Query psy12190
Match_columns 105
No_of_seqs 147 out of 1227
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 21:00:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12190.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12190hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0390|consensus 100.0 5.6E-33 1.2E-37 209.6 10.4 103 1-103 622-725 (776)
2 KOG0392|consensus 100.0 4.1E-33 8.9E-38 215.1 8.8 104 1-104 1370-1473(1549)
3 KOG0387|consensus 100.0 2E-32 4.4E-37 205.0 9.1 104 1-104 574-677 (923)
4 PLN03142 Probable chromatin-re 100.0 3.7E-31 8E-36 205.8 9.7 102 1-102 514-616 (1033)
5 KOG0385|consensus 100.0 7.4E-31 1.6E-35 196.4 10.5 102 1-102 514-616 (971)
6 KOG0389|consensus 100.0 3.1E-30 6.8E-35 193.3 10.5 102 1-102 804-905 (941)
7 KOG0384|consensus 100.0 3.1E-29 6.7E-34 193.9 10.9 101 1-101 726-827 (1373)
8 KOG1002|consensus 100.0 1.4E-28 3E-33 178.4 10.0 103 2-104 666-768 (791)
9 KOG0391|consensus 100.0 2.1E-28 4.6E-33 188.9 10.2 100 1-100 1303-1402(1958)
10 KOG0388|consensus 99.9 4.6E-27 1E-31 175.6 9.6 101 1-102 1071-1171(1185)
11 KOG1015|consensus 99.9 7.7E-27 1.7E-31 178.0 8.6 104 1-104 1191-1296(1567)
12 KOG1000|consensus 99.9 1.9E-26 4.1E-31 167.0 8.1 104 1-104 519-622 (689)
13 KOG4439|consensus 99.9 4.7E-26 1E-30 169.6 9.5 104 1-104 773-877 (901)
14 COG0553 HepA Superfamily II DN 99.9 1E-25 2.2E-30 173.1 9.1 103 1-103 738-840 (866)
15 PRK04914 ATP-dependent helicas 99.9 2.7E-25 5.8E-30 172.6 9.9 102 2-104 522-624 (956)
16 KOG0386|consensus 99.9 3.1E-23 6.7E-28 158.8 8.5 104 1-104 753-857 (1157)
17 KOG1001|consensus 99.9 3E-24 6.5E-29 162.1 -1.8 103 1-103 566-668 (674)
18 KOG1016|consensus 99.9 9.3E-22 2E-26 148.6 6.9 105 1-105 764-869 (1387)
19 PF00271 Helicase_C: Helicase 99.8 2.3E-19 5E-24 102.3 4.0 68 2-71 11-78 (78)
20 smart00490 HELICc helicase sup 99.7 4.1E-17 8.9E-22 92.7 6.2 68 2-71 15-82 (82)
21 cd00079 HELICc Helicase superf 99.7 5.6E-17 1.2E-21 99.5 5.8 76 2-79 56-131 (131)
22 TIGR00603 rad25 DNA repair hel 99.7 3E-16 6.5E-21 119.7 10.3 92 3-95 520-617 (732)
23 PRK13766 Hef nuclease; Provisi 99.7 6.6E-16 1.4E-20 119.0 9.4 89 8-101 407-495 (773)
24 KOG0298|consensus 99.5 6E-15 1.3E-19 115.9 2.7 88 12-102 1256-1343(1394)
25 PTZ00110 helicase; Provisional 99.5 1.5E-13 3.2E-18 102.9 8.7 80 2-85 405-484 (545)
26 PLN00206 DEAD-box ATP-dependen 99.5 1.2E-13 2.5E-18 102.8 7.8 80 2-85 396-475 (518)
27 COG1111 MPH1 ERCC4-like helica 99.5 2.2E-13 4.7E-18 99.6 8.2 92 6-102 407-498 (542)
28 PRK04837 ATP-dependent RNA hel 99.5 8.9E-14 1.9E-18 101.0 6.2 80 2-85 283-362 (423)
29 TIGR00614 recQ_fam ATP-depende 99.5 1.9E-13 4.2E-18 100.6 7.7 76 2-79 254-329 (470)
30 KOG0331|consensus 99.5 2.6E-13 5.7E-18 100.1 7.7 95 2-98 369-463 (519)
31 PRK10590 ATP-dependent RNA hel 99.4 2.2E-13 4.7E-18 100.0 6.9 89 2-96 273-361 (456)
32 PRK11192 ATP-dependent RNA hel 99.4 2.7E-13 5.9E-18 98.7 7.2 75 2-78 273-347 (434)
33 PHA02558 uvsW UvsW helicase; P 99.4 8.2E-13 1.8E-17 98.0 9.0 84 2-86 372-456 (501)
34 PRK11776 ATP-dependent RNA hel 99.4 4E-13 8.7E-18 98.5 7.3 80 2-85 270-349 (460)
35 COG0513 SrmB Superfamily II DN 99.4 6.1E-13 1.3E-17 99.0 8.1 92 2-98 301-392 (513)
36 PRK01297 ATP-dependent RNA hel 99.4 1.2E-12 2.6E-17 96.4 9.2 88 2-95 363-450 (475)
37 KOG0328|consensus 99.4 9.5E-13 2.1E-17 91.1 7.7 80 2-85 294-373 (400)
38 PTZ00424 helicase 45; Provisio 99.4 8.7E-13 1.9E-17 94.8 7.9 90 2-97 295-384 (401)
39 KOG0330|consensus 99.4 9.9E-13 2.1E-17 93.9 7.2 79 2-84 328-406 (476)
40 PRK04537 ATP-dependent RNA hel 99.4 1.3E-12 2.8E-17 98.3 7.5 73 2-76 285-357 (572)
41 PRK11057 ATP-dependent DNA hel 99.4 1.7E-12 3.7E-17 98.3 8.1 73 2-76 264-336 (607)
42 TIGR01389 recQ ATP-dependent D 99.4 2.6E-12 5.7E-17 96.8 7.6 74 2-77 252-325 (591)
43 PLN03137 ATP-dependent DNA hel 99.4 2.5E-12 5.4E-17 101.7 7.7 77 2-80 708-784 (1195)
44 KOG0348|consensus 99.3 4.7E-12 1E-16 93.5 8.2 78 1-80 474-551 (708)
45 PRK11634 ATP-dependent RNA hel 99.3 1.2E-11 2.5E-16 94.1 9.6 74 2-77 273-346 (629)
46 KOG0333|consensus 99.3 9.5E-12 2.1E-16 91.7 7.9 74 2-77 545-618 (673)
47 TIGR03817 DECH_helic helicase/ 99.3 2E-11 4.3E-16 94.3 8.2 89 3-95 308-396 (742)
48 KOG0335|consensus 99.2 7.8E-11 1.7E-15 86.3 7.9 94 1-96 364-457 (482)
49 PF13871 Helicase_C_4: Helicas 99.2 9.1E-11 2E-15 81.2 7.5 88 15-104 52-147 (278)
50 KOG0345|consensus 99.2 6.4E-11 1.4E-15 86.4 6.4 76 2-79 285-360 (567)
51 KOG0336|consensus 99.2 1.1E-10 2.3E-15 84.4 6.9 91 3-97 494-586 (629)
52 TIGR00643 recG ATP-dependent D 99.2 3.4E-10 7.4E-15 86.2 9.9 75 2-78 486-561 (630)
53 KOG0332|consensus 99.2 2.3E-10 5.1E-15 81.6 8.2 82 3-88 359-447 (477)
54 PRK13767 ATP-dependent helicas 99.1 3.2E-10 6.9E-15 89.0 9.5 76 3-80 319-395 (876)
55 PRK10917 ATP-dependent DNA hel 99.1 5.3E-10 1.2E-14 85.8 10.0 73 2-76 509-582 (681)
56 COG1061 SSL2 DNA or RNA helica 99.1 3.9E-10 8.5E-15 82.8 8.7 91 3-95 311-404 (442)
57 TIGR01587 cas3_core CRISPR-ass 99.1 8.1E-10 1.8E-14 78.5 8.9 92 2-98 252-354 (358)
58 KOG0342|consensus 99.1 1.2E-10 2.6E-15 85.2 4.6 69 3-73 359-427 (543)
59 KOG0341|consensus 99.1 2.3E-10 4.9E-15 82.4 5.9 86 2-91 449-534 (610)
60 COG0514 RecQ Superfamily II DN 99.1 1.1E-09 2.4E-14 82.4 9.5 75 2-78 258-332 (590)
61 KOG0344|consensus 99.1 3.4E-10 7.4E-15 84.1 6.6 75 3-79 417-492 (593)
62 TIGR00580 mfd transcription-re 99.1 1.1E-09 2.4E-14 86.3 9.5 79 2-84 690-769 (926)
63 KOG0350|consensus 99.0 7.6E-10 1.6E-14 81.4 6.7 89 4-98 463-551 (620)
64 KOG0343|consensus 99.0 1.4E-09 3.1E-14 80.9 7.8 93 2-99 343-435 (758)
65 PRK10689 transcription-repair 99.0 1.9E-09 4.2E-14 86.5 8.9 77 2-82 839-916 (1147)
66 KOG0326|consensus 99.0 5.3E-10 1.2E-14 78.7 4.6 68 4-73 352-419 (459)
67 KOG0340|consensus 99.0 2E-09 4.3E-14 76.5 7.0 76 2-79 282-358 (442)
68 PRK02362 ski2-like helicase; P 99.0 2.9E-09 6.3E-14 82.3 8.4 80 3-84 308-396 (737)
69 KOG0338|consensus 98.9 2E-09 4.4E-14 79.5 6.3 86 3-94 455-540 (691)
70 KOG1123|consensus 98.9 7.4E-09 1.6E-13 76.7 8.9 87 4-91 568-659 (776)
71 KOG0354|consensus 98.9 7.1E-09 1.5E-13 79.4 8.1 70 7-79 457-526 (746)
72 PRK09751 putative ATP-dependen 98.9 6.8E-09 1.5E-13 84.7 8.2 66 3-70 306-371 (1490)
73 KOG0327|consensus 98.9 8E-09 1.7E-13 73.7 7.1 87 2-94 291-377 (397)
74 PRK01172 ski2-like helicase; P 98.8 3.1E-08 6.7E-13 76.0 8.8 72 3-77 290-370 (674)
75 KOG0347|consensus 98.8 5E-09 1.1E-13 78.0 4.3 69 3-73 492-560 (731)
76 PRK00254 ski2-like helicase; P 98.8 2E-08 4.4E-13 77.6 7.6 82 3-86 300-389 (720)
77 TIGR00631 uvrb excinuclease AB 98.8 4.2E-08 9.1E-13 75.2 8.6 87 3-94 471-564 (655)
78 TIGR01970 DEAH_box_HrpB ATP-de 98.8 1.6E-08 3.5E-13 79.0 5.8 79 2-85 240-336 (819)
79 KOG4284|consensus 98.8 4E-08 8.8E-13 74.6 7.6 78 4-84 302-379 (980)
80 PRK05298 excinuclease ABC subu 98.7 1.5E-07 3.3E-12 72.2 10.1 77 3-84 475-556 (652)
81 TIGR02621 cas3_GSU0051 CRISPR- 98.7 3.6E-08 7.9E-13 76.9 6.6 76 2-81 298-390 (844)
82 PRK11448 hsdR type I restricti 98.7 5E-08 1.1E-12 78.4 7.5 77 3-82 736-815 (1123)
83 PRK11664 ATP-dependent RNA hel 98.6 7.4E-08 1.6E-12 75.4 4.9 79 2-85 243-339 (812)
84 PRK09200 preprotein translocas 98.6 2E-07 4.3E-12 72.6 6.5 71 2-76 456-534 (790)
85 KOG0349|consensus 98.5 2.1E-07 4.7E-12 68.2 6.1 67 3-71 537-603 (725)
86 KOG0351|consensus 98.5 1.5E-07 3.2E-12 74.3 5.6 79 3-83 514-592 (941)
87 KOG0339|consensus 98.5 1.7E-07 3.7E-12 69.6 5.5 83 2-88 496-578 (731)
88 PRK12898 secA preprotein trans 98.5 2.9E-07 6.2E-12 70.4 6.7 71 2-76 501-579 (656)
89 KOG0953|consensus 98.5 2.8E-07 6E-12 69.0 6.1 81 2-84 385-476 (700)
90 COG1200 RecG RecG-like helicas 98.5 8.5E-07 1.9E-11 67.6 8.0 72 3-76 512-584 (677)
91 TIGR00963 secA preprotein tran 98.5 6.8E-07 1.5E-11 69.1 7.1 72 3-78 434-512 (745)
92 PHA02653 RNA helicase NPH-II; 98.4 8.6E-07 1.9E-11 68.3 7.3 81 2-88 425-517 (675)
93 TIGR01967 DEAH_box_HrpA ATP-de 98.4 5.8E-07 1.2E-11 72.9 5.2 77 2-85 310-404 (1283)
94 KOG0334|consensus 98.3 1.2E-06 2.6E-11 69.0 6.1 75 3-79 642-716 (997)
95 KOG0352|consensus 98.2 1.5E-06 3.2E-11 63.7 4.2 78 3-82 284-361 (641)
96 PRK12906 secA preprotein trans 98.2 3.9E-06 8.5E-11 65.5 6.2 71 3-77 469-547 (796)
97 TIGR03714 secA2 accessory Sec 98.2 3.9E-06 8.4E-11 65.3 6.2 71 2-77 452-531 (762)
98 COG1202 Superfamily II helicas 98.2 3.2E-06 7E-11 63.9 4.7 92 3-97 469-574 (830)
99 KOG0346|consensus 98.1 5.2E-06 1.1E-10 60.9 5.2 77 2-79 296-406 (569)
100 TIGR00595 priA primosomal prot 98.1 1.1E-05 2.5E-10 60.3 6.9 81 2-84 288-382 (505)
101 PRK05580 primosome assembly pr 98.1 2.1E-05 4.6E-10 60.8 8.3 80 2-83 456-549 (679)
102 KOG0337|consensus 98.1 2.3E-06 5E-11 62.4 2.6 79 3-85 290-368 (529)
103 COG1201 Lhr Lhr-like helicases 98.1 2.3E-05 5.1E-10 61.4 7.8 67 4-72 284-351 (814)
104 COG1197 Mfd Transcription-repa 98.1 3.1E-05 6.7E-10 62.2 8.5 79 2-84 833-912 (1139)
105 COG1203 CRISPR-associated heli 98.0 3.6E-05 7.7E-10 60.0 8.1 95 2-100 468-567 (733)
106 PRK11131 ATP-dependent RNA hel 97.9 1.7E-05 3.7E-10 64.7 5.3 77 2-85 317-411 (1294)
107 PRK09694 helicase Cas3; Provis 97.9 3.8E-05 8.2E-10 60.9 6.4 69 2-73 591-665 (878)
108 PRK12900 secA preprotein trans 97.8 4.8E-05 1E-09 60.6 6.2 66 9-76 631-704 (1025)
109 TIGR03158 cas3_cyano CRISPR-as 97.7 6.3E-05 1.4E-09 54.0 4.0 56 2-68 302-357 (357)
110 KOG1513|consensus 97.6 0.00014 3E-09 57.1 5.5 83 17-101 850-940 (1300)
111 TIGR00348 hsdR type I site-spe 97.5 0.00057 1.2E-08 53.0 7.3 69 13-83 579-649 (667)
112 PRK09401 reverse gyrase; Revie 97.4 0.00042 9.1E-09 56.7 6.3 63 3-71 360-432 (1176)
113 PRK12904 preprotein translocas 97.3 0.00077 1.7E-08 53.2 6.7 74 3-80 459-570 (830)
114 COG1205 Distinct helicase fami 97.3 0.00049 1.1E-08 54.7 5.2 87 3-93 343-430 (851)
115 PRK14701 reverse gyrase; Provi 97.3 0.00064 1.4E-08 57.1 6.0 61 12-73 366-446 (1638)
116 KOG0329|consensus 97.3 0.00013 2.8E-09 50.7 1.5 45 30-74 302-346 (387)
117 COG4098 comFA Superfamily II D 97.3 0.0021 4.5E-08 46.4 7.4 76 11-88 342-419 (441)
118 COG1204 Superfamily II helicas 97.2 0.00033 7.2E-09 55.0 3.7 68 5-74 321-397 (766)
119 COG4889 Predicted helicase [Ge 97.2 0.00053 1.1E-08 54.6 4.6 80 3-82 504-585 (1518)
120 PRK13104 secA preprotein trans 97.1 0.0018 3.8E-08 51.6 6.2 75 2-80 472-584 (896)
121 PRK13107 preprotein translocas 97.0 0.0016 3.5E-08 51.8 5.7 75 2-80 477-588 (908)
122 TIGR01054 rgy reverse gyrase. 97.0 0.0018 3.8E-08 53.1 5.7 48 3-55 358-409 (1171)
123 COG0556 UvrB Helicase subunit 97.0 0.0059 1.3E-07 46.3 7.9 93 3-98 475-572 (663)
124 KOG0949|consensus 97.0 0.0016 3.5E-08 52.2 5.1 75 5-81 969-1044(1330)
125 PF13307 Helicase_C_2: Helicas 97.0 0.0025 5.4E-08 41.1 5.2 64 10-75 45-142 (167)
126 KOG0952|consensus 96.9 0.0053 1.1E-07 49.6 7.3 78 5-84 403-490 (1230)
127 KOG0353|consensus 96.9 0.00087 1.9E-08 49.0 2.7 78 4-83 347-467 (695)
128 KOG4150|consensus 96.9 0.0045 9.7E-08 47.6 6.4 69 3-73 562-630 (1034)
129 KOG0922|consensus 96.8 0.0037 8E-08 48.1 5.8 85 2-88 294-393 (674)
130 COG4096 HsdR Type I site-speci 96.5 0.0053 1.1E-07 48.4 4.6 78 3-82 460-545 (875)
131 smart00491 HELICc2 helicase su 96.4 0.021 4.5E-07 36.1 6.3 45 11-55 31-80 (142)
132 PRK08074 bifunctional ATP-depe 96.2 0.021 4.6E-07 46.0 7.0 64 11-76 791-886 (928)
133 TIGR00596 rad1 DNA repair prot 96.1 0.027 5.9E-07 44.8 7.1 52 46-100 478-529 (814)
134 TIGR01407 dinG_rel DnaQ family 96.1 0.025 5.5E-07 45.1 6.9 64 11-76 712-807 (850)
135 smart00492 HELICc3 helicase su 95.9 0.06 1.3E-06 33.9 6.8 47 8-55 31-79 (141)
136 TIGR00604 rad3 DNA repair heli 95.4 0.049 1.1E-06 42.6 5.9 45 11-55 565-615 (705)
137 COG1198 PriA Primosomal protei 95.4 0.11 2.5E-06 40.9 7.7 81 2-84 510-604 (730)
138 KOG0950|consensus 95.3 0.025 5.4E-07 45.4 4.0 66 5-73 529-599 (1008)
139 KOG0383|consensus 95.3 0.011 2.5E-07 46.0 2.1 39 1-39 657-696 (696)
140 COG1199 DinG Rad3-related DNA 95.2 0.041 8.9E-07 42.5 4.9 44 12-56 515-560 (654)
141 KOG0926|consensus 95.1 0.019 4E-07 45.8 2.6 75 4-83 610-702 (1172)
142 PRK12903 secA preprotein trans 95.1 0.037 8.1E-07 44.3 4.3 52 29-80 477-536 (925)
143 KOG0947|consensus 95.0 0.12 2.7E-06 42.0 7.0 76 5-83 637-721 (1248)
144 KOG0923|consensus 94.7 0.058 1.3E-06 42.2 4.4 75 2-83 510-604 (902)
145 COG1643 HrpA HrpA-like helicas 94.6 0.056 1.2E-06 43.2 4.3 85 2-88 291-390 (845)
146 PRK11747 dinG ATP-dependent DN 94.5 0.11 2.3E-06 40.9 5.6 44 12-56 569-617 (697)
147 KOG0924|consensus 94.5 0.06 1.3E-06 42.4 4.0 89 2-92 601-704 (1042)
148 PRK12326 preprotein translocas 93.7 0.11 2.4E-06 41.0 4.2 52 29-80 478-544 (764)
149 PRK12899 secA preprotein trans 93.6 0.13 2.7E-06 41.7 4.3 52 29-80 619-678 (970)
150 KOG0951|consensus 93.5 0.13 2.9E-06 42.9 4.4 70 1-72 610-689 (1674)
151 PRK07246 bifunctional ATP-depe 92.9 0.36 7.8E-06 38.7 6.0 42 13-56 683-726 (820)
152 PRK12901 secA preprotein trans 92.0 0.25 5.4E-06 40.5 4.1 52 29-80 679-738 (1112)
153 PRK13103 secA preprotein trans 90.7 0.42 9.1E-06 38.7 4.1 37 45-81 553-589 (913)
154 PF06862 DUF1253: Protein of u 90.4 2.7 5.9E-05 31.5 7.9 83 1-84 327-414 (442)
155 COG4581 Superfamily II RNA hel 89.8 1.1 2.4E-05 36.9 5.8 75 5-82 451-534 (1041)
156 TIGR03117 cas_csf4 CRISPR-asso 89.3 1.9 4E-05 33.9 6.5 46 12-58 506-564 (636)
157 KOG0920|consensus 88.7 0.55 1.2E-05 38.1 3.4 82 2-88 448-547 (924)
158 PRK15483 type III restriction- 87.5 3.6 7.8E-05 33.9 7.3 68 28-96 503-578 (986)
159 PF11496 HDA2-3: Class II hist 86.9 4.5 9.7E-05 28.7 6.8 70 25-96 182-256 (297)
160 TIGR02562 cas3_yersinia CRISPR 86.5 2.3 5E-05 35.3 5.7 46 26-74 838-883 (1110)
161 COG0610 Type I site-specific r 86.3 5.8 0.00013 32.7 7.9 70 12-83 579-651 (962)
162 KOG0948|consensus 86.2 0.64 1.4E-05 37.2 2.4 71 19-92 467-545 (1041)
163 KOG0925|consensus 77.6 2.8 6E-05 32.3 3.0 58 29-88 316-390 (699)
164 PF12367 PFO_beta_C: Pyruvate 74.2 12 0.00027 20.5 4.6 48 46-94 15-62 (67)
165 PF08469 NPHI_C: Nucleoside tr 74.1 3.4 7.4E-05 26.3 2.3 31 73-103 8-43 (148)
166 PRK10917 ATP-dependent DNA hel 64.7 15 0.00032 29.1 4.5 50 2-52 342-391 (681)
167 KOG3432|consensus 63.2 23 0.0005 21.6 4.2 36 1-37 38-73 (121)
168 PF12622 NpwBP: mRNA biogenesi 62.3 4.5 9.8E-05 20.8 0.9 12 47-58 3-14 (48)
169 TIGR01101 V_ATP_synt_F vacuola 58.9 30 0.00066 21.1 4.3 36 1-36 36-71 (115)
170 TIGR00643 recG ATP-dependent D 58.0 24 0.00052 27.6 4.6 50 2-52 316-365 (630)
171 COG1110 Reverse gyrase [DNA re 57.4 15 0.00033 30.8 3.5 41 13-54 372-416 (1187)
172 PRK09570 rpoH DNA-directed RNA 57.1 27 0.0006 19.9 3.6 41 7-48 17-58 (79)
173 COG0553 HepA Superfamily II DN 56.1 2.2 4.8E-05 33.7 -1.3 39 33-73 486-524 (866)
174 KOG1133|consensus 50.3 63 0.0014 26.2 5.7 22 35-56 698-721 (821)
175 PRK13556 azoreductase; Provisi 49.5 16 0.00035 24.1 2.2 30 42-71 87-119 (208)
176 COG3869 Arginine kinase [Amino 49.3 80 0.0017 23.0 5.6 62 7-68 78-146 (352)
177 PF09445 Methyltransf_15: RNA 42.5 14 0.00031 23.9 1.1 17 46-62 70-86 (163)
178 PRK10909 rsmD 16S rRNA m(2)G96 42.0 60 0.0013 21.6 4.1 27 46-72 122-148 (199)
179 CHL00122 secA preprotein trans 41.0 26 0.00057 28.8 2.5 33 47-79 595-627 (870)
180 COG3587 Restriction endonuclea 40.1 1.1E+02 0.0024 25.5 5.7 44 27-70 484-527 (985)
181 PF05063 MT-A70: MT-A70 ; Int 40.1 19 0.0004 23.3 1.4 13 47-59 2-14 (176)
182 KOG0701|consensus 39.0 6.4 0.00014 34.1 -1.1 57 13-71 343-399 (1606)
183 COG1110 Reverse gyrase [DNA re 38.7 41 0.00088 28.4 3.2 33 4-37 161-193 (1187)
184 PF03602 Cons_hypoth95: Conser 38.0 45 0.00097 21.8 2.9 55 14-70 82-140 (183)
185 KOG0922|consensus 35.9 18 0.00038 28.7 0.9 27 54-80 362-388 (674)
186 TIGR00580 mfd transcription-re 34.6 79 0.0017 26.3 4.3 49 3-52 533-581 (926)
187 KOG0979|consensus 33.5 77 0.0017 26.7 4.0 45 15-60 1007-1052(1072)
188 COG2961 ComJ Protein involved 32.6 1.8E+02 0.004 20.6 5.2 28 34-64 228-255 (279)
189 PF07208 DUF1414: Protein of u 32.0 57 0.0012 16.5 2.1 16 6-21 22-37 (44)
190 PF14202 TnpW: Transposon-enco 31.4 69 0.0015 15.3 3.6 26 69-96 6-35 (37)
191 PLN00204 CP12 gene family prot 31.4 1.3E+02 0.0029 18.7 4.7 55 33-97 12-67 (126)
192 PF09776 Mitoc_L55: Mitochondr 30.7 91 0.002 19.2 3.2 72 26-98 45-116 (116)
193 PF10623 PilI: Plasmid conjuga 30.7 80 0.0017 18.0 2.7 25 8-32 26-50 (83)
194 PF09010 AsiA: Anti-Sigma Fact 30.4 33 0.00072 20.1 1.2 17 6-22 60-76 (91)
195 PRK07261 topology modulation p 29.5 1.3E+02 0.0028 19.2 4.0 64 9-74 44-108 (171)
196 PF06723 MreB_Mbl: MreB/Mbl pr 29.2 1.2E+02 0.0025 22.0 4.1 90 4-101 100-194 (326)
197 PF00290 Trp_syntA: Tryptophan 28.8 2.1E+02 0.0045 20.0 6.2 86 6-97 67-162 (259)
198 PRK10689 transcription-repair 28.7 98 0.0021 26.4 4.0 47 3-50 682-728 (1147)
199 PRK01355 azoreductase; Reviewe 28.3 66 0.0014 21.1 2.5 30 42-71 75-107 (199)
200 cd07014 S49_SppA Signal peptid 27.9 1.3E+02 0.0027 19.3 3.8 29 6-34 20-48 (177)
201 KOG0442|consensus 27.3 1.1E+02 0.0023 25.4 3.8 51 43-99 543-596 (892)
202 PF02399 Herpes_ori_bp: Origin 27.3 2.6E+02 0.0057 23.2 6.0 49 25-74 326-380 (824)
203 PRK06144 enoyl-CoA hydratase; 27.2 1.1E+02 0.0023 21.1 3.5 33 12-44 39-74 (262)
204 PHA03371 circ protein; Provisi 26.8 69 0.0015 22.1 2.4 45 35-79 29-87 (240)
205 COG1643 HrpA HrpA-like helicas 26.6 33 0.00071 28.2 1.0 26 55-80 360-385 (845)
206 PF15265 FAM196: FAM196 family 26.5 75 0.0016 24.6 2.8 40 61-100 426-474 (514)
207 COG1200 RecG RecG-like helicas 26.2 1.5E+02 0.0032 23.9 4.3 50 3-53 344-393 (677)
208 COG3260 Ni,Fe-hydrogenase III 25.8 1.9E+02 0.004 18.5 4.5 30 2-31 53-82 (148)
209 PRK07511 enoyl-CoA hydratase; 25.7 1.2E+02 0.0026 20.7 3.6 34 12-45 34-69 (260)
210 PF10593 Z1: Z1 domain; Inter 25.4 1.2E+02 0.0027 20.7 3.5 58 27-87 136-194 (239)
211 PLN03214 probable enoyl-CoA hy 25.1 1.1E+02 0.0025 21.2 3.4 33 12-44 42-78 (278)
212 COG0159 TrpA Tryptophan syntha 25.1 2.5E+02 0.0055 19.8 6.7 87 5-97 73-169 (265)
213 KOG1680|consensus 24.7 1.4E+02 0.003 21.4 3.6 45 11-55 67-113 (290)
214 PRK00170 azoreductase; Reviewe 24.6 1E+02 0.0022 19.9 3.0 28 42-69 84-114 (201)
215 PRK13555 azoreductase; Provisi 24.4 1E+02 0.0022 20.6 2.9 30 42-71 87-119 (208)
216 COG0742 N6-adenine-specific me 24.4 1.3E+02 0.0028 20.1 3.3 15 46-60 115-129 (187)
217 PRK05809 3-hydroxybutyryl-CoA 24.0 1.4E+02 0.0031 20.3 3.7 39 7-45 27-71 (260)
218 PRK05980 enoyl-CoA hydratase; 24.0 1.3E+02 0.0029 20.5 3.5 32 13-44 35-69 (260)
219 PRK03971 putative deoxyhypusin 23.9 1.1E+02 0.0024 22.3 3.2 68 1-71 70-137 (334)
220 cd04468 S1_eIF5A S1_eIF5A: Euk 23.5 1.4E+02 0.0031 16.4 3.1 20 13-32 37-56 (69)
221 cd07019 S49_SppA_1 Signal pept 23.3 1.5E+02 0.0033 19.6 3.6 18 36-53 82-99 (211)
222 COG0653 SecA Preprotein transl 23.2 1E+02 0.0022 25.4 3.1 44 30-73 481-535 (822)
223 PRK06072 enoyl-CoA hydratase; 23.2 1.5E+02 0.0033 20.1 3.6 38 7-44 23-65 (248)
224 COG1582 FlgEa Uncharacterized 22.8 1.3E+02 0.0028 16.5 2.6 23 80-102 37-59 (67)
225 KOG2915|consensus 22.5 1.6E+02 0.0034 21.3 3.6 43 12-54 142-186 (314)
226 PRK07657 enoyl-CoA hydratase; 22.4 1.5E+02 0.0033 20.2 3.6 33 12-44 35-70 (260)
227 PF03543 Peptidase_C58: Yersin 22.2 2.5E+02 0.0055 18.7 5.0 50 6-55 109-162 (204)
228 KOG1681|consensus 22.1 1.8E+02 0.004 20.4 3.8 31 16-46 57-89 (292)
229 PRK05580 primosome assembly pr 22.1 3.1E+02 0.0067 21.9 5.5 48 2-52 219-266 (679)
230 TIGR00095 RNA methyltransferas 21.8 2.4E+02 0.0052 18.4 4.3 26 45-70 121-146 (189)
231 PRK06494 enoyl-CoA hydratase; 21.8 1.6E+02 0.0035 20.1 3.6 34 11-44 34-70 (259)
232 PRK07327 enoyl-CoA hydratase; 21.6 1.5E+02 0.0033 20.4 3.4 37 8-44 36-77 (268)
233 PRK09674 enoyl-CoA hydratase-i 21.4 1.6E+02 0.0035 20.1 3.5 39 6-44 24-67 (255)
234 PRK09076 enoyl-CoA hydratase; 21.4 1.7E+02 0.0036 20.0 3.6 38 7-44 25-68 (258)
235 PF09043 Lys-AminoMut_A: D-Lys 21.3 1.4E+02 0.003 22.9 3.3 35 63-97 134-168 (509)
236 TIGR03406 FeS_long_SufT probab 21.0 56 0.0012 21.4 1.1 16 45-60 149-164 (174)
237 PRK06127 enoyl-CoA hydratase; 20.6 1.6E+02 0.0035 20.2 3.4 33 12-44 42-77 (269)
238 KOG2997|consensus 20.5 2E+02 0.0043 21.2 3.8 83 8-93 238-320 (366)
239 PF02525 Flavodoxin_2: Flavodo 20.3 50 0.0011 21.4 0.8 31 42-72 76-109 (199)
240 PRK03580 carnitinyl-CoA dehydr 20.3 1.7E+02 0.0037 20.0 3.5 38 7-44 25-68 (261)
241 TIGR03249 KdgD 5-dehydro-4-deo 20.2 3.2E+02 0.0069 19.1 5.9 88 8-97 55-153 (296)
242 PF00763 THF_DHG_CYH: Tetrahyd 20.1 2.1E+02 0.0046 17.1 4.0 30 3-32 65-94 (117)
243 cd07997 WGR_PARP WGR domain of 20.0 80 0.0017 18.5 1.6 14 61-74 43-56 (102)
No 1
>KOG0390|consensus
Probab=100.00 E-value=5.6e-33 Score=209.65 Aligned_cols=103 Identities=30% Similarity=0.438 Sum_probs=98.7
Q ss_pred CEEEECCCCHHHHHHHHHHhccCCCe-eEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEE
Q psy12190 1 YIRIDGSVGSEERKSVVDQFQYEDKF-RVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQ 79 (105)
Q Consensus 1 ~~~~~g~~~~~~r~~~~~~F~~~~~~-~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~ 79 (105)
|+++||+++..+|+.+++.||++++. .|+|+|++|||+||||..|+++|++|++|||+...||++|+||.||+++|+||
T Consensus 622 ~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 622 VLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred EEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 58999999999999999999987766 89999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCHHHHHHHHHHhhhhcCC
Q psy12190 80 YLVAKQTADDYLWPLVMTKLDVPS 103 (105)
Q Consensus 80 ~l~~~~s~d~~i~~~~~~K~~~~~ 103 (105)
+|++.||+||++++++..|..+..
T Consensus 702 rLlatGtiEEk~~qrq~~K~~lS~ 725 (776)
T KOG0390|consen 702 RLLATGTIEEKIYQRQTHKEGLSS 725 (776)
T ss_pred EeecCCCchHHHHHHHHHhhhhhh
Confidence 999999999999999999987654
No 2
>KOG0392|consensus
Probab=100.00 E-value=4.1e-33 Score=215.09 Aligned_cols=104 Identities=37% Similarity=0.570 Sum_probs=101.9
Q ss_pred CEEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEE
Q psy12190 1 YIRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQY 80 (105)
Q Consensus 1 ~~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~ 80 (105)
|+++||++++.+|++++++||+++++.|||+++.+||.||||+.|++|||+|.+|||....||+.|+||+||++.|.|||
T Consensus 1370 ymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyR 1449 (1549)
T KOG0392|consen 1370 YMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYR 1449 (1549)
T ss_pred EEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeee
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCHHHHHHHHHHhhhhcCCC
Q psy12190 81 LVAKQTADDYLWPLVMTKLDVPSP 104 (105)
Q Consensus 81 l~~~~s~d~~i~~~~~~K~~~~~~ 104 (105)
++++||+||+++.+++.|.++++.
T Consensus 1450 lItrGTLEEKVMgLQkFKmnvAnt 1473 (1549)
T KOG0392|consen 1450 LITRGTLEEKVMGLQKFKMNVANT 1473 (1549)
T ss_pred ehhcccHHHHHhhHHHHhhHHHHH
Confidence 999999999999999999998865
No 3
>KOG0387|consensus
Probab=99.98 E-value=2e-32 Score=205.02 Aligned_cols=104 Identities=30% Similarity=0.497 Sum_probs=100.8
Q ss_pred CEEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEE
Q psy12190 1 YIRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQY 80 (105)
Q Consensus 1 ~~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~ 80 (105)
|++++|.+|...|+.++++||++....|+|+++++||.|+||+.|+.||+|||.|||+...||-.|+||+||+++|.|||
T Consensus 574 ylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYR 653 (923)
T KOG0387|consen 574 YLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYR 653 (923)
T ss_pred EEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCHHHHHHHHHHhhhhcCCC
Q psy12190 81 LVAKQTADDYLWPLVMTKLDVPSP 104 (105)
Q Consensus 81 l~~~~s~d~~i~~~~~~K~~~~~~ 104 (105)
|++.|||||++|.++-.|..+.+.
T Consensus 654 L~t~gTIEEkiY~rQI~Kq~Ltn~ 677 (923)
T KOG0387|consen 654 LMTAGTIEEKIYHRQIFKQFLTNR 677 (923)
T ss_pred EecCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999877654
No 4
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.97 E-value=3.7e-31 Score=205.81 Aligned_cols=102 Identities=35% Similarity=0.551 Sum_probs=96.0
Q ss_pred CEEEECCCCHHHHHHHHHHhccCCC-eeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEE
Q psy12190 1 YIRIDGSVGSEERKSVVDQFQYEDK-FRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQ 79 (105)
Q Consensus 1 ~~~~~g~~~~~~r~~~~~~F~~~~~-~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~ 79 (105)
|++++|+++.++|+.+++.|+++++ ..++|+|+++||+||||+.|++||++|++|||..+.||+||+||+||+++|.||
T Consensus 514 y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~Vy 593 (1033)
T PLN03142 514 YCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVF 593 (1033)
T ss_pred EEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEE
Confidence 6899999999999999999987543 457899999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCHHHHHHHHHHhhhhcC
Q psy12190 80 YLVAKQTADDYLWPLVMTKLDVP 102 (105)
Q Consensus 80 ~l~~~~s~d~~i~~~~~~K~~~~ 102 (105)
+|+++||+||+|++++..|..+.
T Consensus 594 RLIt~gTIEEkIlera~~Kl~Ld 616 (1033)
T PLN03142 594 RFCTEYTIEEKVIERAYKKLALD 616 (1033)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 5
>KOG0385|consensus
Probab=99.97 E-value=7.4e-31 Score=196.38 Aligned_cols=102 Identities=36% Similarity=0.558 Sum_probs=97.5
Q ss_pred CEEEECCCCHHHHHHHHHHhccCC-CeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEE
Q psy12190 1 YIRIDGSVGSEERKSVVDQFQYED-KFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQ 79 (105)
Q Consensus 1 ~~~~~g~~~~~~r~~~~~~F~~~~-~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~ 79 (105)
|||+||+++.++|...|+.|+.++ ...|+++|++|||.|+||..|++||+||.+|||....||+.|+||+||+++|.||
T Consensus 514 ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~ 593 (971)
T KOG0385|consen 514 YCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVY 593 (971)
T ss_pred eEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEE
Confidence 899999999999999999999765 4678899999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCHHHHHHHHHHhhhhcC
Q psy12190 80 YLVAKQTADDYLWPLVMTKLDVP 102 (105)
Q Consensus 80 ~l~~~~s~d~~i~~~~~~K~~~~ 102 (105)
+|++++|+||+|+++...|..+-
T Consensus 594 RLitentVEe~IveRA~~KL~Ld 616 (971)
T KOG0385|consen 594 RLITENTVEEKIVERAAAKLRLD 616 (971)
T ss_pred EEeccchHHHHHHHHHHHHhchh
Confidence 99999999999999999998764
No 6
>KOG0389|consensus
Probab=99.97 E-value=3.1e-30 Score=193.30 Aligned_cols=102 Identities=37% Similarity=0.572 Sum_probs=99.4
Q ss_pred CEEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEE
Q psy12190 1 YIRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQY 80 (105)
Q Consensus 1 ~~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~ 80 (105)
|+|++|++...+|+.+|+.|+.+.++.|+|+|+++||.||||++|++||++|.++||-...||..||||.||+++|+||+
T Consensus 804 ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~r 883 (941)
T KOG0389|consen 804 YLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYR 883 (941)
T ss_pred EEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCHHHHHHHHHHhhhhcC
Q psy12190 81 LVAKQTADDYLWPLVMTKLDVP 102 (105)
Q Consensus 81 l~~~~s~d~~i~~~~~~K~~~~ 102 (105)
|++++||||.|+++...|..+=
T Consensus 884 LItk~TIEE~I~~lA~~KL~Le 905 (941)
T KOG0389|consen 884 LITKSTIEEGILRLAKTKLALE 905 (941)
T ss_pred EEecCcHHHHHHHHHHHhhhhh
Confidence 9999999999999999998653
No 7
>KOG0384|consensus
Probab=99.96 E-value=3.1e-29 Score=193.88 Aligned_cols=101 Identities=37% Similarity=0.498 Sum_probs=95.1
Q ss_pred CEEEECCCCHHHHHHHHHHhccCCC-eeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEE
Q psy12190 1 YIRIDGSVGSEERKSVVDQFQYEDK-FRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQ 79 (105)
Q Consensus 1 ~~~~~g~~~~~~r~~~~~~F~~~~~-~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~ 79 (105)
|-|+||+++.+-|+.+|++|+.+++ ..|+|+|++|||.||||..|++||+||.+|||....||..|+||+||++.|.||
T Consensus 726 fQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVY 805 (1373)
T KOG0384|consen 726 FQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVY 805 (1373)
T ss_pred ceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEE
Confidence 6799999999999999999998654 456799999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCHHHHHHHHHHhhhhc
Q psy12190 80 YLVAKQTADDYLWPLVMTKLDV 101 (105)
Q Consensus 80 ~l~~~~s~d~~i~~~~~~K~~~ 101 (105)
||++++|+|+.|+++...|+-+
T Consensus 806 RLVTk~TvEeEilERAk~KmvL 827 (1373)
T KOG0384|consen 806 RLVTKNTVEEEILERAKLKMVL 827 (1373)
T ss_pred EEecCCchHHHHHHHHHHHhhh
Confidence 9999999999999999998743
No 8
>KOG1002|consensus
Probab=99.96 E-value=1.4e-28 Score=178.37 Aligned_cols=103 Identities=26% Similarity=0.458 Sum_probs=100.2
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
+.+.|+|++..|...++.|.++.++.|+|+|.++||..|||+.|++|+++||+|||..+.|+..|+||+||.++|.|.+|
T Consensus 666 VkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf 745 (791)
T KOG1002|consen 666 VKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRF 745 (791)
T ss_pred EEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEe
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCHHHHHHHHHHhhhhcCCC
Q psy12190 82 VAKQTADDYLWPLVMTKLDVPSP 104 (105)
Q Consensus 82 ~~~~s~d~~i~~~~~~K~~~~~~ 104 (105)
+.++|+|++|+++++.|.+++.+
T Consensus 746 ~iEnsiE~kIieLQeKKa~miha 768 (791)
T KOG1002|consen 746 CIENSIEEKIIELQEKKANMIHA 768 (791)
T ss_pred ehhccHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999998864
No 9
>KOG0391|consensus
Probab=99.95 E-value=2.1e-28 Score=188.92 Aligned_cols=100 Identities=34% Similarity=0.578 Sum_probs=96.9
Q ss_pred CEEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEE
Q psy12190 1 YIRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQY 80 (105)
Q Consensus 1 ~~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~ 80 (105)
|+++||+++.++|+.++++||.+..+.|+|+|+.++|.|+||+.|++|||||.+|||....|+-.||||+||+++|+||+
T Consensus 1303 Y~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYR 1382 (1958)
T KOG0391|consen 1303 YVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYR 1382 (1958)
T ss_pred EEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCHHHHHHHHHHhhhh
Q psy12190 81 LVAKQTADDYLWPLVMTKLD 100 (105)
Q Consensus 81 l~~~~s~d~~i~~~~~~K~~ 100 (105)
|+++.||||+|++....|.-
T Consensus 1383 LISe~TIEeniLkkanqKr~ 1402 (1958)
T KOG0391|consen 1383 LISERTIEENILKKANQKRM 1402 (1958)
T ss_pred eeccchHHHHHHhhhhHHHH
Confidence 99999999999999877753
No 10
>KOG0388|consensus
Probab=99.94 E-value=4.6e-27 Score=175.65 Aligned_cols=101 Identities=38% Similarity=0.555 Sum_probs=96.6
Q ss_pred CEEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEE
Q psy12190 1 YIRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQY 80 (105)
Q Consensus 1 ~~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~ 80 (105)
|++++|+.+..+|..++.+|+. +.+.|+|+|+.+||.|+||+.|++|||||.+|||....||+.|+||+||+++|+||+
T Consensus 1071 ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyr 1149 (1185)
T KOG0388|consen 1071 YLRLDGSSKASDRRDVVRDWQA-SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYR 1149 (1185)
T ss_pred eEEecCcchhhHHHHHHhhccC-CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeee
Confidence 7899999999999999999997 668899999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCHHHHHHHHHHhhhhcC
Q psy12190 81 LVAKQTADDYLWPLVMTKLDVP 102 (105)
Q Consensus 81 l~~~~s~d~~i~~~~~~K~~~~ 102 (105)
|+++||+||+++++..+|..+.
T Consensus 1150 l~~rgTvEEk~l~rA~qK~~vQ 1171 (1185)
T KOG0388|consen 1150 LITRGTVEEKVLERANQKDEVQ 1171 (1185)
T ss_pred ecccccHHHHHHHHhhhHHHHH
Confidence 9999999999999999997653
No 11
>KOG1015|consensus
Probab=99.94 E-value=7.7e-27 Score=178.04 Aligned_cols=104 Identities=33% Similarity=0.464 Sum_probs=97.7
Q ss_pred CEEEECCCCHHHHHHHHHHhccCCC--eeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEE
Q psy12190 1 YIRIDGSVGSEERKSVVDQFQYEDK--FRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLI 78 (105)
Q Consensus 1 ~~~~~g~~~~~~r~~~~~~F~~~~~--~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v 78 (105)
|.+++|+++..+|+++.+.||++.+ .+++|+|+++|+.|+||..||.||++|-.|||+-..|++.|+||+||+++|+|
T Consensus 1191 yyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyi 1270 (1567)
T KOG1015|consen 1191 YYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYI 1270 (1567)
T ss_pred eEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceee
Confidence 7899999999999999999997665 45689999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCHHHHHHHHHHhhhhcCCC
Q psy12190 79 QYLVAKQTADDYLWPLVMTKLDVPSP 104 (105)
Q Consensus 79 ~~l~~~~s~d~~i~~~~~~K~~~~~~ 104 (105)
|+|++.||+|++||+++-.|..++-+
T Consensus 1271 YRfiAqGTmEeKIYkRQVTKqsls~R 1296 (1567)
T KOG1015|consen 1271 YRFIAQGTMEEKIYKRQVTKQSLSFR 1296 (1567)
T ss_pred hhhhhcccHHHHHHHHHHhHhhhhhh
Confidence 99999999999999999999876543
No 12
>KOG1000|consensus
Probab=99.93 E-value=1.9e-26 Score=167.04 Aligned_cols=104 Identities=64% Similarity=0.978 Sum_probs=100.5
Q ss_pred CEEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEE
Q psy12190 1 YIRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQY 80 (105)
Q Consensus 1 ~~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~ 80 (105)
+++|||+++..+|+.+++.|+.++.+.|-+++.-++|.||+|+.|+.|+|.+++|||+...||..|+||+||+..|.||+
T Consensus 519 ~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 519 SIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQY 598 (689)
T ss_pred eEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCHHHHHHHHHHhhhhcCCC
Q psy12190 81 LVAKQTADDYLWPLVMTKLDVPSP 104 (105)
Q Consensus 81 l~~~~s~d~~i~~~~~~K~~~~~~ 104 (105)
|+++||+|+.+|.++..|.+.+..
T Consensus 599 lvAKgT~Ddy~Wp~l~~KL~vl~s 622 (689)
T KOG1000|consen 599 LVAKGTADDYMWPMLQQKLDVLGS 622 (689)
T ss_pred EEecCchHHHHHHHHHHHHHHHhh
Confidence 999999999999999999987653
No 13
>KOG4439|consensus
Probab=99.93 E-value=4.7e-26 Score=169.63 Aligned_cols=104 Identities=38% Similarity=0.598 Sum_probs=98.5
Q ss_pred CEEEECCCCHHHHHHHHHHhccCC-CeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEE
Q psy12190 1 YIRIDGSVGSEERKSVVDQFQYED-KFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQ 79 (105)
Q Consensus 1 ~~~~~g~~~~~~r~~~~~~F~~~~-~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~ 79 (105)
|..++|.+...+|+.+++.|+... +..|+|++..+||.||||..|+|+|++|+.|||..+.||..|++|+||+++|+||
T Consensus 773 y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 773 YTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred eeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 568999999999999999999654 4899999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCHHHHHHHHHHhhhhcCCC
Q psy12190 80 YLVAKQTADDYLWPLVMTKLDVPSP 104 (105)
Q Consensus 80 ~l~~~~s~d~~i~~~~~~K~~~~~~ 104 (105)
+|+++||+|+++..++..|.+++..
T Consensus 853 R~~~~gTvEqrV~~LQdkKldlA~~ 877 (901)
T KOG4439|consen 853 RLMCKGTVEQRVKSLQDKKLDLAKG 877 (901)
T ss_pred EEEecCcHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999988753
No 14
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.93 E-value=1e-25 Score=173.07 Aligned_cols=103 Identities=34% Similarity=0.621 Sum_probs=98.3
Q ss_pred CEEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEE
Q psy12190 1 YIRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQY 80 (105)
Q Consensus 1 ~~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~ 80 (105)
|++++|+++...|+..++.|++++...|+++++++||.|+||+.|++||++|++|||..+.|++.|+||+||+++|.||+
T Consensus 738 ~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r 817 (866)
T COG0553 738 YVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYR 817 (866)
T ss_pred EEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEE
Confidence 68999999999999999999988778899999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCHHHHHHHHHHhhhhcCC
Q psy12190 81 LVAKQTADDYLWPLVMTKLDVPS 103 (105)
Q Consensus 81 l~~~~s~d~~i~~~~~~K~~~~~ 103 (105)
++++||+||++++.+..|..+.+
T Consensus 818 ~i~~~tiEe~i~~~~~~K~~l~~ 840 (866)
T COG0553 818 LITRGTIEEKILELQEKKQELLD 840 (866)
T ss_pred eecCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999976543
No 15
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.92 E-value=2.7e-25 Score=172.58 Aligned_cols=102 Identities=23% Similarity=0.274 Sum_probs=94.7
Q ss_pred EEEECCCCHHHHHHHHHHhccCC-CeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYED-KFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQY 80 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~-~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~ 80 (105)
..+||+++..+|.++++.|+.++ .+.|||+ ++++|+|+|++.+++||+||+||||..++||+||++|+||+++|.||.
T Consensus 522 ~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIs-TdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~ 600 (956)
T PRK04914 522 AVFHEGMSIIERDRAAAYFADEEDGAQVLLC-SEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHV 600 (956)
T ss_pred EEEECCCCHHHHHHHHHHHhcCCCCccEEEe-chhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 46999999999999999999753 5677655 599999999999999999999999999999999999999999999999
Q ss_pred EeeCCCHHHHHHHHHHhhhhcCCC
Q psy12190 81 LVAKQTADDYLWPLVMTKLDVPSP 104 (105)
Q Consensus 81 l~~~~s~d~~i~~~~~~K~~~~~~ 104 (105)
++.++|+|+.+++....|.++++.
T Consensus 601 ~~~~~t~~e~i~~~~~~~l~ife~ 624 (956)
T PRK04914 601 PYLEGTAQERLFRWYHEGLNAFEH 624 (956)
T ss_pred ccCCCCHHHHHHHHHhhhcCceec
Confidence 999999999999999999988764
No 16
>KOG0386|consensus
Probab=99.89 E-value=3.1e-23 Score=158.80 Aligned_cols=104 Identities=34% Similarity=0.550 Sum_probs=97.5
Q ss_pred CEEEECCCCHHHHHHHHHHhccCCC-eeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEE
Q psy12190 1 YIRIDGSVGSEERKSVVDQFQYEDK-FRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQ 79 (105)
Q Consensus 1 ~~~~~g~~~~~~r~~~~~~F~~~~~-~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~ 79 (105)
|.++||+++.++|...++.||.+++ +.++|+++.+||.|+||+.|++||++|++|||....||..|+||+||+++|.|+
T Consensus 753 YlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~ 832 (1157)
T KOG0386|consen 753 YLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVL 832 (1157)
T ss_pred eeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeee
Confidence 7899999999999999999998765 446799999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCHHHHHHHHHHhhhhcCCC
Q psy12190 80 YLVAKQTADDYLWPLVMTKLDVPSP 104 (105)
Q Consensus 80 ~l~~~~s~d~~i~~~~~~K~~~~~~ 104 (105)
++++-+|+||+|+.....|.++...
T Consensus 833 rl~tv~sveE~il~~a~~Kl~~d~k 857 (1157)
T KOG0386|consen 833 RLITVNSVEEKILAEAFYKLDVDGK 857 (1157)
T ss_pred eeehhhHHHHHHHHHHHHhcCchHh
Confidence 9999999999999999999887543
No 17
>KOG1001|consensus
Probab=99.87 E-value=3e-24 Score=162.05 Aligned_cols=103 Identities=29% Similarity=0.510 Sum_probs=98.9
Q ss_pred CEEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEE
Q psy12190 1 YIRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQY 80 (105)
Q Consensus 1 ~~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~ 80 (105)
|.+++|.++...|.+.+..|..++.+.+++++.++|+.|+||+.|+||+.+||+|||..++|++.|+||+||+++|.|++
T Consensus 566 ~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r 645 (674)
T KOG1001|consen 566 FLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSR 645 (674)
T ss_pred cchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeee
Confidence 56789999999999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCHHHHHHHHHHhhhhcCC
Q psy12190 81 LVAKQTADDYLWPLVMTKLDVPS 103 (105)
Q Consensus 81 l~~~~s~d~~i~~~~~~K~~~~~ 103 (105)
++.++|+||++++++++|..+..
T Consensus 646 ~~i~dtveer~l~iq~~K~~~~~ 668 (674)
T KOG1001|consen 646 FIIKDTVEERILKIQEKKREYNA 668 (674)
T ss_pred ehhhhccHHHHHHHHHHHHHHHh
Confidence 99999999999999999987653
No 18
>KOG1016|consensus
Probab=99.85 E-value=9.3e-22 Score=148.58 Aligned_cols=105 Identities=28% Similarity=0.484 Sum_probs=99.5
Q ss_pred CEEEECCCCHHHHHHHHHHhccCCCee-EEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEE
Q psy12190 1 YIRIDGSVGSEERKSVVDQFQYEDKFR-VAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQ 79 (105)
Q Consensus 1 ~~~~~g~~~~~~r~~~~~~F~~~~~~~-vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~ 79 (105)
|.+++|.++..+|+++|++||.+.++. .+++|++++..|+||-.|+.+++++-.|||....||..|++|+||+++++||
T Consensus 764 y~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvY 843 (1387)
T KOG1016|consen 764 YLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVY 843 (1387)
T ss_pred eecccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEE
Confidence 678999999999999999999888776 6789999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCHHHHHHHHHHhhhhcCCCC
Q psy12190 80 YLVAKQTADDYLWPLVMTKLDVPSPI 105 (105)
Q Consensus 80 ~l~~~~s~d~~i~~~~~~K~~~~~~i 105 (105)
++++++++|.+||.++..|..|.++|
T Consensus 844 RlVmD~~lEkkIydRQIsKqGmsdRv 869 (1387)
T KOG1016|consen 844 RLVMDNSLEKKIYDRQISKQGMSDRV 869 (1387)
T ss_pred eehhhhhhHHHHHHHHHhhccchhhh
Confidence 99999999999999999999887764
No 19
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.77 E-value=2.3e-19 Score=102.32 Aligned_cols=68 Identities=31% Similarity=0.535 Sum_probs=61.7
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccC
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIG 71 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~G 71 (105)
..++|+++.++|+.+++.|+.+. ..+| +++.++++|+|++.+++||+++++||+..+.|++||++|.|
T Consensus 11 ~~i~~~~~~~~r~~~~~~f~~~~-~~vl-i~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 11 AIIHGDMSQKERQEILKKFNSGE-IRVL-IATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp EEESTTSHHHHHHHHHHHHHTTS-SSEE-EESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred EEEECCCCHHHHHHHHHHhhccC-ceEE-EeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 57899999999999999999655 4564 55599999999999999999999999999999999999987
No 20
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.70 E-value=4.1e-17 Score=92.69 Aligned_cols=68 Identities=28% Similarity=0.579 Sum_probs=61.9
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccC
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIG 71 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~G 71 (105)
..++|+++.++|..+++.|+++.. . +|+++.++++|+|++.+++||+++++|++..+.|++||++|.|
T Consensus 15 ~~~~~~~~~~~r~~~~~~f~~~~~-~-vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 15 ARLHGGLSQEEREEILEKFNNGKI-K-VLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCC-e-EEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 578999999999999999996553 4 4667799999999999999999999999999999999999987
No 21
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.69 E-value=5.6e-17 Score=99.50 Aligned_cols=76 Identities=26% Similarity=0.466 Sum_probs=67.4
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQ 79 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~ 79 (105)
..++|+++..+|..+++.|+++. ..+ ++++.++++|+|++.++++++++++|++..+.|++||++|.||...+.++
T Consensus 56 ~~~~~~~~~~~~~~~~~~f~~~~-~~i-li~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 56 AALHGDGSQEEREEVLKDFREGE-IVV-LVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred EEEECCCCHHHHHHHHHHHHcCC-CcE-EEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 57899999999999999999655 455 55668999999999999999999999999999999999999998777653
No 22
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.68 E-value=3e-16 Score=119.67 Aligned_cols=92 Identities=23% Similarity=0.283 Sum_probs=81.6
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCC-CcChHhHHHHhhhccCCCC-----eE
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFW-NPGILTQAEDRAHRIGQQD-----SV 76 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~w-n~~~~~Q~~gR~~R~Gq~~-----~v 76 (105)
.++|+++..+|.+++++|+.++.+++|++| +++++|+|++.|+++|++++++ ++..+.||.||+.|.+..+ +.
T Consensus 520 ~I~G~ts~~ER~~il~~Fr~~~~i~vLv~S-kVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A 598 (732)
T TIGR00603 520 FIYGPTSQQERMQILQNFQHNPKVNTIFLS-KVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNA 598 (732)
T ss_pred eEECCCCHHHHHHHHHHHHhCCCccEEEEe-cccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccc
Confidence 479999999999999999876667787776 9999999999999999999886 8999999999999998764 47
Q ss_pred EEEEEeeCCCHHHHHHHHH
Q psy12190 77 LIQYLVAKQTADDYLWPLV 95 (105)
Q Consensus 77 ~v~~l~~~~s~d~~i~~~~ 95 (105)
.+|.|++++|.|+......
T Consensus 599 ~fY~lVs~dT~E~~~s~~R 617 (732)
T TIGR00603 599 FFYSLVSKDTQEMYYSTKR 617 (732)
T ss_pred eEEEEecCCchHHHHHHHH
Confidence 9999999999998885543
No 23
>PRK13766 Hef nuclease; Provisional
Probab=99.65 E-value=6.6e-16 Score=118.99 Aligned_cols=89 Identities=24% Similarity=0.296 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEEeeCCCH
Q psy12190 8 VGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYLVAKQTA 87 (105)
Q Consensus 8 ~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l~~~~s~ 87 (105)
++..+|.+++++|+++ ...+| +++.++++|+|++.+++||++||+||+..+.|+.||++|.|+ ..+|.+++++|.
T Consensus 407 ~~~~~r~~~~~~F~~g-~~~vL-vaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~---~~v~~l~~~~t~ 481 (773)
T PRK13766 407 MSQKEQIEILDKFRAG-EFNVL-VSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE---GRVVVLIAKGTR 481 (773)
T ss_pred CCHHHHHHHHHHHHcC-CCCEE-EECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC---CEEEEEEeCCCh
Confidence 8889999999999964 46675 455899999999999999999999999999998888887765 678999999999
Q ss_pred HHHHHHHHHhhhhc
Q psy12190 88 DDYLWPLVMTKLDV 101 (105)
Q Consensus 88 d~~i~~~~~~K~~~ 101 (105)
||.++....+|.+.
T Consensus 482 ee~~y~~~~~ke~~ 495 (773)
T PRK13766 482 DEAYYWSSRRKEKK 495 (773)
T ss_pred HHHHHHHhhHHHHH
Confidence 99988776666544
No 24
>KOG0298|consensus
Probab=99.51 E-value=6e-15 Score=115.88 Aligned_cols=88 Identities=24% Similarity=0.413 Sum_probs=78.3
Q ss_pred HHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEEeeCCCHHHHH
Q psy12190 12 ERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYLVAKQTADDYL 91 (105)
Q Consensus 12 ~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l~~~~s~d~~i 91 (105)
+....+..|+. +.+|++....++-|+||.+|.||+..+|.-||+.+.||+||+||+||++++.||+++.++|+||.|
T Consensus 1256 d~~dc~~~fk~---I~clll~~~~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~I 1332 (1394)
T KOG0298|consen 1256 DFDDCIICFKS---IDCLLLFVSKGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENI 1332 (1394)
T ss_pred chhhhhhhccc---ceEEEEEeccCcccccHHhhhhhheeccccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHH
Confidence 44455666653 778888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcC
Q psy12190 92 WPLVMTKLDVP 102 (105)
Q Consensus 92 ~~~~~~K~~~~ 102 (105)
+.....|.+..
T Consensus 1333 l~l~~~~ee~l 1343 (1394)
T KOG0298|consen 1333 LSLITSKEETL 1343 (1394)
T ss_pred HHHhhhhHHHH
Confidence 99988776543
No 25
>PTZ00110 helicase; Provisional
Probab=99.49 E-value=1.5e-13 Score=102.89 Aligned_cols=80 Identities=18% Similarity=0.266 Sum_probs=68.2
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..+||+++.++|..+++.|++ +...+ |+++++++.|+|++.+++||++|+|+++..+.|++||++|.|.+..+ +.|
T Consensus 405 ~~ihg~~~~~eR~~il~~F~~-G~~~I-LVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~a--i~~ 480 (545)
T PTZ00110 405 LCIHGDKKQEERTWVLNEFKT-GKSPI-MIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGAS--YTF 480 (545)
T ss_pred EEEECCCcHHHHHHHHHHHhc-CCCcE-EEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE--EEE
Confidence 368999999999999999995 44566 45569999999999999999999999999999999999999976544 455
Q ss_pred eeCC
Q psy12190 82 VAKQ 85 (105)
Q Consensus 82 ~~~~ 85 (105)
++++
T Consensus 481 ~~~~ 484 (545)
T PTZ00110 481 LTPD 484 (545)
T ss_pred ECcc
Confidence 5554
No 26
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.49 E-value=1.2e-13 Score=102.85 Aligned_cols=80 Identities=19% Similarity=0.292 Sum_probs=68.0
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..+||+++.++|..+++.|+. +...+| +++++++.|+|++.+++||++++|.+...|.|++||++|.|..- ..+.|
T Consensus 396 ~~~Hg~~~~~eR~~il~~Fr~-G~~~IL-VaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G--~ai~f 471 (518)
T PLN00206 396 LSIHGEKSMKERREVMKSFLV-GEVPVI-VATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKG--TAIVF 471 (518)
T ss_pred EEeeCCCCHHHHHHHHHHHHC-CCCCEE-EEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCe--EEEEE
Confidence 468999999999999999995 556775 55599999999999999999999999999999999999999653 44445
Q ss_pred eeCC
Q psy12190 82 VAKQ 85 (105)
Q Consensus 82 ~~~~ 85 (105)
+..+
T Consensus 472 ~~~~ 475 (518)
T PLN00206 472 VNEE 475 (518)
T ss_pred Echh
Confidence 5554
No 27
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.47 E-value=2.2e-13 Score=99.60 Aligned_cols=92 Identities=21% Similarity=0.284 Sum_probs=77.3
Q ss_pred CCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEEeeCC
Q psy12190 6 GSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYLVAKQ 85 (105)
Q Consensus 6 g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l~~~~ 85 (105)
-+|++.+...++++|++ +..+||+ ++++|-+|||++.++.||||||.-++-...||.||.+ .++.-+||-|+++|
T Consensus 407 ~GMsQkeQ~eiI~~Fr~-Ge~nVLV-aTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTG---R~r~Grv~vLvt~g 481 (542)
T COG1111 407 KGMSQKEQKEIIDQFRK-GEYNVLV-ATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTG---RKRKGRVVVLVTEG 481 (542)
T ss_pred cccCHHHHHHHHHHHhc-CCceEEE-EcccccccCCCCcccEEEEecCCcHHHHHHHhhCccc---cCCCCeEEEEEecC
Confidence 36899999999999995 5578855 5599999999999999999999977776667666555 55888999999999
Q ss_pred CHHHHHHHHHHhhhhcC
Q psy12190 86 TADDYLWPLVMTKLDVP 102 (105)
Q Consensus 86 s~d~~i~~~~~~K~~~~ 102 (105)
|-|+.-+....+|...+
T Consensus 482 trdeayy~~s~rke~~m 498 (542)
T COG1111 482 TRDEAYYYSSRRKEQKM 498 (542)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 99999999888887543
No 28
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.47 E-value=8.9e-14 Score=100.99 Aligned_cols=80 Identities=18% Similarity=0.228 Sum_probs=68.1
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..+||.++.++|..+++.|++ +.+++|+++ ++++.|+|++.+++||++|+|+++..|.|++||++|.|+.-. .+.|
T Consensus 283 ~~lhg~~~~~~R~~~l~~F~~-g~~~vLVaT-dv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~--ai~~ 358 (423)
T PRK04837 283 GLLTGDVAQKKRLRILEEFTR-GDLDILVAT-DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGH--SISL 358 (423)
T ss_pred EEecCCCChhHHHHHHHHHHc-CCCcEEEEe-chhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCee--EEEE
Confidence 468999999999999999995 457775554 999999999999999999999999999999999999996643 4455
Q ss_pred eeCC
Q psy12190 82 VAKQ 85 (105)
Q Consensus 82 ~~~~ 85 (105)
+.+.
T Consensus 359 ~~~~ 362 (423)
T PRK04837 359 ACEE 362 (423)
T ss_pred eCHH
Confidence 5553
No 29
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.47 E-value=1.9e-13 Score=100.60 Aligned_cols=76 Identities=22% Similarity=0.205 Sum_probs=67.2
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQ 79 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~ 79 (105)
..+||+++.++|..+++.|. .+.+.||++ +.+++.|+|++++++||++++|.+...|.|++||++|.|+...+.++
T Consensus 254 ~~~H~~l~~~eR~~i~~~F~-~g~~~vLVa-T~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 254 GAYHAGLEISARDDVHHKFQ-RDEIQVVVA-TVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred eEeeCCCCHHHHHHHHHHHH-cCCCcEEEE-echhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 46899999999999999999 455777554 58999999999999999999999999999999999999988665554
No 30
>KOG0331|consensus
Probab=99.46 E-value=2.6e-13 Score=100.10 Aligned_cols=95 Identities=19% Similarity=0.242 Sum_probs=75.4
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
+.+||..++.+|..+++.|.+ ++..+|+ +|++++.|||++.+++||++|+|-|...|.||+||.+|.|++-....+.-
T Consensus 369 ~~iHGd~sQ~eR~~~L~~Fre-G~~~vLV-ATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft 446 (519)
T KOG0331|consen 369 VAIHGDKSQSERDWVLKGFRE-GKSPVLV-ATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFT 446 (519)
T ss_pred eeecccccHHHHHHHHHhccc-CCcceEE-EcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEe
Confidence 368999999999999999995 4456755 55999999999999999999999999999999999999887765544443
Q ss_pred eeCCCHHHHHHHHHHhh
Q psy12190 82 VAKQTADDYLWPLVMTK 98 (105)
Q Consensus 82 ~~~~s~d~~i~~~~~~K 98 (105)
...-.....+.+.+..+
T Consensus 447 ~~~~~~a~~l~~~l~e~ 463 (519)
T KOG0331|consen 447 SDNAKLARELIKVLREA 463 (519)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 33334555555555444
No 31
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.45 E-value=2.2e-13 Score=99.96 Aligned_cols=89 Identities=22% Similarity=0.237 Sum_probs=71.4
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..+||.++.++|.++++.|++ +..++|| ++++++.|+|++.+++||++++|.++..|.|++||++|.|....+.. +
T Consensus 273 ~~lhg~~~~~~R~~~l~~F~~-g~~~iLV-aTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~--l 348 (456)
T PRK10590 273 AAIHGNKSQGARTRALADFKS-GDIRVLV-ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALS--L 348 (456)
T ss_pred EEEECCCCHHHHHHHHHHHHc-CCCcEEE-EccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEE--E
Confidence 468999999999999999995 5567755 55999999999999999999999999999999999999997654433 3
Q ss_pred eeCCCHHHHHHHHHH
Q psy12190 82 VAKQTADDYLWPLVM 96 (105)
Q Consensus 82 ~~~~s~d~~i~~~~~ 96 (105)
+... |..+++.++
T Consensus 349 ~~~~--d~~~~~~ie 361 (456)
T PRK10590 349 VCVD--EHKLLRDIE 361 (456)
T ss_pred ecHH--HHHHHHHHH
Confidence 4333 444444443
No 32
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.45 E-value=2.7e-13 Score=98.68 Aligned_cols=75 Identities=15% Similarity=0.264 Sum_probs=65.7
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLI 78 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v 78 (105)
..++|+++.++|..+++.|++ +...||++ +++++.|+|++.+++||++++|+++..|.|++||++|.|....+.+
T Consensus 273 ~~l~g~~~~~~R~~~l~~f~~-G~~~vLVa-Td~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 273 CYLEGEMVQAKRNEAIKRLTD-GRVNVLVA-TDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred EEecCCCCHHHHHHHHHHHhC-CCCcEEEE-ccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEE
Confidence 358999999999999999994 55777555 4999999999999999999999999999999999999997655443
No 33
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.43 E-value=8.2e-13 Score=98.02 Aligned_cols=84 Identities=19% Similarity=0.184 Sum_probs=73.9
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCC-eEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQD-SVLIQY 80 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~-~v~v~~ 80 (105)
..++|+++.++|..+++.|++ +...+||+|.+.+++|+|++.+++||++.|+.+...+.|++||++|.+..+ .+.||.
T Consensus 372 ~~i~G~~~~~eR~~i~~~~~~-~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D 450 (501)
T PHA02558 372 YYVSGEVDTEDRNEMKKIAEG-GKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWD 450 (501)
T ss_pred EEEeCCCCHHHHHHHHHHHhC-CCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEE
Confidence 368999999999999999984 456677888799999999999999999999999999999999999998764 789999
Q ss_pred EeeCCC
Q psy12190 81 LVAKQT 86 (105)
Q Consensus 81 l~~~~s 86 (105)
++..-+
T Consensus 451 ~vD~~~ 456 (501)
T PHA02558 451 IIDDLS 456 (501)
T ss_pred eecccc
Confidence 996543
No 34
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.43 E-value=4e-13 Score=98.49 Aligned_cols=80 Identities=25% Similarity=0.373 Sum_probs=68.2
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..+||+++.++|+.+++.|++ +..++||+ +++++.|+|++.+++||++++|.++..|.|++||++|.|+.. ..+.+
T Consensus 270 ~~~hg~~~~~eR~~~l~~F~~-g~~~vLVa-Tdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G--~ai~l 345 (460)
T PRK11776 270 LALHGDLEQRDRDQVLVRFAN-RSCSVLVA-TDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKG--LALSL 345 (460)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-CCCcEEEE-ecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcc--eEEEE
Confidence 358999999999999999995 55677555 599999999999999999999999999999999999999664 44555
Q ss_pred eeCC
Q psy12190 82 VAKQ 85 (105)
Q Consensus 82 ~~~~ 85 (105)
+..+
T Consensus 346 ~~~~ 349 (460)
T PRK11776 346 VAPE 349 (460)
T ss_pred Echh
Confidence 5554
No 35
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=6.1e-13 Score=98.97 Aligned_cols=92 Identities=18% Similarity=0.316 Sum_probs=74.5
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..+||++++++|.+.++.|+ ++...+||++ ++++.|||++..++||+||+|.++..|.||+||.+|.|.+ -.-+.|
T Consensus 301 ~~lhG~l~q~~R~~~l~~F~-~g~~~vLVaT-DvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~--G~ai~f 376 (513)
T COG0513 301 AALHGDLPQEERDRALEKFK-DGELRVLVAT-DVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRK--GVAISF 376 (513)
T ss_pred EEecCCCCHHHHHHHHHHHH-cCCCCEEEEe-chhhccCCccccceeEEccCCCCHHHheeccCccccCCCC--CeEEEE
Confidence 46899999999999999999 5667786665 9999999999999999999999999999999999999944 345555
Q ss_pred eeCCCHHHHHHHHHHhh
Q psy12190 82 VAKQTADDYLWPLVMTK 98 (105)
Q Consensus 82 ~~~~s~d~~i~~~~~~K 98 (105)
+.+ .-|...+..++..
T Consensus 377 v~~-~~e~~~l~~ie~~ 392 (513)
T COG0513 377 VTE-EEEVKKLKRIEKR 392 (513)
T ss_pred eCc-HHHHHHHHHHHHH
Confidence 554 2244444444443
No 36
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.42 E-value=1.2e-12 Score=96.45 Aligned_cols=88 Identities=20% Similarity=0.317 Sum_probs=71.1
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..++|.++.++|.++++.|++ +...+| +++++++.|+|++.+++||++++|++...+.|+.||++|.|+.-. .+.+
T Consensus 363 ~~~~g~~~~~~R~~~~~~Fr~-G~~~vL-vaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~--~i~~ 438 (475)
T PRK01297 363 AQLSGDVPQHKRIKTLEGFRE-GKIRVL-VATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGV--SISF 438 (475)
T ss_pred EEEECCCCHHHHHHHHHHHhC-CCCcEE-EEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCce--EEEE
Confidence 468999999999999999995 446675 456999999999999999999999999999999999999997643 3444
Q ss_pred eeCCCHHHHHHHHH
Q psy12190 82 VAKQTADDYLWPLV 95 (105)
Q Consensus 82 ~~~~s~d~~i~~~~ 95 (105)
+.++ |...+...
T Consensus 439 ~~~~--d~~~~~~~ 450 (475)
T PRK01297 439 AGED--DAFQLPEI 450 (475)
T ss_pred ecHH--HHHHHHHH
Confidence 4443 44444443
No 37
>KOG0328|consensus
Probab=99.42 E-value=9.5e-13 Score=91.05 Aligned_cols=80 Identities=21% Similarity=0.350 Sum_probs=68.9
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..+||.++.++|.+++.+|+. ++.+| |+++++-+.|++.+.++.||+||+|-|...|.+|+||.+|+|.+ -....|
T Consensus 294 ssmHGDm~qkERd~im~dFRs-g~Srv-LitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRk--GvainF 369 (400)
T KOG0328|consen 294 SSMHGDMEQKERDKIMNDFRS-GKSRV-LITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRK--GVAINF 369 (400)
T ss_pred eeccCCcchhHHHHHHHHhhc-CCceE-EEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCc--ceEEEE
Confidence 368999999999999999995 44567 55669999999999999999999999999999999999999954 455666
Q ss_pred eeCC
Q psy12190 82 VAKQ 85 (105)
Q Consensus 82 ~~~~ 85 (105)
+...
T Consensus 370 Vk~~ 373 (400)
T KOG0328|consen 370 VKSD 373 (400)
T ss_pred ecHH
Confidence 6654
No 38
>PTZ00424 helicase 45; Provisional
Probab=99.41 E-value=8.7e-13 Score=94.81 Aligned_cols=90 Identities=18% Similarity=0.250 Sum_probs=72.3
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..+||+++.++|..+++.|++ +..++| ++++++++|+|++.+++||++++|.+...+.|++||++|.|.. -.++.+
T Consensus 295 ~~~h~~~~~~~R~~i~~~f~~-g~~~vL-vaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~--G~~i~l 370 (401)
T PTZ00424 295 SCMHGDMDQKDRDLIMREFRS-GSTRVL-ITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRK--GVAINF 370 (401)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-CCCCEE-EEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCC--ceEEEE
Confidence 358999999999999999995 556775 5559999999999999999999999999999999999999854 445556
Q ss_pred eeCCCHHHHHHHHHHh
Q psy12190 82 VAKQTADDYLWPLVMT 97 (105)
Q Consensus 82 ~~~~s~d~~i~~~~~~ 97 (105)
+.+. |...+...++
T Consensus 371 ~~~~--~~~~~~~~e~ 384 (401)
T PTZ00424 371 VTPD--DIEQLKEIER 384 (401)
T ss_pred EcHH--HHHHHHHHHH
Confidence 6654 3334444433
No 39
>KOG0330|consensus
Probab=99.40 E-value=9.9e-13 Score=93.86 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=70.4
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
.+++|.++...|...++.|+. +...+|+ ++++++.|||.+.+++||+||.|-+...|.+|.||+.|.| ++-.+..|
T Consensus 328 ~~LhGqmsq~~Rlg~l~~Fk~-~~r~iLv-~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~Itl 403 (476)
T KOG0330|consen 328 IPLHGQMSQSKRLGALNKFKA-GARSILV-CTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITL 403 (476)
T ss_pred ecccchhhHHHHHHHHHHHhc-cCCcEEE-ecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEE
Confidence 468999999999999999994 5567755 5599999999999999999999999999999999999999 66677777
Q ss_pred eeC
Q psy12190 82 VAK 84 (105)
Q Consensus 82 ~~~ 84 (105)
++.
T Consensus 404 Vtq 406 (476)
T KOG0330|consen 404 VTQ 406 (476)
T ss_pred Eeh
Confidence 876
No 40
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.38 E-value=1.3e-12 Score=98.30 Aligned_cols=73 Identities=19% Similarity=0.349 Sum_probs=64.8
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSV 76 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v 76 (105)
..+||+++..+|..+++.|++ +...|||+ +++++.|+|++.+++||++++|+++..|.|++||++|.|....+
T Consensus 285 ~~lhg~l~~~eR~~il~~Fr~-G~~~VLVa-Tdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~a 357 (572)
T PRK04537 285 GVLSGDVPQKKRESLLNRFQK-GQLEILVA-TDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDA 357 (572)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-CCCeEEEE-ehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceE
Confidence 468999999999999999995 55677554 59999999999999999999999999999999999999976544
No 41
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.38 E-value=1.7e-12 Score=98.25 Aligned_cols=73 Identities=23% Similarity=0.282 Sum_probs=64.3
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSV 76 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v 76 (105)
..+||+++.++|.++++.|.. +...|++ ++.+++.|+|+++++.||++++|.+...+.|++||++|.|....+
T Consensus 264 ~~~Ha~l~~~~R~~i~~~F~~-g~~~VLV-aT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ 336 (607)
T PRK11057 264 AAYHAGLDNDVRADVQEAFQR-DDLQIVV-ATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEA 336 (607)
T ss_pred EEecCCCCHHHHHHHHHHHHC-CCCCEEE-EechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceE
Confidence 368999999999999999985 4466754 558999999999999999999999999999999999999976443
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.36 E-value=2.6e-12 Score=96.84 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=65.2
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVL 77 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~ 77 (105)
..+||+++.++|..+++.|..+ .+.++ ++|.+.+.|+|+++++.||++++|.+...+.|++||++|.|....+.
T Consensus 252 ~~~H~~l~~~~R~~i~~~F~~g-~~~vl-VaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 252 LAYHAGLSNKVRAENQEDFLYD-DVKVM-VATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred EEEECCCCHHHHHHHHHHHHcC-CCcEE-EEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEE
Confidence 4689999999999999999854 46674 55599999999999999999999999999999999999999765543
No 43
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.36 E-value=2.5e-12 Score=101.71 Aligned_cols=77 Identities=25% Similarity=0.273 Sum_probs=67.3
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQY 80 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~ 80 (105)
..+||+++.++|..+.+.|.. +.+.||+ ++.++|.|||+++++.||++++|.+...|.|++||++|.|..-.+..|+
T Consensus 708 ~~YHAGLs~eeR~~vqe~F~~-Gei~VLV-ATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 708 AFYHGSMDPAQRAFVQKQWSK-DEINIIC-ATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred eeeeCCCCHHHHHHHHHHHhc-CCCcEEE-EechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 468999999999999999995 4467754 5599999999999999999999999999999999999999886555543
No 44
>KOG0348|consensus
Probab=99.35 E-value=4.7e-12 Score=93.49 Aligned_cols=78 Identities=27% Similarity=0.411 Sum_probs=68.6
Q ss_pred CEEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEE
Q psy12190 1 YIRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQY 80 (105)
Q Consensus 1 ~~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~ 80 (105)
|.++||+|++++|...+..|..+... | ++++++++.||||+.+..||-|++|..+..|.+|+||..|+|-+..--.|-
T Consensus 474 ~~rLHGsm~QeeRts~f~~Fs~~~~~-V-LLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL 551 (708)
T KOG0348|consen 474 FYRLHGSMEQEERTSVFQEFSHSRRA-V-LLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFL 551 (708)
T ss_pred EEEecCchhHHHHHHHHHhhccccce-E-EEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEe
Confidence 67999999999999999999966544 5 556699999999999999999999999999999999999999876554443
No 45
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.33 E-value=1.2e-11 Score=94.10 Aligned_cols=74 Identities=15% Similarity=0.313 Sum_probs=65.0
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVL 77 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~ 77 (105)
..++|.++..+|..+++.|+. +...+| +++++++.|+|++.+++||++|+|.++..|.|++||++|.|..-.+.
T Consensus 273 ~~lhgd~~q~~R~~il~~Fr~-G~~~IL-VATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai 346 (629)
T PRK11634 273 AALNGDMNQALREQTLERLKD-GRLDIL-IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRAL 346 (629)
T ss_pred EEeeCCCCHHHHHHHHHHHhC-CCCCEE-EEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEE
Confidence 358999999999999999995 556674 55599999999999999999999999999999999999999765433
No 46
>KOG0333|consensus
Probab=99.31 E-value=9.5e-12 Score=91.68 Aligned_cols=74 Identities=19% Similarity=0.297 Sum_probs=65.6
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVL 77 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~ 77 (105)
+++||+.+.++|+.++..|++ +...||+++ +++|.|+|.+++++||+||..-+-..|.++|||.+|.|+.-.+.
T Consensus 545 ~tlHg~k~qeQRe~aL~~fr~-~t~dIlVaT-DvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gtai 618 (673)
T KOG0333|consen 545 TTLHGGKSQEQRENALADFRE-GTGDILVAT-DVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAI 618 (673)
T ss_pred EEeeCCccHHHHHHHHHHHHh-cCCCEEEEe-cccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeE
Confidence 579999999999999999995 445565555 99999999999999999999999999999999999999775543
No 47
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.27 E-value=2e-11 Score=94.30 Aligned_cols=89 Identities=21% Similarity=0.231 Sum_probs=73.9
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEEe
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYLV 82 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l~ 82 (105)
.++|++++++|.++.++|++ +..++ |++|++++.|+|+...++||+++.|-+...+.|++||++|.|+.- ..+.+.
T Consensus 308 ~~hgg~~~~eR~~ie~~f~~-G~i~v-LVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g--~ai~v~ 383 (742)
T TIGR03817 308 AYRAGYLPEDRRELERALRD-GELLG-VATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGA--LVVLVA 383 (742)
T ss_pred heecCCCHHHHHHHHHHHHc-CCceE-EEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCc--EEEEEe
Confidence 47999999999999999995 55677 566699999999999999999999999999999999999999654 344555
Q ss_pred eCCCHHHHHHHHH
Q psy12190 83 AKQTADDYLWPLV 95 (105)
Q Consensus 83 ~~~s~d~~i~~~~ 95 (105)
..+..|...+...
T Consensus 384 ~~~~~d~~~~~~~ 396 (742)
T TIGR03817 384 RDDPLDTYLVHHP 396 (742)
T ss_pred CCChHHHHHHhCH
Confidence 5566777665533
No 48
>KOG0335|consensus
Probab=99.20 E-value=7.8e-11 Score=86.26 Aligned_cols=94 Identities=17% Similarity=0.194 Sum_probs=74.2
Q ss_pred CEEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEE
Q psy12190 1 YIRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQY 80 (105)
Q Consensus 1 ~~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~ 80 (105)
|..+||..+..+|.+.++.|+. ++..++|++ .+++.|||.+.+.|||+||.|-+...|.+||||.+|.|+.-..+.+.
T Consensus 364 ~~sIhg~~tq~er~~al~~Fr~-g~~pvlVaT-~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~ 441 (482)
T KOG0335|consen 364 AKSIHGDRTQIEREQALNDFRN-GKAPVLVAT-NVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFF 441 (482)
T ss_pred ceeecchhhhhHHHHHHHHhhc-CCcceEEEe-hhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEe
Confidence 4679999999999999999995 556675555 99999999999999999999999999999999999999885444333
Q ss_pred EeeCCCHHHHHHHHHH
Q psy12190 81 LVAKQTADDYLWPLVM 96 (105)
Q Consensus 81 l~~~~s~d~~i~~~~~ 96 (105)
=-...++-+.+.+.+.
T Consensus 442 n~~~~~i~~~L~~~l~ 457 (482)
T KOG0335|consen 442 NEKNQNIAKALVEILT 457 (482)
T ss_pred ccccchhHHHHHHHHH
Confidence 2222235555555544
No 49
>PF13871 Helicase_C_4: Helicase_C-like
Probab=99.19 E-value=9.1e-11 Score=81.24 Aligned_cols=88 Identities=24% Similarity=0.321 Sum_probs=72.9
Q ss_pred HHHHHhccCCCeeEEEEecccceeccccccc--------CeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEEeeCCC
Q psy12190 15 SVVDQFQYEDKFRVAVLSITAANSGITLTAA--------NLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYLVAKQT 86 (105)
Q Consensus 15 ~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~--------~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l~~~~s 86 (105)
...+.|+++. ..|+|+| ++++.|++|+.- ...|.+++||+.....|-.||+||.||..+..+..+++.-.
T Consensus 52 ~e~~~F~~g~-k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~ 129 (278)
T PF13871_consen 52 AEKQAFMDGE-KDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLP 129 (278)
T ss_pred HHHHHHhCCC-ceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCH
Confidence 5667999654 5677887 999999999943 34578999999999999999999999998766666777778
Q ss_pred HHHHHHHHHHhhhhcCCC
Q psy12190 87 ADDYLWPLVMTKLDVPSP 104 (105)
Q Consensus 87 ~d~~i~~~~~~K~~~~~~ 104 (105)
.|.+....+.+|.....+
T Consensus 130 gE~Rfas~va~rL~sLgA 147 (278)
T PF13871_consen 130 GERRFASTVARRLESLGA 147 (278)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 899999999999876654
No 50
>KOG0345|consensus
Probab=99.18 E-value=6.4e-11 Score=86.35 Aligned_cols=76 Identities=20% Similarity=0.369 Sum_probs=66.3
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQ 79 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~ 79 (105)
+.+||.++...|.+.++.|.+..+ .+ +.++++++.|||++..+.||.+|||-+|+...+|.||..|.|.....-|+
T Consensus 285 ~~iHGK~~q~~R~k~~~~F~~~~~-~v-l~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivf 360 (567)
T KOG0345|consen 285 FSIHGKMSQKARAKVLEAFRKLSN-GV-LFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVF 360 (567)
T ss_pred EEecchhcchhHHHHHHHHHhccC-ce-EEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEE
Confidence 579999999999999999997443 34 55669999999999999999999999999999999999999987554444
No 51
>KOG0336|consensus
Probab=99.16 E-value=1.1e-10 Score=84.43 Aligned_cols=91 Identities=14% Similarity=0.259 Sum_probs=72.5
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEEe
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYLV 82 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l~ 82 (105)
.+||.-.+.+|+..++.|+ .+.+++|+.+ +.++.||+++...||++||.|-|-..|.+++||.+|.|.+..- ..++
T Consensus 494 ~lHG~r~Q~DrE~al~~~k-sG~vrILvaT-DlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~s--is~l 569 (629)
T KOG0336|consen 494 SLHGNREQSDREMALEDFK-SGEVRILVAT-DLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTS--ISFL 569 (629)
T ss_pred hccCChhhhhHHHHHHhhh-cCceEEEEEe-chhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcce--EEEE
Confidence 4789999999999999999 5668886555 9999999999999999999999999999999999999976432 2333
Q ss_pred eCC--CHHHHHHHHHHh
Q psy12190 83 AKQ--TADDYLWPLVMT 97 (105)
Q Consensus 83 ~~~--s~d~~i~~~~~~ 97 (105)
+.+ ++-+.+.+++++
T Consensus 570 t~~D~~~a~eLI~ILe~ 586 (629)
T KOG0336|consen 570 TRNDWSMAEELIQILER 586 (629)
T ss_pred ehhhHHHHHHHHHHHHH
Confidence 333 455555555543
No 52
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.16 E-value=3.4e-10 Score=86.18 Aligned_cols=75 Identities=20% Similarity=0.323 Sum_probs=62.9
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCC-CcChHhHHHHhhhccCCCCeEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFW-NPGILTQAEDRAHRIGQQDSVLI 78 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~w-n~~~~~Q~~gR~~R~Gq~~~v~v 78 (105)
..+||+++.++|.++++.|++ +..++| +++.+.+.|+|+++++.||+++++. +.+.+.|+.||++|.|..-.+.+
T Consensus 486 ~~lHG~m~~~eR~~i~~~F~~-g~~~IL-VaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il 561 (630)
T TIGR00643 486 GLLHGRMKSDEKEAVMEEFRE-GEVDIL-VATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLL 561 (630)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-CCCCEE-EECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEE
Confidence 368999999999999999995 446675 5558999999999999999999884 67788899999999986654443
No 53
>KOG0332|consensus
Probab=99.15 E-value=2.3e-10 Score=81.64 Aligned_cols=82 Identities=22% Similarity=0.355 Sum_probs=65.9
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCC------CcChHhHHHHhhhccCCCCeE
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFW------NPGILTQAEDRAHRIGQQDSV 76 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~w------n~~~~~Q~~gR~~R~Gq~~~v 76 (105)
.+||.+..++|.+++++|+++. .+|| +++.+++.|+|.+.++.||+||+|- ++..|.+|+||.+|+|.+.
T Consensus 359 ~l~G~l~~~~R~~ii~~Fr~g~-~kVL-itTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG-- 434 (477)
T KOG0332|consen 359 LLHGDLTVEQRAAIIDRFREGK-EKVL-ITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKG-- 434 (477)
T ss_pred EeeccchhHHHHHHHHHHhcCc-ceEE-EEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccc--
Confidence 5799999999999999999544 5674 5569999999999999999999985 5678889999999999543
Q ss_pred EEEEEe-eCCCHH
Q psy12190 77 LIQYLV-AKQTAD 88 (105)
Q Consensus 77 ~v~~l~-~~~s~d 88 (105)
-.+.++ .+++.+
T Consensus 435 ~a~n~v~~~~s~~ 447 (477)
T KOG0332|consen 435 LAINLVDDKDSMN 447 (477)
T ss_pred eEEEeecccCcHH
Confidence 333455 444443
No 54
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.14 E-value=3.2e-10 Score=89.01 Aligned_cols=76 Identities=22% Similarity=0.156 Sum_probs=64.4
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccC-CCCeEEEEE
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIG-QQDSVLIQY 80 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~G-q~~~v~v~~ 80 (105)
..||+++.++|..+.+.|++ +..+++ ++|++++.|+|++.++.||++++|.+...+.|++||++|.+ ......++-
T Consensus 319 ~hHg~ls~~~R~~ve~~fk~-G~i~vL-VaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 319 AHHSSLSREVRLEVEEKLKR-GELKVV-VSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred eeeCCCCHHHHHHHHHHHHc-CCCeEE-EECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 57999999999999999995 456775 45599999999999999999999999999999999999874 444455554
No 55
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.13 E-value=5.3e-10 Score=85.79 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=61.7
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCC-CcChHhHHHHhhhccCCCCeE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFW-NPGILTQAEDRAHRIGQQDSV 76 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~w-n~~~~~Q~~gR~~R~Gq~~~v 76 (105)
..+||+++.++|.+++++|.+ +...+| +++.+.+.|+|+++++.||+++++. ..+.+.|+.||++|.|....+
T Consensus 509 ~~lHG~m~~~eR~~i~~~F~~-g~~~IL-VaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ 582 (681)
T PRK10917 509 GLLHGRMKPAEKDAVMAAFKA-GEIDIL-VATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYC 582 (681)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-CCCCEE-EECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEE
Confidence 358999999999999999995 446664 5559999999999999999999884 567888999999999865443
No 56
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.12 E-value=3.9e-10 Score=82.76 Aligned_cols=91 Identities=16% Similarity=0.304 Sum_probs=75.4
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhcc-CCCCe--EEEE
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRI-GQQDS--VLIQ 79 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~-Gq~~~--v~v~ 79 (105)
.++|.++.++|.++++.|+.++ ..+ |++++++.+|+|+++++.+|++.|+-++..+.|++||+.|. ..++. +..|
T Consensus 311 ~it~~t~~~eR~~il~~fr~g~-~~~-lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~ 388 (442)
T COG1061 311 AITGETPKEEREAILERFRTGG-IKV-LVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDY 388 (442)
T ss_pred EEECCCCHHHHHHHHHHHHcCC-CCE-EEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEE
Confidence 6899999999999999999755 666 55669999999999999999999999999999999999995 44444 6677
Q ss_pred EEeeCCCHHHHHHHHH
Q psy12190 80 YLVAKQTADDYLWPLV 95 (105)
Q Consensus 80 ~l~~~~s~d~~i~~~~ 95 (105)
.++.+.+.++.+....
T Consensus 389 ~~~~~~~~~~~~~~~~ 404 (442)
T COG1061 389 SLVPDDLGEEDIARRR 404 (442)
T ss_pred EeecCcccccchhhhh
Confidence 7777777666555443
No 57
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.09 E-value=8.1e-10 Score=78.54 Aligned_cols=92 Identities=14% Similarity=0.217 Sum_probs=67.1
Q ss_pred EEEECCCCHHHHHHH----HHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCC---
Q psy12190 2 IRIDGSVGSEERKSV----VDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQD--- 74 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~----~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~--- 74 (105)
..+||+++..+|.+. ++.|.+ +...+ |+++++++.|+|+. ++.+|.+..| +..+.|++||++|.|...
T Consensus 252 ~~~h~~~~~~~r~~~~~~~~~~f~~-~~~~i-lvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~ 326 (358)
T TIGR01587 252 MLLHSRFTEKDRAKKEAELLEEMKK-NEKFV-IVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGEN 326 (358)
T ss_pred EEEECCCCHHHHHHHHHHHHHHhcC-CCCeE-EEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCC
Confidence 468999999999764 888985 44556 55669999999995 7788777655 678999999999999763
Q ss_pred -eEEEEEEeeCC---CHHHHHHHHHHhh
Q psy12190 75 -SVLIQYLVAKQ---TADDYLWPLVMTK 98 (105)
Q Consensus 75 -~v~v~~l~~~~---s~d~~i~~~~~~K 98 (105)
.++|+.....+ ..+.+++++-..+
T Consensus 327 ~~~~v~~~~~~~~~~~~~~~~~~~t~~~ 354 (358)
T TIGR01587 327 FEVYIITIAPEGKLFPYPYELVERTIQK 354 (358)
T ss_pred CeEEEEeecCCCCeecCCHHHHHHHHHH
Confidence 45666555444 3555555554444
No 58
>KOG0342|consensus
Probab=99.09 E-value=1.2e-10 Score=85.16 Aligned_cols=69 Identities=19% Similarity=0.245 Sum_probs=62.5
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCC
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQ 73 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~ 73 (105)
.+||+.++..|..+..+|.+..+. +|+++++++.|+|+++++.|+.++||.+|..|++|+||.+|.|-+
T Consensus 359 eiHgk~~Q~kRT~~~~~F~kaesg--IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~ 427 (543)
T KOG0342|consen 359 EIHGKQKQNKRTSTFFEFCKAESG--ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKE 427 (543)
T ss_pred hhhcCCcccccchHHHHHhhcccc--eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCC
Confidence 479999999999999999976654 566669999999999999999999999999999999999998755
No 59
>KOG0341|consensus
Probab=99.09 E-value=2.3e-10 Score=82.38 Aligned_cols=86 Identities=19% Similarity=0.285 Sum_probs=69.5
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
+.+||+...++|...++.|+.+.+ .||+ .+++++-||+++...|||+||.|-.-.+|.+++||.+|-|.+.-. ..|
T Consensus 449 vaIHGGKDQedR~~ai~afr~gkK-DVLV-ATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiA--TTf 524 (610)
T KOG0341|consen 449 VAIHGGKDQEDRHYAIEAFRAGKK-DVLV-ATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIA--TTF 524 (610)
T ss_pred EEeecCcchhHHHHHHHHHhcCCC-ceEE-EecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCccee--eee
Confidence 578999999999999999996553 5654 559999999999999999999999999999999999999976432 234
Q ss_pred eeCCCHHHHH
Q psy12190 82 VAKQTADDYL 91 (105)
Q Consensus 82 ~~~~s~d~~i 91 (105)
+-+++-+.-+
T Consensus 525 INK~~~esvL 534 (610)
T KOG0341|consen 525 INKNQEESVL 534 (610)
T ss_pred ecccchHHHH
Confidence 4455444333
No 60
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.08 E-value=1.1e-09 Score=82.38 Aligned_cols=75 Identities=21% Similarity=0.275 Sum_probs=65.4
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLI 78 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v 78 (105)
..+||+++.++|+.+-++|.+++ ..+ +++|.+.|.|+|-++...||++++|-+...|.|-+||++|.|..-.+.+
T Consensus 258 ~~YHaGl~~~eR~~~q~~f~~~~-~~i-iVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~ail 332 (590)
T COG0514 258 GAYHAGLSNEERERVQQAFLNDE-IKV-MVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAIL 332 (590)
T ss_pred EEecCCCCHHHHHHHHHHHhcCC-CcE-EEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEE
Confidence 36899999999999999999655 556 4555999999999999999999999999999999999999996654433
No 61
>KOG0344|consensus
Probab=99.08 E-value=3.4e-10 Score=84.06 Aligned_cols=75 Identities=19% Similarity=0.293 Sum_probs=66.1
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCC-CeEEEE
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQ-DSVLIQ 79 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~-~~v~v~ 79 (105)
.+||..+..+|...+++|+. +.+.+|+++ +..+.|+|+.+++.||++|.|-....|.+++||.+|.|+. +.+++|
T Consensus 417 vIh~e~~~~qrde~~~~FR~-g~IwvLicT-dll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfy 492 (593)
T KOG0344|consen 417 VIHGERSQKQRDETMERFRI-GKIWVLICT-DLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFY 492 (593)
T ss_pred eEecccchhHHHHHHHHHhc-cCeeEEEeh-hhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEe
Confidence 57999999999999999995 558886665 9999999999999999999999999999999999999977 444444
No 62
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.07 E-value=1.1e-09 Score=86.30 Aligned_cols=79 Identities=20% Similarity=0.285 Sum_probs=64.5
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCC-CCcChHhHHHHhhhccCCCCeEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELF-WNPGILTQAEDRAHRIGQQDSVLIQY 80 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~-wn~~~~~Q~~gR~~R~Gq~~~v~v~~ 80 (105)
..+||.++.++|.+++++|.+ +...+ |+++.+.+.|+|++++++||+++.+ +..+.+.|+.||++|.|.. -+.|.
T Consensus 690 ~~lHG~m~~~eRe~im~~F~~-Gk~~I-LVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~--g~ail 765 (926)
T TIGR00580 690 AIAHGQMTENELEEVMLEFYK-GEFQV-LVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKK--AYAYL 765 (926)
T ss_pred EEecCCCCHHHHHHHHHHHHc-CCCCE-EEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCC--eEEEE
Confidence 468999999999999999995 44667 4555999999999999999999886 4667888999999999854 45555
Q ss_pred EeeC
Q psy12190 81 LVAK 84 (105)
Q Consensus 81 l~~~ 84 (105)
++..
T Consensus 766 l~~~ 769 (926)
T TIGR00580 766 LYPH 769 (926)
T ss_pred EECC
Confidence 5543
No 63
>KOG0350|consensus
Probab=99.03 E-value=7.6e-10 Score=81.40 Aligned_cols=89 Identities=19% Similarity=0.298 Sum_probs=71.6
Q ss_pred EECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEEee
Q psy12190 4 IDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYLVA 83 (105)
Q Consensus 4 ~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l~~ 83 (105)
++|+.+.+.|.+.+.+|+.+ ..++||+| ++++.|+|+-..+.||+||||-+...|.+|+||..|.||.. +.|.+..
T Consensus 463 ~t~~l~~k~r~k~l~~f~~g-~i~vLIcS-D~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G--~a~tll~ 538 (620)
T KOG0350|consen 463 FTGQLNGKRRYKMLEKFAKG-DINVLICS-DALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDG--YAITLLD 538 (620)
T ss_pred hhhhhhHHHHHHHHHHHhcC-CceEEEeh-hhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCc--eEEEeec
Confidence 67889999999999999954 47787666 99999999999999999999999999999999999999754 4455555
Q ss_pred CCCHHHHHHHHHHhh
Q psy12190 84 KQTADDYLWPLVMTK 98 (105)
Q Consensus 84 ~~s~d~~i~~~~~~K 98 (105)
.. |++.+..+..|
T Consensus 539 ~~--~~r~F~klL~~ 551 (620)
T KOG0350|consen 539 KH--EKRLFSKLLKK 551 (620)
T ss_pred cc--cchHHHHHHHH
Confidence 43 33444443333
No 64
>KOG0343|consensus
Probab=99.02 E-value=1.4e-09 Score=80.92 Aligned_cols=93 Identities=14% Similarity=0.243 Sum_probs=77.8
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..++|.+++..|..+..+|..... ++|.++++++.||+++.++.||.+|.|=+...|.+|.||..|.+......++-.
T Consensus 343 ~~L~G~~~Q~~R~ev~~~F~~~~~--~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~ 420 (758)
T KOG0343|consen 343 LALHGTMSQKKRIEVYKKFVRKRA--VVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLT 420 (758)
T ss_pred eeeccchhHHHHHHHHHHHHHhcc--eEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEc
Confidence 358999999999999999985443 356666999999999999999999999999999999999999997766655543
Q ss_pred eeCCCHHHHHHHHHHhhh
Q psy12190 82 VAKQTADDYLWPLVMTKL 99 (105)
Q Consensus 82 ~~~~s~d~~i~~~~~~K~ 99 (105)
-. -+|++++.++.|.
T Consensus 421 ps---EeE~~l~~Lq~k~ 435 (758)
T KOG0343|consen 421 PS---EEEAMLKKLQKKK 435 (758)
T ss_pred ch---hHHHHHHHHHHcC
Confidence 33 3688888887774
No 65
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.01 E-value=1.9e-09 Score=86.49 Aligned_cols=77 Identities=23% Similarity=0.315 Sum_probs=63.5
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCC-CCcChHhHHHHhhhccCCCCeEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELF-WNPGILTQAEDRAHRIGQQDSVLIQY 80 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~-wn~~~~~Q~~gR~~R~Gq~~~v~v~~ 80 (105)
..+||+++.++|.+++.+|.+ +...+|+ +|.+++.|+|++++++||+.+++ ++.+.+.|+.||++|.|.+- +.|-
T Consensus 839 ~~lHG~m~q~eRe~im~~Fr~-Gk~~VLV-aTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g--~a~l 914 (1147)
T PRK10689 839 AIGHGQMRERELERVMNDFHH-QRFNVLV-CTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA--YAWL 914 (1147)
T ss_pred EEEeCCCCHHHHHHHHHHHHh-cCCCEEE-ECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCce--EEEE
Confidence 468999999999999999995 4567755 55999999999999999987664 67788999999999998654 4444
Q ss_pred Ee
Q psy12190 81 LV 82 (105)
Q Consensus 81 l~ 82 (105)
+.
T Consensus 915 l~ 916 (1147)
T PRK10689 915 LT 916 (1147)
T ss_pred Ee
Confidence 44
No 66
>KOG0326|consensus
Probab=99.00 E-value=5.3e-10 Score=78.72 Aligned_cols=68 Identities=25% Similarity=0.347 Sum_probs=61.6
Q ss_pred EECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCC
Q psy12190 4 IDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQ 73 (105)
Q Consensus 4 ~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~ 73 (105)
+|..|..+.|.++..+|. .+.|+.|+++ +....|+|.+++|.||++|.|-++..|.+++||.+|+|-.
T Consensus 352 iHakM~Q~hRNrVFHdFr-~G~crnLVct-DL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhl 419 (459)
T KOG0326|consen 352 IHAKMAQEHRNRVFHDFR-NGKCRNLVCT-DLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHL 419 (459)
T ss_pred HHHHHHHhhhhhhhhhhh-ccccceeeeh-hhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCc
Confidence 567788999999999999 4668886666 9999999999999999999999999999999999999954
No 67
>KOG0340|consensus
Probab=98.98 E-value=2e-09 Score=76.51 Aligned_cols=76 Identities=18% Similarity=0.385 Sum_probs=65.7
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCC-eEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQD-SVLIQ 79 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~-~v~v~ 79 (105)
..+|+-+++.+|-..+.+|+ .+...+||++ ++++.|||.+.+.-|+++|.|-+|..|.+|.||..|.|... .+-++
T Consensus 282 ~~lHs~m~Q~eR~~aLsrFr-s~~~~iliaT-DVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSiv 358 (442)
T KOG0340|consen 282 VSLHSQMPQKERLAALSRFR-SNAARILIAT-DVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIV 358 (442)
T ss_pred eehhhcchHHHHHHHHHHHh-hcCccEEEEe-chhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEe
Confidence 35789999999999999999 4557776555 99999999999999999999999999999999999999773 34433
No 68
>PRK02362 ski2-like helicase; Provisional
Probab=98.97 E-value=2.9e-09 Score=82.33 Aligned_cols=80 Identities=20% Similarity=0.143 Sum_probs=64.7
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEE----ec-----CCCCcChHhHHHHhhhccCCC
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVF----AE-----LFWNPGILTQAEDRAHRIGQQ 73 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~----~~-----~~wn~~~~~Q~~gR~~R~Gq~ 73 (105)
..||+++.++|..+.+.|++ +..+|| +++..++.|+|++....||. +| .|.+...+.|++||++|.|..
T Consensus 308 ~hHagl~~~eR~~ve~~Fr~-G~i~VL-vaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d 385 (737)
T PRK02362 308 FHHAGLSREHRELVEDAFRD-RLIKVI-SSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLD 385 (737)
T ss_pred eecCCCCHHHHHHHHHHHHc-CCCeEE-EechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 46899999999999999995 567775 55599999999999888875 55 466778899999999999987
Q ss_pred CeEEEEEEeeC
Q psy12190 74 DSVLIQYLVAK 84 (105)
Q Consensus 74 ~~v~v~~l~~~ 84 (105)
..-.++-+...
T Consensus 386 ~~G~~ii~~~~ 396 (737)
T PRK02362 386 PYGEAVLLAKS 396 (737)
T ss_pred CCceEEEEecC
Confidence 65555555544
No 69
>KOG0338|consensus
Probab=98.95 E-value=2e-09 Score=79.50 Aligned_cols=86 Identities=19% Similarity=0.252 Sum_probs=70.4
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEEe
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYLV 82 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l~ 82 (105)
.+||++++++|-..++.|++ ..+.+||++ ++++.|||...+.+||+|+.|-+...|.+|.||..|.|.. -+-..|+
T Consensus 455 ElHGsLtQ~QRlesL~kFk~-~eidvLiaT-DvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRa--GrsVtlv 530 (691)
T KOG0338|consen 455 ELHGSLTQEQRLESLEKFKK-EEIDVLIAT-DVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRA--GRSVTLV 530 (691)
T ss_pred hhcccccHHHHHHHHHHHHh-ccCCEEEEe-chhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccC--cceEEEe
Confidence 37999999999999999994 557786555 9999999999999999999999999999999999999954 3334455
Q ss_pred eCCCHHHHHHHH
Q psy12190 83 AKQTADDYLWPL 94 (105)
Q Consensus 83 ~~~s~d~~i~~~ 94 (105)
.++ |.++++-
T Consensus 531 gE~--dRkllK~ 540 (691)
T KOG0338|consen 531 GES--DRKLLKE 540 (691)
T ss_pred ccc--cHHHHHH
Confidence 554 5555443
No 70
>KOG1123|consensus
Probab=98.94 E-value=7.4e-09 Score=76.69 Aligned_cols=87 Identities=24% Similarity=0.297 Sum_probs=75.6
Q ss_pred EECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCC-CcChHhHHHHhhhccCCC----CeEEE
Q psy12190 4 IDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFW-NPGILTQAEDRAHRIGQQ----DSVLI 78 (105)
Q Consensus 4 ~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~w-n~~~~~Q~~gR~~R~Gq~----~~v~v 78 (105)
++|.++..+|.++++.|+.++.++-+++| ++|-..+||+.|+.+|...... +...+.||.||+.|.-.. -.++.
T Consensus 568 IYG~Tsq~ERm~ILqnFq~n~~vNTIFlS-KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafF 646 (776)
T KOG1123|consen 568 IYGPTSQNERMKILQNFQTNPKVNTIFLS-KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFF 646 (776)
T ss_pred EECCCchhHHHHHHHhcccCCccceEEEe-eccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceee
Confidence 78999999999999999999988888888 9999999999999999999886 456677999999998532 36889
Q ss_pred EEEeeCCCHHHHH
Q psy12190 79 QYLVAKQTADDYL 91 (105)
Q Consensus 79 ~~l~~~~s~d~~i 91 (105)
|.|++++|.|...
T Consensus 647 YSLVS~DTqEM~Y 659 (776)
T KOG1123|consen 647 YSLVSKDTQEMYY 659 (776)
T ss_pred eeeeecchHHHHh
Confidence 9999999887543
No 71
>KOG0354|consensus
Probab=98.91 E-value=7.1e-09 Score=79.42 Aligned_cols=70 Identities=27% Similarity=0.424 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEE
Q psy12190 7 SVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQ 79 (105)
Q Consensus 7 ~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~ 79 (105)
+++..+.+++++.|++ +..++|+++ .+|-+|||...|+-||+||..-||-.+.||.|| +|.-+.+.|.++
T Consensus 457 gmtqk~Q~evl~~Fr~-G~~NvLVAT-SV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~ns~~vll~ 526 (746)
T KOG0354|consen 457 GMTQKEQKEVLDKFRD-GEINVLVAT-SVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRARNSKCVLLT 526 (746)
T ss_pred ccCHHHHHHHHHHHhC-CCccEEEEe-cchhccCCcccccEEEEecCCccHHHHHHHhcc-ccccCCeEEEEE
Confidence 5788899999999995 667886555 999999999999999999999999999999999 665444444333
No 72
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=98.90 E-value=6.8e-09 Score=84.73 Aligned_cols=66 Identities=21% Similarity=0.228 Sum_probs=59.4
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhcc
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRI 70 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~ 70 (105)
..||+++.++|..+.+.|++ +..+++ ++|+++..|||+..++.||+++.|.+...+.|++||++|.
T Consensus 306 ~HHGsLSkeeR~~IE~~fK~-G~LrvL-VATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 306 SHHGSVSKEQRAITEQALKS-GELRCV-VATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred eccccCCHHHHHHHHHHHHh-CCceEE-EeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 36799999999999999995 446774 5559999999999999999999999999999999999986
No 73
>KOG0327|consensus
Probab=98.88 E-value=8e-09 Score=73.73 Aligned_cols=87 Identities=22% Similarity=0.254 Sum_probs=70.6
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..++|.+...+|...+..|+. ++.+| |+++...+.|++++.++-|++|++|-+...|.+++||.+|.|. +.....+
T Consensus 291 s~~~~d~~q~~R~~~~~ef~~-gssrv-lIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~gr--kg~~in~ 366 (397)
T KOG0327|consen 291 SAIHGDMEQNERDTLMREFRS-GSSRV-LITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGR--KGVAINF 366 (397)
T ss_pred EEeecccchhhhhHHHHHhhc-CCceE-EeeccccccccchhhcceeeeeccccchhhhhhhcccccccCC--Cceeeee
Confidence 357899999999999999995 54667 5566999999999999999999999999999999999999994 4445556
Q ss_pred eeCCCHHHHHHHH
Q psy12190 82 VAKQTADDYLWPL 94 (105)
Q Consensus 82 ~~~~s~d~~i~~~ 94 (105)
+++. |++.++.
T Consensus 367 v~~~--d~~~lk~ 377 (397)
T KOG0327|consen 367 VTEE--DVRDLKD 377 (397)
T ss_pred ehHh--hHHHHHh
Confidence 6554 3444433
No 74
>PRK01172 ski2-like helicase; Provisional
Probab=98.81 E-value=3.1e-08 Score=75.99 Aligned_cols=72 Identities=19% Similarity=0.294 Sum_probs=56.7
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCC---------CCcChHhHHHHhhhccCCC
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELF---------WNPGILTQAEDRAHRIGQQ 73 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~---------wn~~~~~Q~~gR~~R~Gq~ 73 (105)
.+||+++.++|..+.+.|++ +..+|| ++|.+++.|+|++. ..||+.+.+ +++..+.|++||++|.|..
T Consensus 290 ~~hagl~~~eR~~ve~~f~~-g~i~VL-vaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d 366 (674)
T PRK01172 290 FHHAGLSNEQRRFIEEMFRN-RYIKVI-VATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYD 366 (674)
T ss_pred EecCCCCHHHHHHHHHHHHc-CCCeEE-EecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 36899999999999999994 557775 55599999999986 567776643 4556778999999999976
Q ss_pred CeEE
Q psy12190 74 DSVL 77 (105)
Q Consensus 74 ~~v~ 77 (105)
....
T Consensus 367 ~~g~ 370 (674)
T PRK01172 367 QYGI 370 (674)
T ss_pred Ccce
Confidence 5533
No 75
>KOG0347|consensus
Probab=98.81 E-value=5e-09 Score=78.02 Aligned_cols=69 Identities=13% Similarity=0.242 Sum_probs=61.4
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCC
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQ 73 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~ 73 (105)
.+|.+|.+..|-+.+++|.+.+++ +|+.+++++.|||.+.+.|||+|..|-....|.+|-||..|.+..
T Consensus 492 ~LHA~M~QKqRLknLEkF~~~~~~--VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~ 560 (731)
T KOG0347|consen 492 PLHASMIQKQRLKNLEKFKQSPSG--VLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSE 560 (731)
T ss_pred hhhHHHHHHHHHHhHHHHhcCCCe--EEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCC
Confidence 578889999999999999976654 455669999999999999999999999999999999999999754
No 76
>PRK00254 ski2-like helicase; Provisional
Probab=98.80 E-value=2e-08 Score=77.56 Aligned_cols=82 Identities=17% Similarity=0.137 Sum_probs=61.6
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEe-------cCC-CCcChHhHHHHhhhccCCCC
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFA-------ELF-WNPGILTQAEDRAHRIGQQD 74 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~-------~~~-wn~~~~~Q~~gR~~R~Gq~~ 74 (105)
..||++++++|..+.+.|++ +..+|+ ++|.+++.|+|++....||.- +.+ .....+.|++||++|.|..+
T Consensus 300 ~hHagl~~~eR~~ve~~F~~-G~i~VL-vaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~ 377 (720)
T PRK00254 300 FHHAGLGRTERVLIEDAFRE-GLIKVI-TATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDE 377 (720)
T ss_pred EeCCCCCHHHHHHHHHHHHC-CCCeEE-EeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCC
Confidence 46899999999999999994 567775 455999999999988777742 222 12346789999999998776
Q ss_pred eEEEEEEeeCCC
Q psy12190 75 SVLIQYLVAKQT 86 (105)
Q Consensus 75 ~v~v~~l~~~~s 86 (105)
.-.++.+.....
T Consensus 378 ~G~~ii~~~~~~ 389 (720)
T PRK00254 378 VGEAIIVATTEE 389 (720)
T ss_pred CceEEEEecCcc
Confidence 656665655443
No 77
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.78 E-value=4.2e-08 Score=75.19 Aligned_cols=87 Identities=18% Similarity=0.249 Sum_probs=66.3
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEec-----CCCCcChHhHHHHhhhccCCCCeEE
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAE-----LFWNPGILTQAEDRAHRIGQQDSVL 77 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~-----~~wn~~~~~Q~~gR~~R~Gq~~~v~ 77 (105)
.+||.++..+|.+++..|.. +...++ +++..++.|++++.++.|+++| .+-+...+.|++||++|.. . -.
T Consensus 471 ~lh~~~~~~eR~~~l~~fr~-G~i~VL-V~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~-~--G~ 545 (655)
T TIGR00631 471 YLHSEIDTLERVEIIRDLRL-GEFDVL-VGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-N--GK 545 (655)
T ss_pred eeeCCCCHHHHHHHHHHHhc-CCceEE-EEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC-C--CE
Confidence 46789999999999999984 556665 4559999999999999999999 4557788999999999973 2 23
Q ss_pred EEEEeeCCC--HHHHHHHH
Q psy12190 78 IQYLVAKQT--ADDYLWPL 94 (105)
Q Consensus 78 v~~l~~~~s--~d~~i~~~ 94 (105)
++.++...| +...+.+.
T Consensus 546 vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 546 VIMYADKITDSMQKAIEET 564 (655)
T ss_pred EEEEEcCCCHHHHHHHHHH
Confidence 444544433 55555554
No 78
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.75 E-value=1.6e-08 Score=78.98 Aligned_cols=79 Identities=19% Similarity=0.284 Sum_probs=62.9
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCC----CCcCh--------------HhHH
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELF----WNPGI--------------LTQA 63 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~----wn~~~--------------~~Q~ 63 (105)
+.+||+++.++|.++++.|.. +..+| |++|+.+..|++++.+++||.++.+ +|+.. +.||
T Consensus 240 ~pLHg~L~~~eq~~~~~~~~~-G~rkV-lVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR 317 (819)
T TIGR01970 240 CPLYGELSLAAQDRAIKPDPQ-GRRKV-VLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQR 317 (819)
T ss_pred EEecCCCCHHHHHHHHhhccc-CCeEE-EEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhh
Confidence 468999999999999999984 44566 5667999999999999999999875 44443 5688
Q ss_pred HHhhhccCCCCeEEEEEEeeCC
Q psy12190 64 EDRAHRIGQQDSVLIQYLVAKQ 85 (105)
Q Consensus 64 ~gR~~R~Gq~~~v~v~~l~~~~ 85 (105)
.||++|. ++-..|+|+++.
T Consensus 318 ~GRAGR~---~~G~cyrL~t~~ 336 (819)
T TIGR01970 318 AGRAGRL---EPGVCYRLWSEE 336 (819)
T ss_pred hhhcCCC---CCCEEEEeCCHH
Confidence 8888777 566678887653
No 79
>KOG4284|consensus
Probab=98.75 E-value=4e-08 Score=74.62 Aligned_cols=78 Identities=24% Similarity=0.333 Sum_probs=66.0
Q ss_pred EECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEEee
Q psy12190 4 IDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYLVA 83 (105)
Q Consensus 4 ~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l~~ 83 (105)
+.|.|+..+|.-+++..+ .-.++| |++++..+.|+|-..+|-||++|+|-+..+|.+||||++|+|... ..|..+..
T Consensus 302 ISgaM~Q~~Rl~a~~~lr-~f~~rI-LVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G-~aVT~~~~ 378 (980)
T KOG4284|consen 302 ISGAMSQKDRLLAVDQLR-AFRVRI-LVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHG-AAVTLLED 378 (980)
T ss_pred eccccchhHHHHHHHHhh-hceEEE-EEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccc-eeEEEecc
Confidence 679999999999999988 455777 566699999999999999999999999999999999999999754 34444443
Q ss_pred C
Q psy12190 84 K 84 (105)
Q Consensus 84 ~ 84 (105)
+
T Consensus 379 ~ 379 (980)
T KOG4284|consen 379 E 379 (980)
T ss_pred c
Confidence 3
No 80
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.72 E-value=1.5e-07 Score=72.17 Aligned_cols=77 Identities=18% Similarity=0.291 Sum_probs=61.3
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecC-----CCCcChHhHHHHhhhccCCCCeEE
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAEL-----FWNPGILTQAEDRAHRIGQQDSVL 77 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~-----~wn~~~~~Q~~gR~~R~Gq~~~v~ 77 (105)
.+||.++..+|..++..|.. +...++ +++..++.|++++.++.|+++|. +-++..+.|++||++|. . .-.
T Consensus 475 ~~h~~~~~~~R~~~l~~f~~-g~i~vl-V~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~ 549 (652)
T PRK05298 475 YLHSDIDTLERVEIIRDLRL-GEFDVL-VGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGK 549 (652)
T ss_pred EEECCCCHHHHHHHHHHHHc-CCceEE-EEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCE
Confidence 56899999999999999984 456664 45599999999999999999996 45778899999999994 3 334
Q ss_pred EEEEeeC
Q psy12190 78 IQYLVAK 84 (105)
Q Consensus 78 v~~l~~~ 84 (105)
++.++..
T Consensus 550 ~i~~~~~ 556 (652)
T PRK05298 550 VILYADK 556 (652)
T ss_pred EEEEecC
Confidence 5555553
No 81
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=98.72 E-value=3.6e-08 Score=76.92 Aligned_cols=76 Identities=17% Similarity=0.260 Sum_probs=58.9
Q ss_pred EEEECCCCHHHHH-----HHHHHhcc----CC------CeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHh
Q psy12190 2 IRIDGSVGSEERK-----SVVDQFQY----ED------KFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDR 66 (105)
Q Consensus 2 ~~~~g~~~~~~r~-----~~~~~F~~----~~------~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR 66 (105)
..+||.+++.+|. +++++|+. +. +.. +|++|++++.|+|+.. ++||+...| ...+.||+||
T Consensus 298 ~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~-ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGR 373 (844)
T TIGR02621 298 ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTV-YLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGR 373 (844)
T ss_pred eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccce-EEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcc
Confidence 4689999999999 78899975 11 133 4677799999999986 888886665 4789999999
Q ss_pred hhccCCCCe--EEEEEE
Q psy12190 67 AHRIGQQDS--VLIQYL 81 (105)
Q Consensus 67 ~~R~Gq~~~--v~v~~l 81 (105)
++|.|.... ++++.+
T Consensus 374 tgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 374 VNRFGELQACQIAVVHL 390 (844)
T ss_pred cCCCCCCCCceEEEEee
Confidence 999998643 444433
No 82
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.71 E-value=5e-08 Score=78.40 Aligned_cols=77 Identities=21% Similarity=0.298 Sum_probs=65.0
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCC---CCeEEEE
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQ---QDSVLIQ 79 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq---~~~v~v~ 79 (105)
.++|+++ ++.+++++|+++..+.+ +++.++.++|+|.+.+++|+++.|+-++..+.|++||+.|... +....|+
T Consensus 736 ~itg~~~--~~~~li~~Fk~~~~p~I-lVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~ 812 (1123)
T PRK11448 736 KITGSID--KPDQLIRRFKNERLPNI-VVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIF 812 (1123)
T ss_pred EEeCCcc--chHHHHHHHhCCCCCeE-EEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEE
Confidence 4778775 57889999987554444 6677999999999999999999999999999999999999865 5667788
Q ss_pred EEe
Q psy12190 80 YLV 82 (105)
Q Consensus 80 ~l~ 82 (105)
.++
T Consensus 813 D~v 815 (1123)
T PRK11448 813 DAV 815 (1123)
T ss_pred ehH
Confidence 766
No 83
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=98.58 E-value=7.4e-08 Score=75.37 Aligned_cols=79 Identities=24% Similarity=0.336 Sum_probs=61.5
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCC----CCc--------------ChHhHH
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELF----WNP--------------GILTQA 63 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~----wn~--------------~~~~Q~ 63 (105)
+.+||+++.++|.++++.|.. +..+| |++|+.+..|++++.+++||..+.+ ++| ..+.||
T Consensus 243 ~~Lhg~l~~~eq~~~~~~~~~-G~rkV-lvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR 320 (812)
T PRK11664 243 CPLYGALSLAEQQKAILPAPA-GRRKV-VLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQR 320 (812)
T ss_pred EEeeCCCCHHHHHHHhccccC-CCeEE-EEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhh
Confidence 468999999999999999974 44566 5666999999999999999997755 322 246777
Q ss_pred HHhhhccCCCCeEEEEEEeeCC
Q psy12190 64 EDRAHRIGQQDSVLIQYLVAKQ 85 (105)
Q Consensus 64 ~gR~~R~Gq~~~v~v~~l~~~~ 85 (105)
.||++|. .+-..|+|+++.
T Consensus 321 ~GRaGR~---~~G~cyrL~t~~ 339 (812)
T PRK11664 321 AGRAGRL---EPGICLHLYSKE 339 (812)
T ss_pred ccccCCC---CCcEEEEecCHH
Confidence 7777776 477788888654
No 84
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=98.55 E-value=2e-07 Score=72.57 Aligned_cols=71 Identities=17% Similarity=0.176 Sum_probs=57.4
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccc---cccC-----eeEEecCCCCcChHhHHHHhhhccCCC
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITL---TAAN-----LVVFAELFWNPGILTQAEDRAHRIGQQ 73 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l---~~~~-----~vi~~~~~wn~~~~~Q~~gR~~R~Gq~ 73 (105)
..++|.++..++..+...++. + .| +++++++|.|+|+ +.+. |||.+++|-++..+.|+.||++|.|.+
T Consensus 456 ~~L~~~~~~~e~~~i~~ag~~-g--~V-lIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~ 531 (790)
T PRK09200 456 NLLNAKNAAKEAQIIAEAGQK-G--AV-TVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDP 531 (790)
T ss_pred EEecCCccHHHHHHHHHcCCC-C--eE-EEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCC
Confidence 357888887777766666652 2 45 4566999999999 5777 999999999999999999999999977
Q ss_pred CeE
Q psy12190 74 DSV 76 (105)
Q Consensus 74 ~~v 76 (105)
-..
T Consensus 532 G~s 534 (790)
T PRK09200 532 GSS 534 (790)
T ss_pred eeE
Confidence 544
No 85
>KOG0349|consensus
Probab=98.54 E-value=2.1e-07 Score=68.19 Aligned_cols=67 Identities=18% Similarity=0.256 Sum_probs=59.2
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccC
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIG 71 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~G 71 (105)
-++|...+.+|.+.++.|+..+ ++.||++ ++++.|++++....+|++.+|.+...|.+++||++|.-
T Consensus 537 clhgDrkP~Erk~nle~Fkk~d-vkflict-dvaargldi~g~p~~invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 537 CLHGDRKPDERKANLESFKKFD-VKFLICT-DVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred EEecCCChhHHHHHHHhhhhcC-eEEEEEe-hhhhccccccCCceEEEEecCcccchhhhhhhccchhh
Confidence 4789999999999999999544 6775555 99999999999999999999999999999999888763
No 86
>KOG0351|consensus
Probab=98.54 E-value=1.5e-07 Score=74.35 Aligned_cols=79 Identities=23% Similarity=0.239 Sum_probs=68.7
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEEe
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYLV 82 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l~ 82 (105)
.+|.+++..+|+.+-.+|..+. .+| ++.+-|.|.|+|-+.+.-||++..|-+...|.|..||++|.|+...+..|+=.
T Consensus 514 ~YHAGl~~~~R~~Vq~~w~~~~-~~V-ivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~ 591 (941)
T KOG0351|consen 514 FYHAGLPPKERETVQKAWMSDK-IRV-IVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGY 591 (941)
T ss_pred hhhcCCCHHHHHHHHHHHhcCC-CeE-EEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecch
Confidence 4789999999999999999555 677 55559999999999999999999999999999999999999999776666544
Q ss_pred e
Q psy12190 83 A 83 (105)
Q Consensus 83 ~ 83 (105)
.
T Consensus 592 ~ 592 (941)
T KOG0351|consen 592 A 592 (941)
T ss_pred h
Confidence 3
No 87
>KOG0339|consensus
Probab=98.54 E-value=1.7e-07 Score=69.61 Aligned_cols=83 Identities=22% Similarity=0.291 Sum_probs=71.2
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..+||++.+.+|.+.+..|+... ..||+++ +++..|++.....+|+++|.--+-..+.|++||.+|.|.+ -..|.|
T Consensus 496 ~llhgdkdqa~rn~~ls~fKkk~-~~Vlvat-DvaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTl 571 (731)
T KOG0339|consen 496 SLLHGDKDQAERNEVLSKFKKKR-KPVLVAT-DVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTL 571 (731)
T ss_pred eeecCchhhHHHHHHHHHHhhcC-CceEEEe-eHhhcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEE
Confidence 46799999999999999999644 4565555 9999999999999999999999999999999999999966 677888
Q ss_pred eeCCCHH
Q psy12190 82 VAKQTAD 88 (105)
Q Consensus 82 ~~~~s~d 88 (105)
+++...+
T Consensus 572 vTeKDa~ 578 (731)
T KOG0339|consen 572 VTEKDAE 578 (731)
T ss_pred echhhHH
Confidence 8875433
No 88
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=98.53 E-value=2.9e-07 Score=70.44 Aligned_cols=71 Identities=15% Similarity=0.160 Sum_probs=54.3
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceeccccc---ccC-----eeEEecCCCCcChHhHHHHhhhccCCC
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLT---AAN-----LVVFAELFWNPGILTQAEDRAHRIGQQ 73 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~---~~~-----~vi~~~~~wn~~~~~Q~~gR~~R~Gq~ 73 (105)
..++|..+ +|++.+..|...+ ..| +++++++|.|+|+. .+. +||+++.|-+...+.|++||++|.|..
T Consensus 501 ~~Lhg~~~--~rE~~ii~~ag~~-g~V-lVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~ 576 (656)
T PRK12898 501 QVLNAKQD--AEEAAIVARAGQR-GRI-TVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDP 576 (656)
T ss_pred EEeeCCcH--HHHHHHHHHcCCC-CcE-EEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCC
Confidence 35778754 5556666665333 345 55669999999998 444 999999999999999999999999976
Q ss_pred CeE
Q psy12190 74 DSV 76 (105)
Q Consensus 74 ~~v 76 (105)
-.+
T Consensus 577 G~s 579 (656)
T PRK12898 577 GSY 579 (656)
T ss_pred eEE
Confidence 443
No 89
>KOG0953|consensus
Probab=98.52 E-value=2.8e-07 Score=68.99 Aligned_cols=81 Identities=25% Similarity=0.315 Sum_probs=61.9
Q ss_pred EEEECCCCHHHHHHHHHHhccCC-CeeEEEEecccceecccccccCeeEEecCC-CC--------cChHhHHHHhhhccC
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYED-KFRVAVLSITAANSGITLTAANLVVFAELF-WN--------PGILTQAEDRAHRIG 71 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~-~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~-wn--------~~~~~Q~~gR~~R~G 71 (105)
+.++|+.|++.|.+-...||++. .++||++| ++.|.|||| +.+.|||+++. +| .+...|..||++|.|
T Consensus 385 aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAs-DAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~ 462 (700)
T KOG0953|consen 385 AVIYGSLPPETRLAQAALFNDPSNECDVLVAS-DAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFG 462 (700)
T ss_pred EEEecCCCCchhHHHHHHhCCCCCccceEEee-ccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccc
Confidence 46899999999999999999743 46676655 999999997 56788888876 22 234459999999998
Q ss_pred CC-CeEEEEEEeeC
Q psy12190 72 QQ-DSVLIQYLVAK 84 (105)
Q Consensus 72 q~-~~v~v~~l~~~ 84 (105)
.+ ..-.|..+..+
T Consensus 463 s~~~~G~vTtl~~e 476 (700)
T KOG0953|consen 463 SKYPQGEVTTLHSE 476 (700)
T ss_pred cCCcCceEEEeeHh
Confidence 87 44455555544
No 90
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=98.48 E-value=8.5e-07 Score=67.56 Aligned_cols=72 Identities=18% Similarity=0.302 Sum_probs=61.4
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCC-CCcChHhHHHHhhhccCCCCeE
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELF-WNPGILTQAEDRAHRIGQQDSV 76 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~-wn~~~~~Q~~gR~~R~Gq~~~v 76 (105)
-+||.++.+++++++.+|++ +...+| +++-+.-.|+|+++|+.+++.+.. +.-+...|--||++|-+...-|
T Consensus 512 L~HGrm~~~eKd~vM~~Fk~-~e~~IL-VaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC 584 (677)
T COG1200 512 LVHGRMKPAEKDAVMEAFKE-GEIDIL-VATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYC 584 (677)
T ss_pred EEecCCChHHHHHHHHHHHc-CCCcEE-EEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEE
Confidence 47999999999999999995 446675 555889999999999999999988 7888999999999997755433
No 91
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=98.45 E-value=6.8e-07 Score=69.10 Aligned_cols=72 Identities=19% Similarity=0.156 Sum_probs=58.9
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccc-------cCeeEEecCCCCcChHhHHHHhhhccCCCCe
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTA-------ANLVVFAELFWNPGILTQAEDRAHRIGQQDS 75 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~-------~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~ 75 (105)
.++|. ..+|+..+-.|.. ....|+| +++++|.|+|+.. .-|||.+++|-+...+.|+.||++|.|..-.
T Consensus 434 ~Lna~--q~~rEa~ii~~ag-~~g~VtI-ATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~ 509 (745)
T TIGR00963 434 VLNAK--NHEREAEIIAQAG-RKGAVTI-ATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGS 509 (745)
T ss_pred EeeCC--hHHHHHHHHHhcC-CCceEEE-EeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcc
Confidence 35555 6789999999984 4456654 5599999999987 6699999999999999999999999998755
Q ss_pred EEE
Q psy12190 76 VLI 78 (105)
Q Consensus 76 v~v 78 (105)
...
T Consensus 510 s~~ 512 (745)
T TIGR00963 510 SRF 512 (745)
T ss_pred eEE
Confidence 443
No 92
>PHA02653 RNA helicase NPH-II; Provisional
Probab=98.44 E-value=8.6e-07 Score=68.25 Aligned_cols=81 Identities=16% Similarity=0.161 Sum_probs=59.7
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecC---C---------CCcChHhHHHHhhhc
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAEL---F---------WNPGILTQAEDRAHR 69 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~---~---------wn~~~~~Q~~gR~~R 69 (105)
..+||+++.. ++.+++|..++..+| |++|+.++.|++++.+++||.++. | .+...+.||.||++|
T Consensus 425 ~~LHG~Lsq~--eq~l~~ff~~gk~kI-LVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR 501 (675)
T PHA02653 425 YIIHGKVPNI--DEILEKVYSSKNPSI-IISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGR 501 (675)
T ss_pred EeccCCcCHH--HHHHHHHhccCceeE-EeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCC
Confidence 4689999864 567777743455666 566699999999999999999972 2 155567788888877
Q ss_pred cCCCCeEEEEEEeeCCCHH
Q psy12190 70 IGQQDSVLIQYLVAKQTAD 88 (105)
Q Consensus 70 ~Gq~~~v~v~~l~~~~s~d 88 (105)
. ++-..|+|+++....
T Consensus 502 ~---~~G~c~rLyt~~~~~ 517 (675)
T PHA02653 502 V---SPGTYVYFYDLDLLK 517 (675)
T ss_pred C---CCCeEEEEECHHHhH
Confidence 7 467778888776543
No 93
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.37 E-value=5.8e-07 Score=72.95 Aligned_cols=77 Identities=16% Similarity=0.228 Sum_probs=59.2
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCC-----------------C-CcChHhHH
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELF-----------------W-NPGILTQA 63 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~-----------------w-n~~~~~Q~ 63 (105)
..+||+++.++|.++++.+ +..+| |++|+++..|++++...+||..+.. | +...+.||
T Consensus 310 lpLhg~Ls~~eQ~~vf~~~---~~rkI-VLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QR 385 (1283)
T TIGR01967 310 LPLYARLSNKEQQRVFQPH---SGRRI-VLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQR 385 (1283)
T ss_pred EeccCCCCHHHHHHHhCCC---CCceE-EEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHH
Confidence 4689999999999885443 23345 6777999999999999999987732 1 33577899
Q ss_pred HHhhhccCCCCeEEEEEEeeCC
Q psy12190 64 EDRAHRIGQQDSVLIQYLVAKQ 85 (105)
Q Consensus 64 ~gR~~R~Gq~~~v~v~~l~~~~ 85 (105)
.||++|.| +-..|+|+++.
T Consensus 386 aGRAGR~~---~G~cyRLyte~ 404 (1283)
T TIGR01967 386 KGRCGRVA---PGICIRLYSEE 404 (1283)
T ss_pred hhhhCCCC---CceEEEecCHH
Confidence 99999987 55677888754
No 94
>KOG0334|consensus
Probab=98.34 E-value=1.2e-06 Score=69.00 Aligned_cols=75 Identities=16% Similarity=0.273 Sum_probs=63.9
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEE
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQ 79 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~ 79 (105)
.+||+.+..+|..++++|+++. +.+ |+.++.++.||++..-..||+|+.|-....|.+|.||.+|.|.+.....|
T Consensus 642 slHGgv~q~dR~sti~dfK~~~-~~L-LvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtF 716 (997)
T KOG0334|consen 642 SLHGGVDQHDRSSTIEDFKNGV-VNL-LVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTF 716 (997)
T ss_pred hhcCCCchHHHHhHHHHHhccC-ceE-EEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEE
Confidence 4899999999999999999544 555 55558899999999999999999998888899999999999988744333
No 95
>KOG0352|consensus
Probab=98.23 E-value=1.5e-06 Score=63.70 Aligned_cols=78 Identities=17% Similarity=0.174 Sum_probs=67.4
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEEe
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYLV 82 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l~ 82 (105)
.+|.++...+|..+-+.|-+++.+ | |+.+.+.|.|+|-+++..||+++++-|..-|.|--||++|.|-..-+++|+--
T Consensus 284 AYHAGLK~~ERTeVQe~WM~~~~P-v-I~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR 361 (641)
T KOG0352|consen 284 AYHAGLKKKERTEVQEKWMNNEIP-V-IAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSR 361 (641)
T ss_pred HHhcccccchhHHHHHHHhcCCCC-E-EEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecc
Confidence 357788889999999999876644 5 66669999999999999999999999999999999999999987777777643
No 96
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.21 E-value=3.9e-06 Score=65.46 Aligned_cols=71 Identities=18% Similarity=0.170 Sum_probs=54.3
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceeccccc---ccC-----eeEEecCCCCcChHhHHHHhhhccCCCC
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLT---AAN-----LVVFAELFWNPGILTQAEDRAHRIGQQD 74 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~---~~~-----~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~ 74 (105)
.++|.....++..+...++ . ..| ++++.++|.|+|+. .+. |||.++.|-+...+.|+.||++|.|.+-
T Consensus 469 ~Lna~~~~~Ea~ii~~ag~-~--g~V-tIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G 544 (796)
T PRK12906 469 VLNAKNHAKEAEIIMNAGQ-R--GAV-TIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPG 544 (796)
T ss_pred EecCCcHHHHHHHHHhcCC-C--ceE-EEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCc
Confidence 4567666555555555544 2 235 55559999999995 677 9999999999999999999999999886
Q ss_pred eEE
Q psy12190 75 SVL 77 (105)
Q Consensus 75 ~v~ 77 (105)
...
T Consensus 545 ~s~ 547 (796)
T PRK12906 545 SSR 547 (796)
T ss_pred ceE
Confidence 553
No 97
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=98.20 E-value=3.9e-06 Score=65.25 Aligned_cols=71 Identities=14% Similarity=0.091 Sum_probs=54.5
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceeccccc---------ccCeeEEecCCCCcChHhHHHHhhhccCC
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLT---------AANLVVFAELFWNPGILTQAEDRAHRIGQ 72 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~---------~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq 72 (105)
..++|..+..++..+...|+. ..| +++++++|.|+|++ ..++|+.+++|-+.. ..|+.||++|.|.
T Consensus 452 ~~L~a~~~~~E~~ii~~ag~~---g~V-lIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~ri-d~qr~GRtGRqG~ 526 (762)
T TIGR03714 452 NLLNAQNAAKEAQIIAEAGQK---GAV-TVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRV-DLQLRGRSGRQGD 526 (762)
T ss_pred EEecCCChHHHHHHHHHcCCC---CeE-EEEccccccccCCCCCccccccCCeEEEEecCCCCcHH-HHHhhhcccCCCC
Confidence 357888887777666655542 245 56669999999999 889999999996654 4899999999997
Q ss_pred CCeEE
Q psy12190 73 QDSVL 77 (105)
Q Consensus 73 ~~~v~ 77 (105)
+-...
T Consensus 527 ~G~s~ 531 (762)
T TIGR03714 527 PGSSQ 531 (762)
T ss_pred ceeEE
Confidence 75543
No 98
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=98.15 E-value=3.2e-06 Score=63.90 Aligned_cols=92 Identities=25% Similarity=0.382 Sum_probs=71.7
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEE----ecCCC-CcChHhHHHHhhhccCCCCeEE
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVF----AELFW-NPGILTQAEDRAHRIGQQDSVL 77 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~----~~~~w-n~~~~~Q~~gR~~R~Gq~~~v~ 77 (105)
.+|++++-.+|+.+-..|.... ..+ ++++.+.+.|+|++... ||| +.-.| ++..++|..||++|.+-...-.
T Consensus 469 pYHaGL~y~eRk~vE~~F~~q~-l~~-VVTTAAL~AGVDFPASQ-VIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGk 545 (830)
T COG1202 469 PYHAGLPYKERKSVERAFAAQE-LAA-VVTTAALAAGVDFPASQ-VIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGK 545 (830)
T ss_pred cccCCCcHHHHHHHHHHHhcCC-cce-EeehhhhhcCCCCchHH-HHHHHHHcccccCCHHHHHHHhcccCCCCcccCce
Confidence 5899999999999999998544 444 67779999999998654 443 44556 8889999999999999887778
Q ss_pred EEEEee---------CCCHHHHHHHHHHh
Q psy12190 78 IQYLVA---------KQTADDYLWPLVMT 97 (105)
Q Consensus 78 v~~l~~---------~~s~d~~i~~~~~~ 97 (105)
||-++- ++|-|+.-++++..
T Consensus 546 Vyllvepg~~Y~~~m~~TEdevA~kLL~s 574 (830)
T COG1202 546 VYLLVEPGKKYHASMEETEDEVAFKLLES 574 (830)
T ss_pred EEEEecCChhhcccccccHHHHHHHHhcC
Confidence 887773 46666666666543
No 99
>KOG0346|consensus
Probab=98.13 E-value=5.2e-06 Score=60.93 Aligned_cols=77 Identities=12% Similarity=0.170 Sum_probs=61.2
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecc----------------------------------cceecccccccCe
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSIT----------------------------------AANSGITLTAANL 47 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~----------------------------------~~~~Gl~l~~~~~ 47 (105)
|.+-|.+|...|.-++++||. +...++|++-+ ..+.|+|++.++.
T Consensus 296 ciLNseLP~NSR~Hii~QFNk-G~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~ 374 (569)
T KOG0346|consen 296 CILNSELPANSRCHIIEQFNK-GLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSN 374 (569)
T ss_pred hhhcccccccchhhHHHHhhC-cceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheee
Confidence 345677888899999999994 44566565530 1347999999999
Q ss_pred eEEecCCCCcChHhHHHHhhhccCCCCeEEEE
Q psy12190 48 VVFAELFWNPGILTQAEDRAHRIGQQDSVLIQ 79 (105)
Q Consensus 48 vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~ 79 (105)
|+++|.|-+...|.+|+||..|-|.+..+--|
T Consensus 375 VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSf 406 (569)
T KOG0346|consen 375 VLNFDFPETVTSYIHRVGRTARGNNKGTALSF 406 (569)
T ss_pred eeecCCCCchHHHHHhccccccCCCCCceEEE
Confidence 99999999999999999999999976655443
No 100
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.11 E-value=1.1e-05 Score=60.35 Aligned_cols=81 Identities=25% Similarity=0.314 Sum_probs=59.6
Q ss_pred EEEECCCCHHHH--HHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCC--CC-c---------ChHhHHHHhh
Q psy12190 2 IRIDGSVGSEER--KSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELF--WN-P---------GILTQAEDRA 67 (105)
Q Consensus 2 ~~~~g~~~~~~r--~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~--wn-~---------~~~~Q~~gR~ 67 (105)
.++|+.++..++ +++++.|.+ +...+|+. |++.+.|+|+++++.|++++.+ .+ | ..+.|+.||+
T Consensus 288 ~~~d~d~~~~~~~~~~~l~~f~~-g~~~ILVg-T~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRa 365 (505)
T TIGR00595 288 ARIDSDTTSRKGAHEALLNQFAN-GKADILIG-TQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRA 365 (505)
T ss_pred EEEecccccCccHHHHHHHHHhc-CCCCEEEe-CcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhcc
Confidence 467888776554 889999995 44667554 5889999999999999776654 22 2 3467999999
Q ss_pred hccCCCCeEEEEEEeeC
Q psy12190 68 HRIGQQDSVLIQYLVAK 84 (105)
Q Consensus 68 ~R~Gq~~~v~v~~l~~~ 84 (105)
+|.+....|.+..+..+
T Consensus 366 gR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 366 GRAEDPGQVIIQTYNPN 382 (505)
T ss_pred CCCCCCCEEEEEeCCCC
Confidence 99887777765554443
No 101
>PRK05580 primosome assembly protein PriA; Validated
Probab=98.10 E-value=2.1e-05 Score=60.82 Aligned_cols=80 Identities=23% Similarity=0.236 Sum_probs=60.4
Q ss_pred EEEECCCC--HHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCC--CCc----------ChHhHHHHhh
Q psy12190 2 IRIDGSVG--SEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELF--WNP----------GILTQAEDRA 67 (105)
Q Consensus 2 ~~~~g~~~--~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~--wn~----------~~~~Q~~gR~ 67 (105)
.++|+.++ .++++++++.|.+ +...+||+ |++.+.|+|+++++.|++++.+ -+. ..+.|+.||+
T Consensus 456 ~~~~~d~~~~~~~~~~~l~~f~~-g~~~ILVg-T~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRa 533 (679)
T PRK05580 456 LRIDRDTTRRKGALEQLLAQFAR-GEADILIG-TQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRA 533 (679)
T ss_pred EEEeccccccchhHHHHHHHHhc-CCCCEEEE-ChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhc
Confidence 46778775 4679999999995 45667555 5889999999999999877654 222 3578999999
Q ss_pred hccCCCCeEEEEEEee
Q psy12190 68 HRIGQQDSVLIQYLVA 83 (105)
Q Consensus 68 ~R~Gq~~~v~v~~l~~ 83 (105)
+|.+....|.+...-.
T Consensus 534 gR~~~~g~viiqT~~p 549 (679)
T PRK05580 534 GRAEKPGEVLIQTYHP 549 (679)
T ss_pred cCCCCCCEEEEEeCCC
Confidence 9988777776655443
No 102
>KOG0337|consensus
Probab=98.08 E-value=2.3e-06 Score=62.40 Aligned_cols=79 Identities=22% Similarity=0.220 Sum_probs=65.9
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEEe
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYLV 82 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l~ 82 (105)
-++|++.++.|...+.+|+. ....++++ ++.++.|++.+-.+.||++|.|-++..+.+|.||..|.|. ....|-++
T Consensus 290 ~iysslD~~aRk~~~~~F~~-~k~~~lvv-TdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragr--tg~aYs~V 365 (529)
T KOG0337|consen 290 DIYSSLDQEARKINGRDFRG-RKTSILVV-TDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGR--TGRAYSLV 365 (529)
T ss_pred ccccccChHhhhhccccccC-CccceEEE-ehhhhccCCCccccccccccCCCCCceEEEEecchhhccc--cceEEEEE
Confidence 36889999999999999984 44556554 4999999999999999999999999999999999999994 44556666
Q ss_pred eCC
Q psy12190 83 AKQ 85 (105)
Q Consensus 83 ~~~ 85 (105)
+..
T Consensus 366 ~~~ 368 (529)
T KOG0337|consen 366 AST 368 (529)
T ss_pred ecc
Confidence 543
No 103
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=98.06 E-value=2.3e-05 Score=61.39 Aligned_cols=67 Identities=22% Similarity=0.293 Sum_probs=58.6
Q ss_pred EECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhh-ccCC
Q psy12190 4 IDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAH-RIGQ 72 (105)
Q Consensus 4 ~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~-R~Gq 72 (105)
-|||.|.+.|...-++|+++. .++++++ .+...|+|.-..+.||.+..|-.-+...||+||++ |.|.
T Consensus 284 HHgSlSre~R~~vE~~lk~G~-lravV~T-SSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~ 351 (814)
T COG1201 284 HHGSLSRELRLEVEERLKEGE-LKAVVAT-SSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGE 351 (814)
T ss_pred ecccccHHHHHHHHHHHhcCC-ceEEEEc-cchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCC
Confidence 489999999999999999655 7885555 89999999999999999999999999999999984 4454
No 104
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.05 E-value=3.1e-05 Score=62.23 Aligned_cols=79 Identities=20% Similarity=0.278 Sum_probs=66.0
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCC-CCcChHhHHHHhhhccCCCCeEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELF-WNPGILTQAEDRAHRIGQQDSVLIQY 80 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~-wn~~~~~Q~~gR~~R~Gq~~~v~v~~ 80 (105)
...||.|+..+-++++.+|.+ +...|||++ -..-.|+|.++||++|+-.-+ +.-+...|--||++|-. +..+-|.
T Consensus 833 ~vaHGQM~e~eLE~vM~~F~~-g~~dVLv~T-TIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~--~~AYAYf 908 (1139)
T COG1197 833 AVAHGQMRERELEEVMLDFYN-GEYDVLVCT-TIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSN--KQAYAYF 908 (1139)
T ss_pred EEeecCCCHHHHHHHHHHHHc-CCCCEEEEe-eeeecCcCCCCCceEEEeccccccHHHHHHhccccCCcc--ceEEEEE
Confidence 467999999999999999994 557786666 777899999999999987655 67888899999999876 6677777
Q ss_pred EeeC
Q psy12190 81 LVAK 84 (105)
Q Consensus 81 l~~~ 84 (105)
++..
T Consensus 909 l~p~ 912 (1139)
T COG1197 909 LYPP 912 (1139)
T ss_pred eecC
Confidence 7754
No 105
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.01 E-value=3.6e-05 Score=60.04 Aligned_cols=95 Identities=15% Similarity=0.214 Sum_probs=68.7
Q ss_pred EEEECCCCHHHHHHHHHHhcc---CCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccC--CCCeE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQY---EDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIG--QQDSV 76 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~---~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~G--q~~~v 76 (105)
+-+|+..+..+|.+.++...+ .....+ +++|++.-.|+|+. -.+++.|+. ......||.||++|.| ....+
T Consensus 468 ~LlHSRf~~~dR~~ke~~l~~~~~~~~~~I-vVaTQVIEagvDid--fd~mITe~a-PidSLIQR~GRv~R~g~~~~~~~ 543 (733)
T COG1203 468 LLLHSRFTLKDREEKERELKKLFKQNEGFI-VVATQVIEAGVDID--FDVLITELA-PIDSLIQRAGRVNRHGKKENGKI 543 (733)
T ss_pred EEEecccchhhHHHHHHHHHHHHhccCCeE-EEEeeEEEEEeccc--cCeeeecCC-CHHHHHHHHHHHhhcccccCCce
Confidence 468999999999988885442 233444 66669999999987 344555544 3466789999999999 55677
Q ss_pred EEEEEeeCCCHHHHHHHHHHhhhh
Q psy12190 77 LIQYLVAKQTADDYLWPLVMTKLD 100 (105)
Q Consensus 77 ~v~~l~~~~s~d~~i~~~~~~K~~ 100 (105)
.++...-.+..+.+.++....+..
T Consensus 544 ~v~~~~~~~~~~~~~~~~~~~~~~ 567 (733)
T COG1203 544 YVYNDEERGPYLKYSYEKLEKKLK 567 (733)
T ss_pred eEeecccCCCchhhhhhcchhhhc
Confidence 777777777777777766665544
No 106
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=97.94 E-value=1.7e-05 Score=64.70 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=57.9
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEec---------------CCC---CcChHhHH
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAE---------------LFW---NPGILTQA 63 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~---------------~~w---n~~~~~Q~ 63 (105)
+.+||+++.++|.++++. .+..+| |++|+++..|++++...+||.++ ++- +...+.||
T Consensus 317 lpLhg~Ls~~eQ~~Vf~~---~g~rkI-IVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QR 392 (1294)
T PRK11131 317 LPLYARLSNSEQNRVFQS---HSGRRI-VLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQR 392 (1294)
T ss_pred eecccCCCHHHHHHHhcc---cCCeeE-EEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhh
Confidence 368999999999988765 344555 66779999999999999999975 232 23567788
Q ss_pred HHhhhccCCCCeEEEEEEeeCC
Q psy12190 64 EDRAHRIGQQDSVLIQYLVAKQ 85 (105)
Q Consensus 64 ~gR~~R~Gq~~~v~v~~l~~~~ 85 (105)
.||++|.+ +-..|+|+++.
T Consensus 393 aGRAGR~~---~G~c~rLyte~ 411 (1294)
T PRK11131 393 KGRCGRVS---EGICIRLYSED 411 (1294)
T ss_pred ccccCCCC---CcEEEEeCCHH
Confidence 88888873 56677777654
No 107
>PRK09694 helicase Cas3; Provisional
Probab=97.89 E-value=3.8e-05 Score=60.88 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=51.3
Q ss_pred EEEECCCCHHHH----HHHHHHhccCCCe--eEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCC
Q psy12190 2 IRIDGSVGSEER----KSVVDQFQYEDKF--RVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQ 73 (105)
Q Consensus 2 ~~~~g~~~~~~r----~~~~~~F~~~~~~--~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~ 73 (105)
..+||.++..+| +++++.|..++.. ..+|++|++...|+|+. ++.+|.-..| ...+.|++||++|.|..
T Consensus 591 ~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 591 DLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 368999999988 4678889433321 23467779999999994 6766664444 46789999999999874
No 108
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=97.84 E-value=4.8e-05 Score=60.57 Aligned_cols=66 Identities=18% Similarity=0.156 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHhccCCCeeEEEEecccceecccccc---cC-----eeEEecCCCCcChHhHHHHhhhccCCCCeE
Q psy12190 9 GSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTA---AN-----LVVFAELFWNPGILTQAEDRAHRIGQQDSV 76 (105)
Q Consensus 9 ~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~---~~-----~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v 76 (105)
...+|++.+-.|.. ....| +++|+++|.|+|+.- +. +||..+.+-+...+.|+.||++|.|..-..
T Consensus 631 kq~~REa~Iia~AG-~~g~V-tIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS 704 (1025)
T PRK12900 631 KQHDREAEIVAEAG-QKGAV-TIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGES 704 (1025)
T ss_pred CHHHhHHHHHHhcC-CCCeE-EEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcce
Confidence 56789999999984 44556 455599999999983 33 347888888888899999999999987555
No 109
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=97.65 E-value=6.3e-05 Score=54.04 Aligned_cols=56 Identities=16% Similarity=0.296 Sum_probs=41.5
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhh
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAH 68 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~ 68 (105)
..++|.++..+|.+.. ...+ |+++++++.|+|++.. .|| ++ +-++..+.||+||++
T Consensus 302 ~~l~g~~~~~~R~~~~-------~~~i-LVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 302 GRITGFAPKKDRERAM-------QFDI-LLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EeeecCCCHHHHHHhc-------cCCE-EEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 3578999998887553 2445 5666999999999864 565 56 557888999988864
No 110
>KOG1513|consensus
Probab=97.61 E-value=0.00014 Score=57.15 Aligned_cols=83 Identities=27% Similarity=0.370 Sum_probs=61.8
Q ss_pred HHHhccCCCeeEEEEecccceecccccccCee--------EEecCCCCcChHhHHHHhhhccCCCCeEEEEEEeeCCCHH
Q psy12190 17 VDQFQYEDKFRVAVLSITAANSGITLTAANLV--------VFAELFWNPGILTQAEDRAHRIGQQDSVLIQYLVAKQTAD 88 (105)
Q Consensus 17 ~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~v--------i~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l~~~~s~d 88 (105)
.++|-.+. -.|.|+| .+++.|+.|+.-..| |.+++||+...-+|-.||.||-.|-.......++++=-=|
T Consensus 850 KqrFM~Ge-K~vAIIS-EAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGE 927 (1300)
T KOG1513|consen 850 KQRFMDGE-KLVAIIS-EAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGE 927 (1300)
T ss_pred Hhhhcccc-ceeeeee-hhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccc
Confidence 35677444 4466777 899999999965544 6799999999999999999999999766666666654446
Q ss_pred HHHHHHHHhhhhc
Q psy12190 89 DYLWPLVMTKLDV 101 (105)
Q Consensus 89 ~~i~~~~~~K~~~ 101 (105)
.+....++++++.
T Consensus 928 rRFAS~VAKRLES 940 (1300)
T KOG1513|consen 928 RRFASIVAKRLES 940 (1300)
T ss_pred hHHHHHHHHHHHh
Confidence 6666666655543
No 111
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.47 E-value=0.00057 Score=52.96 Aligned_cols=69 Identities=19% Similarity=0.187 Sum_probs=54.2
Q ss_pred HHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhcc-CC-CCeEEEEEEee
Q psy12190 13 RKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRI-GQ-QDSVLIQYLVA 83 (105)
Q Consensus 13 r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~-Gq-~~~v~v~~l~~ 83 (105)
...++++|++++.+.++|+. ++..+|.|.+.++++++.-|--+. .+.|++||+-|+ +. +....|+.++-
T Consensus 579 ~~~~~~~Fk~~~~~~ilIVv-dmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 579 YYKDLERFKKEENPKLLIVV-DMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred HHHHHHHhcCCCCceEEEEE-cccccccCCCccceEEEecccccc-HHHHHHHHhccccCCCCCCEEEEECcC
Confidence 34789999876677776555 999999999999999988887654 578999999995 43 44567777764
No 112
>PRK09401 reverse gyrase; Reviewed
Probab=97.42 E-value=0.00042 Score=56.65 Aligned_cols=63 Identities=13% Similarity=-0.009 Sum_probs=49.8
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEe---cccceecccccc-cCeeEEecCCC------CcChHhHHHHhhhccC
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLS---ITAANSGITLTA-ANLVVFAELFW------NPGILTQAEDRAHRIG 71 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s---~~~~~~Gl~l~~-~~~vi~~~~~w------n~~~~~Q~~gR~~R~G 71 (105)
.+||++ .+.+++|.+ +.+.|||++ +++++.|||++. .++|||++.|- ....+.++++|.-.+-
T Consensus 360 ~~hg~l-----~~~l~~F~~-G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~~ 432 (1176)
T PRK09401 360 LAISGF-----ERKFEKFEE-GEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSLL 432 (1176)
T ss_pred EEeCcH-----HHHHHHHHC-CCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhhc
Confidence 478888 234699995 557888886 689999999997 89999999997 5566778888886443
No 113
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=97.34 E-value=0.00077 Score=53.24 Aligned_cols=74 Identities=18% Similarity=0.125 Sum_probs=58.5
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceeccccc-c-------------------------------------
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLT-A------------------------------------- 44 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~-~------------------------------------- 44 (105)
.++|. ..+|++.+..|.. ....|+ ++|+++|.|+|+. .
T Consensus 459 vLnak--q~eREa~Iia~Ag-~~g~Vt-IATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G 534 (830)
T PRK12904 459 VLNAK--NHEREAEIIAQAG-RPGAVT-IATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAG 534 (830)
T ss_pred eccCc--hHHHHHHHHHhcC-CCceEE-EecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcC
Confidence 35553 6789999999984 445664 5559999999877 3
Q ss_pred cCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEE
Q psy12190 45 ANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQY 80 (105)
Q Consensus 45 ~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~ 80 (105)
.=|||..+.+-|.....|..||++|.|..-....|-
T Consensus 535 GLhVigTerhesrRid~QlrGRagRQGdpGss~f~l 570 (830)
T PRK12904 535 GLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYL 570 (830)
T ss_pred CCEEEecccCchHHHHHHhhcccccCCCCCceeEEE
Confidence 458898999999999999999999999887666553
No 114
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=97.30 E-value=0.00049 Score=54.66 Aligned_cols=87 Identities=21% Similarity=0.264 Sum_probs=68.1
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCC-CcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFW-NPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~w-n~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
.++|+++.++|.++...|+.+. ..+ ++++.+.-.|+++...+.||....|- ......|+.||++|-+|. .-++..
T Consensus 343 ~~~~~~~~~er~~ie~~~~~g~-~~~-~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~--~l~~~v 418 (851)
T COG1205 343 TYRAGLHREERRRIEAEFKEGE-LLG-VIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQE--SLVLVV 418 (851)
T ss_pred eccccCCHHHHHHHHHHHhcCC-ccE-EecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCC--ceEEEE
Confidence 5678999999999999999544 555 66779999999999999999999887 678889999999999943 222323
Q ss_pred eeCCCHHHHHHH
Q psy12190 82 VAKQTADDYLWP 93 (105)
Q Consensus 82 ~~~~s~d~~i~~ 93 (105)
.-.+.+|..+..
T Consensus 419 ~~~~~~d~yy~~ 430 (851)
T COG1205 419 LRSDPLDSYYLR 430 (851)
T ss_pred eCCCccchhhhh
Confidence 335567766554
No 115
>PRK14701 reverse gyrase; Provisional
Probab=97.29 E-value=0.00064 Score=57.14 Aligned_cols=61 Identities=13% Similarity=0.124 Sum_probs=49.3
Q ss_pred HHHHHHHHhccCCCeeEEEEec---ccceecccccc-cCeeEEecCCC---CcChHhHHH-------------HhhhccC
Q psy12190 12 ERKSVVDQFQYEDKFRVAVLSI---TAANSGITLTA-ANLVVFAELFW---NPGILTQAE-------------DRAHRIG 71 (105)
Q Consensus 12 ~r~~~~~~F~~~~~~~vll~s~---~~~~~Gl~l~~-~~~vi~~~~~w---n~~~~~Q~~-------------gR~~R~G 71 (105)
.|.+.+++|.+ +.+.||+++. +.++.|||++. ..+|||++.|- +...+.|.. +|++|.|
T Consensus 366 ~R~~~l~~F~~-G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g 444 (1638)
T PRK14701 366 KNKKGFDLFEE-GEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEG 444 (1638)
T ss_pred hHHHHHHHHHc-CCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccC
Confidence 38899999995 5577877774 57899999997 99999999997 666555655 8888888
Q ss_pred CC
Q psy12190 72 QQ 73 (105)
Q Consensus 72 q~ 73 (105)
..
T Consensus 445 ~~ 446 (1638)
T PRK14701 445 IP 446 (1638)
T ss_pred Cc
Confidence 64
No 116
>KOG0329|consensus
Probab=97.26 E-value=0.00013 Score=50.66 Aligned_cols=45 Identities=16% Similarity=0.247 Sum_probs=41.1
Q ss_pred EEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCC
Q psy12190 30 VLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQD 74 (105)
Q Consensus 30 l~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~ 74 (105)
++++...|.|++..+.|.+++||.|-++..|.++.+|++|.|.+.
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkg 346 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 346 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhcccccc
Confidence 355688999999999999999999999999999999999999764
No 117
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=97.25 E-value=0.0021 Score=46.41 Aligned_cols=76 Identities=17% Similarity=0.297 Sum_probs=58.6
Q ss_pred HHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCC--CCcChHhHHHHhhhccCCCCeEEEEEEeeCCCHH
Q psy12190 11 EERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELF--WNPGILTQAEDRAHRIGQQDSVLIQYLVAKQTAD 88 (105)
Q Consensus 11 ~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~--wn~~~~~Q~~gR~~R~Gq~~~v~v~~l~~~~s~d 88 (105)
..|.+-+++|++ +...+ |+++.....|+++++.+..++-.-. ++.+...|..||++|.-..-+-.|+.+..--|..
T Consensus 342 ~~R~EkV~~fR~-G~~~l-LiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~ska 419 (441)
T COG4098 342 QHRKEKVEAFRD-GKITL-LITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKA 419 (441)
T ss_pred ccHHHHHHHHHc-CceEE-EEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHH
Confidence 468889999994 54555 5666899999999999998886655 8888999999999998766555666666554433
No 118
>COG1204 Superfamily II helicase [General function prediction only]
Probab=97.24 E-value=0.00033 Score=55.01 Aligned_cols=68 Identities=25% Similarity=0.347 Sum_probs=51.3
Q ss_pred ECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEE----ec-----CCCCcChHhHHHHhhhccCCCC
Q psy12190 5 DGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVF----AE-----LFWNPGILTQAEDRAHRIGQQD 74 (105)
Q Consensus 5 ~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~----~~-----~~wn~~~~~Q~~gR~~R~Gq~~ 74 (105)
|.+++.++|+-+-+.|+ .+.++| |+++...+.|+||+.-..+|= ++ -+-+...+.|..||++|.|=..
T Consensus 321 hAGL~~~~R~~vE~~Fr-~g~ikV-lv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~ 397 (766)
T COG1204 321 HAGLPREDRQLVEDAFR-KGKIKV-LVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDD 397 (766)
T ss_pred ccCCCHHHHHHHHHHHh-cCCceE-EEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCC
Confidence 56789999999999999 566888 556699999999996555532 33 1124566789999999998553
No 119
>COG4889 Predicted helicase [General function prediction only]
Probab=97.22 E-value=0.00053 Score=54.63 Aligned_cols=80 Identities=18% Similarity=0.167 Sum_probs=61.1
Q ss_pred EEECCCCHHHHHHHHHHhcc-CCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCC-eEEEEE
Q psy12190 3 RIDGSVGSEERKSVVDQFQY-EDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQD-SVLIQY 80 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~-~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~-~v~v~~ 80 (105)
.++|.|...+|..++.--+. .++.+-+|.+.+++++|++.+.-+.|||++|--+--...|+.||+-|....+ --+|.-
T Consensus 504 HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIIL 583 (1518)
T COG4889 504 HVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIIL 583 (1518)
T ss_pred cccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEE
Confidence 36899999899666654432 3333334777789999999999999999999988888889999999997654 345555
Q ss_pred Ee
Q psy12190 81 LV 82 (105)
Q Consensus 81 l~ 82 (105)
.+
T Consensus 584 PI 585 (1518)
T COG4889 584 PI 585 (1518)
T ss_pred Ee
Confidence 54
No 120
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=97.08 E-value=0.0018 Score=51.59 Aligned_cols=75 Identities=16% Similarity=0.138 Sum_probs=61.0
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceeccccc-c------------------------------------
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLT-A------------------------------------ 44 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~-~------------------------------------ 44 (105)
..+++.....++..+.+.|+.+ .| +++|+++|.|+|+. .
T Consensus 472 ~vLnak~~q~Ea~iia~Ag~~G---~V-tIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 547 (896)
T PRK13104 472 QVLNAKFHEKEAQIIAEAGRPG---AV-TIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAA 547 (896)
T ss_pred EeecCCCChHHHHHHHhCCCCC---cE-EEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHc
Confidence 3578889999999999999854 24 55569999999876 2
Q ss_pred -cCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEE
Q psy12190 45 -ANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQY 80 (105)
Q Consensus 45 -~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~ 80 (105)
.=|||-.+.+-+.....|..||++|.|..-...+|-
T Consensus 548 GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~l 584 (896)
T PRK13104 548 GGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYL 584 (896)
T ss_pred CCCEEEeeccCchHHHHHHhccccccCCCCCceEEEE
Confidence 347888889989999999999999999887666553
No 121
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=97.04 E-value=0.0016 Score=51.77 Aligned_cols=75 Identities=17% Similarity=0.126 Sum_probs=60.2
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceeccccc-c------------------------------------
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLT-A------------------------------------ 44 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~-~------------------------------------ 44 (105)
..+++..+..++..+.+.|+. +. | ++++.++|.|+|+. .
T Consensus 477 ~vLnak~~~~Ea~ii~~Ag~~-G~--V-tIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G 552 (908)
T PRK13107 477 EVLNAKFHEREAEIVAQAGRT-GA--V-TIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAG 552 (908)
T ss_pred EeccCcccHHHHHHHHhCCCC-Cc--E-EEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcC
Confidence 357788899999999999984 33 4 55569999999977 2
Q ss_pred cCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEE
Q psy12190 45 ANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQY 80 (105)
Q Consensus 45 ~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~ 80 (105)
.=|||-.+.+-+.....|..||++|.|..-....|-
T Consensus 553 GL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~l 588 (908)
T PRK13107 553 GLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYL 588 (908)
T ss_pred CCEEEecccCchHHHHhhhhcccccCCCCCceeEEE
Confidence 347899999999999999999999999886655543
No 122
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=96.99 E-value=0.0018 Score=53.14 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=40.5
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEe---cccceecccccc-cCeeEEecCCC
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLS---ITAANSGITLTA-ANLVVFAELFW 55 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s---~~~~~~Gl~l~~-~~~vi~~~~~w 55 (105)
.+||.++ ++.+++|.+ +...+|+++ +++++.|||++. .++|||+++|-
T Consensus 358 ~lhg~~~----~~~l~~Fr~-G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 358 AYHATKP----KEDYEKFAE-GEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred EEeCCCC----HHHHHHHHc-CCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 5788886 368999995 557888886 589999999997 89999999985
No 123
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.98 E-value=0.0059 Score=46.34 Aligned_cols=93 Identities=16% Similarity=0.172 Sum_probs=69.4
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCC-----CCcChHhHHHHhhhccCCCCeEE
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELF-----WNPGILTQAEDRAHRIGQQDSVL 77 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~-----wn~~~~~Q~~gR~~R~Gq~~~v~ 77 (105)
.+|+....-+|..++.+-+. +...||+. ...+-+|||++.++-|.++|-+ -+.....|-+||+.|--..+-+
T Consensus 475 YlHSdidTlER~eIirdLR~-G~~DvLVG-INLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~GkvI- 551 (663)
T COG0556 475 YLHSDIDTLERVEIIRDLRL-GEFDVLVG-INLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVI- 551 (663)
T ss_pred eeeccchHHHHHHHHHHHhc-CCccEEEe-ehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCCeEE-
Confidence 46788888999999999984 55777554 5899999999999999999965 3778889999999997554433
Q ss_pred EEEEeeCCCHHHHHHHHHHhh
Q psy12190 78 IQYLVAKQTADDYLWPLVMTK 98 (105)
Q Consensus 78 v~~l~~~~s~d~~i~~~~~~K 98 (105)
.|-=..-+|+++.|-+...+.
T Consensus 552 lYAD~iT~sM~~Ai~ET~RRR 572 (663)
T COG0556 552 LYADKITDSMQKAIDETERRR 572 (663)
T ss_pred EEchhhhHHHHHHHHHHHHHH
Confidence 332223345776666655544
No 124
>KOG0949|consensus
Probab=96.97 E-value=0.0016 Score=52.24 Aligned_cols=75 Identities=17% Similarity=0.248 Sum_probs=55.2
Q ss_pred ECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCC-CCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 5 DGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELF-WNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 5 ~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~-wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
|.++....|..+-=-|+ .++..|++ ++...+.|+|+++-..|+-.|.- .||-.|.|+.||++|-|=..--+|..+
T Consensus 969 HaglNr~yR~~VEvLFR-~g~L~Vlf-aT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~Fm 1044 (1330)
T KOG0949|consen 969 HAGLNRKYRSLVEVLFR-QGHLQVLF-ATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFM 1044 (1330)
T ss_pred ccccchHHHHHHHHHhh-cCceEEEE-EeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEE
Confidence 45667777777666777 67777855 55999999999976666555543 799999999999999996544444433
No 125
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.96 E-value=0.0025 Score=41.12 Aligned_cols=64 Identities=19% Similarity=0.298 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhccCCCeeEEEEecc--cceeccccc--ccCeeEEecCCCCcCh-H------------------------
Q psy12190 10 SEERKSVVDQFQYEDKFRVAVLSIT--AANSGITLT--AANLVVFAELFWNPGI-L------------------------ 60 (105)
Q Consensus 10 ~~~r~~~~~~F~~~~~~~vll~s~~--~~~~Gl~l~--~~~~vi~~~~~wn~~~-~------------------------ 60 (105)
..++.++++.|..+++. +|+ ++. ...+|+|++ .+..||+..+|+-+.. .
T Consensus 45 ~~~~~~~l~~~~~~~~~-il~-~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (167)
T PF13307_consen 45 SKSRDELLEEFKRGEGA-ILL-AVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPP 122 (167)
T ss_dssp CCHHHHHHHHHCCSSSE-EEE-EETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHH
T ss_pred cchHHHHHHHHHhccCe-EEE-EEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHH
Confidence 45788999999975543 444 445 789999999 5778899988873321 1
Q ss_pred -----hHHHHhhhccCCCCe
Q psy12190 61 -----TQAEDRAHRIGQQDS 75 (105)
Q Consensus 61 -----~Q~~gR~~R~Gq~~~ 75 (105)
.|++||+-|..+...
T Consensus 123 a~~~l~Qa~GR~iR~~~D~g 142 (167)
T PF13307_consen 123 AIRKLKQAIGRLIRSEDDYG 142 (167)
T ss_dssp HHHHHHHHHHCC--STT-EE
T ss_pred HHHHHhhhcCcceeccCCcE
Confidence 288999998876443
No 126
>KOG0952|consensus
Probab=96.89 E-value=0.0053 Score=49.61 Aligned_cols=78 Identities=15% Similarity=0.177 Sum_probs=59.5
Q ss_pred ECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcCh----------HhHHHHhhhccCCCC
Q psy12190 5 DGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGI----------LTQAEDRAHRIGQQD 74 (105)
Q Consensus 5 ~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~----------~~Q~~gR~~R~Gq~~ 74 (105)
|.++..++|+-.=+.|.. +.++| ++++...+-|+||+.-..+|--.+.|+++. ..|-.||++|..=..
T Consensus 403 hAGm~r~DR~l~E~~F~~-G~i~v-L~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~ 480 (1230)
T KOG0952|consen 403 HAGMLRSDRQLVEKEFKE-GHIKV-LCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDS 480 (1230)
T ss_pred ccccchhhHHHHHHHHhc-CCceE-EEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCC
Confidence 567889999999999994 55777 556699999999998888887777787765 569999999996544
Q ss_pred eEEEEEEeeC
Q psy12190 75 SVLIQYLVAK 84 (105)
Q Consensus 75 ~v~v~~l~~~ 84 (105)
.-..+-+.+.
T Consensus 481 ~G~giIiTt~ 490 (1230)
T KOG0952|consen 481 SGEGIIITTR 490 (1230)
T ss_pred CceEEEEecc
Confidence 4444444443
No 127
>KOG0353|consensus
Probab=96.87 E-value=0.00087 Score=49.04 Aligned_cols=78 Identities=18% Similarity=0.203 Sum_probs=61.4
Q ss_pred EECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhH---------------------
Q psy12190 4 IDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQ--------------------- 62 (105)
Q Consensus 4 ~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q--------------------- 62 (105)
+|..+.|++|..+-..|- .+.+.|++.+ -+.|.|++-+++..||+-.+|-+-..|.|
T Consensus 347 yha~lep~dks~~hq~w~-a~eiqvivat-vafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggs 424 (695)
T KOG0353|consen 347 YHANLEPEDKSGAHQGWI-AGEIQVIVAT-VAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGS 424 (695)
T ss_pred cccccCcccccccccccc-ccceEEEEEE-eeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCc
Confidence 455566777777767776 4557775554 89999999999999999999999999999
Q ss_pred ----------------------HHHhhhccCCCCeEEEEEEee
Q psy12190 63 ----------------------AEDRAHRIGQQDSVLIQYLVA 83 (105)
Q Consensus 63 ----------------------~~gR~~R~Gq~~~v~v~~l~~ 83 (105)
--||++|.|++-++-+|+-..
T Consensus 425 tqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~ 467 (695)
T KOG0353|consen 425 TQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFA 467 (695)
T ss_pred ceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechH
Confidence 457888888888877776553
No 128
>KOG4150|consensus
Probab=96.86 E-value=0.0045 Score=47.58 Aligned_cols=69 Identities=19% Similarity=0.197 Sum_probs=57.5
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCC
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQ 73 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~ 73 (105)
.+.|+-+.++|.++-.+.- +++.+. ++++.+...|++.-.-+.|+....|.+-....|..||++|-...
T Consensus 562 SYRGGY~A~DRRKIE~~~F-~G~L~g-iIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~ 630 (1034)
T KOG4150|consen 562 SYRGGYIAEDRRKIESDLF-GGKLCG-IIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP 630 (1034)
T ss_pred hhcCccchhhHHHHHHHhh-CCeeeE-EEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCC
Confidence 4678888888888766544 455555 56679999999999999999999999999999999999997643
No 129
>KOG0922|consensus
Probab=96.82 E-value=0.0037 Score=48.10 Aligned_cols=85 Identities=26% Similarity=0.280 Sum_probs=62.0
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEec----CCCCc-----------ChHhHHHHh
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAE----LFWNP-----------GILTQAEDR 66 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~----~~wn~-----------~~~~Q~~gR 66 (105)
+.++|++|.++..++.+.- +++.+-+++++..+...++.....+||=-. -.||| -.-.||..|
T Consensus 294 lply~aL~~e~Q~rvF~p~--p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QR 371 (674)
T KOG0922|consen 294 LPLYGALPSEEQSRVFDPA--PPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQR 371 (674)
T ss_pred eeecccCCHHHhhccccCC--CCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhh
Confidence 4689999999887774432 334555678889999999999888885211 12333 133588889
Q ss_pred hhccCCCCeEEEEEEeeCCCHH
Q psy12190 67 AHRIGQQDSVLIQYLVAKQTAD 88 (105)
Q Consensus 67 ~~R~Gq~~~v~v~~l~~~~s~d 88 (105)
.+|.|.+.+...|+|+++.-.|
T Consensus 372 aGRAGRt~pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 372 AGRAGRTGPGKCYRLYTESAYD 393 (674)
T ss_pred cccCCCCCCceEEEeeeHHHHh
Confidence 9999999999999999986553
No 130
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.45 E-value=0.0053 Score=48.45 Aligned_cols=78 Identities=18% Similarity=0.328 Sum_probs=59.7
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccC-------CC-C
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIG-------QQ-D 74 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~G-------q~-~ 74 (105)
.++|... +-++.++.|...+....+.++.+.+..|+|.+.+..++|+-+.-+...+.|.+||.-|+. |. .
T Consensus 460 ~IT~d~~--~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~ 537 (875)
T COG4096 460 KITGDAE--QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKE 537 (875)
T ss_pred EEeccch--hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccce
Confidence 4556555 445688888763333344677799999999999999999999999999999999999983 22 3
Q ss_pred eEEEEEEe
Q psy12190 75 SVLIQYLV 82 (105)
Q Consensus 75 ~v~v~~l~ 82 (105)
...|+.++
T Consensus 538 ~F~ifDf~ 545 (875)
T COG4096 538 FFTIFDFV 545 (875)
T ss_pred eEEEEEhh
Confidence 45666665
No 131
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.39 E-value=0.021 Score=36.07 Aligned_cols=45 Identities=9% Similarity=0.200 Sum_probs=31.0
Q ss_pred HHHHHHHHHhccCCC--eeEEEEec-ccceeccccc--ccCeeEEecCCC
Q psy12190 11 EERKSVVDQFQYEDK--FRVAVLSI-TAANSGITLT--AANLVVFAELFW 55 (105)
Q Consensus 11 ~~r~~~~~~F~~~~~--~~vll~s~-~~~~~Gl~l~--~~~~vi~~~~~w 55 (105)
.+..++++.|++..+ ..+|++.. ...++|+|++ .+..||+...|+
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 355789999986432 23544432 2379999999 467888888876
No 132
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.22 E-value=0.021 Score=45.99 Aligned_cols=64 Identities=22% Similarity=0.238 Sum_probs=47.4
Q ss_pred HHHHHHHHHhccCCCeeEEEEecccceeccccc--ccCeeEEecCCC-CcChH---------------------------
Q psy12190 11 EERKSVVDQFQYEDKFRVAVLSITAANSGITLT--AANLVVFAELFW-NPGIL--------------------------- 60 (105)
Q Consensus 11 ~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~--~~~~vi~~~~~w-n~~~~--------------------------- 60 (105)
..|.+++++|+..++ .||++ +.+..+|+|++ ....||+.-+|+ +|...
T Consensus 791 ~~r~~l~~~F~~~~~-~iLlG-~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~ 868 (928)
T PRK08074 791 GSRARLTKQFQQFDK-AILLG-TSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVL 868 (928)
T ss_pred CCHHHHHHHHHhcCC-eEEEe-cCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHH
Confidence 468899999986443 46555 48899999999 458889988887 34321
Q ss_pred --hHHHHhhhccCCCCeE
Q psy12190 61 --TQAEDRAHRIGQQDSV 76 (105)
Q Consensus 61 --~Q~~gR~~R~Gq~~~v 76 (105)
.|++||.-|..+.+-+
T Consensus 869 ~lkQg~GRlIRs~~D~G~ 886 (928)
T PRK08074 869 RFKQGFGRLIRTETDRGT 886 (928)
T ss_pred HHHhhhhhhcccCCceEE
Confidence 3888999998876644
No 133
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=96.14 E-value=0.027 Score=44.83 Aligned_cols=52 Identities=10% Similarity=0.001 Sum_probs=37.1
Q ss_pred CeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEEeeCCCHHHHHHHHHHhhhh
Q psy12190 46 NLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYLVAKQTADDYLWPLVMTKLD 100 (105)
Q Consensus 46 ~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l~~~~s~d~~i~~~~~~K~~ 100 (105)
++||+|||.-..-...|.. |++|.| +++.||.++++||.||.-+-...+|.+
T Consensus 478 ~~VImYEP~~sfIR~IEvy-ra~r~~--r~~rVyfL~y~~S~EEq~yl~sirrEK 529 (814)
T TIGR00596 478 RYVIMYEPDISFIRQLEVY-KASRPL--RPLRVYFLYYGGSIEEQRYLTSLRREK 529 (814)
T ss_pred CEEEEECCChHHHHHHHHH-HccCCC--CCcEEEEEEECCcHHHHHHHHHHHHHH
Confidence 8999999985443333311 555555 458999999999999987766666544
No 134
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=96.13 E-value=0.025 Score=45.12 Aligned_cols=64 Identities=17% Similarity=0.204 Sum_probs=45.7
Q ss_pred HHHHHHHHHhccCCCeeEEEEecccceecccccc--cCeeEEecCCCC-cCh----------------------------
Q psy12190 11 EERKSVVDQFQYEDKFRVAVLSITAANSGITLTA--ANLVVFAELFWN-PGI---------------------------- 59 (105)
Q Consensus 11 ~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~--~~~vi~~~~~wn-~~~---------------------------- 59 (105)
..|.+++++|+.++ ..+|++ +++..+|+|++. ...||+.-+|+- |..
T Consensus 712 ~~r~~ll~~F~~~~-~~iLlg-t~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~ 789 (850)
T TIGR01407 712 GSRAKIKKRFNNGE-KAILLG-TSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAII 789 (850)
T ss_pred ccHHHHHHHHHhCC-CeEEEE-cceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHH
Confidence 47899999998644 446554 599999999994 446677777763 221
Q ss_pred -HhHHHHhhhccCCCCeE
Q psy12190 60 -LTQAEDRAHRIGQQDSV 76 (105)
Q Consensus 60 -~~Q~~gR~~R~Gq~~~v 76 (105)
..|++||+-|..+.+-+
T Consensus 790 ~l~Qa~GRlIRs~~D~G~ 807 (850)
T TIGR01407 790 RLRQALGRLIRRENDRGS 807 (850)
T ss_pred HHHHhhccccccCCceEE
Confidence 13889999998876644
No 135
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=95.95 E-value=0.06 Score=33.94 Aligned_cols=47 Identities=11% Similarity=0.201 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHhccCCCeeEEEEecccceeccccc--ccCeeEEecCCC
Q psy12190 8 VGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLT--AANLVVFAELFW 55 (105)
Q Consensus 8 ~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~--~~~~vi~~~~~w 55 (105)
....+..++++.|.+.....|| +++....+|+|++ .+..||+...|+
T Consensus 31 ~~~~~~~~~l~~f~~~~~~~iL-~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 31 EDGKETGKLLEKYVEACENAIL-LATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred CChhHHHHHHHHHHHcCCCEEE-EEccceecceecCCCCeeEEEEEecCC
Confidence 4444678999999865533454 4445599999999 467888888776
No 136
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.41 E-value=0.049 Score=42.64 Aligned_cols=45 Identities=11% Similarity=0.257 Sum_probs=33.5
Q ss_pred HHHHHHHHHhccC---CCeeEEEEec-ccceeccccc--ccCeeEEecCCC
Q psy12190 11 EERKSVVDQFQYE---DKFRVAVLSI-TAANSGITLT--AANLVVFAELFW 55 (105)
Q Consensus 11 ~~r~~~~~~F~~~---~~~~vll~s~-~~~~~Gl~l~--~~~~vi~~~~~w 55 (105)
.++.+++++|... +...+|++.. ...++|+|+. .+..||++..|+
T Consensus 565 ~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 565 QETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred chHHHHHHHHHHHHhcCCceEEEEecCCcccCccccCCCCCcEEEEEccCC
Confidence 5788999999742 2334555443 4788999999 588999999887
No 137
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.39 E-value=0.11 Score=40.93 Aligned_cols=81 Identities=23% Similarity=0.303 Sum_probs=57.5
Q ss_pred EEEECCCCHH--HHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCC--CCcC----------hHhHHHHhh
Q psy12190 2 IRIDGSVGSE--ERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELF--WNPG----------ILTQAEDRA 67 (105)
Q Consensus 2 ~~~~g~~~~~--~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~--wn~~----------~~~Q~~gR~ 67 (105)
.++++.++.. .-+..++.|.+ +...+||.+ .+...|+|+++..-|.+++-+ -+.. .+.|..||+
T Consensus 510 ~r~d~Dtt~~k~~~~~~l~~~~~-ge~dILiGT-QmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRA 587 (730)
T COG1198 510 IRIDSDTTRRKGALEDLLDQFAN-GEADILIGT-QMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRA 587 (730)
T ss_pred EEEccccccchhhHHHHHHHHhC-CCCCeeecc-hhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhh
Confidence 4677776553 35678999995 446676655 999999999999998777644 2222 234999999
Q ss_pred hccCCCCeEEEEEEeeC
Q psy12190 68 HRIGQQDSVLIQYLVAK 84 (105)
Q Consensus 68 ~R~Gq~~~v~v~~l~~~ 84 (105)
+|.+-.-.|.|-.+..+
T Consensus 588 gR~~~~G~VvIQT~~P~ 604 (730)
T COG1198 588 GRAGKPGEVVIQTYNPD 604 (730)
T ss_pred ccCCCCCeEEEEeCCCC
Confidence 99987766666555544
No 138
>KOG0950|consensus
Probab=95.32 E-value=0.025 Score=45.38 Aligned_cols=66 Identities=23% Similarity=0.336 Sum_probs=47.1
Q ss_pred ECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCC-----CcChHhHHHHhhhccCCC
Q psy12190 5 DGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFW-----NPGILTQAEDRAHRIGQQ 73 (105)
Q Consensus 5 ~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~w-----n~~~~~Q~~gR~~R~Gq~ 73 (105)
|.+++.++|+-+=..|+ .+...| ++.+...+.|.||+.-..+ +=.|.. ....|.|.+||++|.|=.
T Consensus 529 haGLT~eER~~iE~afr-~g~i~v-l~aTSTlaaGVNLPArRVI-iraP~~g~~~l~~~~YkQM~GRAGR~gid 599 (1008)
T KOG0950|consen 529 HAGLTSEEREIIEAAFR-EGNIFV-LVATSTLAAGVNLPARRVI-IRAPYVGREFLTRLEYKQMVGRAGRTGID 599 (1008)
T ss_pred ccccccchHHHHHHHHH-hcCeEE-EEecchhhccCcCCcceeE-EeCCccccchhhhhhHHhhhhhhhhcccc
Confidence 45677888887777888 455666 4555779999999865544 444433 456778999999999843
No 139
>KOG0383|consensus
Probab=95.31 E-value=0.011 Score=46.01 Aligned_cols=39 Identities=33% Similarity=0.518 Sum_probs=33.6
Q ss_pred CEEEECCCCHHHHHHHHHHhccCC-CeeEEEEecccceec
Q psy12190 1 YIRIDGSVGSEERKSVVDQFQYED-KFRVAVLSITAANSG 39 (105)
Q Consensus 1 ~~~~~g~~~~~~r~~~~~~F~~~~-~~~vll~s~~~~~~G 39 (105)
|-+++|+.+..+|+.++++||.++ +-.++++|+++||.|
T Consensus 657 ~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 657 YERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred ceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 678999999999999999999644 455679999999987
No 140
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=95.23 E-value=0.041 Score=42.48 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=33.5
Q ss_pred HHHHHHHHhccCCCeeEEEEecccceeccccc--ccCeeEEecCCCC
Q psy12190 12 ERKSVVDQFQYEDKFRVAVLSITAANSGITLT--AANLVVFAELFWN 56 (105)
Q Consensus 12 ~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~--~~~~vi~~~~~wn 56 (105)
.+...++.|...++. .+++.+....+|+|++ .+..||+...|+-
T Consensus 515 ~~~~~l~~f~~~~~~-~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp 560 (654)
T COG1199 515 EREELLEKFKASGEG-LILVGGGSFWEGVDFPGDALRLVVIVGLPFP 560 (654)
T ss_pred cHHHHHHHHHHhcCC-eEEEeeccccCcccCCCCCeeEEEEEecCCC
Confidence 455899999876653 3445558999999999 5688899888874
No 141
>KOG0926|consensus
Probab=95.08 E-value=0.019 Score=45.75 Aligned_cols=75 Identities=21% Similarity=0.291 Sum_probs=49.8
Q ss_pred EECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEec-----------------CCC-CcChHhHHHH
Q psy12190 4 IDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAE-----------------LFW-NPGILTQAED 65 (105)
Q Consensus 4 ~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~-----------------~~w-n~~~~~Q~~g 65 (105)
++.=+|.++..++.+.- +.+.+.+++++.++...|+.+...+||=.. -.| +...-.||.|
T Consensus 610 LYSLLs~~~Q~RVF~~~--p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAG 687 (1172)
T KOG0926|consen 610 LYSLLSTEKQMRVFDEV--PKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAG 687 (1172)
T ss_pred hhhhcCHHHhhhhccCC--CCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhcc
Confidence 34445666655554332 445677899999999999999999987322 223 3344458888
Q ss_pred hhhccCCCCeEEEEEEee
Q psy12190 66 RAHRIGQQDSVLIQYLVA 83 (105)
Q Consensus 66 R~~R~Gq~~~v~v~~l~~ 83 (105)
|++|+|.. +.|||++
T Consensus 688 RAGRtgpG---HcYRLYS 702 (1172)
T KOG0926|consen 688 RAGRTGPG---HCYRLYS 702 (1172)
T ss_pred ccCCCCCC---ceeehhh
Confidence 88888855 4566663
No 142
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=95.06 E-value=0.037 Score=44.29 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=42.9
Q ss_pred EEEecccceecccccccC--------eeEEecCCCCcChHhHHHHhhhccCCCCeEEEEE
Q psy12190 29 AVLSITAANSGITLTAAN--------LVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQY 80 (105)
Q Consensus 29 ll~s~~~~~~Gl~l~~~~--------~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~ 80 (105)
+.+++.++|.|.|..-.. |||..+.+-+.....|..||++|.|..-....|-
T Consensus 477 VTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~l 536 (925)
T PRK12903 477 ITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFI 536 (925)
T ss_pred EEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEE
Confidence 355669999999987443 9999999999999999999999999887665553
No 143
>KOG0947|consensus
Probab=95.04 E-value=0.12 Score=41.96 Aligned_cols=76 Identities=25% Similarity=0.293 Sum_probs=49.7
Q ss_pred ECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCC---------CCcChHhHHHHhhhccCCCCe
Q psy12190 5 DGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELF---------WNPGILTQAEDRAHRIGQQDS 75 (105)
Q Consensus 5 ~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~---------wn~~~~~Q~~gR~~R~Gq~~~ 75 (105)
||+.=|--++-+=.-|+ -+-++||++ +...+.|+|++. ..|+|-... -+|..|.|..||++|-|=...
T Consensus 637 H~GlLPivKE~VE~LFq-rGlVKVLFA-TETFAMGVNMPA-RtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~t 713 (1248)
T KOG0947|consen 637 HGGLLPIVKEVVELLFQ-RGLVKVLFA-TETFAMGVNMPA-RTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDET 713 (1248)
T ss_pred cccchHHHHHHHHHHHh-cCceEEEee-hhhhhhhcCCCc-eeEEeeehhhccCcceeecCChhHHhhhccccccccCcC
Confidence 34443333333333566 355778555 499999999984 445554432 378999999999999997766
Q ss_pred EEEEEEee
Q psy12190 76 VLIQYLVA 83 (105)
Q Consensus 76 v~v~~l~~ 83 (105)
-+|.-+..
T Consensus 714 GTVii~~~ 721 (1248)
T KOG0947|consen 714 GTVIIMCK 721 (1248)
T ss_pred ceEEEEec
Confidence 66655543
No 144
>KOG0923|consensus
Probab=94.72 E-value=0.058 Score=42.21 Aligned_cols=75 Identities=23% Similarity=0.288 Sum_probs=48.2
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCC------Cc--------------ChHh
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFW------NP--------------GILT 61 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~w------n~--------------~~~~ 61 (105)
++++.++|.+...++.+- .+++.+-+++.+..+-..|+.....+|| ||.+ || ..-.
T Consensus 510 ~PiYaNLPselQakIFeP--tP~gaRKVVLATNIAETSlTIdgI~yVi--DpGf~K~nsynprtGmesL~v~piSKAsA~ 585 (902)
T KOG0923|consen 510 LPIYANLPSELQAKIFEP--TPPGARKVVLATNIAETSLTIDGIKYVI--DPGFVKQNSYNPRTGMESLLVTPISKASAN 585 (902)
T ss_pred eeccccCChHHHHhhcCC--CCCCceeEEEeecchhhceeecCeEEEe--cCccccccCcCCCcCceeEEEeeechhhhh
Confidence 577888888777666332 2344444466669999999988887775 4443 22 2334
Q ss_pred HHHHhhhccCCCCeEEEEEEee
Q psy12190 62 QAEDRAHRIGQQDSVLIQYLVA 83 (105)
Q Consensus 62 Q~~gR~~R~Gq~~~v~v~~l~~ 83 (105)
||.||++|.|..+. |+|++
T Consensus 586 QRaGRAGRtgPGKC---fRLYt 604 (902)
T KOG0923|consen 586 QRAGRAGRTGPGKC---FRLYT 604 (902)
T ss_pred hhccccCCCCCCce---EEeec
Confidence 88787777775554 55555
No 145
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=94.61 E-value=0.056 Score=43.22 Aligned_cols=85 Identities=21% Similarity=0.294 Sum_probs=54.2
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecC----CCCcChH-----------hHHHHh
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAEL----FWNPGIL-----------TQAEDR 66 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~----~wn~~~~-----------~Q~~gR 66 (105)
+.++|.++.++..++++--. +..+-+|+++..+-.+|+.+...+||=-.. -||+..- ..+.-|
T Consensus 291 ~PLy~~L~~~eQ~rvF~p~~--~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QR 368 (845)
T COG1643 291 LPLYGALSAEEQVRVFEPAP--GGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQR 368 (845)
T ss_pred eeccccCCHHHHHhhcCCCC--CCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhh
Confidence 57899999999988544332 222325788899999999999988863221 1222221 134445
Q ss_pred hhccCCCCeEEEEEEeeCCCHH
Q psy12190 67 AHRIGQQDSVLIQYLVAKQTAD 88 (105)
Q Consensus 67 ~~R~Gq~~~v~v~~l~~~~s~d 88 (105)
.+|-|.+.+-..|+|++++..+
T Consensus 369 aGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 369 AGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred ccccccCCCceEEEecCHHHHH
Confidence 5555555677888888875443
No 146
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=94.54 E-value=0.11 Score=40.86 Aligned_cols=44 Identities=11% Similarity=0.184 Sum_probs=32.5
Q ss_pred HHHHHHHHhccC---CCeeEEEEecccceeccccc--ccCeeEEecCCCC
Q psy12190 12 ERKSVVDQFQYE---DKFRVAVLSITAANSGITLT--AANLVVFAELFWN 56 (105)
Q Consensus 12 ~r~~~~~~F~~~---~~~~vll~s~~~~~~Gl~l~--~~~~vi~~~~~wn 56 (105)
.+.++++.|++. +...||+++ .+..+|+|++ .++.||+.-+|+-
T Consensus 569 ~~~~ll~~f~~~~~~~~~~VL~g~-~sf~EGVD~pGd~l~~vII~kLPF~ 617 (697)
T PRK11747 569 PRQRLLEKHKKRVDEGEGSVLFGL-QSFAEGLDLPGDYLTQVIITKIPFA 617 (697)
T ss_pred hHHHHHHHHHHHhccCCCeEEEEe-ccccccccCCCCceEEEEEEcCCCC
Confidence 577888777642 334466655 8889999998 5788999888873
No 147
>KOG0924|consensus
Probab=94.46 E-value=0.06 Score=42.38 Aligned_cols=89 Identities=16% Similarity=0.262 Sum_probs=60.2
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecC----CCCcC-----------hHhHHHHh
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAEL----FWNPG-----------ILTQAEDR 66 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~----~wn~~-----------~~~Q~~gR 66 (105)
.+++..+|.+...++... .++++.-+|+++..+...|+.+...+||=... .+||. .-.+|..|
T Consensus 601 lpiYSQLp~dlQ~kiFq~--a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QR 678 (1042)
T KOG0924|consen 601 LPIYSQLPADLQAKIFQK--AEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQR 678 (1042)
T ss_pred EeehhhCchhhhhhhccc--CCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhh
Confidence 356667776666555332 24556666788899999999998888864321 23332 22366777
Q ss_pred hhccCCCCeEEEEEEeeCCCHHHHHH
Q psy12190 67 AHRIGQQDSVLIQYLVAKQTADDYLW 92 (105)
Q Consensus 67 ~~R~Gq~~~v~v~~l~~~~s~d~~i~ 92 (105)
++|.|.+.+-..|+++++.+....++
T Consensus 679 aGRAGRt~pG~cYRlYTe~ay~~eml 704 (1042)
T KOG0924|consen 679 AGRAGRTGPGTCYRLYTEDAYKNEML 704 (1042)
T ss_pred ccccCCCCCcceeeehhhhHHHhhcc
Confidence 77778888899999999977665554
No 148
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=93.69 E-value=0.11 Score=41.01 Aligned_cols=52 Identities=19% Similarity=0.157 Sum_probs=42.6
Q ss_pred EEEecccceeccccc---------------ccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEE
Q psy12190 29 AVLSITAANSGITLT---------------AANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQY 80 (105)
Q Consensus 29 ll~s~~~~~~Gl~l~---------------~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~ 80 (105)
+.+++.++|.|.|+. ..=|||-.+.+-+.....|..||++|.|..-...+|-
T Consensus 478 VTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~l 544 (764)
T PRK12326 478 VTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFV 544 (764)
T ss_pred EEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEE
Confidence 356669999998876 3458899999999999999999999999887666553
No 149
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=93.57 E-value=0.13 Score=41.74 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=42.2
Q ss_pred EEEecccceeccccc--------ccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEE
Q psy12190 29 AVLSITAANSGITLT--------AANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQY 80 (105)
Q Consensus 29 ll~s~~~~~~Gl~l~--------~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~ 80 (105)
+.+++.++|.|.|.. ..=|||..+.+-+.....|..||++|.|..-....|-
T Consensus 619 VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~l 678 (970)
T PRK12899 619 VTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFL 678 (970)
T ss_pred EEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEE
Confidence 355669999998865 2348899999999999999999999999887655543
No 150
>KOG0951|consensus
Probab=93.49 E-value=0.13 Score=42.89 Aligned_cols=70 Identities=21% Similarity=0.328 Sum_probs=51.5
Q ss_pred CEEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEE----ecCC---C---CcChHhHHHHhhhcc
Q psy12190 1 YIRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVF----AELF---W---NPGILTQAEDRAHRI 70 (105)
Q Consensus 1 ~~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~----~~~~---w---n~~~~~Q~~gR~~R~ 70 (105)
|..-|.++...+|...=+-|. ++..+| +.++...+-|+||+.-..+|- ++|. | +|-...|..||++|.
T Consensus 610 faIHhAGl~R~dR~~~EdLf~-~g~iqv-lvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp 687 (1674)
T KOG0951|consen 610 FAIHHAGLNRKDRELVEDLFA-DGHIQV-LVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRP 687 (1674)
T ss_pred ceeeccCCCcchHHHHHHHHh-cCceeE-EEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCC
Confidence 344577899999999988998 566888 556699999999986555543 3333 3 344566999999998
Q ss_pred CC
Q psy12190 71 GQ 72 (105)
Q Consensus 71 Gq 72 (105)
+-
T Consensus 688 ~~ 689 (1674)
T KOG0951|consen 688 QY 689 (1674)
T ss_pred cc
Confidence 64
No 151
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=92.93 E-value=0.36 Score=38.69 Aligned_cols=42 Identities=10% Similarity=0.168 Sum_probs=30.0
Q ss_pred HHHHHHHhccCCCeeEEEEecccceeccccc--ccCeeEEecCCCC
Q psy12190 13 RKSVVDQFQYEDKFRVAVLSITAANSGITLT--AANLVVFAELFWN 56 (105)
Q Consensus 13 r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~--~~~~vi~~~~~wn 56 (105)
+.+++++|+.++ ..||+++ .+..+|+|++ .+..+|+.-+|+.
T Consensus 683 ~~~l~~~F~~~~-~~vLlG~-~sFwEGVD~p~~~~~~viI~kLPF~ 726 (820)
T PRK07246 683 AYNIKKRFDRGE-QQILLGL-GSFWEGVDFVQADRMIEVITRLPFD 726 (820)
T ss_pred HHHHHHHHHcCC-CeEEEec-chhhCCCCCCCCCeEEEEEecCCCC
Confidence 567899998644 3466555 8999999996 3455677776653
No 152
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=92.02 E-value=0.25 Score=40.50 Aligned_cols=52 Identities=17% Similarity=0.154 Sum_probs=42.8
Q ss_pred EEEecccceeccccc--------ccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEE
Q psy12190 29 AVLSITAANSGITLT--------AANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQY 80 (105)
Q Consensus 29 ll~s~~~~~~Gl~l~--------~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~ 80 (105)
+.+++.++|.|.|.. ..=|||-.+.+-+.....|..||++|.|..-....|-
T Consensus 679 VTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~l 738 (1112)
T PRK12901 679 VTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYV 738 (1112)
T ss_pred EEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEE
Confidence 355569999998876 4578999999999999999999999999886655543
No 153
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=90.65 E-value=0.42 Score=38.69 Aligned_cols=37 Identities=24% Similarity=0.106 Sum_probs=31.0
Q ss_pred cCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 45 ANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 45 ~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
.=|||-.+.+-|.....|..||++|.|..-....|--
T Consensus 553 GLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lS 589 (913)
T PRK13103 553 GLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLS 589 (913)
T ss_pred CCEEEeeccCchHHHHHHhccccccCCCCCceEEEEE
Confidence 4488999999999999999999999998876665543
No 154
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=90.35 E-value=2.7 Score=31.53 Aligned_cols=83 Identities=11% Similarity=0.105 Sum_probs=58.8
Q ss_pred CEEEECCCCHHHHHHHHHHhccCCCeeEEEEecccce-ecccccccCeeEEecCCCCcChHhHHHHhhhccCC----CCe
Q psy12190 1 YIRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAAN-SGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQ----QDS 75 (105)
Q Consensus 1 ~~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~-~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq----~~~ 75 (105)
|+.++.-++..+-.++-..|..+ ..++||.|-+..= .-..+..+.+||||.||-+|.-|...+.-+..-.+ ..+
T Consensus 327 F~~i~EYts~~~isRAR~~F~~G-~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~ 405 (442)
T PF06862_consen 327 FVQISEYTSNSDISRARSQFFHG-RKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAAD 405 (442)
T ss_pred EEEecccCCHHHHHHHHHHHHcC-CceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccC
Confidence 46677788889999999999954 5678887744321 33456789999999999999988877755544433 234
Q ss_pred EEEEEEeeC
Q psy12190 76 VLIQYLVAK 84 (105)
Q Consensus 76 v~v~~l~~~ 84 (105)
..+.-++++
T Consensus 406 ~~~~~lysk 414 (442)
T PF06862_consen 406 ATVTVLYSK 414 (442)
T ss_pred ceEEEEecH
Confidence 556666655
No 155
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=89.82 E-value=1.1 Score=36.94 Aligned_cols=75 Identities=25% Similarity=0.276 Sum_probs=54.0
Q ss_pred ECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCC---------CCcChHhHHHHhhhccCCCCe
Q psy12190 5 DGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELF---------WNPGILTQAEDRAHRIGQQDS 75 (105)
Q Consensus 5 ~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~---------wn~~~~~Q~~gR~~R~Gq~~~ 75 (105)
|+++=|..|...-.-|+. +-.+|++ .|...+.|+|++. .+|++.... -+++.+.|.-||++|-|....
T Consensus 451 H~GlLP~~K~~vE~Lfq~-GLvkvvF-aTeT~s~GiNmPa-rtvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~ 527 (1041)
T COG4581 451 HAGLLPAIKELVEELFQE-GLVKVVF-ATETFAIGINMPA-RTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVL 527 (1041)
T ss_pred ccccchHHHHHHHHHHhc-cceeEEe-ehhhhhhhcCCcc-cceeeeeeEEecCCceeecChhHHHHhhhhhcccccccc
Confidence 566667777777778884 4467754 5599999999874 445554432 267889999999999999876
Q ss_pred EEEEEEe
Q psy12190 76 VLIQYLV 82 (105)
Q Consensus 76 v~v~~l~ 82 (105)
.+|.-.-
T Consensus 528 G~vI~~~ 534 (1041)
T COG4581 528 GTVIVIE 534 (1041)
T ss_pred ceEEEec
Confidence 6555443
No 156
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=89.27 E-value=1.9 Score=33.87 Aligned_cols=46 Identities=17% Similarity=0.088 Sum_probs=34.2
Q ss_pred HHHHHHHHhccC---CCeeEEEEecccceecccc----------cccCeeEEecCCCCcC
Q psy12190 12 ERKSVVDQFQYE---DKFRVAVLSITAANSGITL----------TAANLVVFAELFWNPG 58 (105)
Q Consensus 12 ~r~~~~~~F~~~---~~~~vll~s~~~~~~Gl~l----------~~~~~vi~~~~~wn~~ 58 (105)
.+..++++|+.. +...||+ .+.+..+|+|+ ...+.||+.-+|+-+.
T Consensus 506 ~~~~l~~~f~~~~~~~~~~vL~-gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~ 564 (636)
T TIGR03117 506 RLASAEQQFLALYANGIQPVLI-AAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLN 564 (636)
T ss_pred cHHHHHHHHHHhhcCCCCcEEE-eCCccccccccCCccCCCCCCCcccEEEEEeCCCCcC
Confidence 567799999864 2234544 45899999999 2688899988887653
No 157
>KOG0920|consensus
Probab=88.68 E-value=0.55 Score=38.12 Aligned_cols=82 Identities=20% Similarity=0.219 Sum_probs=52.1
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeE--------EecCCCC----------cChHhHH
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVV--------FAELFWN----------PGILTQA 63 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi--------~~~~~wn----------~~~~~Q~ 63 (105)
..+|++++.++.+.+.... +++..-+|+++..+..+++...+-+|| .|||.-+ ...-.||
T Consensus 448 lplHs~~~s~eQ~~VF~~p--p~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR 525 (924)
T KOG0920|consen 448 LPLHSSIPSEEQQAVFKRP--PKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQR 525 (924)
T ss_pred EeccccCChHHHHHhcCCC--CCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHh
Confidence 3578899998888775544 233344577889999999988877775 3333322 2223355
Q ss_pred HHhhhccCCCCeEEEEEEeeCCCHH
Q psy12190 64 EDRAHRIGQQDSVLIQYLVAKQTAD 88 (105)
Q Consensus 64 ~gR~~R~Gq~~~v~v~~l~~~~s~d 88 (105)
.||+ |.-.+-..|+++++.-.+
T Consensus 526 ~GRA---GRv~~G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 526 RGRA---GRVRPGICYHLYTRSRYE 547 (924)
T ss_pred cccc---cCccCCeeEEeechhhhh
Confidence 5555 455666788888765433
No 158
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=87.52 E-value=3.6 Score=33.92 Aligned_cols=68 Identities=13% Similarity=0.026 Sum_probs=51.8
Q ss_pred EEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhcc-----CCC---CeEEEEEEeeCCCHHHHHHHHHH
Q psy12190 28 VAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRI-----GQQ---DSVLIQYLVAKQTADDYLWPLVM 96 (105)
Q Consensus 28 vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~-----Gq~---~~v~v~~l~~~~s~d~~i~~~~~ 96 (105)
-+|.|-.++.+|-+.+++-.+.-+...-+.....|-+||.-|+ |.. +.+ .-.+++..|.++..-.++.
T Consensus 503 ~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~-~LTvianesy~dFa~~LQ~ 578 (986)
T PRK15483 503 RFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEF-RLNYLIDYDEKDFASKLVG 578 (986)
T ss_pred EEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccE-EEEEEeCccHHHHHHHHHH
Confidence 3477778999999999999998888888888889999999998 322 355 4555566666666555554
No 159
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=86.88 E-value=4.5 Score=28.75 Aligned_cols=70 Identities=7% Similarity=0.051 Sum_probs=37.8
Q ss_pred CeeEEEEeccccee----cccccccCeeEEecCCCCcChHh-HHHHhhhccCCCCeEEEEEEeeCCCHHHHHHHHHH
Q psy12190 25 KFRVAVLSITAANS----GITLTAANLVVFAELFWNPGILT-QAEDRAHRIGQQDSVLIQYLVAKQTADDYLWPLVM 96 (105)
Q Consensus 25 ~~~vll~s~~~~~~----Gl~l~~~~~vi~~~~~wn~~~~~-Q~~gR~~R~Gq~~~v~v~~l~~~~s~d~~i~~~~~ 96 (105)
.+.+.+++++-... .++-...+.||-+|+.+++.... |.+...+|.+ +.+-|++++..+|+|..++..-.
T Consensus 182 ~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~--~~~PiirLv~~nSiEHi~L~~~~ 256 (297)
T PF11496_consen 182 SVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN--RLCPIIRLVPSNSIEHIELCFPK 256 (297)
T ss_dssp SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH---------S--EEEEEETTSHHHHHHHHTT
T ss_pred ceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC--CCCcEEEEeeCCCHHHHHHHccC
Confidence 45566666553322 23334778999999999987655 4443334433 89999999999999988776544
No 160
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=86.47 E-value=2.3 Score=35.30 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=33.0
Q ss_pred eeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCC
Q psy12190 26 FRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQD 74 (105)
Q Consensus 26 ~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~ 74 (105)
..++++++.+...|+|+. .+. ++.|+. ......|+.||+.|.|+..
T Consensus 838 ~~~i~v~Tqv~E~g~D~d-fd~-~~~~~~-~~~sliQ~aGR~~R~~~~~ 883 (1110)
T TIGR02562 838 HLFIVLATPVEEVGRDHD-YDW-AIADPS-SMRSIIQLAGRVNRHRLEK 883 (1110)
T ss_pred CCeEEEEeeeEEEEeccc-CCe-eeeccC-cHHHHHHHhhcccccccCC
Confidence 345678889999999965 333 334443 3466789999999999863
No 161
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=86.26 E-value=5.8 Score=32.67 Aligned_cols=70 Identities=19% Similarity=0.228 Sum_probs=50.4
Q ss_pred HHHHHHHHh-ccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCC--CeEEEEEEee
Q psy12190 12 ERKSVVDQF-QYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQ--DSVLIQYLVA 83 (105)
Q Consensus 12 ~r~~~~~~F-~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~--~~v~v~~l~~ 83 (105)
.+.....+| ..++.+++||+. ++.=.|.|-|..+++ ++|-+--.-...||+.|+-|.=.. ..-.|..++.
T Consensus 579 ~~~~~~~r~~~~~d~~kilIV~-dmlLTGFDaP~L~Tm-YvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 579 EKKDLIKRFKLKDDPLDLLIVV-DMLLTGFDAPCLNTL-YVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred HHhhhhhhhcCcCCCCCEEEEE-ccccccCCccccceE-EeccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 344455555 455667888877 888899999888776 556667778888999999999543 4556666553
No 162
>KOG0948|consensus
Probab=86.22 E-value=0.64 Score=37.24 Aligned_cols=71 Identities=21% Similarity=0.288 Sum_probs=46.0
Q ss_pred HhccCCCeeEEEEecccceecccccccCeeEEecCCC--------CcChHhHHHHhhhccCCCCeEEEEEEeeCCCHHHH
Q psy12190 19 QFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFW--------NPGILTQAEDRAHRIGQQDSVLIQYLVAKQTADDY 90 (105)
Q Consensus 19 ~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~w--------n~~~~~Q~~gR~~R~Gq~~~v~v~~l~~~~s~d~~ 90 (105)
-|+ .+-+++|+++ ...+-|||++.-..|+..---| +.+.|.|.-||++|-|-...-.+.-.+ +..++..
T Consensus 467 LFq-EGLvKvLFAT-ETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmi-Dekm~~~ 543 (1041)
T KOG0948|consen 467 LFQ-EGLVKVLFAT-ETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMI-DEKMEPQ 543 (1041)
T ss_pred HHh-ccHHHHHHhh-hhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEe-cCcCCHH
Confidence 566 4557776555 9999999998655444333223 567889999999999976544444443 3334444
Q ss_pred HH
Q psy12190 91 LW 92 (105)
Q Consensus 91 i~ 92 (105)
..
T Consensus 544 ~a 545 (1041)
T KOG0948|consen 544 VA 545 (1041)
T ss_pred HH
Confidence 43
No 163
>KOG0925|consensus
Probab=77.57 E-value=2.8 Score=32.28 Aligned_cols=58 Identities=22% Similarity=0.296 Sum_probs=42.5
Q ss_pred EEEecccceecccccccCeeEEecCCC------CcC-----------hHhHHHHhhhccCCCCeEEEEEEeeCCCHH
Q psy12190 29 AVLSITAANSGITLTAANLVVFAELFW------NPG-----------ILTQAEDRAHRIGQQDSVLIQYLVAKQTAD 88 (105)
Q Consensus 29 ll~s~~~~~~Gl~l~~~~~vi~~~~~w------n~~-----------~~~Q~~gR~~R~Gq~~~v~v~~l~~~~s~d 88 (105)
+++|+..+...+.+...-+|| ||.+ ||. .-.||..|.+|.|.+++-..++|+++..++
T Consensus 316 vVvstniaetsltidgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~ 390 (699)
T KOG0925|consen 316 VVVSTNIAETSLTIDGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFE 390 (699)
T ss_pred EEEEecchheeeeeccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhh
Confidence 477778888888877665554 5443 432 234888999999999999999999875544
No 164
>PF12367 PFO_beta_C: Pyruvate ferredoxin oxidoreductase beta subunit C terminal
Probab=74.20 E-value=12 Score=20.54 Aligned_cols=48 Identities=21% Similarity=0.147 Sum_probs=36.5
Q ss_pred CeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEEeeCCCHHHHHHHH
Q psy12190 46 NLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYLVAKQTADDYLWPL 94 (105)
Q Consensus 46 ~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l~~~~s~d~~i~~~ 94 (105)
.++..++-.++|+...||+..+.. |..=++=|++-..+-|+|+++-..
T Consensus 15 ~rvy~l~e~~Dp~d~~~A~~~a~e-~d~iplGIfY~~~~ptfee~~~~~ 62 (67)
T PF12367_consen 15 ERVYKLDEDHDPSDREAAMEKARE-GDKIPLGIFYRNERPTFEERLPEL 62 (67)
T ss_pred HheEECCCCCCchhHHHHHHHHHh-cCCceEEEEEeCCCCCHHHHhhhh
Confidence 345566778999999999987777 666677676666688999987655
No 165
>PF08469 NPHI_C: Nucleoside triphosphatase I C-terminal; InterPro: IPR013676 This viral domain is found to the C terminus of Poxvirus nucleoside triphosphatase phosphohydrolase I (NPH I) [] together with the helicase conserved C-terminal domain (IPR001650 from INTERPRO). ; GO: 0005524 ATP binding, 0017111 nucleoside-triphosphatase activity, 0006351 transcription, DNA-dependent
Probab=74.06 E-value=3.4 Score=26.29 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=25.0
Q ss_pred CCeEEEEEEee-----CCCHHHHHHHHHHhhhhcCC
Q psy12190 73 QDSVLIQYLVA-----KQTADDYLWPLVMTKLDVPS 103 (105)
Q Consensus 73 ~~~v~v~~l~~-----~~s~d~~i~~~~~~K~~~~~ 103 (105)
.+-|.||.+++ +-|+||.++++.+.|..-++
T Consensus 8 rRYVNVhFIiAr~~ng~~sVDedlldiIk~Kskef~ 43 (148)
T PF08469_consen 8 RRYVNVHFIIARLSNGRPSVDEDLLDIIKDKSKEFN 43 (148)
T ss_pred ceEEEEEEEEEEcCCCCcchHHHHHHHHHHHHHHHH
Confidence 36789999997 24799999999999976543
No 166
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=64.73 E-value=15 Score=29.10 Aligned_cols=50 Identities=14% Similarity=0.312 Sum_probs=36.2
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEec
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAE 52 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~ 52 (105)
..++|+++..+|...++...+ +.+.+++++.......+.+.....+|+=|
T Consensus 342 ~ll~G~~~~~~r~~~~~~l~~-g~~~IvVgT~~ll~~~v~~~~l~lvVIDE 391 (681)
T PRK10917 342 ALLTGSLKGKERREILEAIAS-GEADIVIGTHALIQDDVEFHNLGLVIIDE 391 (681)
T ss_pred EEEcCCCCHHHHHHHHHHHhC-CCCCEEEchHHHhcccchhcccceEEEec
Confidence 357899999999999998874 44678888776666666666666555433
No 167
>KOG3432|consensus
Probab=63.20 E-value=23 Score=21.60 Aligned_cols=36 Identities=14% Similarity=0.323 Sum_probs=28.7
Q ss_pred CEEEECCCCHHHHHHHHHHhccCCCeeEEEEecccce
Q psy12190 1 YIRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAAN 37 (105)
Q Consensus 1 ~~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~ 37 (105)
|..++..++.++-+.....|-.-+...++|++ +-.+
T Consensus 38 f~vv~~~Tt~~eiedaF~~f~~RdDIaIiLIn-q~~A 73 (121)
T KOG3432|consen 38 FLVVDSKTTVEEIEDAFKSFTARDDIAIILIN-QFIA 73 (121)
T ss_pred EEEEeccCCHHHHHHHHHhhccccCeEEEEEh-HHHH
Confidence 56788899999999999999877777777776 4333
No 168
>PF12622 NpwBP: mRNA biogenesis factor
Probab=62.25 E-value=4.5 Score=20.81 Aligned_cols=12 Identities=17% Similarity=0.160 Sum_probs=10.0
Q ss_pred eeEEecCCCCcC
Q psy12190 47 LVVFAELFWNPG 58 (105)
Q Consensus 47 ~vi~~~~~wn~~ 58 (105)
.-|+|++.||+.
T Consensus 3 kSiyydP~~NP~ 14 (48)
T PF12622_consen 3 KSIYYDPELNPL 14 (48)
T ss_pred cceecCCccCCC
Confidence 358999999985
No 169
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=58.86 E-value=30 Score=21.12 Aligned_cols=36 Identities=14% Similarity=0.324 Sum_probs=27.3
Q ss_pred CEEEECCCCHHHHHHHHHHhccCCCeeEEEEecccc
Q psy12190 1 YIRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAA 36 (105)
Q Consensus 1 ~~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~ 36 (105)
|...++.++.++-.+.+++|-..+++-+++++-..+
T Consensus 36 f~~v~~~t~~eei~~~~~~~l~~~digIIlIte~~a 71 (115)
T TIGR01101 36 FLVVDKNTTVSEIEDCFNRFLKRDDIAIILINQHIA 71 (115)
T ss_pred eeeecCCCCHHHHHHHHHHHhhcCCeEEEEEcHHHH
Confidence 445677788889889999977777788888874443
No 170
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=58.01 E-value=24 Score=27.62 Aligned_cols=50 Identities=16% Similarity=0.296 Sum_probs=34.7
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEec
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAE 52 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~ 52 (105)
..++|+++..+|...++...+ +.+.+++.+.......+.+.+...+|+=|
T Consensus 316 ~lltg~~~~~~r~~~~~~i~~-g~~~IiVgT~~ll~~~~~~~~l~lvVIDE 365 (630)
T TIGR00643 316 ALLTGSLKGKRRKELLETIAS-GQIHLVVGTHALIQEKVEFKRLALVIIDE 365 (630)
T ss_pred EEEecCCCHHHHHHHHHHHhC-CCCCEEEecHHHHhccccccccceEEEec
Confidence 357899999999888888773 44677787766665556666665555433
No 171
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=57.36 E-value=15 Score=30.79 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=32.7
Q ss_pred HHHHHHHhccCCCeeEEEEecc---cceeccccc-ccCeeEEecCC
Q psy12190 13 RKSVVDQFQYEDKFRVAVLSIT---AANSGITLT-AANLVVFAELF 54 (105)
Q Consensus 13 r~~~~~~F~~~~~~~vll~s~~---~~~~Gl~l~-~~~~vi~~~~~ 54 (105)
..+.++.|.. +.+.+|+.... +.-.||||+ .+.++||+..|
T Consensus 372 ~~~~le~F~~-GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 372 KEEALEDFEE-GEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred chhhhhhhcc-CceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 3678899985 45778766543 566999999 99999999988
No 172
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=57.06 E-value=27 Score=19.89 Aligned_cols=41 Identities=10% Similarity=0.242 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHhccCCC-eeEEEEecccceecccccccCee
Q psy12190 7 SVGSEERKSVVDQFQYEDK-FRVAVLSITAANSGITLTAANLV 48 (105)
Q Consensus 7 ~~~~~~r~~~~~~F~~~~~-~~vll~s~~~~~~Gl~l~~~~~v 48 (105)
-++.++.++++++|+-... ..- |..++.....+++...+.|
T Consensus 17 iLs~eE~~~lL~~y~i~~~qLP~-I~~~DPv~r~~g~k~GdVv 58 (79)
T PRK09570 17 ILSEEEAKKLLKEYGIKPEQLPK-IKASDPVVKAIGAKPGDVI 58 (79)
T ss_pred ECCHHHHHHHHHHcCCCHHHCCc-eeccChhhhhcCCCCCCEE
Confidence 4688999999999985432 222 3445777777777766666
No 173
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=56.06 E-value=2.2 Score=33.69 Aligned_cols=39 Identities=15% Similarity=0.092 Sum_probs=34.5
Q ss_pred cccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCC
Q psy12190 33 ITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQ 73 (105)
Q Consensus 33 ~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~ 73 (105)
......+.++...+..+.++++|+| .+|++++.|++++.
T Consensus 486 n~~s~~~~~l~~~~~~~~~~LtgTP--len~l~eL~sl~~~ 524 (866)
T COG0553 486 NDQSSEGKALQFLKALNRLDLTGTP--LENRLGELWSLLQE 524 (866)
T ss_pred hhhhHHHHHHHHHhhcceeeCCCCh--HhhhHHHHHHHHHH
Confidence 3567788899999999999999999 68999999999985
No 174
>KOG1133|consensus
Probab=50.33 E-value=63 Score=26.20 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=18.0
Q ss_pred cceeccccc--ccCeeEEecCCCC
Q psy12190 35 AANSGITLT--AANLVVFAELFWN 56 (105)
Q Consensus 35 ~~~~Gl~l~--~~~~vi~~~~~wn 56 (105)
-.++|+|+. -+..|+.+.+|+-
T Consensus 698 KlSEGINF~D~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 698 KLSEGINFSDDLGRAVVVVGLPYP 721 (821)
T ss_pred ccccccccccccccEEEEeecCCC
Confidence 456999999 6888888998874
No 175
>PRK13556 azoreductase; Provisional
Probab=49.47 E-value=16 Score=24.14 Aligned_cols=30 Identities=37% Similarity=0.435 Sum_probs=23.8
Q ss_pred ccccCeeEEecCCCCcChHh---HHHHhhhccC
Q psy12190 42 LTAANLVVFAELFWNPGILT---QAEDRAHRIG 71 (105)
Q Consensus 42 l~~~~~vi~~~~~wn~~~~~---Q~~gR~~R~G 71 (105)
+..|+.+|+.-|-||.+... ..+.|+.|.|
T Consensus 87 l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g 119 (208)
T PRK13556 87 FLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAG 119 (208)
T ss_pred HHHCCEEEEeccccccCCcHHHHHHHHHHhcCC
Confidence 44789999999999876655 5688888875
No 176
>COG3869 Arginine kinase [Amino acid transport and metabolism]
Probab=49.30 E-value=80 Score=23.00 Aligned_cols=62 Identities=5% Similarity=-0.094 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHhc-------cCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhh
Q psy12190 7 SVGSEERKSVVDQFQ-------YEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAH 68 (105)
Q Consensus 7 ~~~~~~r~~~~~~F~-------~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~ 68 (105)
.+++-.+...++.+- +.+...+++-.....+.++|..+-=.+-.++|.|++....+...+++
T Consensus 78 d~~~~qk~~lvEkhLisp~L~~~~~~~A~lln~~e~~svmiNeeDHLriq~i~~g~~le~al~~a~~iD 146 (352)
T COG3869 78 DMPPWQKEVLVEKHLISPHLIENSEGGAVLLNEDETLSVMINEEDHLRIQCIDPGLQLEEALEQASQID 146 (352)
T ss_pred hCChHHHHHHHHHhcCCHHHhcCCCCceEEEcCCCceeeeecccceEEEEeecCCCCHHHHHHHHHhHH
Confidence 356667777777773 22333454544447888999888888888999999987776655553
No 177
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=42.49 E-value=14 Score=23.92 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=10.3
Q ss_pred CeeEEecCCCCcChHhH
Q psy12190 46 NLVVFAELFWNPGILTQ 62 (105)
Q Consensus 46 ~~vi~~~~~wn~~~~~Q 62 (105)
-.+||++|||.-..|..
T Consensus 70 ~D~vFlSPPWGGp~Y~~ 86 (163)
T PF09445_consen 70 FDVVFLSPPWGGPSYSK 86 (163)
T ss_dssp -SEEEE---BSSGGGGG
T ss_pred ccEEEECCCCCCccccc
Confidence 46899999998777754
No 178
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=42.01 E-value=60 Score=21.55 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=21.8
Q ss_pred CeeEEecCCCCcChHhHHHHhhhccCC
Q psy12190 46 NLVVFAELFWNPGILTQAEDRAHRIGQ 72 (105)
Q Consensus 46 ~~vi~~~~~wn~~~~~Q~~gR~~R~Gq 72 (105)
-.+|++|||+......+.+..+...|-
T Consensus 122 fDlV~~DPPy~~g~~~~~l~~l~~~~~ 148 (199)
T PRK10909 122 HNVVFVDPPFRKGLLEETINLLEDNGW 148 (199)
T ss_pred ceEEEECCCCCCChHHHHHHHHHHCCC
Confidence 588999999988888888887776544
No 179
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=41.01 E-value=26 Score=28.77 Aligned_cols=33 Identities=27% Similarity=0.141 Sum_probs=27.7
Q ss_pred eeEEecCCCCcChHhHHHHhhhccCCCCeEEEE
Q psy12190 47 LVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQ 79 (105)
Q Consensus 47 ~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~ 79 (105)
|||-.+..-+.....|-.||++|.|..-.-..|
T Consensus 595 ~VIgTErheSrRIDnQLrGRaGRQGDPG~s~f~ 627 (870)
T CHL00122 595 YVIGTERHESRRIDNQLRGRAGRQGDPGSSRFF 627 (870)
T ss_pred EEEecCcCchHHHHHHHhccccCCCCCCcceEE
Confidence 788888888888899999999999987655444
No 180
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=40.07 E-value=1.1e+02 Score=25.50 Aligned_cols=44 Identities=14% Similarity=-0.098 Sum_probs=39.8
Q ss_pred eEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhcc
Q psy12190 27 RVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRI 70 (105)
Q Consensus 27 ~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~ 70 (105)
.-+|.|-.++-+|-|-|++=.+.-+-++-+...-.|-+||.-|+
T Consensus 484 lRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRL 527 (985)
T COG3587 484 LRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRL 527 (985)
T ss_pred ceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceee
Confidence 34578878999999999999999999999999999999999999
No 181
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=40.07 E-value=19 Score=23.28 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=10.5
Q ss_pred eeEEecCCCCcCh
Q psy12190 47 LVVFAELFWNPGI 59 (105)
Q Consensus 47 ~vi~~~~~wn~~~ 59 (105)
.+|++||||....
T Consensus 2 dvI~~DPPW~~~~ 14 (176)
T PF05063_consen 2 DVIYADPPWPNKS 14 (176)
T ss_pred CEEEEeCCCCCcC
Confidence 4899999997654
No 182
>KOG0701|consensus
Probab=38.97 E-value=6.4 Score=34.15 Aligned_cols=57 Identities=18% Similarity=0.310 Sum_probs=45.4
Q ss_pred HHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccC
Q psy12190 13 RKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIG 71 (105)
Q Consensus 13 r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~G 71 (105)
+...+..|..+. .++|+. +.+.-+|++...|+-++.++.+-....+.|..||.-+.+
T Consensus 343 ~~~vl~~~~~~~-ln~L~~-~~~~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 343 QAEVLRRFHFHE-LNLLIA-TSVLEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hHHHHHHHhhhh-hhHHHH-HHHHHhhcchhhhhhheeccCcchHHHHHHhhcccccch
Confidence 455777777444 566554 478889999999999999999999999999998876664
No 183
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=38.72 E-value=41 Score=28.45 Aligned_cols=33 Identities=6% Similarity=0.272 Sum_probs=26.7
Q ss_pred EECCCCHHHHHHHHHHhccCCCeeEEEEecccce
Q psy12190 4 IDGSVGSEERKSVVDQFQYEDKFRVAVLSITAAN 37 (105)
Q Consensus 4 ~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~ 37 (105)
+||.++..+++.++++|.+ ++..+++.++.-..
T Consensus 161 yh~~l~~~ekee~le~i~~-gdfdIlitTs~FL~ 193 (1187)
T COG1110 161 YHSALPTKEKEEALERIES-GDFDILITTSQFLS 193 (1187)
T ss_pred eccccchHHHHHHHHHHhc-CCccEEEEeHHHHH
Confidence 7899999999999999995 45778887766444
No 184
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=37.97 E-value=45 Score=21.81 Aligned_cols=55 Identities=18% Similarity=0.208 Sum_probs=29.2
Q ss_pred HHHHHHhccCCCeeEEEEecccceecccc---cccCeeEEecCCCCcChH-hHHHHhhhcc
Q psy12190 14 KSVVDQFQYEDKFRVAVLSITAANSGITL---TAANLVVFAELFWNPGIL-TQAEDRAHRI 70 (105)
Q Consensus 14 ~~~~~~F~~~~~~~vll~s~~~~~~Gl~l---~~~~~vi~~~~~wn~~~~-~Q~~gR~~R~ 70 (105)
.+.++.+...+...+ ...++...-..+ ...-.+||+|||+..... .+....+...
T Consensus 82 ~~N~~~l~~~~~~~v--~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~ 140 (183)
T PF03602_consen 82 KKNLEKLGLEDKIRV--IKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAEN 140 (183)
T ss_dssp HHHHHHHT-GGGEEE--EESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCcceee--eccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHC
Confidence 344555554333433 333443322233 355679999999999884 7777777643
No 185
>KOG0922|consensus
Probab=35.94 E-value=18 Score=28.74 Aligned_cols=27 Identities=19% Similarity=0.084 Sum_probs=22.8
Q ss_pred CCCcChHhHHHHhhhccCCCCeEEEEE
Q psy12190 54 FWNPGILTQAEDRAHRIGQQDSVLIQY 80 (105)
Q Consensus 54 ~wn~~~~~Q~~gR~~R~Gq~~~v~v~~ 80 (105)
|-+...-.||.||++|.|..+.-+.|.
T Consensus 362 ~ISkasA~QRaGRAGRt~pGkcyRLYt 388 (674)
T KOG0922|consen 362 PISKASANQRAGRAGRTGPGKCYRLYT 388 (674)
T ss_pred echHHHHhhhcccCCCCCCceEEEeee
Confidence 446788889999999999988887774
No 186
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=34.58 E-value=79 Score=26.28 Aligned_cols=49 Identities=8% Similarity=0.213 Sum_probs=35.6
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEec
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAE 52 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~ 52 (105)
.++|..+..++.+.++.... +.+.++++++......+.+.+...+|+=|
T Consensus 533 ~Lsg~~~~~e~~~~~~~l~~-g~~dIVIGTp~ll~~~v~f~~L~llVIDE 581 (926)
T TIGR00580 533 LLSRFRSAKEQNEILKELAS-GKIDILIGTHKLLQKDVKFKDLGLLIIDE 581 (926)
T ss_pred EEeccccHHHHHHHHHHHHc-CCceEEEchHHHhhCCCCcccCCEEEeec
Confidence 46788888888888888874 45778888877666666676766666544
No 187
>KOG0979|consensus
Probab=33.53 E-value=77 Score=26.66 Aligned_cols=45 Identities=9% Similarity=0.093 Sum_probs=33.0
Q ss_pred HHHHHhccCCCeeEEEEecccceeccccc-ccCeeEEecCCCCcChH
Q psy12190 15 SVVDQFQYEDKFRVAVLSITAANSGITLT-AANLVVFAELFWNPGIL 60 (105)
Q Consensus 15 ~~~~~F~~~~~~~vll~s~~~~~~Gl~l~-~~~~vi~~~~~wn~~~~ 60 (105)
.++...+...+...++++|+. -.||+.+ +.+.+.++..+|.+...
T Consensus 1007 ~mV~~ac~entsQyFliTPKL-LpgL~Ysenm~Il~v~ng~~~~~p~ 1052 (1072)
T KOG0979|consen 1007 IMVNMACKENTSQYFLITPKL-LPGLDYSENMKILCVMNGPWIAEPS 1052 (1072)
T ss_pred HHHHHhhcCCCcceEEecchh-cCCCChhhcceEEEEecCCcCCCCc
Confidence 466666666777788888665 5899988 66777778889977543
No 188
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=32.62 E-value=1.8e+02 Score=20.61 Aligned_cols=28 Identities=11% Similarity=0.190 Sum_probs=19.9
Q ss_pred ccceecccccccCeeEEecCCCCcChHhHHH
Q psy12190 34 TAANSGITLTAANLVVFAELFWNPGILTQAE 64 (105)
Q Consensus 34 ~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~ 64 (105)
.....|+| ++-+|++.|||......|.+
T Consensus 228 ~~d~~gm~---gSGMivINPPwtle~ql~~~ 255 (279)
T COG2961 228 DSDPRGMN---GSGMIVINPPWTLEQQLRAA 255 (279)
T ss_pred CCCCCCcc---ceeEEEECCCccHHHHHHHH
Confidence 34444554 67789999999887776654
No 189
>PF07208 DUF1414: Protein of unknown function (DUF1414); InterPro: IPR009857 This family consists of several hypothetical bacterial proteins of around 70 residues in length. Members of this family are often referred to as YejL. The function of this family is unknown.; PDB: 2JPQ_A 2JUZ_B 2JUW_B 2QTI_A 2OTA_A 2JR2_A 2JRX_A.
Probab=31.97 E-value=57 Score=16.46 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=13.0
Q ss_pred CCCCHHHHHHHHHHhc
Q psy12190 6 GSVGSEERKSVVDQFQ 21 (105)
Q Consensus 6 g~~~~~~r~~~~~~F~ 21 (105)
.++++++|+.+.+.|.
T Consensus 22 ~~V~~~qR~~iAe~Fa 37 (44)
T PF07208_consen 22 TSVPPAQRQAIAEKFA 37 (44)
T ss_dssp HCS-HHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHH
Confidence 4678999999999996
No 190
>PF14202 TnpW: Transposon-encoded protein TnpW
Probab=31.42 E-value=69 Score=15.35 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=15.9
Q ss_pred ccCCCCeEEEEEEe----eCCCHHHHHHHHHH
Q psy12190 69 RIGQQDSVLIQYLV----AKQTADDYLWPLVM 96 (105)
Q Consensus 69 R~Gq~~~v~v~~l~----~~~s~d~~i~~~~~ 96 (105)
|+| +.+++.... +..|+++++.+++.
T Consensus 6 kIG--~Tty~V~~~F~~~s~et~~DKi~rli~ 35 (37)
T PF14202_consen 6 KIG--KTTYVVEVHFSETSKETMQDKIKRLIR 35 (37)
T ss_pred EEC--CEEEEEEEEECCCccccHHHHHHHHHh
Confidence 455 445544444 45678888887765
No 191
>PLN00204 CP12 gene family protein; Provisional
Probab=31.40 E-value=1.3e+02 Score=18.68 Aligned_cols=55 Identities=13% Similarity=0.009 Sum_probs=28.5
Q ss_pred cccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCC-CeEEEEEEeeCCCHHHHHHHHHHh
Q psy12190 33 ITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQ-DSVLIQYLVAKQTADDYLWPLVMT 97 (105)
Q Consensus 33 ~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~-~~v~v~~l~~~~s~d~~i~~~~~~ 97 (105)
+++...+-+.+.+..++.+..+|.. ..|.|.. ..+...+- +..+++++|-+.++.
T Consensus 12 ~r~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~v~a-~~~~L~e~Ie~aI~e 67 (126)
T PLN00204 12 PRVLARATDRPKAQGPVKLNNPWKR---------GSRLGSGRMQVRPVRA-APEGISEKVEKSIKE 67 (126)
T ss_pred chhhcccCCCccccceeeccCcccc---------cccccCCceEEEeeec-CCccHHHHHHHHHHH
Confidence 3444445555656666666666654 4555532 12222222 234488888776654
No 192
>PF09776 Mitoc_L55: Mitochondrial ribosomal protein L55; InterPro: IPR018615 Members of this family are involved in mitochondrial biogenesis and G2/M phase cell cycle progression. They form a component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins.
Probab=30.68 E-value=91 Score=19.16 Aligned_cols=72 Identities=10% Similarity=0.071 Sum_probs=48.1
Q ss_pred eeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEEeeCCCHHHHHHHHHHhh
Q psy12190 26 FRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYLVAKQTADDYLWPLVMTK 98 (105)
Q Consensus 26 ~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l~~~~s~d~~i~~~~~~K 98 (105)
..++|+.++...--+....-..+|-+..+-+.-.++++-.|..+-..+..+.+-. ..++++|..-|.....|
T Consensus 45 Ypv~lV~pDGSTI~Iry~EPR~ii~mPlDl~~LSeeERk~rl~kR~pk~k~~~~~-e~eD~Fd~~~Y~~fwkK 116 (116)
T PF09776_consen 45 YPVLLVRPDGSTINIRYHEPRRIIKMPLDLDTLSEEERKARLRKRKPKKKIKIEE-ELEDDFDAEKYKKFWKK 116 (116)
T ss_pred ccEEEEecCCCEEEEeccChHHHhccccCcccCCHHHHHHHHHHhCCccccccch-hhcccCCHHHHHHHhhC
Confidence 4477888787777777778888888888877777777777776554443333322 33667777666655443
No 193
>PF10623 PilI: Plasmid conjugative transfer protein PilI; InterPro: IPR018897 The thin pilus of plasmid R64 belongs to the type IV family and is required for liquid matings. PilI is one of 14 genes that have been identified as being involved in biogenesis of the R64 thin pilus [].
Probab=30.65 E-value=80 Score=18.04 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHhccCCCeeEEEEe
Q psy12190 8 VGSEERKSVVDQFQYEDKFRVAVLS 32 (105)
Q Consensus 8 ~~~~~r~~~~~~F~~~~~~~vll~s 32 (105)
.+..+-..++..|..++++.|+++.
T Consensus 26 ~~~~D~~~i~r~f~TpdN~lV~V~~ 50 (83)
T PF10623_consen 26 KPDNDPDKIARRFCTPDNCLVCVLQ 50 (83)
T ss_pred CCCCCHHHHHhhccCcCCeEEEEEe
Confidence 4556778899999999988776655
No 194
>PF09010 AsiA: Anti-Sigma Factor A; InterPro: IPR015100 Anti-sigma factor A is a transcriptional inhibitor that inhibits sigma 70-directed transcription by weakening its interaction with the core of the host's RNA polymerase. It is an all-helical protein, composed of six helical segments and intervening loops and turns, as well as a helix-turn-helix DNA binding motif, although neither free anti-sigma factor nor anti-sigma factor bound to sigma-70 has been shown to interact directly with DNA. In solution, the protein forms a symmetric dimer of small (10.59 kDa) protomers, which are composed of helix and coil regions and are devoid of beta-strand/sheet secondary structural elements []. ; PDB: 1TKV_A 1JR5_B 1TLH_A 1TL6_A.
Probab=30.36 E-value=33 Score=20.09 Aligned_cols=17 Identities=18% Similarity=0.495 Sum_probs=14.1
Q ss_pred CCCCHHHHHHHHHHhcc
Q psy12190 6 GSVGSEERKSVVDQFQY 22 (105)
Q Consensus 6 g~~~~~~r~~~~~~F~~ 22 (105)
+++++++|.++++.|+.
T Consensus 60 ~~lt~~ek~elieeFn~ 76 (91)
T PF09010_consen 60 KRLTQEEKEELIEEFNE 76 (91)
T ss_dssp HTS-HHHHHHHHHHSHH
T ss_pred HHcCHHHHHHHHHHHhh
Confidence 56899999999999984
No 195
>PRK07261 topology modulation protein; Provisional
Probab=29.46 E-value=1.3e+02 Score=19.15 Aligned_cols=64 Identities=11% Similarity=0.100 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhc-cCCCC
Q psy12190 9 GSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHR-IGQQD 74 (105)
Q Consensus 9 ~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R-~Gq~~ 74 (105)
+.++..+.+..+-..+. .|+=.+........-+..|+.+|++++|. .....+.+.|..+ .|+.+
T Consensus 44 ~~~~~~~~~~~~~~~~~-wIidg~~~~~~~~~~l~~ad~vI~Ld~p~-~~~~~R~lkR~~~~rg~~r 108 (171)
T PRK07261 44 DDDDMIADISNFLLKHD-WIIDGNYSWCLYEERMQEADQIIFLNFSR-FNCLYRAFKRYLKYRGKTR 108 (171)
T ss_pred CHHHHHHHHHHHHhCCC-EEEcCcchhhhHHHHHHHCCEEEEEcCCH-HHHHHHHHHHHHHHcCCcC
Confidence 34455555555543332 23222211112234456899999999994 4445577777665 35543
No 196
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=29.17 E-value=1.2e+02 Score=21.98 Aligned_cols=90 Identities=9% Similarity=0.164 Sum_probs=48.3
Q ss_pred EECCCCHHHHHHHHHHhccCCCeeEEEEecc---cceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEE
Q psy12190 4 IDGSVGSEERKSVVDQFQYEDKFRVAVLSIT---AANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQY 80 (105)
Q Consensus 4 ~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~---~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~ 80 (105)
+-.+.+.-+|+.+.+.+...+.-+|.|+.-. +.|.|+++....-..++|..-.-... = -+ ....+...+
T Consensus 100 vP~~~T~verrA~~~a~~~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtTdi-a---vi----slggiv~s~ 171 (326)
T PF06723_consen 100 VPSGITEVERRALIDAARQAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTTDI-A---VI----SLGGIVASR 171 (326)
T ss_dssp E-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEE-E---EE----ETTEEEEEE
T ss_pred eCCCCCHHHHHHHHHHHHHcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEECCCeEEE-E---EE----ECCCEEEEE
Confidence 4567788899999999987665667666643 45677777765555555544211111 0 00 111222233
Q ss_pred Ee--eCCCHHHHHHHHHHhhhhc
Q psy12190 81 LV--AKQTADDYLWPLVMTKLDV 101 (105)
Q Consensus 81 l~--~~~s~d~~i~~~~~~K~~~ 101 (105)
.+ .-+++|+.+.+.+.+|.++
T Consensus 172 si~~gG~~~DeaI~~~ir~~y~l 194 (326)
T PF06723_consen 172 SIRIGGDDIDEAIIRYIREKYNL 194 (326)
T ss_dssp EES-SHHHHHHHHHHHHHHHHSE
T ss_pred EEEecCcchhHHHHHHHHHhhCc
Confidence 33 2246999999999888764
No 197
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=28.81 E-value=2.1e+02 Score=20.04 Aligned_cols=86 Identities=13% Similarity=0.156 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHHHHhc-cCCCeeEEEEecc--cceeccc-c------cccCeeEEecCCCCcChHhHHHHhhhccCCCCe
Q psy12190 6 GSVGSEERKSVVDQFQ-YEDKFRVAVLSIT--AANSGIT-L------TAANLVVFAELFWNPGILTQAEDRAHRIGQQDS 75 (105)
Q Consensus 6 g~~~~~~r~~~~~~F~-~~~~~~vll~s~~--~~~~Gl~-l------~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~ 75 (105)
.+++.++--+.+.+++ ...+..+++++.- ....|+. + ..++-+|+-|+|+......... +.. +.
T Consensus 67 ~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~--~~~----~g 140 (259)
T PF00290_consen 67 NGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREA--AKK----HG 140 (259)
T ss_dssp TT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHH--HHH----TT
T ss_pred CCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHH--HHH----cC
Confidence 4555666667778887 6667777777754 3445654 1 1467889999998654443322 222 44
Q ss_pred EEEEEEeeCCCHHHHHHHHHHh
Q psy12190 76 VLIQYLVAKQTADDYLWPLVMT 97 (105)
Q Consensus 76 v~v~~l~~~~s~d~~i~~~~~~ 97 (105)
+....|++..|-++++.++.+.
T Consensus 141 l~~I~lv~p~t~~~Ri~~i~~~ 162 (259)
T PF00290_consen 141 LDLIPLVAPTTPEERIKKIAKQ 162 (259)
T ss_dssp -EEEEEEETTS-HHHHHHHHHH
T ss_pred CeEEEEECCCCCHHHHHHHHHh
Confidence 7788888998888888777654
No 198
>PRK10689 transcription-repair coupling factor; Provisional
Probab=28.71 E-value=98 Score=26.43 Aligned_cols=47 Identities=9% Similarity=0.145 Sum_probs=32.9
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEE
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVF 50 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~ 50 (105)
.++|..+.+++...++...+ +.+.++++++......+.+.....+|+
T Consensus 682 ~l~g~~s~~e~~~il~~l~~-g~~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 682 MLSRFRSAKEQTQILAEAAE-GKIDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred EEECCCCHHHHHHHHHHHHh-CCCCEEEECHHHHhCCCCHhhCCEEEE
Confidence 35788888888888888763 456788888776655556656555554
No 199
>PRK01355 azoreductase; Reviewed
Probab=28.25 E-value=66 Score=21.10 Aligned_cols=30 Identities=17% Similarity=0.060 Sum_probs=21.9
Q ss_pred ccccCeeEEecCCCCcChHhH---HHHhhhccC
Q psy12190 42 LTAANLVVFAELFWNPGILTQ---AEDRAHRIG 71 (105)
Q Consensus 42 l~~~~~vi~~~~~wn~~~~~Q---~~gR~~R~G 71 (105)
+..|+.+|+..|-||.+.-.| .+.|+.+.|
T Consensus 75 l~~AD~iV~~sP~y~~~ipa~LK~~iDrv~~~~ 107 (199)
T PRK01355 75 LKSVDKVVISCPMTNFNVPATLKNYLDHIAVAN 107 (199)
T ss_pred HHhCCEEEEEcCccccCChHHHHHHHHHHHhcC
Confidence 447899999999998766654 556665543
No 200
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=27.93 E-value=1.3e+02 Score=19.27 Aligned_cols=29 Identities=17% Similarity=0.396 Sum_probs=17.3
Q ss_pred CCCCHHHHHHHHHHhccCCCeeEEEEecc
Q psy12190 6 GSVGSEERKSVVDQFQYEDKFRVAVLSIT 34 (105)
Q Consensus 6 g~~~~~~r~~~~~~F~~~~~~~vll~s~~ 34 (105)
|..+..+-.+.+++..+++.++++++...
T Consensus 20 ~~~~~~~l~~~l~~a~~d~~v~~vvl~~~ 48 (177)
T cd07014 20 GNVSGDTTAAQIRDARLDPKVKAIVLRVN 48 (177)
T ss_pred CCcCHHHHHHHHHHHhcCCCceEEEEEee
Confidence 34455566666666666666666666544
No 201
>KOG0442|consensus
Probab=27.30 E-value=1.1e+02 Score=25.41 Aligned_cols=51 Identities=8% Similarity=0.042 Sum_probs=34.4
Q ss_pred cccCeeEEecCCCCcChHhHHHHhhhccCCC---CeEEEEEEeeCCCHHHHHHHHHHhhh
Q psy12190 43 TAANLVVFAELFWNPGILTQAEDRAHRIGQQ---DSVLIQYLVAKQTADDYLWPLVMTKL 99 (105)
Q Consensus 43 ~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~---~~v~v~~l~~~~s~d~~i~~~~~~K~ 99 (105)
-..++||+|+++-++- ..+-.++.. +..+||.++..+|+||.-+-..-++.
T Consensus 543 ~kP~yvi~y~~~~~~v------RqiEvYka~~p~~~lkVYfl~y~~S~EeQ~yltSirRE 596 (892)
T KOG0442|consen 543 LKPRYVIMYESDLTFV------RQIEVYKATRPFRSLKVYFLYYGESTEEQRYLTSIRRE 596 (892)
T ss_pred hCCceEEEEcCCCCce------eeeeeeeccCCCCCceEEEEEecCchHHHHHHHHHHHh
Confidence 3667899999886542 233333333 56779999999999987776555443
No 202
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=27.29 E-value=2.6e+02 Score=23.16 Aligned_cols=49 Identities=12% Similarity=0.259 Sum_probs=29.4
Q ss_pred CeeEEEEecccceeccccc--ccCeeEEe-cC-CCCcCh--HhHHHHhhhccCCCC
Q psy12190 25 KFRVAVLSITAANSGITLT--AANLVVFA-EL-FWNPGI--LTQAEDRAHRIGQQD 74 (105)
Q Consensus 25 ~~~vll~s~~~~~~Gl~l~--~~~~vi~~-~~-~wn~~~--~~Q~~gR~~R~Gq~~ 74 (105)
+.+|++- +.+...|+++. .-+.|..+ .| ...|.. ..|.+||+..+...+
T Consensus 326 ~~~VviY-T~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~~e 380 (824)
T PF02399_consen 326 KYDVVIY-TPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLDNE 380 (824)
T ss_pred ceeEEEE-eceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhccCe
Confidence 3556444 46777888876 23444444 22 233443 479999999887543
No 203
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=27.17 E-value=1.1e+02 Score=21.08 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=22.2
Q ss_pred HHHHHHHHhccCCCeeEEEEec---ccceecccccc
Q psy12190 12 ERKSVVDQFQYEDKFRVAVLSI---TAANSGITLTA 44 (105)
Q Consensus 12 ~r~~~~~~F~~~~~~~vll~s~---~~~~~Gl~l~~ 44 (105)
+-...++.+..+++++++|++. +..+.|.||..
T Consensus 39 ~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~ 74 (262)
T PRK06144 39 GLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQ 74 (262)
T ss_pred HHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHH
Confidence 3445566666677788887764 24678899875
No 204
>PHA03371 circ protein; Provisional
Probab=26.82 E-value=69 Score=22.14 Aligned_cols=45 Identities=20% Similarity=0.181 Sum_probs=31.4
Q ss_pred cceecccccccCee-EEecCCC-------------CcChHhHHHHhhhccCCCCeEEEE
Q psy12190 35 AANSGITLTAANLV-VFAELFW-------------NPGILTQAEDRAHRIGQQDSVLIQ 79 (105)
Q Consensus 35 ~~~~Gl~l~~~~~v-i~~~~~w-------------n~~~~~Q~~gR~~R~Gq~~~v~v~ 79 (105)
.+|.=+||+..+.+ |+.+.+- +...+.|.|||++=+|..++-.+|
T Consensus 29 LaGR~vDLPgGde~~If~~~g~T~~~~g~f~~~g~~r~~~v~fIGRAya~g~~RkF~iy 87 (240)
T PHA03371 29 LAGRTVDLPGGDELRIFADCGTTTVNFGKFVRPGSSRLAYVKFIGRAYAIGSGRKFVIY 87 (240)
T ss_pred hcCcceecCCCCeEEEeccCCCCccceeeEecCCCCcceeeeeeehhhccCCCceEEEE
Confidence 45566777777776 5444332 444566999999999988877666
No 205
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=26.56 E-value=33 Score=28.17 Aligned_cols=26 Identities=19% Similarity=0.074 Sum_probs=22.1
Q ss_pred CCcChHhHHHHhhhccCCCCeEEEEE
Q psy12190 55 WNPGILTQAEDRAHRIGQQDSVLIQY 80 (105)
Q Consensus 55 wn~~~~~Q~~gR~~R~Gq~~~v~v~~ 80 (105)
-+...-.||.||++|.+.....+.|.
T Consensus 360 ISqAsA~QRaGRAGR~~pGicyRLys 385 (845)
T COG1643 360 ISKASADQRAGRAGRTGPGICYRLYS 385 (845)
T ss_pred echhhhhhhccccccCCCceEEEecC
Confidence 36777889999999999988888774
No 206
>PF15265 FAM196: FAM196 family
Probab=26.49 E-value=75 Score=24.61 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=23.4
Q ss_pred hHHHHhhhccCCC--------C-eEEEEEEeeCCCHHHHHHHHHHhhhh
Q psy12190 61 TQAEDRAHRIGQQ--------D-SVLIQYLVAKQTADDYLWPLVMTKLD 100 (105)
Q Consensus 61 ~Q~~gR~~R~Gq~--------~-~v~v~~l~~~~s~d~~i~~~~~~K~~ 100 (105)
.++.||.+|.||. + .+-||-.-.+.--.|.-++-+.+++.
T Consensus 426 A~rEGrsYRTGQD~nNCsTCqntACIIYSVE~DFrqQE~r~~~vl~~L~ 474 (514)
T PF15265_consen 426 AHREGRSYRTGQDTNNCSTCQNTACIIYSVEYDFRQQEGRFQPVLKRLD 474 (514)
T ss_pred ccccccccccCccccccchhcCceeEEEEeccchhhhHhHHHHHHHhcc
Confidence 4889999999985 2 24555544444444444444444443
No 207
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=26.23 E-value=1.5e+02 Score=23.94 Aligned_cols=50 Identities=18% Similarity=0.342 Sum_probs=39.4
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecC
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAEL 53 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~ 53 (105)
-++|+++..+|.+++++-. ++...++|.+=...-..+.+.+.-.||+=|.
T Consensus 344 lLtG~~kgk~r~~~l~~l~-~G~~~ivVGTHALiQd~V~F~~LgLVIiDEQ 393 (677)
T COG1200 344 LLTGSLKGKARKEILEQLA-SGEIDIVVGTHALIQDKVEFHNLGLVIIDEQ 393 (677)
T ss_pred EeecccchhHHHHHHHHHh-CCCCCEEEEcchhhhcceeecceeEEEEecc
Confidence 4789999999999999988 4557788888777778888887776665443
No 208
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=25.79 E-value=1.9e+02 Score=18.52 Aligned_cols=30 Identities=10% Similarity=0.302 Sum_probs=24.9
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVL 31 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~ 31 (105)
+.++|.++..-|+.+.+.++.-+.+++++.
T Consensus 53 LlVTG~vT~~~~e~lkk~Yea~PePKiViA 82 (148)
T COG3260 53 LLVTGAVTRQMREPLKKAYEAMPEPKIVIA 82 (148)
T ss_pred EEEeccccHHHHHHHHHHHHhCCCCcEEEE
Confidence 457899999999999999998777777543
No 209
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=25.75 E-value=1.2e+02 Score=20.67 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=22.1
Q ss_pred HHHHHHHHhccCCCeeEEEEecc--cceeccccccc
Q psy12190 12 ERKSVVDQFQYEDKFRVAVLSIT--AANSGITLTAA 45 (105)
Q Consensus 12 ~r~~~~~~F~~~~~~~vll~s~~--~~~~Gl~l~~~ 45 (105)
+-...++.+..+++++++|++.. ..+.|.||...
T Consensus 34 ~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~ 69 (260)
T PRK07511 34 AGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRL 69 (260)
T ss_pred HHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHH
Confidence 34455666666778888877642 44678887743
No 210
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=25.36 E-value=1.2e+02 Score=20.72 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=36.8
Q ss_pred eEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCe-EEEEEEeeCCCH
Q psy12190 27 RVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDS-VLIQYLVAKQTA 87 (105)
Q Consensus 27 ~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~-v~v~~l~~~~s~ 87 (105)
.++++--...+.|++|..-....+.-.+-+..++.|+ || -+|=.+. ..+-++.+...+
T Consensus 136 ~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~Qm-gR--wFGYR~gY~dl~Ri~~~~~l 194 (239)
T PF10593_consen 136 NVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQM-GR--WFGYRPGYEDLCRIYMPEEL 194 (239)
T ss_pred eEEEECCccccCceeECCcEEEEecCCCchHHHHHHH-hh--cccCCcccccceEEecCHHH
Confidence 4556666888999999988888887777666666665 33 3344332 344455554433
No 211
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=25.14 E-value=1.1e+02 Score=21.24 Aligned_cols=33 Identities=9% Similarity=0.173 Sum_probs=22.3
Q ss_pred HHHHHHHHhccCCCeeEEEEecc----cceecccccc
Q psy12190 12 ERKSVVDQFQYEDKFRVAVLSIT----AANSGITLTA 44 (105)
Q Consensus 12 ~r~~~~~~F~~~~~~~vll~s~~----~~~~Gl~l~~ 44 (105)
+-...++.+..+++++++|++.. ..+.|.||..
T Consensus 42 eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~ 78 (278)
T PLN03214 42 SLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAE 78 (278)
T ss_pred HHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHH
Confidence 34445566666778888887753 4578888874
No 212
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=25.09 E-value=2.5e+02 Score=19.81 Aligned_cols=87 Identities=16% Similarity=0.157 Sum_probs=56.9
Q ss_pred ECCCCHHHHHHHHHHhcc-CCCeeEEEEecc--cceecccc-------cccCeeEEecCCCCcChHhHHHHhhhccCCCC
Q psy12190 5 DGSVGSEERKSVVDQFQY-EDKFRVAVLSIT--AANSGITL-------TAANLVVFAELFWNPGILTQAEDRAHRIGQQD 74 (105)
Q Consensus 5 ~g~~~~~~r~~~~~~F~~-~~~~~vll~s~~--~~~~Gl~l-------~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~ 74 (105)
.++++.++--++++.++. +.++.+.|++.- ....|+.- ..++-+++.|+|...........+ ..
T Consensus 73 ~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~------~~ 146 (265)
T COG0159 73 AAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAE------KH 146 (265)
T ss_pred HCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHH------Hc
Confidence 356777888888888883 455455555543 45566643 145677999998766654433333 45
Q ss_pred eEEEEEEeeCCCHHHHHHHHHHh
Q psy12190 75 SVLIQYLVAKQTADDYLWPLVMT 97 (105)
Q Consensus 75 ~v~v~~l~~~~s~d~~i~~~~~~ 97 (105)
.+....|++..|-++++-++.+.
T Consensus 147 gi~~I~lvaPtt~~~rl~~i~~~ 169 (265)
T COG0159 147 GIDPIFLVAPTTPDERLKKIAEA 169 (265)
T ss_pred CCcEEEEeCCCCCHHHHHHHHHh
Confidence 57777888888888877776553
No 213
>KOG1680|consensus
Probab=24.69 E-value=1.4e+02 Score=21.38 Aligned_cols=45 Identities=22% Similarity=0.206 Sum_probs=30.2
Q ss_pred HHHHHHHHHhccCCCeeEEEEecc--cceecccccccCeeEEecCCC
Q psy12190 11 EERKSVVDQFQYEDKFRVAVLSIT--AANSGITLTAANLVVFAELFW 55 (105)
Q Consensus 11 ~~r~~~~~~F~~~~~~~vll~s~~--~~~~Gl~l~~~~~vi~~~~~w 55 (105)
.+-.+.+..|.++++..++|++-. +.+.|.||......-+-|+.-
T Consensus 67 ~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~ 113 (290)
T KOG1680|consen 67 LELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSD 113 (290)
T ss_pred HHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhcccccccc
Confidence 345566777778888888777633 566888888766655555443
No 214
>PRK00170 azoreductase; Reviewed
Probab=24.65 E-value=1e+02 Score=19.86 Aligned_cols=28 Identities=36% Similarity=0.322 Sum_probs=20.8
Q ss_pred ccccCeeEEecCCCCcChHhH---HHHhhhc
Q psy12190 42 LTAANLVVFAELFWNPGILTQ---AEDRAHR 69 (105)
Q Consensus 42 l~~~~~vi~~~~~wn~~~~~Q---~~gR~~R 69 (105)
+..|+.||+..|-||.+.-.| .+.|+.+
T Consensus 84 i~~AD~iV~~sP~y~~~~pa~LK~~iDrv~~ 114 (201)
T PRK00170 84 FLAADKIVIAAPMYNFSIPTQLKAYIDLIAR 114 (201)
T ss_pred HHHCCEEEEeecccccCCcHHHHHHHHhhee
Confidence 557899999999998766654 5555544
No 215
>PRK13555 azoreductase; Provisional
Probab=24.38 E-value=1e+02 Score=20.59 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=22.9
Q ss_pred ccccCeeEEecCCCCcChHh---HHHHhhhccC
Q psy12190 42 LTAANLVVFAELFWNPGILT---QAEDRAHRIG 71 (105)
Q Consensus 42 l~~~~~vi~~~~~wn~~~~~---Q~~gR~~R~G 71 (105)
+..|+.+++.-|-||.+... ..+.|+.|.|
T Consensus 87 ~~~AD~lvi~~P~~n~~~Pa~LK~~iD~v~~~G 119 (208)
T PRK13555 87 FLEADKVVFAFPLWNFTVPAPLITYISYLSQAG 119 (208)
T ss_pred HHHcCEEEEEcCcccccchHHHHHHHHHHhcCC
Confidence 44679999999999876554 5677888764
No 216
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=24.36 E-value=1.3e+02 Score=20.08 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=12.6
Q ss_pred CeeEEecCCCCcChH
Q psy12190 46 NLVVFAELFWNPGIL 60 (105)
Q Consensus 46 ~~vi~~~~~wn~~~~ 60 (105)
-++||+|||++....
T Consensus 115 FDlVflDPPy~~~l~ 129 (187)
T COG0742 115 FDLVFLDPPYAKGLL 129 (187)
T ss_pred ccEEEeCCCCccchh
Confidence 689999999986555
No 217
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=23.99 E-value=1.4e+02 Score=20.31 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=23.9
Q ss_pred CCCHHHHH---HHHHHhccCCCeeEEEEec---ccceeccccccc
Q psy12190 7 SVGSEERK---SVVDQFQYEDKFRVAVLSI---TAANSGITLTAA 45 (105)
Q Consensus 7 ~~~~~~r~---~~~~~F~~~~~~~vll~s~---~~~~~Gl~l~~~ 45 (105)
.++.+-.. ..++....+++++++|++. +..+.|.||...
T Consensus 27 al~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~ 71 (260)
T PRK05809 27 ALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEM 71 (260)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhH
Confidence 34444434 4445555577788887774 345788888753
No 218
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=23.98 E-value=1.3e+02 Score=20.47 Aligned_cols=32 Identities=16% Similarity=0.296 Sum_probs=21.3
Q ss_pred HHHHHHHhccCCCeeEEEEecc---cceecccccc
Q psy12190 13 RKSVVDQFQYEDKFRVAVLSIT---AANSGITLTA 44 (105)
Q Consensus 13 r~~~~~~F~~~~~~~vll~s~~---~~~~Gl~l~~ 44 (105)
-...++.+..++.++++|++.. ..+.|.||..
T Consensus 35 l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~ 69 (260)
T PRK05980 35 LLARLDAIEVDESVRAVILTGAGDRAFSAGADIHE 69 (260)
T ss_pred HHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHH
Confidence 3445556666777888777642 4678888874
No 219
>PRK03971 putative deoxyhypusine synthase; Provisional
Probab=23.86 E-value=1.1e+02 Score=22.28 Aligned_cols=68 Identities=16% Similarity=0.200 Sum_probs=37.8
Q ss_pred CEEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccC
Q psy12190 1 YIRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIG 71 (105)
Q Consensus 1 ~~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~G 71 (105)
|+.+.|.+.+..-..++...-+.+-+.+++.+....-+ |+.+|=. -++-..|.....+=+.-.+.|+|
T Consensus 70 fL~~tg~misaGlr~~i~~Li~~~~Vd~iVtTganleh--Di~~~l~-~~~~G~f~~dd~~Lr~~ginRIg 137 (334)
T PRK03971 70 FLGYTSNIVSSGLREIIAYLVKEKKVDVIVTTAGGVEE--DFIKCLK-PFILGEWDVDGAELREKGINRIG 137 (334)
T ss_pred EEEccccccchhHHHHHHHHHHcCCeeEEEeCCCchHH--HHHHHhc-ccccCCCCCCHHHHHHcCCCccc
Confidence 56788998887777777777767777776655222222 4443322 33334444433333333445555
No 220
>cd04468 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain. eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed.
Probab=23.54 E-value=1.4e+02 Score=16.44 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=13.8
Q ss_pred HHHHHHHhccCCCeeEEEEe
Q psy12190 13 RKSVVDQFQYEDKFRVAVLS 32 (105)
Q Consensus 13 r~~~~~~F~~~~~~~vll~s 32 (105)
-+++.+.|.+++++.|.+++
T Consensus 37 g~~I~~~f~~gk~~~vtV~s 56 (69)
T cd04468 37 GKEIREKFDEGKDVLVTVLS 56 (69)
T ss_pred HHHHHHHHhCCCcEEEEEEc
Confidence 55677889877766665555
No 221
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=23.29 E-value=1.5e+02 Score=19.60 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=8.2
Q ss_pred ceecccccccCeeEEecC
Q psy12190 36 ANSGITLTAANLVVFAEL 53 (105)
Q Consensus 36 ~~~Gl~l~~~~~vi~~~~ 53 (105)
.+.|..|-.+...+++.|
T Consensus 82 ~s~gy~la~~aD~i~a~~ 99 (211)
T cd07019 82 ASGGYWISTPANYIVANP 99 (211)
T ss_pred hhHHHHHHHhCCEEEEcC
Confidence 345555554444444443
No 222
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=23.24 E-value=1e+02 Score=25.42 Aligned_cols=44 Identities=25% Similarity=0.257 Sum_probs=28.8
Q ss_pred EEecccceeccccc-ccC----------eeEEecCCCCcChHhHHHHhhhccCCC
Q psy12190 30 VLSITAANSGITLT-AAN----------LVVFAELFWNPGILTQAEDRAHRIGQQ 73 (105)
Q Consensus 30 l~s~~~~~~Gl~l~-~~~----------~vi~~~~~wn~~~~~Q~~gR~~R~Gq~ 73 (105)
-+++.++|.|.++. ..+ +||=.+-.=+-....|--||++|.|-.
T Consensus 481 TiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDp 535 (822)
T COG0653 481 TIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDP 535 (822)
T ss_pred ccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCc
Confidence 55669999999988 333 233333333333344999999999944
No 223
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=23.16 E-value=1.5e+02 Score=20.12 Aligned_cols=38 Identities=26% Similarity=0.336 Sum_probs=23.1
Q ss_pred CCCHHHHH---HHHHHhccCCCeeEEEEecc--cceecccccc
Q psy12190 7 SVGSEERK---SVVDQFQYEDKFRVAVLSIT--AANSGITLTA 44 (105)
Q Consensus 7 ~~~~~~r~---~~~~~F~~~~~~~vll~s~~--~~~~Gl~l~~ 44 (105)
.++.+-.. ..++.+..++.++++|++.. ..+.|.||..
T Consensus 23 al~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~ 65 (248)
T PRK06072 23 ALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSE 65 (248)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHH
Confidence 34444444 45556666777888877643 3467788763
No 224
>COG1582 FlgEa Uncharacterized protein, possibly involved in motility [Cell motility and secretion]
Probab=22.79 E-value=1.3e+02 Score=16.49 Aligned_cols=23 Identities=9% Similarity=0.224 Sum_probs=18.6
Q ss_pred EEeeCCCHHHHHHHHHHhhhhcC
Q psy12190 80 YLVAKQTADDYLWPLVMTKLDVP 102 (105)
Q Consensus 80 ~l~~~~s~d~~i~~~~~~K~~~~ 102 (105)
.++.+.|+||-+-+..+.|.++.
T Consensus 37 kyvVkEsveEVi~kI~~y~rkI~ 59 (67)
T COG1582 37 KYVVKESVEEVINKIIEYRRKIG 59 (67)
T ss_pred EEEEcccHHHHHHHHHHHHHHhh
Confidence 46789999999999888876653
No 225
>KOG2915|consensus
Probab=22.47 E-value=1.6e+02 Score=21.28 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=30.3
Q ss_pred HHHHHHHHhccCC-CeeEEEEecccceecccc-cccCeeEEecCC
Q psy12190 12 ERKSVVDQFQYED-KFRVAVLSITAANSGITL-TAANLVVFAELF 54 (105)
Q Consensus 12 ~r~~~~~~F~~~~-~~~vll~s~~~~~~Gl~l-~~~~~vi~~~~~ 54 (105)
.-+++.+.|++.+ ...+-+..-++++.|... ...-..+|+|+|
T Consensus 142 Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVFLDlP 186 (314)
T KOG2915|consen 142 RAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVFLDLP 186 (314)
T ss_pred HHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceEEEcCC
Confidence 3456889998644 223445666888888887 566777888877
No 226
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=22.43 E-value=1.5e+02 Score=20.22 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=21.7
Q ss_pred HHHHHHHHhccCCCeeEEEEecc---cceecccccc
Q psy12190 12 ERKSVVDQFQYEDKFRVAVLSIT---AANSGITLTA 44 (105)
Q Consensus 12 ~r~~~~~~F~~~~~~~vll~s~~---~~~~Gl~l~~ 44 (105)
+-...++.+..+++++++|++.. ..+.|.||..
T Consensus 35 ~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~ 70 (260)
T PRK07657 35 ELQNILTQINEEANVRVVILTGAGEKAFCAGADLKE 70 (260)
T ss_pred HHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHh
Confidence 33445555556778888877752 4678888875
No 227
>PF03543 Peptidase_C58: Yersinia/Haemophilus virulence surface antigen; InterPro: IPR022767 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C58. Family C58 contains endopeptidases that also act as transamidases, attaching a lipid moiety to the newly exposed N terminus of the substrate. This entry includes protein YopT from Yersinia pestis involved in bacterial pathogenesis and Rhizobium sp. (strain NGR234) nodulation outer protein T (NopT).; GO: 0004197 cysteine-type endopeptidase activity; PDB: 1UKF_A.
Probab=22.17 E-value=2.5e+02 Score=18.73 Aligned_cols=50 Identities=14% Similarity=0.226 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHhccCCCeeEEEEec---ccceeccccc-ccCeeEEecCCC
Q psy12190 6 GSVGSEERKSVVDQFQYEDKFRVAVLSI---TAANSGITLT-AANLVVFAELFW 55 (105)
Q Consensus 6 g~~~~~~r~~~~~~F~~~~~~~vll~s~---~~~~~Gl~l~-~~~~vi~~~~~w 55 (105)
+..+...-..+++....+++..+++... ...++.+-+. ....+.|+||.+
T Consensus 109 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Ha~a~~~~~~~~~fFDPN~ 162 (204)
T PF03543_consen 109 GSTSAENYESILNAITDPGSNHLLSLKSLKGEGGGHAMAASVDGGKVTFFDPNY 162 (204)
T ss_dssp -S-HHHHHHHHHHHH-STT-EEEEEEEE--TTTEEEEEEEEEETTEEEEEETTT
T ss_pred cccchhhHHHHHHHHHcCCCCeEEEEEEecCCCCCceEEEEEeCCEEEEECCCc
Confidence 4455666677778887666555544333 3344444444 355699999976
No 228
>KOG1681|consensus
Probab=22.13 E-value=1.8e+02 Score=20.41 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=18.9
Q ss_pred HHHHhccCCCeeEEEEecc--cceecccccccC
Q psy12190 16 VVDQFQYEDKFRVAVLSIT--AANSGITLTAAN 46 (105)
Q Consensus 16 ~~~~F~~~~~~~vll~s~~--~~~~Gl~l~~~~ 46 (105)
+++.-..++.++++|++.. ....|++|-.-.
T Consensus 57 cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~ 89 (292)
T KOG1681|consen 57 CFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMA 89 (292)
T ss_pred HHHhhccCCCceEEEEecCCcceecccCcchhh
Confidence 3333346788999888833 344788865333
No 229
>PRK05580 primosome assembly protein PriA; Validated
Probab=22.10 E-value=3.1e+02 Score=21.93 Aligned_cols=48 Identities=13% Similarity=0.166 Sum_probs=30.4
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEec
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAE 52 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~ 52 (105)
..++|+++..+|.+...+... +...+++.+..+.- +.+.+...+|+-|
T Consensus 219 ~~~~s~~s~~~r~~~~~~~~~-g~~~IVVgTrsal~--~p~~~l~liVvDE 266 (679)
T PRK05580 219 AVLHSGLSDGERLDEWRKAKR-GEAKVVIGARSALF--LPFKNLGLIIVDE 266 (679)
T ss_pred EEEECCCCHHHHHHHHHHHHc-CCCCEEEeccHHhc--ccccCCCEEEEEC
Confidence 357899999988877777664 34667777644321 3344555555544
No 230
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=21.83 E-value=2.4e+02 Score=18.37 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=19.7
Q ss_pred cCeeEEecCCCCcChHhHHHHhhhcc
Q psy12190 45 ANLVVFAELFWNPGILTQAEDRAHRI 70 (105)
Q Consensus 45 ~~~vi~~~~~wn~~~~~Q~~gR~~R~ 70 (105)
...+|++|||+....+.+....+..-
T Consensus 121 ~~dvv~~DPPy~~~~~~~~l~~l~~~ 146 (189)
T TIGR00095 121 FDNVIYLDPPFFNGALQALLELCENN 146 (189)
T ss_pred CceEEEECcCCCCCcHHHHHHHHHHC
Confidence 36899999999887777766666543
No 231
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=21.82 E-value=1.6e+02 Score=20.11 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=22.5
Q ss_pred HHHHHHHHHhccCCCeeEEEEecc---cceecccccc
Q psy12190 11 EERKSVVDQFQYEDKFRVAVLSIT---AANSGITLTA 44 (105)
Q Consensus 11 ~~r~~~~~~F~~~~~~~vll~s~~---~~~~Gl~l~~ 44 (105)
.+-...++.+..++.++++|++.. ..+.|.||..
T Consensus 34 ~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~ 70 (259)
T PRK06494 34 FELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKE 70 (259)
T ss_pred HHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHh
Confidence 344556666666777888777642 4567888874
No 232
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=21.62 E-value=1.5e+02 Score=20.39 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=23.1
Q ss_pred CCHHHHH---HHHHHhccCCCeeEEEEecc--cceecccccc
Q psy12190 8 VGSEERK---SVVDQFQYEDKFRVAVLSIT--AANSGITLTA 44 (105)
Q Consensus 8 ~~~~~r~---~~~~~F~~~~~~~vll~s~~--~~~~Gl~l~~ 44 (105)
++.+-.. +.++.+..+++++++|++.. ..+.|.||..
T Consensus 36 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~ 77 (268)
T PRK07327 36 ADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLAL 77 (268)
T ss_pred CCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHH
Confidence 4444444 44555566777888877643 4567888864
No 233
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=21.39 E-value=1.6e+02 Score=20.07 Aligned_cols=39 Identities=10% Similarity=0.160 Sum_probs=23.9
Q ss_pred CCCCHHHHHHH---HHHhccCCCeeEEEEecc--cceecccccc
Q psy12190 6 GSVGSEERKSV---VDQFQYEDKFRVAVLSIT--AANSGITLTA 44 (105)
Q Consensus 6 g~~~~~~r~~~---~~~F~~~~~~~vll~s~~--~~~~Gl~l~~ 44 (105)
+.++.+-..++ ++.+..+++++++|++.. ..+.|.||..
T Consensus 24 Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~ 67 (255)
T PRK09674 24 NALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNE 67 (255)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHh
Confidence 34555544444 444455777888877643 4567888874
No 234
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=21.39 E-value=1.7e+02 Score=20.00 Aligned_cols=38 Identities=11% Similarity=0.144 Sum_probs=23.9
Q ss_pred CCCHHHHHHH---HHHhccCCCeeEEEEecc---cceecccccc
Q psy12190 7 SVGSEERKSV---VDQFQYEDKFRVAVLSIT---AANSGITLTA 44 (105)
Q Consensus 7 ~~~~~~r~~~---~~~F~~~~~~~vll~s~~---~~~~Gl~l~~ 44 (105)
.++.+-..++ ++....+++++++|++.. ..+.|.||..
T Consensus 25 al~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~ 68 (258)
T PRK09076 25 TWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNL 68 (258)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHH
Confidence 3555544444 444555677888877752 3678888874
No 235
>PF09043 Lys-AminoMut_A: D-Lysine 5,6-aminomutase alpha subunit; InterPro: IPR015130 This domain is found in proteins involved in the 1,2 rearrangement of the terminal amino group of DL-lysine and of L-beta-lysine, using adenosylcobalamin (AdoCbl) and pyridoxal-5'-phosphate as cofactors. The structure is predominantly a PLP-binding TIM barrel domain, with several additional alpha-helices and beta-strands at the N and C termini. These helices and strands form an intertwined accessory clamp structure that wraps around the sides of the TIM barrel and extends up toward the Ado ligand of the Cbl cofactor, providing most of the interactions observed between the protein and the Ado ligand of the Cbl, suggesting that its role is mainly in stabilising AdoCbl in the precatalytic resting state. ; PDB: 3KP1_A 3KOW_A 3KOZ_A 3KOY_B 3KOX_A 3KP0_C 1XRS_A.
Probab=21.30 E-value=1.4e+02 Score=22.87 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=24.6
Q ss_pred HHHhhhccCCCCeEEEEEEeeCCCHHHHHHHHHHh
Q psy12190 63 AEDRAHRIGQQDSVLIQYLVAKQTADDYLWPLVMT 97 (105)
Q Consensus 63 ~~gR~~R~Gq~~~v~v~~l~~~~s~d~~i~~~~~~ 97 (105)
|..-+.++|......+|..++.|.++|.+.+....
T Consensus 134 Re~~~~~~g~~p~P~iy~iVAtG~iyeDi~qaraA 168 (509)
T PF09043_consen 134 REEYIERIGPGPKPVIYVIVATGNIYEDIRQARAA 168 (509)
T ss_dssp HHHHHHHH--ECSSEEEEEE-SS-HHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCeEEEEEecCchHHHHHHHHHH
Confidence 44445677888888999999999999999887654
No 236
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=21.00 E-value=56 Score=21.41 Aligned_cols=16 Identities=6% Similarity=0.331 Sum_probs=11.7
Q ss_pred cCeeEEecCCCCcChH
Q psy12190 45 ANLVVFAELFWNPGIL 60 (105)
Q Consensus 45 ~~~vi~~~~~wn~~~~ 60 (105)
++.-+.++|+|++...
T Consensus 149 V~V~l~~dp~W~~~~~ 164 (174)
T TIGR03406 149 VEVELVFDPPWSREMM 164 (174)
T ss_pred EEEEEEecCCCChHHC
Confidence 4445789999998654
No 237
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=20.60 E-value=1.6e+02 Score=20.24 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=21.7
Q ss_pred HHHHHHHHhccCCCeeEEEEecc---cceecccccc
Q psy12190 12 ERKSVVDQFQYEDKFRVAVLSIT---AANSGITLTA 44 (105)
Q Consensus 12 ~r~~~~~~F~~~~~~~vll~s~~---~~~~Gl~l~~ 44 (105)
+-.+.++.+..++.++++|++.. ..+.|.||..
T Consensus 42 ~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~ 77 (269)
T PRK06127 42 ALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQ 77 (269)
T ss_pred HHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHH
Confidence 34445555666777888777752 4567888874
No 238
>KOG2997|consensus
Probab=20.52 E-value=2e+02 Score=21.22 Aligned_cols=83 Identities=12% Similarity=0.033 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEEeeCCCH
Q psy12190 8 VGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYLVAKQTA 87 (105)
Q Consensus 8 ~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l~~~~s~ 87 (105)
++.++-+..+..|+...+..--++.......+-| +..+++....-.|..+.|+-||.-=.+......++-+...|+=
T Consensus 238 ~SsdEP~dvVk~~s~~Nt~~~s~~~g~y~ls~~d---v~~al~~~~~~~ps~~~~~r~~~~~v~~~s~tfl~~l~l~~~g 314 (366)
T KOG2997|consen 238 TSSDEPQDVVKRLSTRNTRRDSILLGHYRLSQSD---VFAALTKSKERTPSDYKYRRGRRVPVQEASQTFLVELQLCGSG 314 (366)
T ss_pred eCCcChHHHHHhhhhccCcchhhhcccccccCCc---hhhhhccCcccCchhhhhhcccccccccccceeEEEEEEeccc
Confidence 4566777788888754332221111111111112 3344555555577888888888877777777888888887776
Q ss_pred HHHHHH
Q psy12190 88 DDYLWP 93 (105)
Q Consensus 88 d~~i~~ 93 (105)
++++-+
T Consensus 315 ~rr~~~ 320 (366)
T KOG2997|consen 315 HRRFNK 320 (366)
T ss_pred chhhhh
Confidence 665443
No 239
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=20.29 E-value=50 Score=21.43 Aligned_cols=31 Identities=26% Similarity=0.160 Sum_probs=21.5
Q ss_pred ccccCeeEEecCCCCcChHh---HHHHhhhccCC
Q psy12190 42 LTAANLVVFAELFWNPGILT---QAEDRAHRIGQ 72 (105)
Q Consensus 42 l~~~~~vi~~~~~wn~~~~~---Q~~gR~~R~Gq 72 (105)
|..|++||+.-|-|+.+... +-+.|+.+.|.
T Consensus 76 l~~AD~iV~~~Pl~~~~~Pa~lK~~iD~v~~~g~ 109 (199)
T PF02525_consen 76 LLWADHIVFAFPLYWFSMPAQLKGWIDRVFTPGF 109 (199)
T ss_dssp HHHSSEEEEEEEEBTTBC-HHHHHHHHHHSHTTT
T ss_pred HHHcCcceEeccceecccChhHHHHHHHhCcCCe
Confidence 55899999999999876665 45556644443
No 240
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=20.27 E-value=1.7e+02 Score=20.00 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=23.3
Q ss_pred CCCHHHHH---HHHHHhccCCCeeEEEEecc---cceecccccc
Q psy12190 7 SVGSEERK---SVVDQFQYEDKFRVAVLSIT---AANSGITLTA 44 (105)
Q Consensus 7 ~~~~~~r~---~~~~~F~~~~~~~vll~s~~---~~~~Gl~l~~ 44 (105)
.++.+-.. ..++....+++++++|++.. ..+.|.||..
T Consensus 25 al~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~ 68 (261)
T PRK03580 25 AIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKA 68 (261)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHH
Confidence 34444333 44455555777888777642 4678888874
No 241
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=20.17 E-value=3.2e+02 Score=19.13 Aligned_cols=88 Identities=10% Similarity=0.016 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHhcc--CCCeeEEEEecccceecccc------cccCeeEEecCCCCcChHhH---HHHhhhccCCCCeE
Q psy12190 8 VGSEERKSVVDQFQY--EDKFRVAVLSITAANSGITL------TAANLVVFAELFWNPGILTQ---AEDRAHRIGQQDSV 76 (105)
Q Consensus 8 ~~~~~r~~~~~~F~~--~~~~~vll~s~~~~~~Gl~l------~~~~~vi~~~~~wn~~~~~Q---~~gR~~R~Gq~~~v 76 (105)
++.+||.++++...+ .+...|+........+.+.+ ..++.+..+.|.|.+...+. ....+... ..-++
T Consensus 55 Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a-~~~pv 133 (296)
T TIGR03249 55 LTPAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCES-TDLGV 133 (296)
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCccHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhc-cCCCE
Confidence 788999999987754 34444433221111111111 24577777777776544332 22233222 23688
Q ss_pred EEEEEeeCCCHHHHHHHHHHh
Q psy12190 77 LIQYLVAKQTADDYLWPLVMT 97 (105)
Q Consensus 77 ~v~~l~~~~s~d~~i~~~~~~ 97 (105)
.+|. .+..++....+..+.+
T Consensus 134 ilYn-~~g~~l~~~~~~~La~ 153 (296)
T TIGR03249 134 IVYQ-RDNAVLNADTLERLAD 153 (296)
T ss_pred EEEe-CCCCCCCHHHHHHHHh
Confidence 8888 2322455556655543
No 242
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=20.08 E-value=2.1e+02 Score=17.11 Aligned_cols=30 Identities=7% Similarity=0.231 Sum_probs=21.8
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEe
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLS 32 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s 32 (105)
.+....+.++-.+.++.+|+++++.-+++.
T Consensus 65 ~l~~~~~~~el~~~i~~lN~D~~V~GIlvq 94 (117)
T PF00763_consen 65 ELPEDISEEELLELIEKLNEDPSVHGILVQ 94 (117)
T ss_dssp EE-TTSSHHHHHHHHHHHHH-TT-SEEEEE
T ss_pred ECCCCcCHHHHHHHHHHHhCCCCCCEEEEc
Confidence 456678888999999999988887776665
No 243
>cd07997 WGR_PARP WGR domain of poly(ADP-ribose) polymerases. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs). It has been called WGR after the most conserved central motif of the domain. The domain typically occurs together with a catalytic PARP domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain. PARPs catalyze the NAD(+)-dependent synthesis of ADP-ribose polymers and their addition to various nuclear proteins and histones. Higher eukaryotes contain several PARPs and there may be up to 17 human PARP-like proteins, with three of them (PARP-1, PARP-2, and PARP-3) containing a WGR domain. The synthesis of poly-ADP-ribose requires multiple enzymatic activities for initiation, trans-ADP-ribosylation, elongation, branching, and release of the polymer from the enzyme. Poly-ADP-ribosylation was thought to be a reversible post-translational covalent modification that serves as a regulator
Probab=20.02 E-value=80 Score=18.50 Aligned_cols=14 Identities=21% Similarity=0.117 Sum_probs=11.4
Q ss_pred hHHHHhhhccCCCC
Q psy12190 61 TQAEDRAHRIGQQD 74 (105)
Q Consensus 61 ~Q~~gR~~R~Gq~~ 74 (105)
..++||++..||.+
T Consensus 43 ~~~WGRVG~~Gq~~ 56 (102)
T cd07997 43 FTRWGRVGERGQSQ 56 (102)
T ss_pred EEEEccCCCcCcee
Confidence 47899999988775
Done!