Query psy12189
Match_columns 131
No_of_seqs 116 out of 1149
Neff 8.3
Searched_HMMs 13730
Date Fri Aug 16 20:58:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12189.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12189hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ug8a_ d.68.7.1 (A:) Poly(A)- 23.0 33 0.0024 19.2 2.7 20 88-107 34-53 (87)
2 d1rrza_ a.7.10.1 (A:) Glycogen 18.5 33 0.0024 17.9 1.8 13 62-74 35-47 (66)
3 d1iu4a_ d.3.1.8 (A:) Microbial 14.2 40 0.0029 22.4 1.9 12 61-72 49-60 (331)
4 d1wpga4 f.33.1.1 (A:1-124,A:24 14.2 1.9E+02 0.014 20.3 5.9 24 78-101 33-56 (472)
5 d1ppjw_ f.23.14.1 (W:) Subunit 13.5 51 0.0037 17.1 1.8 14 32-45 20-33 (62)
6 d3cx5i1 f.23.14.1 (I:4-58) Sub 13.1 48 0.0035 16.8 1.6 12 32-43 14-25 (55)
7 d1q8ca_ a.79.1.2 (A:) Hypothet 9.4 78 0.0057 18.3 1.9 16 116-131 111-126 (140)
8 d1xl4a2 f.14.1.1 (A:23-138) In 9.1 1.5E+02 0.011 16.3 3.2 26 32-57 90-115 (116)
9 d1p7ba2 f.14.1.1 (A:36-151) In 8.6 1.7E+02 0.012 16.1 3.3 47 11-57 60-116 (116)
10 d1pbya1 a.3.1.7 (A:1-85) Quino 7.7 58 0.0043 17.7 0.7 17 8-24 31-47 (85)
No 1
>d1ug8a_ d.68.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.03 E-value=33 Score=19.22 Aligned_cols=20 Identities=20% Similarity=0.074 Sum_probs=14.7
Q ss_pred CCCCcchHHHHHhhhccchh
Q psy12189 88 PRPDAFKYRARIYDVTQNLW 107 (131)
Q Consensus 88 ~~~~~~~~r~~~~~~~~~~~ 107 (131)
..|.+...|+++|..+..++
T Consensus 34 lepCngFqRKLIYQtl~~kf 53 (87)
T d1ug8a_ 34 LDPCTGFQRKLIYQTLSWKY 53 (87)
T ss_dssp CCCCCSHHHHHHHHHHHHHS
T ss_pred cCCCcHHHHHHHHHHHHHhC
Confidence 34666788999998876543
No 2
>d1rrza_ a.7.10.1 (A:) Glycogen synthesis protein GlgS {Escherichia coli [TaxId: 562]}
Probab=18.51 E-value=33 Score=17.86 Aligned_cols=13 Identities=15% Similarity=0.406 Sum_probs=10.6
Q ss_pred ccccHHHHHHHHH
Q psy12189 62 ALLTVDQRRWCDL 74 (131)
Q Consensus 62 ~~l~~~q~~~~~~ 74 (131)
..|+++|+.|...
T Consensus 35 GNMdee~r~WFc~ 47 (66)
T d1rrza_ 35 GNMDEEHRTWFCA 47 (66)
T ss_dssp HHCCHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 3689999999764
No 3
>d1iu4a_ d.3.1.8 (A:) Microbial transglutaminase {Streptoverticillium mobaraense [TaxId: 35621]}
Probab=14.18 E-value=40 Score=22.39 Aligned_cols=12 Identities=33% Similarity=0.692 Sum_probs=9.8
Q ss_pred cccccHHHHHHH
Q psy12189 61 TALLTVDQRRWC 72 (131)
Q Consensus 61 ~~~l~~~q~~~~ 72 (131)
+..||||||+|+
T Consensus 49 kqqmteeqre~l 60 (331)
T d1iu4a_ 49 KQQMTEEQREWL 60 (331)
T ss_dssp CCCCCHHHHHHH
T ss_pred hhhccHHHHhhc
Confidence 457999999975
No 4
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=14.15 E-value=1.9e+02 Score=20.32 Aligned_cols=24 Identities=17% Similarity=0.090 Sum_probs=10.6
Q ss_pred HhhcCCCCCCCCCCcchHHHHHhh
Q psy12189 78 LKIAQPLHLPPRPDAFKYRARIYD 101 (131)
Q Consensus 78 ~~~~~p~~~~~~~~~~~~r~~~~~ 101 (131)
++.-.|...+.+|+.+.++.....
T Consensus 33 ~~~~G~N~l~~~~~~s~~~~~~~~ 56 (472)
T d1wpga4 33 LEKYGHNELPAEEGKSLWELVIEQ 56 (472)
T ss_dssp HHHSCCSSCCCCCCCCHHHHHHHH
T ss_pred HHhcCCCCCCCCCCCCHHHHHHHH
Confidence 333344444433433455554443
No 5
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.51 E-value=51 Score=17.14 Aligned_cols=14 Identities=14% Similarity=0.209 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHH
Q psy12189 32 IHVYIFLGCMIGLT 45 (131)
Q Consensus 32 fi~~i~ig~ff~ln 45 (131)
|+..|+.|+|+.=-
T Consensus 20 f~~tI~~gAf~fE~ 33 (62)
T d1ppjw_ 20 FALTIVVGALFFER 33 (62)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67788888886433
No 6
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.13 E-value=48 Score=16.81 Aligned_cols=12 Identities=25% Similarity=0.285 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHH
Q psy12189 32 IHVYIFLGCMIG 43 (131)
Q Consensus 32 fi~~i~ig~ff~ 43 (131)
|+..|+.|+|+.
T Consensus 14 ~~~tI~~gAf~f 25 (55)
T d3cx5i1 14 FVGTIFAGAFVF 25 (55)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 667888888864
No 7
>d1q8ca_ a.79.1.2 (A:) Hypothetical protein MG027 {Mycoplasma genitalium [TaxId: 2097]}
Probab=9.43 E-value=78 Score=18.30 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=12.2
Q ss_pred HHHHHhHhhhhcCCCC
Q psy12189 116 VLINSMLLIVSLAPTV 131 (131)
Q Consensus 116 I~~N~i~m~~~~~~~~ 131 (131)
.+++-.++.|+||.|+
T Consensus 111 lliseallimdhysq~ 126 (140)
T d1q8ca_ 111 LLISEALLIMDHYSQG 126 (140)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred hhHHHHHHHHHHHhhc
Confidence 4566777889999875
No 8
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}
Probab=9.09 E-value=1.5e+02 Score=16.32 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhchh
Q psy12189 32 IHVYIFLGCMIGLTLFVGVVIANYSE 57 (131)
Q Consensus 32 fi~~i~ig~ff~lnlfiavi~~~f~~ 57 (131)
+..+..+.+..+.-+.+|++..+|++
T Consensus 90 ~~~~~~~~G~~~~a~~~g~i~~~fsr 115 (116)
T d1xl4a2 90 LVTLEALCGMLGLAVAASLIYARFTR 115 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444444556677888998888764
No 9
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Probab=8.56 E-value=1.7e+02 Score=16.14 Aligned_cols=47 Identities=21% Similarity=0.286 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHhc---C-----Cce--eehhhHHHHHHHHHHHHHHHHHHHhhchh
Q psy12189 11 KGWLDVRDILKTQL---G-----DAH--VIYIHVYIFLGCMIGLTLFVGVVIANYSE 57 (131)
Q Consensus 11 egW~~im~~~~da~---~-----~~~--~lyfi~~i~ig~ff~lnlfiavi~~~f~~ 57 (131)
++|.|-+|-++-.. | |.. .-.+..+..+.+..+.-+.+|++..+|++
T Consensus 60 ~~~~~a~yfs~~T~tTvGYGDi~P~t~~~~~~~~~~~~~g~~~~a~~~g~i~~~~sR 116 (116)
T d1p7ba2 60 PGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFAR 116 (116)
T ss_dssp SSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46777777666543 2 332 22344444445566677888988887753
No 10
>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}
Probab=7.67 E-value=58 Score=17.75 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=10.4
Q ss_pred cccCCHHHHHHHHHHhc
Q psy12189 8 LSFKGWLDVRDILKTQL 24 (131)
Q Consensus 8 ~t~egW~~im~~~~da~ 24 (131)
.|.+||.+....-++..
T Consensus 31 ~t~~~W~~~V~~M~~~~ 47 (85)
T d1pbya1 31 KTPEGWDMTVTRMMRNH 47 (85)
T ss_dssp ECHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHc
Confidence 46677887765554443
Done!