|+|||+|++|...||.|.+.++||+.++++|+|+++|+++||+...|+|++++. +.+..|
T Consensus 282 ~lt~f~~~tqe~w~~~~y~~~~a~g~~~~~~Fv~~i~lgsf~~~nl~l~vls~~f~e~r~~~~~~~~~~~~~~~~~~~~~ 361 (1592)
T KOG2301|consen 282 FLTVFRLMTQEGWEDLLYLTLDALGKWYMLFFVTLIFLGSFYVKNLFLAVLSMAFAEERVAFEEEWQFKEPRFQEAFEEL 361 (1592)
T ss_pred HHHHHHHHhhcchHHHHHHHHHhcccceeEeeehhhhhccHHHHHHHHHHhhHHHHHHHHHHHhhhhhhchHHHHHHHHH
Confidence 57899999999999999999999998999999999999999999999999999999876421 111111
Q ss_pred ----HHHHHHHhHHhhc---------------CCCC-------------------------CCCCCCcchHHHHHhhhcc
Q psy12189 69 ----RRWCDLKKRLKIA---------------QPLH-------------------------LPPRPDAFKYRARIYDVTQ 104 (131)
Q Consensus 69 ----~~~~~~~~~~~~~---------------~p~~-------------------------~~~~~~~~~~r~~~~~~~~ 104 (131)
.+|...-...... +|.. ....|.+.++|..++++++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~ 441 (1592)
T KOG2301|consen 362 LEKYEDGIFLAEADGSVESGPKSKLFSVDSLEDVNSRVELLSAVSYKCPLAWYKSAKNFLIWFCCPIWLKFKQWLRKMVF 441 (1592)
T ss_pred HHHHHHHHHHHHHhhhhccccchhhhhhhhhhhhhhhhhhhhhhcccCchHhHhhccceeeeccchHHHHHHHHHHHhhh
Confidence 1121110000000 0000 0112334578899999999
Q ss_pred chhhHHHHHHHHHHHHhHhhhhcCCC
Q psy12189 105 NLWFKRLIAAVVLINSMLLIVSLAPT 130 (131)
Q Consensus 105 ~~~f~~~i~~~I~~N~i~m~~~~~~~ 130 (131)
++.+..++++++.+|++.|++|||++
T Consensus 442 ~~~~~~~i~i~i~lnt~~~a~eh~~~ 467 (1592)
T KOG2301|consen 442 DPFVILFITICIALNTLFMAMEHYEM 467 (1592)
T ss_pred cceehhhhHHHHhhcccEEEEEEeCC
Confidence 99999999999999999999999987
No 4
>KOG2302|consensus
Probab=99.60 E-value=7.1e-16 Score=129.37 Aligned_cols=59 Identities=24% Similarity=0.537 Sum_probs=55.5
Q ss_pred eeeEeecccCCHHHHHHHHHHhcCCceeehhhHHHHHHHHHHHHHHHHHHHhhchhhhc
Q psy12189 2 LTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60 (131)
Q Consensus 2 ltlF~i~t~egW~~im~~~~da~~~~~~lyfi~~i~ig~ff~lnlfiavi~~~f~~~~~ 60 (131)
+.+||+.|+|||+||||-.|||..-++.+|||+.|++|+||++||.+-||...|++.|+
T Consensus 340 iaifqvitlegwvdimyyvmdahsfynfiyfilliivgsffminKOGvviatqfsetkq 398 (1956)
T KOG2302|consen 340 IAIFQVITLEGWVDIMYYVMDAHSFYNFIYFILLIIVGSFFMINLCLVVIATQFSETKQ 398 (1956)
T ss_pred hhhheeeeehhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhH
Confidence 46899999999999999999999999999999999999999999999999999997653
No 5
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=98.17 E-value=2.7e-07 Score=64.51 Aligned_cols=50 Identities=24% Similarity=0.406 Sum_probs=45.4
Q ss_pred eeeEeecccCCHHHHHHHHHHhcCCceeehhhHHHHHHHHHHHHHHHHHH
Q psy12189 2 LTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVV 51 (131)
Q Consensus 2 ltlF~i~t~egW~~im~~~~da~~~~~~lyfi~~i~ig~ff~lnlfiavi 51 (131)
.++|++.|+|||.|+++..++..++...+|++.++++++++++|+++|++
T Consensus 151 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 151 YWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 45678899999999999998777788899999999999999999999986
No 6
>PLN03223 Polycystin cation channel protein; Provisional
Probab=97.64 E-value=8e-05 Score=65.87 Aligned_cols=59 Identities=20% Similarity=0.164 Sum_probs=43.3
Q ss_pred eeeEeecccCCHH--HHHHHHHHhcCCceeehhhHHHHHHHHHHHHHHHHHHHhhchhhhc
Q psy12189 2 LTLFEVLSFKGWL--DVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60 (131)
Q Consensus 2 ltlF~i~t~egW~--~im~~~~da~~~~~~lyfi~~i~ig~ff~lnlfiavi~~~f~~~~~ 60 (131)
.|+|++.+++.+. +.+....+....+..+||++|+++..|+++|||+|+|.+.|++.++
T Consensus 1367 ~TLFqMLLGDfdYF~eDLk~l~e~nrVLGPIYFfSFILLV~FILLNMFIAII~DSFsEVK~ 1427 (1634)
T PLN03223 1367 NSLFENLLGDITYFNEDLKNLTGLQFVVGMIYFYSYNIFVFMILFNFLLAIICDAFGEVKA 1427 (1634)
T ss_pred HHHHHHHHcCchHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788888887652 1111111112345789999999999999999999999999998764
No 7
>PF06512 Na_trans_assoc: Sodium ion transport-associated; InterPro: IPR010526 Members of this entry contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of IPR005821 from INTERPRO and, less often, one copy of IPR000048 from INTERPRO.; GO: 0005248 voltage-gated sodium channel activity, 0006814 sodium ion transport, 0001518 voltage-gated sodium channel complex
Probab=95.21 E-value=0.0031 Score=46.51 Aligned_cols=25 Identities=20% Similarity=0.600 Sum_probs=22.8
Q ss_pred cchHHHHHhhhccchhhHHHHHHHH
Q psy12189 92 AFKYRARIYDVTQNLWFKRLIAAVV 116 (131)
Q Consensus 92 ~~~~r~~~~~~~~~~~f~~~i~~~I 116 (131)
+..+|+.||++|.|+|||.||+++|
T Consensus 215 W~~~R~~c~~iVeh~~FEtfIifmI 239 (239)
T PF06512_consen 215 WWNLRKTCYRIVEHKWFETFIIFMI 239 (239)
T ss_pred HHHHHhhheeeecccchhheeeeeC
Confidence 4688999999999999999999876
No 8
>KOG3599|consensus
Probab=93.88 E-value=0.14 Score=44.23 Aligned_cols=33 Identities=30% Similarity=0.533 Sum_probs=30.5
Q ss_pred eeehhhHHHHHHHHHHHHHHHHHHHhhchhhhc
Q psy12189 28 HVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60 (131)
Q Consensus 28 ~~lyfi~~i~ig~ff~lnlfiavi~~~f~~~~~ 60 (131)
..+||.+++++.+|.++|||+|+|.+.|++.++
T Consensus 652 G~~~~~~~v~~v~~illnmF~aiI~~~~~evk~ 684 (798)
T KOG3599|consen 652 GPLLFLTYVFVVSFILLNLFVAIINDTYGEVKA 684 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhH
Confidence 478999999999999999999999999998764
No 9
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=93.78 E-value=0.068 Score=42.65 Aligned_cols=30 Identities=27% Similarity=0.611 Sum_probs=27.7
Q ss_pred eeehhhHHHHHHHHHHHHHHHHHHHhhchh
Q psy12189 28 HVIYIHVYIFLGCMIGLTLFVGVVIANYSE 57 (131)
Q Consensus 28 ~~lyfi~~i~ig~ff~lnlfiavi~~~f~~ 57 (131)
..+||+.|+++..++++|+|+|++.+.|++
T Consensus 395 g~l~~~~~~~~~~~illNl~iaIi~~~y~~ 424 (425)
T PF08016_consen 395 GPLFFFSFMFLVFFILLNLFIAIINDSYEE 424 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 578999999999999999999999999975
No 10
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=92.93 E-value=0.21 Score=42.58 Aligned_cols=34 Identities=9% Similarity=0.213 Sum_probs=30.1
Q ss_pred eeehhhHHHHHHHHHHHHHHHHHHHhhchhhhcc
Q psy12189 28 HVIYIHVYIFLGCMIGLTLFVGVVIANYSENKGT 61 (131)
Q Consensus 28 ~~lyfi~~i~ig~ff~lnlfiavi~~~f~~~~~~ 61 (131)
..+.|++|.++.+.+++||+||++.+.|++.+++
T Consensus 588 ~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~ 621 (743)
T TIGR00870 588 GLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADD 621 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 4678999999999999999999999999977644
No 11
>KOG3533|consensus
Probab=70.05 E-value=6.5 Score=36.56 Aligned_cols=29 Identities=31% Similarity=0.655 Sum_probs=21.1
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHhhchh
Q psy12189 29 VIYIHVYIFLGCMIGLTLFVGVVIANYSE 57 (131)
Q Consensus 29 ~lyfi~~i~ig~ff~lnlfiavi~~~f~~ 57 (131)
.+|=..|+++.--.++||..|||+++|..
T Consensus 2543 V~YDllFffivIiIVLNLIFGVIIDTFaD 2571 (2706)
T KOG3533|consen 2543 VAYDLLFFFIVIIIVLNLIFGVIIDTFAD 2571 (2706)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 34444555555556999999999999974
No 12
>KOG3676|consensus
Probab=63.99 E-value=13 Score=32.25 Aligned_cols=31 Identities=16% Similarity=0.334 Sum_probs=27.1
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHhhchhhh
Q psy12189 29 VIYIHVYIFLGCMIGLTLFVGVVIANYSENK 59 (131)
Q Consensus 29 ~lyfi~~i~ig~ff~lnlfiavi~~~f~~~~ 59 (131)
.+-|++|.++.+-.++||+||..-+++.+..
T Consensus 621 kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va 651 (782)
T KOG3676|consen 621 KILFVAYMILVTILLLNMLIAMMGNTYETVA 651 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 5568899999999999999999999998653
No 13
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=62.68 E-value=6.1 Score=21.79 Aligned_cols=20 Identities=30% Similarity=0.620 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q psy12189 31 YIHVYIFLGCMIGLTLFVGVV 51 (131)
Q Consensus 31 yfi~~i~ig~ff~lnlfiavi 51 (131)
-|+.++++|+|+++- .+|+-
T Consensus 3 l~V~~iilg~~ll~~-LigiC 22 (49)
T PF05624_consen 3 LFVVLIILGALLLLL-LIGIC 22 (49)
T ss_pred EEEeHHHHHHHHHHH-HHHHH
Confidence 367889999886554 44554
No 14
>KOG0510|consensus
Probab=50.45 E-value=30 Score=30.52 Aligned_cols=37 Identities=11% Similarity=0.279 Sum_probs=29.2
Q ss_pred eeehhhHHHHHHHHHHHHHHHHHHHhhchhhhccccc
Q psy12189 28 HVIYIHVYIFLGCMIGLTLFVGVVIANYSENKGTALL 64 (131)
Q Consensus 28 ~~lyfi~~i~ig~ff~lnlfiavi~~~f~~~~~~~~l 64 (131)
+.+-|++|.++-.-+++||.+|.-+..-+..++++.+
T Consensus 730 s~~~f~~F~IfmtIvLMNLLiGLAV~DIq~vqk~A~L 766 (929)
T KOG0510|consen 730 SFAIFVLFTIFMTIVLMNLLIGLAVGDIQGVQKHAEL 766 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 3556888888899999999999999888766554433
No 15
>PF12113 SVM_signal: SVM protein signal sequence; InterPro: IPR021970 This domain is presumed to be a signal peptide sequence found in Sequence-variable mosaic (SVM) proteins []. It is found in phytoplasmas. This presumed signal sequence is about 30 amino acids in length.
Probab=43.18 E-value=13 Score=18.97 Aligned_cols=17 Identities=35% Similarity=0.665 Sum_probs=11.7
Q ss_pred eehhhHHHHHHHHHHHH
Q psy12189 29 VIYIHVYIFLGCMIGLT 45 (131)
Q Consensus 29 ~lyfi~~i~ig~ff~ln 45 (131)
.+++..|+++|=||..|
T Consensus 10 ii~i~Lf~~LGL~fI~N 26 (33)
T PF12113_consen 10 IINIFLFIFLGLFFITN 26 (33)
T ss_pred hhhhHHHHHHHHHheec
Confidence 45677788888776554
No 16
>KOG3733|consensus
Probab=43.18 E-value=30 Score=28.38 Aligned_cols=31 Identities=29% Similarity=0.488 Sum_probs=24.5
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHhhchhhh
Q psy12189 29 VIYIHVYIFLGCMIGLTLFVGVVIANYSENK 59 (131)
Q Consensus 29 ~lyfi~~i~ig~ff~lnlfiavi~~~f~~~~ 59 (131)
.+|.-+||-+--+.++.||+|+|.+.|...|
T Consensus 481 qiYLYSFISLfIYmvLSLFIAlItdaYDTIK 511 (566)
T KOG3733|consen 481 QIYLYSFISLFIYMVLSLFIALITDAYDTIK 511 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 4455566666667899999999999998765
No 17
>COG4853 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.58 E-value=20 Score=26.88 Aligned_cols=18 Identities=22% Similarity=0.444 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy12189 37 FLGCMIGLTLFVGVVIAN 54 (131)
Q Consensus 37 ~ig~ff~lnlfiavi~~~ 54 (131)
+|..|+++|+|++.+.-+
T Consensus 10 FIv~fLllnifL~~iffn 27 (264)
T COG4853 10 FIVVFLLLNIFLVSIFFN 27 (264)
T ss_pred ehhHHHHHHHHHHHHHhh
Confidence 455678899999999866
No 18
>KOG3614|consensus
Probab=37.43 E-value=97 Score=28.96 Aligned_cols=31 Identities=6% Similarity=0.368 Sum_probs=25.4
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHhhchhhhc
Q psy12189 30 IYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60 (131)
Q Consensus 30 lyfi~~i~ig~ff~lnlfiavi~~~f~~~~~ 60 (131)
+-.+.|+++.+-.++||.+|+.-..|.+..+
T Consensus 1017 lLl~~yLLv~nILL~NLLIA~Fn~tf~~v~~ 1047 (1381)
T KOG3614|consen 1017 LLLVIYLLVTNILLVNLLIAMFSYTFGNVQE 1047 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788889999999999999999976543
No 19
>COG4117 Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) [Energy production and conversion]
Probab=36.06 E-value=1.8e+02 Score=21.48 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=30.4
Q ss_pred hhhHHHHHHH---HHHHHHHHHHHHhhchhhhccccccHHHHHHHHHHhHHhhcCCCCCCCCCCcchHHHHHhhhc
Q psy12189 31 YIHVYIFLGC---MIGLTLFVGVVIANYSENKGTALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVT 103 (131)
Q Consensus 31 yfi~~i~ig~---ff~lnlfiavi~~~f~~~~~~~~l~~~q~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~ 103 (131)
++..|+++++ |++.|++-| +|...- ....++..|.+++....+....... . .+.|++++.+|-.+
T Consensus 79 f~~~wlL~a~~L~y~~~~l~tG----h~Rr~f-~p~~~~~~~~~rd~v~~l~~~~~H~-~--~~yN~lQklaY~~V 146 (221)
T COG4117 79 FAAMWLLLANLLGYLLINLVTG----HYRRRF-SPLLDRAARQTRDYVFALMKREEHP-F--RKYNPLQKLAYLGV 146 (221)
T ss_pred HHHHHHHHHHHHHHHHHhhccc----eeEEec-cchhhhhhhhhHHHHHHHHhhhcCC-c--cccCHHHHHHHHHH
Confidence 3444554443 455565555 343211 1234455555555433332221111 1 33579999888554
No 20
>PF00287 Na_K-ATPase: Sodium / potassium ATPase beta chain; InterPro: IPR000402 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the beta subunit found in the P-type cation exchange ATPases located in the plasma membranes of animal cells. These P-ATPases include both H+/K+-ATPases (3.6.3.10 from EC) and Na+/K+-ATPases (3.6.3.9 from EC), which belong to the IIC subfamily of ATPases [, ]. These ATPases catalyse the hydrolysis of ATP coupled with the exchange of cations, pumping one cation out of the cell (H+ or Na+) in exchange for K+. These ATPases contain an alpha subunit (IPR005775 from INTERPRO) that is the catalytic component, and a glycosylated beta subunit that regulates the number of sodium pumps transported to the plasma membrane through the assembly of alpha/beta heterodimers. The beta subunit has three highly conserved disulphide bonds within the extracellular domain that stabilise the alpha subunit, the alpha/beta interaction, and the catalytic activity of the alpha subunit []. Different beta isoforms exist, permitting greater regulatory control. An example of a H+/K+-ATPase is the gastric pump responsible for acid secretion in the stomach, transporting protons from the cytoplasm of parietal cells to create a large pH gradient in exchange for the internalisation of potassium ions, using ATP hydrolysis to drive the pump []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0005391 sodium:potassium-exchanging ATPase activity, 0006754 ATP biosynthetic process, 0006813 potassium ion transport, 0006814 sodium ion transport, 0016020 membrane; PDB: 2XZB_B 3A3Y_B 3N2F_D 3B8E_D 3KDP_D 3N23_D.
Probab=30.96 E-value=61 Score=24.86 Aligned_cols=38 Identities=16% Similarity=0.342 Sum_probs=15.4
Q ss_pred cCCHHHHHHHHHHhc--C----Cc---eeehhhHHHHHHHHHHHHHH
Q psy12189 10 FKGWLDVRDILKTQL--G----DA---HVIYIHVYIFLGCMIGLTLF 47 (131)
Q Consensus 10 ~egW~~im~~~~da~--~----~~---~~lyfi~~i~ig~ff~lnlf 47 (131)
.++|...+|+.-... | .| ..+|++.+.++.++|.+-|.
T Consensus 14 ~~~~~~fl~n~~~~~~lGRT~~sW~~I~lFYlifY~~La~lfa~~m~ 60 (289)
T PF00287_consen 14 WESFKRFLWNPETGEFLGRTGKSWGKILLFYLIFYAFLAALFAICMW 60 (289)
T ss_dssp --------------TTS-SSSSTHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred cchheeeeEcCCCCeEeccCcCccchhhhhHHHHHHHHHHHHHHHHH
Confidence 456777777655432 2 23 35677778888888877665
No 21
>KOG3609|consensus
Probab=30.56 E-value=71 Score=28.20 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhhchhhhccc
Q psy12189 37 FLGCMIGLTLFVGVVIANYSENKGTA 62 (131)
Q Consensus 37 ~ig~ff~lnlfiavi~~~f~~~~~~~ 62 (131)
++.--+++||.+|.+.+.|++..+++
T Consensus 593 vi~vIVLLNmLIAMmnnSyQeIeD~A 618 (822)
T KOG3609|consen 593 VILIIVLLNLLIAMMSNSYQEIEDDA 618 (822)
T ss_pred eeeHHHHHHHHHHHHHhHHHHHhhcc
Confidence 33335699999999999999876543
No 22
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=28.85 E-value=56 Score=19.85 Aligned_cols=20 Identities=25% Similarity=0.531 Sum_probs=16.0
Q ss_pred cHHHHHHHHHHhHHhhcCCC
Q psy12189 65 TVDQRRWCDLKKRLKIAQPL 84 (131)
Q Consensus 65 ~~~q~~~~~~~~~~~~~~p~ 84 (131)
++|||...++++.+...+|.
T Consensus 5 e~E~r~L~eiEr~L~~~DP~ 24 (82)
T PF11239_consen 5 EHEQRRLEEIERQLRADDPR 24 (82)
T ss_pred HHHHHHHHHHHHHHHhcCcH
Confidence 56788888898888888874
No 23
>PF04923 Ninjurin: Ninjurin ; InterPro: IPR007007 Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the formation of some tissues [].; GO: 0007155 cell adhesion, 0042246 tissue regeneration, 0016021 integral to membrane
Probab=27.83 E-value=1.7e+02 Score=18.84 Aligned_cols=31 Identities=19% Similarity=0.436 Sum_probs=25.7
Q ss_pred CCceeehhhHHHHHHHHHHHHHHHHHHHhhc
Q psy12189 25 GDAHVIYIHVYIFLGCMIGLTLFVGVVIANY 55 (131)
Q Consensus 25 ~~~~~lyfi~~i~ig~ff~lnlfiavi~~~f 55 (131)
||....|.....+++.-.++.+.+|+++---
T Consensus 35 g~~~~~y~~~l~Li~iSlvLQv~vgilli~~ 65 (104)
T PF04923_consen 35 GPEHPFYYFLLTLISISLVLQVVVGILLIFI 65 (104)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888999999999999999888443
No 24
>PF11549 Sec31: Protein transport protein SEC31; InterPro: IPR021614 Sec31 is involved in COPII coat formation as it forms through the sequential binding of three cytoplasmic proteins: Sar1, Sec23/24 and Sec13/31. Sec13/31 is recruited by the pre-budding complex and polymerisation of Sec13/31 occurs to form an octahedral cage that is the outer shell of the COPII coat []. Sec13/31 is a hetero-tetramer which is organised as a linear array of alpha-solenoid and beta-propeller domains to form a rod in which twenty-four copies assemble to form the COPII cub-octahedron []. ; PDB: 2QTV_D.
Probab=26.55 E-value=18 Score=20.19 Aligned_cols=8 Identities=38% Similarity=0.867 Sum_probs=2.9
Q ss_pred cCCHHHHH
Q psy12189 10 FKGWLDVR 17 (131)
Q Consensus 10 ~egW~~im 17 (131)
-|||.|+=
T Consensus 23 NdGWNDLp 30 (51)
T PF11549_consen 23 NDGWNDLP 30 (51)
T ss_dssp HS-TT---
T ss_pred cCcccccc
Confidence 47888764
No 25
>COG1422 Predicted membrane protein [Function unknown]
Probab=24.81 E-value=2.8e+02 Score=20.24 Aligned_cols=14 Identities=14% Similarity=-0.118 Sum_probs=6.9
Q ss_pred HHHHHHHHhc-CCce
Q psy12189 15 DVRDILKTQL-GDAH 28 (131)
Q Consensus 15 ~im~~~~da~-~~~~ 28 (131)
|.++.++|.. +|..
T Consensus 27 ~~i~~~ln~~f~P~i 41 (201)
T COG1422 27 DGIGGALNVVFGPLL 41 (201)
T ss_pred HHHHHHHHHHHhhhc
Confidence 3445555554 5653
No 26
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.88 E-value=1.5e+02 Score=16.80 Aligned_cols=14 Identities=14% Similarity=0.138 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHhhc
Q psy12189 42 IGLTLFVGVVIANY 55 (131)
Q Consensus 42 f~lnlfiavi~~~f 55 (131)
|.+-..+|.++.-.
T Consensus 28 f~~G~llg~l~~~~ 41 (68)
T PF06305_consen 28 FLLGALLGWLLSLP 41 (68)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555544433
No 27
>PF14384 DUF4415: Domain of unknown function (DUF4415)
Probab=23.87 E-value=51 Score=19.02 Aligned_cols=16 Identities=13% Similarity=-0.014 Sum_probs=12.8
Q ss_pred cccCCHHHHHHHHHHh
Q psy12189 8 LSFKGWLDVRDILKTQ 23 (131)
Q Consensus 8 ~t~egW~~im~~~~da 23 (131)
++++||+..|..++..
T Consensus 45 a~G~gyQtriN~~Lr~ 60 (62)
T PF14384_consen 45 AQGKGYQTRINEALRK 60 (62)
T ss_pred HHChhHHHHHHHHHHH
Confidence 3689999999888753
No 28
>PF14364 DUF4408: Domain of unknown function (DUF4408)
Probab=22.09 E-value=68 Score=16.41 Aligned_cols=13 Identities=15% Similarity=0.378 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHh
Q psy12189 41 MIGLTLFVGVVIA 53 (131)
Q Consensus 41 ff~lnlfiavi~~ 53 (131)
|+++|+.++.++.
T Consensus 18 fv~~N~IIi~i~~ 30 (34)
T PF14364_consen 18 FVIVNLIIITIVA 30 (34)
T ss_pred hhhhhhHHHHhhh
Confidence 4466766666653
No 29
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=21.44 E-value=2.7e+02 Score=25.75 Aligned_cols=63 Identities=19% Similarity=0.365 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhchhhhc---cccccHHHHHHHHHHhHHhhcCCCCCCCCCCcchHHHHHhhhccchhhHHHH
Q psy12189 43 GLTLFVGVVIANYSENKG---TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLI 112 (131)
Q Consensus 43 ~lnlfiavi~~~f~~~~~---~~~l~~~q~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~f~~~i 112 (131)
-+.=.+|++=+.|.+.-+ ....+++||+|.+.+-.. |.. +|+..-=++.+.++-.-..||.|.
T Consensus 447 ~LrdiL~~LRdsYcr~vg~EymhI~dpeqr~W~Q~rvE~----~~~---kp~~~eq~~iL~~LnaaEaFEtFL 512 (1228)
T PRK12270 447 KLRDILGVLRDSYCRTVGIEYMHIQDPEQRRWLQERVER----PHE---KPTREEQKRILSKLNAAEAFETFL 512 (1228)
T ss_pred cHHHHHHHHHHHHhhhheeeeeecCCHHHHHHHHHHhhC----CCC---CCCHHHHHHHHHHhhhHHHHHHHH
Confidence 344567888888887655 346799999999763332 221 122112344455555556666653
No 30
>PF09782 NDUF_B6: NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit; InterPro: IPR019174 The NADH dehydrogenase [ubiquinone] complex performs the first stage of electron transfer from NADH to the respiratory chain. This entry represents an accessory subunit that is not thought to be involved in catalysis [].
Probab=20.96 E-value=2e+02 Score=20.11 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=13.1
Q ss_pred cccHHHHHHHHHHhHHhhcCCC
Q psy12189 63 LLTVDQRRWCDLKKRLKIAQPL 84 (131)
Q Consensus 63 ~l~~~q~~~~~~~~~~~~~~p~ 84 (131)
-+|+++|+|.+.-=+.....|.
T Consensus 22 ~~tdeeRa~Rr~WLkDQ~Lsp~ 43 (156)
T PF09782_consen 22 QMTDEERAWRRQWLKDQELSPR 43 (156)
T ss_pred cCCHHHHHHHHHHHHhhccCCC
Confidence 3788888887654333344443
No 31
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=20.50 E-value=1.2e+02 Score=18.51 Aligned_cols=20 Identities=10% Similarity=0.426 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHhHhhh
Q psy12189 106 LWFKRLIAAVVLINSMLLIV 125 (131)
Q Consensus 106 ~~f~~~i~~~I~~N~i~m~~ 125 (131)
.++|.++++++++|.+.+-.
T Consensus 47 ~~WD~~m~~~~~~~~~~iP~ 66 (77)
T PF08412_consen 47 FYWDLIMLILLLYNLIIIPF 66 (77)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 35889999999999988654
Done!