RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12189
         (131 letters)



>d3cnva1 d.190.1.2 (A:98-259) Putative transcriptional regulator
           BB3683 {Bordetella bronchiseptica [TaxId: 518]}
          Length = 162

 Score = 23.6 bits (50), Expect = 9.8
 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 58  NKGTALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARI 99
             G  LL VD+  +    + +++ + L+     D + YR  +
Sbjct: 123 EPGRPLLQVDRISYTYGDRPMEVRRGLY---LTDHYHYRNSL 161


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.144    0.449 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 500,088
Number of extensions: 21424
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 1
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 48 (22.8 bits)