Query psy12189
Match_columns 131
No_of_seqs 116 out of 1149
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 20:58:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12189.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12189hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4l_A ION transport protein; 99.7 4E-19 1.4E-23 116.6 -3.7 60 1-60 43-102 (112)
2 4dxw_A Navrh, ION transport pr 99.5 1.3E-14 4.4E-19 105.1 2.0 58 1-59 170-227 (229)
3 3rvy_A ION transport protein; 99.0 6.2E-11 2.1E-15 88.2 -0.4 58 2-60 186-244 (285)
4 1byy_A Protein (sodium channel 98.3 2.9E-07 1E-11 52.0 1.7 48 53-101 1-53 (53)
5 3rvy_A ION transport protein; 97.5 6.3E-05 2.2E-09 55.5 3.5 38 93-130 17-54 (285)
6 4djc_B Sodium channel protein 97.4 9.4E-05 3.2E-09 38.0 2.2 34 65-99 1-34 (35)
7 2r9r_B Paddle chimera voltage 95.8 0.016 5.5E-07 46.4 5.9 38 92-129 161-205 (514)
8 2kyh_A KVAP, voltage-gated pot 95.1 0.022 7.6E-07 38.2 3.9 38 93-130 8-45 (147)
9 2kav_A Sodium channel protein 93.5 0.039 1.3E-06 36.3 2.3 27 42-68 13-41 (129)
10 2r9r_B Paddle chimera voltage 93.0 0.011 3.8E-07 47.3 -1.1 30 29-58 402-431 (514)
11 3kdp_B Sodium/potassium-transp 29.9 34 0.0012 25.2 2.6 19 29-47 20-38 (286)
12 1ug8_A Poly(A)-specific ribonu 28.6 52 0.0018 19.8 2.8 20 88-107 34-53 (87)
13 2zxe_B Na+,K+-ATPase beta subu 24.6 66 0.0023 23.8 3.4 39 10-48 10-57 (305)
14 3beh_A MLL3241 protein; transm 23.2 80 0.0027 23.0 3.7 28 31-58 190-217 (355)
15 1qmy_A Protease, leader protea 23.0 30 0.001 23.0 1.1 13 3-15 121-133 (167)
16 1orq_C Potassium channel; volt 21.0 1.1E+02 0.0037 20.7 3.8 48 11-58 164-221 (223)
No 1
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=99.68 E-value=4e-19 Score=116.57 Aligned_cols=60 Identities=20% Similarity=0.393 Sum_probs=48.7
Q ss_pred CeeeEeecccCCHHHHHHHHHHhcCCceeehhhHHHHHHHHHHHHHHHHHHHhhchhhhc
Q psy12189 1 MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60 (131)
Q Consensus 1 ~ltlF~i~t~egW~~im~~~~da~~~~~~lyfi~~i~ig~ff~lnlfiavi~~~f~~~~~ 60 (131)
++|+||++|+|||.++|++.+.+.+|++++||++|+++|+|+++|||+||++++|++.++
T Consensus 43 ~ltLF~i~T~e~W~~~~~~~~~~~~~~a~iyFi~fi~i~~fi~lNLfiaVi~~~f~~~~~ 102 (112)
T 4f4l_A 43 LYTLFQVMTLESWSMGIVRPVMNVHPNAWVFFIPFIMLTTFTVLNLFIGIIVDAMAITKE 102 (112)
T ss_dssp HHHHHHHHTTTTCCCCCHHHHTTTSTTTHHHHHHHHHHHHHHHHHHHTTTC---------
T ss_pred HHHHHHHHHccccHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999888888999999999999999999999999999999987654
No 2
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=99.46 E-value=1.3e-14 Score=105.08 Aligned_cols=58 Identities=21% Similarity=0.375 Sum_probs=53.2
Q ss_pred CeeeEeecccCCHHHHHHHHHHhcCCceeehhhHHHHHHHHHHHHHHHHHHHhhchhhh
Q psy12189 1 MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENK 59 (131)
Q Consensus 1 ~ltlF~i~t~egW~~im~~~~da~~~~~~lyfi~~i~ig~ff~lnlfiavi~~~f~~~~ 59 (131)
++++|++.|+|||.|+|++++++ +|++.+||++|+++|+++++|||+|++++||++++
T Consensus 170 ~~~lf~~~t~~~w~~i~~~~~~~-~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~~~~ 227 (229)
T 4dxw_A 170 LITLFQVLTLSSWETVMLPMQEI-YWWSWVYFFSFIIICSITILNLVIAILVDVVIQKK 227 (229)
T ss_dssp HHHHHHHHTTSSTHHHHHHHHTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccCCHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36889999999999999999985 46788999999999999999999999999998764
No 3
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=98.95 E-value=6.2e-11 Score=88.16 Aligned_cols=58 Identities=17% Similarity=0.346 Sum_probs=49.1
Q ss_pred eeeEeecccCCHH-HHHHHHHHhcCCceeehhhHHHHHHHHHHHHHHHHHHHhhchhhhc
Q psy12189 2 LTLFEVLSFKGWL-DVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60 (131)
Q Consensus 2 ltlF~i~t~egW~-~im~~~~da~~~~~~lyfi~~i~ig~ff~lnlfiavi~~~f~~~~~ 60 (131)
.++|++.|.+||. |+||+..+. ||+...||++++++++++++|+++|++.++|++..+
T Consensus 186 ~~~~~~~T~~g~~~di~~p~~~~-~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 186 YTLFQVMTLESWSMGIVRPLMEV-YPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ 244 (285)
T ss_dssp HHHHHHHTTTTCCCCCHHHHHTT-CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHhCCCcHHHHHHHHHc-CChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999 999998764 788889999999999999999999999999987653
No 4
>1byy_A Protein (sodium channel alpha-subunit); membrane protein; NMR {Rattus norvegicus} SCOP: j.12.1.1
Probab=98.26 E-value=2.9e-07 Score=52.05 Aligned_cols=48 Identities=25% Similarity=0.559 Sum_probs=18.2
Q ss_pred hhchhhhc-----cccccHHHHHHHHHHhHHhhcCCCCCCCCCCcchHHHHHhh
Q psy12189 53 ANYSENKG-----TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYD 101 (131)
Q Consensus 53 ~~f~~~~~-----~~~l~~~q~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~ 101 (131)
|||++.++ ...||++|++|++..+.+...+|.+..++|. ++++..+|+
T Consensus 1 dnFn~~k~k~gg~~~fmT~~Qkk~y~amkkl~~~kP~k~i~rP~-nk~q~~v~d 53 (53)
T 1byy_A 1 DNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPA-NKFQGMVFD 53 (53)
T ss_dssp ------------CCSCCCHHHHHHHHHHHTSCC---------------------
T ss_pred CcHHHHHHHhcCCccccCHHHHHHHHHHHHHhccCCCCCCCCCc-hHHHHHhcC
Confidence 46765532 3578999999999999999999999998886 588888764
No 5
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=97.50 E-value=6.3e-05 Score=55.52 Aligned_cols=38 Identities=16% Similarity=0.357 Sum_probs=34.4
Q ss_pred chHHHHHhhhccchhhHHHHHHHHHHHHhHhhhhcCCC
Q psy12189 93 FKYRARIYDVTQNLWFKRLIAAVVLINSMLLIVSLAPT 130 (131)
Q Consensus 93 ~~~r~~~~~~~~~~~f~~~i~~~I~~N~i~m~~~~~~~ 130 (131)
+++|+.++++++|++|+.+++++|++|++.++++++++
T Consensus 17 ~~~r~~~~~i~~~~~f~~~i~~li~l~~i~~~~~~~~~ 54 (285)
T 3rvy_A 17 SHMYLRITNIVESSFFTKFIIYLIVLNGITMGLETSKT 54 (285)
T ss_dssp --CHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred hHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 46899999999999999999999999999999998873
No 6
>4djc_B Sodium channel protein type 5 subunit alpha; EF-hand, calcium-binding protein; 1.35A {Homo sapiens}
Probab=97.38 E-value=9.4e-05 Score=38.03 Aligned_cols=34 Identities=29% Similarity=0.486 Sum_probs=28.7
Q ss_pred cHHHHHHHHHHhHHhhcCCCCCCCCCCcchHHHHH
Q psy12189 65 TVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARI 99 (131)
Q Consensus 65 ~~~q~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~ 99 (131)
|++|+.|++..+.+...+|.+.+++|.+ +++..+
T Consensus 1 t~~Qkk~y~amkKl~~kkp~K~iprP~n-k~q~~~ 34 (35)
T 4djc_B 1 SNAQKKYYNAMKKLGSKKPQKPIPRPLN-KYQGFI 34 (35)
T ss_pred CHhHHHHHHHHHHHcccCCCCCcCCCCC-ccceee
Confidence 6899999999999999999999998874 766543
No 7
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=95.80 E-value=0.016 Score=46.36 Aligned_cols=38 Identities=11% Similarity=0.207 Sum_probs=34.5
Q ss_pred cchHHHHHhhhccc-------hhhHHHHHHHHHHHHhHhhhhcCC
Q psy12189 92 AFKYRARIYDVTQN-------LWFKRLIAAVVLINSMLLIVSLAP 129 (131)
Q Consensus 92 ~~~~r~~~~~~~~~-------~~f~~~i~~~I~~N~i~m~~~~~~ 129 (131)
.+++|+.+|.++.+ +.|+.+++++|++|++++++|+++
T Consensus 161 ~~~~r~~lw~l~e~p~sS~~a~~f~~~~i~~Illsii~~~leT~p 205 (514)
T 2r9r_B 161 ENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLP 205 (514)
T ss_dssp SCSSHHHHHHTTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 36899999999987 689999999999999999999875
No 8
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=95.11 E-value=0.022 Score=38.20 Aligned_cols=38 Identities=13% Similarity=0.104 Sum_probs=34.9
Q ss_pred chHHHHHhhhccchhhHHHHHHHHHHHHhHhhhhcCCC
Q psy12189 93 FKYRARIYDVTQNLWFKRLIAAVVLINSMLLIVSLAPT 130 (131)
Q Consensus 93 ~~~r~~~~~~~~~~~f~~~i~~~I~~N~i~m~~~~~~~ 130 (131)
+.+|+.++++++++.|+.++.++|++|++.+.+|++++
T Consensus 8 ~~~~~~~~~~~e~~~f~~~i~~lil~sv~~v~~et~~~ 45 (147)
T 2kyh_A 8 GGRVRNIGDVMEHPLVELGVSYAALLSVIVVVVEYTMQ 45 (147)
T ss_dssp SHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhHh
Confidence 57999999999999999999999999999999987654
No 9
>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium channel, alternative splicing, disease epilepsy, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kbi_A
Probab=93.50 E-value=0.039 Score=36.35 Aligned_cols=27 Identities=15% Similarity=-0.021 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhhchhhhcc--ccccHHH
Q psy12189 42 IGLTLFVGVVIANYSENKGT--ALLTVDQ 68 (131)
Q Consensus 42 f~lnlfiavi~~~f~~~~~~--~~l~~~q 68 (131)
-++|||||||++||+...+. ..+++++
T Consensus 13 ~~LNLfIAVIlenF~~~~~~~~~~l~~~d 41 (129)
T 2kav_A 13 GLVPRGSHMASENFSVATEESAEPLSEDD 41 (129)
T ss_dssp -----------CCSCCTTSSCSCSSCHHH
T ss_pred chhheeeeeeeccHHHHHHhhccCCCHHH
Confidence 47999999999999875432 2355554
No 10
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=93.04 E-value=0.011 Score=47.27 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=25.9
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHhhchhh
Q psy12189 29 VIYIHVYIFLGCMIGLTLFVGVVIANYSEN 58 (131)
Q Consensus 29 ~lyfi~~i~ig~ff~lnlfiavi~~~f~~~ 58 (131)
.-+|++++++++++++|+++|++.++|++.
T Consensus 402 gr~f~~~~~l~G~~~l~l~iavI~~~f~~~ 431 (514)
T 2r9r_B 402 GKIVGSLCAIAGVLTIALPVPVIVSNFNYF 431 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred hHhhehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888999999999999999865
No 11
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=29.89 E-value=34 Score=25.18 Aligned_cols=19 Identities=21% Similarity=0.245 Sum_probs=13.4
Q ss_pred eehhhHHHHHHHHHHHHHH
Q psy12189 29 VIYIHVYIFLGCMIGLTLF 47 (131)
Q Consensus 29 ~lyfi~~i~ig~ff~lnlf 47 (131)
.+|.+.+.+++++|.+.|.
T Consensus 20 lFYliFY~~La~lFa~~m~ 38 (286)
T 3kdp_B 20 LFYVIFYGCLAGIFIGTIQ 38 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566677788888866665
No 12
>1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1
Probab=28.59 E-value=52 Score=19.80 Aligned_cols=20 Identities=20% Similarity=0.074 Sum_probs=14.7
Q ss_pred CCCCcchHHHHHhhhccchh
Q psy12189 88 PRPDAFKYRARIYDVTQNLW 107 (131)
Q Consensus 88 ~~~~~~~~r~~~~~~~~~~~ 107 (131)
-.|.++..|+++|.-+.++|
T Consensus 34 l~pCN~f~RkLIYQ~~~~kf 53 (87)
T 1ug8_A 34 LDPCTGFQRKLIYQTLSWKY 53 (87)
T ss_dssp CCCCCSHHHHHHHHHHHHHS
T ss_pred cCCchHHHHHHHHHHHHHhc
Confidence 34667788999998876543
No 13
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B*
Probab=24.57 E-value=66 Score=23.85 Aligned_cols=39 Identities=21% Similarity=0.180 Sum_probs=15.3
Q ss_pred cCCHHHHHHHHHHhc--C----Cc---eeehhhHHHHHHHHHHHHHHH
Q psy12189 10 FKGWLDVRDILKTQL--G----DA---HVIYIHVYIFLGCMIGLTLFV 48 (131)
Q Consensus 10 ~egW~~im~~~~da~--~----~~---~~lyfi~~i~ig~ff~lnlfi 48 (131)
.++|...+|+.-... | .| ..+|.+.+.+++++|...|.+
T Consensus 10 ~~~~k~f~~n~~~~~~lGRT~~sW~~IllFYliFY~~La~lF~~~m~v 57 (305)
T 2zxe_B 10 DGGWKKFLWDSEKKEFLGRTGSSWFKIFLFYLIFYGCLAGIFIGTIQV 57 (305)
T ss_dssp ------------------CCSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhheeCcccCeEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888777655432 2 23 245567777888888777664
No 14
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=23.23 E-value=80 Score=23.05 Aligned_cols=28 Identities=7% Similarity=0.250 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhchhh
Q psy12189 31 YIHVYIFLGCMIGLTLFVGVVIANYSEN 58 (131)
Q Consensus 31 yfi~~i~ig~ff~lnlfiavi~~~f~~~ 58 (131)
.+..++.+.+..+.++++|++.+++.+.
T Consensus 190 ~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 217 (355)
T 3beh_A 190 VLAGAVMMSGIGIFGLWAGILATGFYQE 217 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677889999999999999764
No 15
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=23.03 E-value=30 Score=23.04 Aligned_cols=13 Identities=23% Similarity=0.800 Sum_probs=10.8
Q ss_pred eeEeecccCCHHH
Q psy12189 3 TLFEVLSFKGWLD 15 (131)
Q Consensus 3 tlF~i~t~egW~~ 15 (131)
.+|-+.|.+||..
T Consensus 121 AVFa~~TS~GWya 133 (167)
T 1qmy_A 121 AVFACVTSNGWYA 133 (167)
T ss_dssp EEEEECCTTSSEE
T ss_pred eEEEEEccCceEE
Confidence 5789999999964
No 16
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=20.98 E-value=1.1e+02 Score=20.70 Aligned_cols=48 Identities=23% Similarity=0.219 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHhc---C-----Cce--eehhhHHHHHHHHHHHHHHHHHHHhhchhh
Q psy12189 11 KGWLDVRDILKTQL---G-----DAH--VIYIHVYIFLGCMIGLTLFVGVVIANYSEN 58 (131)
Q Consensus 11 egW~~im~~~~da~---~-----~~~--~lyfi~~i~ig~ff~lnlfiavi~~~f~~~ 58 (131)
.++.|-+|-++-.. | |.. .-.+..+..+.+..+.++++|.+.+.+++.
T Consensus 164 ~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~~ 221 (223)
T 1orq_C 164 KSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQKI 221 (223)
T ss_dssp CSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666666555432 2 322 224555666666778999999999988764
Done!