Query psy12190
Match_columns 105
No_of_seqs 147 out of 1227
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 21:00:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12190.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12190hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z5z_A Helicase of the SNF2/RA 100.0 7E-33 2.4E-37 189.9 8.7 105 1-105 140-244 (271)
2 3mwy_W Chromo domain-containin 100.0 7.2E-30 2.5E-34 195.1 9.3 105 1-105 599-704 (800)
3 1z3i_X Similar to RAD54-like; 100.0 1.7E-29 5.8E-34 189.5 10.9 105 1-105 443-548 (644)
4 1z63_A Helicase of the SNF2/RA 100.0 7.3E-29 2.5E-33 180.3 8.8 104 2-105 370-473 (500)
5 1wp9_A ATP-dependent RNA helic 99.9 1.3E-22 4.3E-27 144.4 4.3 98 2-104 389-494 (494)
6 3dmq_A RNA polymerase-associat 99.9 1.1E-21 3.7E-26 152.7 9.0 102 2-104 532-634 (968)
7 2fwr_A DNA repair protein RAD2 99.8 7E-21 2.4E-25 137.5 5.2 98 3-102 373-471 (472)
8 2hjv_A ATP-dependent RNA helic 99.8 6.9E-19 2.4E-23 111.9 6.0 90 2-97 63-152 (163)
9 2jgn_A DBX, DDX3, ATP-dependen 99.7 3.1E-18 1E-22 111.2 5.3 93 2-98 74-168 (185)
10 1t5i_A C_terminal domain of A 99.7 1.2E-17 4.2E-22 107.1 8.0 92 2-98 59-150 (172)
11 4a2p_A RIG-I, retinoic acid in 99.7 8.1E-19 2.8E-23 127.9 2.6 93 3-101 431-523 (556)
12 2p6n_A ATP-dependent RNA helic 99.7 8E-18 2.7E-22 109.8 5.6 93 2-98 82-177 (191)
13 3tbk_A RIG-I helicase domain; 99.7 2.4E-18 8.3E-23 125.1 2.3 84 2-90 429-512 (555)
14 3hgt_A HDA1 complex subunit 3; 99.7 1.9E-17 6.5E-22 115.6 6.5 89 1-96 152-248 (328)
15 1fuk_A Eukaryotic initiation f 99.7 3.3E-17 1.1E-21 104.2 6.2 82 2-87 58-139 (165)
16 4a2q_A RIG-I, retinoic acid in 99.7 6.3E-18 2.1E-22 129.2 2.9 93 3-101 672-764 (797)
17 2z0m_A 337AA long hypothetical 99.7 1.9E-17 6.3E-22 113.9 4.6 92 2-96 244-335 (337)
18 2yjt_D ATP-dependent RNA helic 99.5 2.9E-18 9.8E-23 109.7 0.0 76 2-79 58-133 (170)
19 2rb4_A ATP-dependent RNA helic 99.7 2.4E-16 8.3E-21 101.0 7.9 91 2-98 62-158 (175)
20 4a2w_A RIG-I, retinoic acid in 99.7 2.8E-17 9.6E-22 127.6 3.5 91 3-99 672-762 (936)
21 3eaq_A Heat resistant RNA depe 99.7 1.3E-16 4.3E-21 105.4 6.0 80 2-85 59-138 (212)
22 2oca_A DAR protein, ATP-depend 99.6 2.3E-16 7.7E-21 114.8 6.7 84 2-86 375-459 (510)
23 1hv8_A Putative ATP-dependent 99.6 7.2E-16 2.5E-20 106.9 5.7 80 2-85 266-345 (367)
24 1xti_A Probable ATP-dependent 99.6 3.2E-15 1.1E-19 104.8 8.4 93 2-99 278-370 (391)
25 2db3_A ATP-dependent RNA helic 99.6 5.2E-15 1.8E-19 106.3 7.7 93 2-98 328-423 (434)
26 3i32_A Heat resistant RNA depe 99.6 2.9E-15 1E-19 103.8 5.8 80 2-85 56-135 (300)
27 2i4i_A ATP-dependent RNA helic 99.5 4.8E-15 1.6E-19 104.8 5.6 93 2-98 304-398 (417)
28 1s2m_A Putative ATP-dependent 99.5 4.5E-15 1.6E-19 104.5 5.4 91 2-98 286-376 (400)
29 2j0s_A ATP-dependent RNA helic 99.5 7.7E-15 2.6E-19 103.7 6.3 89 2-96 304-392 (410)
30 4gl2_A Interferon-induced heli 99.5 6.4E-15 2.2E-19 110.5 5.9 79 2-86 434-520 (699)
31 3pey_A ATP-dependent RNA helic 99.5 1.6E-14 5.3E-19 101.0 6.8 91 2-97 271-367 (395)
32 3fht_A ATP-dependent RNA helic 99.5 9.1E-14 3.1E-18 97.9 9.1 93 2-99 294-392 (412)
33 3eiq_A Eukaryotic initiation f 99.5 1.6E-14 5.5E-19 101.9 4.6 89 2-96 308-396 (414)
34 3i5x_A ATP-dependent RNA helic 99.5 1.4E-13 4.7E-18 101.2 9.3 90 2-97 370-459 (563)
35 2ykg_A Probable ATP-dependent 99.5 7.2E-15 2.5E-19 110.2 2.2 79 5-88 441-519 (696)
36 1fuu_A Yeast initiation factor 99.5 3.8E-15 1.3E-19 104.4 0.0 76 2-79 287-362 (394)
37 3sqw_A ATP-dependent RNA helic 99.5 1.9E-13 6.6E-18 101.1 9.1 90 2-97 319-408 (579)
38 1oyw_A RECQ helicase, ATP-depe 99.5 1.2E-13 4.1E-18 101.6 7.0 76 2-79 264-339 (523)
39 3h1t_A Type I site-specific re 99.4 6.3E-14 2.2E-18 103.8 4.8 79 3-82 476-558 (590)
40 2v1x_A ATP-dependent DNA helic 99.4 2.6E-13 8.7E-18 101.3 6.6 76 2-79 295-370 (591)
41 2xgj_A ATP-dependent RNA helic 99.4 1.1E-12 3.7E-17 102.8 7.7 92 3-96 411-510 (1010)
42 3l9o_A ATP-dependent RNA helic 99.3 7.7E-12 2.6E-16 98.8 7.7 95 2-98 508-610 (1108)
43 3oiy_A Reverse gyrase helicase 99.3 1.1E-11 3.7E-16 88.0 7.3 65 17-82 290-362 (414)
44 2zj8_A DNA helicase, putative 99.3 9.6E-12 3.3E-16 94.2 7.3 86 2-89 298-391 (720)
45 3fmp_B ATP-dependent RNA helic 99.3 4.5E-13 1.5E-17 96.9 0.0 73 3-77 362-440 (479)
46 2va8_A SSO2462, SKI2-type heli 99.2 1E-11 3.5E-16 93.8 6.4 83 2-86 316-409 (715)
47 2p6r_A Afuhel308 helicase; pro 99.2 1.3E-11 4.5E-16 93.1 6.5 85 3-89 301-392 (702)
48 3rc3_A ATP-dependent RNA helic 99.2 2.1E-11 7.1E-16 92.3 6.8 81 2-84 348-444 (677)
49 2eyq_A TRCF, transcription-rep 99.2 2E-11 7E-16 96.7 6.0 79 2-84 842-921 (1151)
50 3fho_A ATP-dependent RNA helic 99.2 2.3E-12 7.9E-17 94.3 0.1 76 2-79 385-466 (508)
51 1gm5_A RECG; helicase, replica 99.1 9.6E-12 3.3E-16 95.4 2.0 75 3-79 618-693 (780)
52 4a4z_A Antiviral helicase SKI2 99.1 9.3E-11 3.2E-15 91.9 6.9 91 2-95 403-502 (997)
53 1c4o_A DNA nucleotide excision 99.1 2.3E-10 7.9E-15 86.4 6.7 79 3-86 468-551 (664)
54 2d7d_A Uvrabc system protein B 99.0 3.3E-10 1.1E-14 85.5 6.5 79 3-86 474-557 (661)
55 2xau_A PRE-mRNA-splicing facto 98.8 4.1E-10 1.4E-14 86.3 0.8 81 2-86 342-444 (773)
56 1yks_A Genome polyprotein [con 98.8 5.2E-10 1.8E-14 80.7 1.3 63 11-76 210-292 (440)
57 1gku_B Reverse gyrase, TOP-RG; 98.8 2.7E-09 9.2E-14 84.1 4.7 46 3-54 303-352 (1054)
58 2wv9_A Flavivirin protease NS2 98.8 2.6E-09 8.8E-14 80.9 3.0 69 3-78 439-528 (673)
59 2jlq_A Serine protease subunit 98.8 3.8E-09 1.3E-13 76.3 3.2 62 12-76 222-304 (451)
60 2whx_A Serine protease/ntpase/ 98.7 5.4E-09 1.9E-13 78.4 3.1 69 11-83 388-476 (618)
61 2z83_A Helicase/nucleoside tri 98.7 3.4E-09 1.1E-13 76.8 1.6 70 11-84 223-312 (459)
62 2v6i_A RNA helicase; membrane, 98.7 5.6E-09 1.9E-13 75.1 2.3 70 3-79 200-287 (431)
63 4ddu_A Reverse gyrase; topoiso 98.6 2.8E-08 9.6E-13 78.7 4.7 41 13-55 344-388 (1104)
64 1tf5_A Preprotein translocase 98.6 4.4E-08 1.5E-12 75.6 4.2 71 2-76 460-538 (844)
65 4f92_B U5 small nuclear ribonu 98.5 1.6E-07 5.4E-12 77.2 6.2 81 3-85 1218-1308(1724)
66 4f92_B U5 small nuclear ribonu 98.5 1.1E-07 3.7E-12 78.1 4.9 84 3-88 383-476 (1724)
67 3jux_A Protein translocase sub 98.5 2.7E-07 9.2E-12 70.7 5.9 72 3-78 503-582 (822)
68 3o8b_A HCV NS3 protease/helica 98.4 1.8E-07 6.2E-12 70.8 3.5 71 2-86 424-515 (666)
69 2w00_A HSDR, R.ECOR124I; ATP-b 98.3 1.9E-06 6.6E-11 68.0 7.8 69 12-83 637-707 (1038)
70 2fsf_A Preprotein translocase 98.3 4.9E-07 1.7E-11 69.8 4.4 72 3-78 470-578 (853)
71 1nkt_A Preprotein translocase 98.2 1.6E-06 5.6E-11 67.3 5.3 72 2-77 488-611 (922)
72 2vl7_A XPD; helicase, unknown 97.0 0.0019 6.5E-08 47.6 6.7 64 11-76 416-514 (540)
73 4a15_A XPD helicase, ATP-depen 95.7 0.04 1.4E-06 41.4 7.3 68 9-78 480-579 (620)
74 2ipc_A Preprotein translocase 83.5 1.3 4.5E-05 35.2 4.2 34 47-80 662-695 (997)
75 3crv_A XPD/RAD3 related DNA he 79.5 4.1 0.00014 29.9 5.5 43 13-56 426-474 (551)
76 2oo3_A Protein involved in cat 63.9 20 0.00068 24.4 5.6 84 10-96 123-214 (283)
77 1hmj_A RPB5, protein (subunit 47.0 22 0.00077 19.4 3.0 41 7-48 14-55 (78)
78 1gm5_A RECG; helicase, replica 46.8 24 0.00081 27.4 4.2 50 3-53 450-499 (780)
79 4ayb_H DNA-directed RNA polyme 39.7 24 0.00084 19.5 2.5 63 5-85 20-84 (84)
80 1jr5_A 10 kDa anti-sigma facto 37.9 11 0.00038 21.2 0.8 18 6-23 59-76 (90)
81 1xrs_A D-lysine 5,6-aminomutas 36.2 57 0.0019 24.0 4.5 36 62-97 137-172 (516)
82 4hs4_A Chromate reductase; tri 34.9 54 0.0018 20.6 3.9 39 42-80 71-116 (199)
83 1t5b_A Acyl carrier protein ph 29.2 85 0.0029 19.0 4.1 31 41-71 83-116 (201)
84 4dpp_A DHDPS 2, dihydrodipicol 28.9 1.4E+02 0.0049 20.8 5.6 86 8-96 109-208 (360)
85 3i42_A Response regulator rece 28.1 53 0.0018 17.9 2.8 17 52-68 104-120 (127)
86 3svl_A Protein YIEF; E. coli C 27.5 89 0.0031 19.4 4.0 38 42-79 70-114 (193)
87 3h8k_B Autocrine motility fact 26.4 41 0.0014 14.6 1.6 17 86-102 2-18 (28)
88 2amj_A Modulator of drug activ 26.1 26 0.0009 22.1 1.3 29 41-69 67-98 (204)
89 3p0r_A Azoreductase; structura 23.9 37 0.0013 21.4 1.7 30 42-71 90-122 (211)
90 4eml_A Naphthoate synthase; 1, 23.6 76 0.0026 21.0 3.2 33 13-45 42-82 (275)
91 2hpv_A FMN-dependent NADH-azor 23.1 39 0.0013 20.9 1.7 30 42-71 92-124 (208)
92 2eoc_A Poly [ADP-ribose] polym 22.7 52 0.0018 19.3 2.1 39 50-94 54-92 (124)
93 3op0_A Signal transduction pro 20.1 2.3E+02 0.0077 19.7 5.0 67 4-71 231-298 (323)
94 1t0i_A YLR011WP; FMN binding p 20.1 89 0.003 18.9 2.9 39 41-79 81-122 (191)
95 1ef8_A Methylmalonyl COA decar 20.0 1.1E+02 0.0039 19.8 3.5 31 13-44 36-70 (261)
No 1
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.98 E-value=7e-33 Score=189.94 Aligned_cols=105 Identities=31% Similarity=0.492 Sum_probs=85.5
Q ss_pred CEEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEE
Q psy12190 1 YIRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQY 80 (105)
Q Consensus 1 ~~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~ 80 (105)
+..++|+++.++|++++++|++++++.++|++++++|+|+||+.|++||++|+||||..+.||+||+||+||+++|.||+
T Consensus 140 ~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~ 219 (271)
T 1z5z_A 140 VPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHK 219 (271)
T ss_dssp CCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEE
T ss_pred EEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEE
Confidence 45799999999999999999988677888999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCHHHHHHHHHHhhhhcCCCC
Q psy12190 81 LVAKQTADDYLWPLVMTKLDVPSPI 105 (105)
Q Consensus 81 l~~~~s~d~~i~~~~~~K~~~~~~i 105 (105)
+++++|+||++++++..|..+++.+
T Consensus 220 li~~~TiEe~i~~~~~~K~~l~~~~ 244 (271)
T 1z5z_A 220 LISVGTLEEKIDQLLAFKRSLFKDI 244 (271)
T ss_dssp EEETTSHHHHHHHHHHHCHHHHTTG
T ss_pred EeeCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887653
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.2e-30 Score=195.12 Aligned_cols=105 Identities=36% Similarity=0.502 Sum_probs=96.9
Q ss_pred CEEEECCCCHHHHHHHHHHhccCC-CeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEE
Q psy12190 1 YIRIDGSVGSEERKSVVDQFQYED-KFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQ 79 (105)
Q Consensus 1 ~~~~~g~~~~~~r~~~~~~F~~~~-~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~ 79 (105)
|++++|+++.++|++++++|+.++ ...++|+|++++|+|+||+.|++||++|++|||..+.||+||+||+||+++|.||
T Consensus 599 ~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 678 (800)
T 3mwy_W 599 FQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVY 678 (800)
T ss_dssp CEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEE
T ss_pred EEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEE
Confidence 578999999999999999999754 3447899999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCHHHHHHHHHHhhhhcCCCC
Q psy12190 80 YLVAKQTADDYLWPLVMTKLDVPSPI 105 (105)
Q Consensus 80 ~l~~~~s~d~~i~~~~~~K~~~~~~i 105 (105)
+|++++|+|++|++++..|..+.+.+
T Consensus 679 rlv~~~TiEe~i~~~~~~K~~l~~~v 704 (800)
T 3mwy_W 679 RLVSKDTVEEEVLERARKKMILEYAI 704 (800)
T ss_dssp EEEETTSHHHHHHHHHHHHTTSCC--
T ss_pred EEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877643
No 3
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=1.7e-29 Score=189.48 Aligned_cols=105 Identities=28% Similarity=0.415 Sum_probs=98.3
Q ss_pred CEEEECCCCHHHHHHHHHHhccCCC-eeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEE
Q psy12190 1 YIRIDGSVGSEERKSVVDQFQYEDK-FRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQ 79 (105)
Q Consensus 1 ~~~~~g~~~~~~r~~~~~~F~~~~~-~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~ 79 (105)
|++++|+++.++|++++++|++++. ..++|++++++|+|+||+.|++||++|++|||..+.|++||+||+||+++|.||
T Consensus 443 ~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~ 522 (644)
T 1z3i_X 443 YVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIY 522 (644)
T ss_dssp EEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEE
T ss_pred EEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEE
Confidence 4689999999999999999997654 347889999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCHHHHHHHHHHhhhhcCCCC
Q psy12190 80 YLVAKQTADDYLWPLVMTKLDVPSPI 105 (105)
Q Consensus 80 ~l~~~~s~d~~i~~~~~~K~~~~~~i 105 (105)
++++++|+||++++++..|..+++.+
T Consensus 523 ~lv~~~tiEe~i~~~~~~K~~l~~~v 548 (644)
T 1z3i_X 523 RLLSTGTIEEKILQRQAHKKALSSCV 548 (644)
T ss_dssp EEEETTSHHHHHHHHHHHHHHTSCCC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988754
No 4
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.95 E-value=7.3e-29 Score=180.29 Aligned_cols=104 Identities=32% Similarity=0.501 Sum_probs=94.5
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..++|+++.++|++++++|++++...++|++++++++|+||+.|++||++|++|||..+.|++||++|+||+++|.||++
T Consensus 370 ~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~l 449 (500)
T 1z63_A 370 PFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKL 449 (500)
T ss_dssp CEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEE
T ss_pred EEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEE
Confidence 57899999999999999999876677788999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCHHHHHHHHHHhhhhcCCCC
Q psy12190 82 VAKQTADDYLWPLVMTKLDVPSPI 105 (105)
Q Consensus 82 ~~~~s~d~~i~~~~~~K~~~~~~i 105 (105)
++++|+|+++++++..|..+++.+
T Consensus 450 v~~~tiee~i~~~~~~K~~l~~~~ 473 (500)
T 1z63_A 450 ISVGTLEEKIDQLLAFKRSLFKDI 473 (500)
T ss_dssp EETTSHHHHTHHHHTTCSSSSSSG
T ss_pred EeCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888753
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.86 E-value=1.3e-22 Score=144.40 Aligned_cols=98 Identities=23% Similarity=0.285 Sum_probs=80.1
Q ss_pred EEEEC--------CCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCC
Q psy12190 2 IRIDG--------SVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQ 73 (105)
Q Consensus 2 ~~~~g--------~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~ 73 (105)
..++| +++.++|+++++.|+++. ..+ |++++++++|+|++.+++||+++++||+..+.|++||++|.|+
T Consensus 389 ~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~-~~v-Lv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~- 465 (494)
T 1wp9_A 389 KRFVGQASKENDRGLSQREQKLILDEFARGE-FNV-LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP- 465 (494)
T ss_dssp EEECCSSCC-------CCHHHHHHHHHHHTS-CSE-EEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-
T ss_pred EEEeccccccccccCCHHHHHHHHHHHhcCC-ceE-EEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-
Confidence 46788 899999999999999655 666 5556999999999999999999999999999999999999998
Q ss_pred CeEEEEEEeeCCCHHHHHHHHHHhhhhcCCC
Q psy12190 74 DSVLIQYLVAKQTADDYLWPLVMTKLDVPSP 104 (105)
Q Consensus 74 ~~v~v~~l~~~~s~d~~i~~~~~~K~~~~~~ 104 (105)
+.+|.+++++|+|++++..+..|..++++
T Consensus 466 --g~~~~l~~~~t~ee~~~~~~~~k~~~~~~ 494 (494)
T 1wp9_A 466 --GRVIILMAKGTRDEAYYWSSRQKEKIMQE 494 (494)
T ss_dssp --SEEEEEEETTSHHHHHHHHCC--------
T ss_pred --ceEEEEEecCCHHHHHHHHHHHHHHHhcC
Confidence 89999999999999999999999888753
No 6
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.86 E-value=1.1e-21 Score=152.65 Aligned_cols=102 Identities=25% Similarity=0.274 Sum_probs=94.0
Q ss_pred EEEECCCCHHHHHHHHHHhccCC-CeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYED-KFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQY 80 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~-~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~ 80 (105)
..+||+++.++|.++++.|++++ .+.+| ++++++++|+|++.+++||++++|||+..+.|++||++|.||++.|.+|+
T Consensus 532 ~~lhG~~~~~~R~~~l~~F~~g~~~~~vL-vaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~ 610 (968)
T 3dmq_A 532 AVFHEGMSIIERDRAAAWFAEEDTGAQVL-LCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHV 610 (968)
T ss_dssp EEECTTSCTTHHHHHHHHHHSTTSSCEEE-ECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEE
T ss_pred EEEeCCCCHHHHHHHHHHHhCCCCcccEE-EecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEE
Confidence 57899999999999999999765 46665 55699999999999999999999999999999999999999999999999
Q ss_pred EeeCCCHHHHHHHHHHhhhhcCCC
Q psy12190 81 LVAKQTADDYLWPLVMTKLDVPSP 104 (105)
Q Consensus 81 l~~~~s~d~~i~~~~~~K~~~~~~ 104 (105)
++.++|+|+++++.+..|.++++.
T Consensus 611 ~~~~~t~ee~i~~~~~~k~~~~~~ 634 (968)
T 3dmq_A 611 PYLEKTAQSVLVRWYHEGLDAFEH 634 (968)
T ss_dssp EEETTSHHHHHHHHHHHTTCCSSS
T ss_pred ecCCChHHHHHHHHHHhCCCceec
Confidence 999999999999999999887653
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.82 E-value=7e-21 Score=137.48 Aligned_cols=98 Identities=18% Similarity=0.186 Sum_probs=76.7
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCC-CeEEEEEE
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQ-DSVLIQYL 81 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~-~~v~v~~l 81 (105)
.++|+++.++|+++++.|++ +...+| ++++++++|+|++.++.||+++++||+..+.|++||++|.|+. +.+.+|.+
T Consensus 373 ~~~g~~~~~~R~~~~~~F~~-g~~~vL-v~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~l 450 (472)
T 2fwr_A 373 AITHRTSREEREEILEGFRT-GRFRAI-VSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYEL 450 (472)
T ss_dssp BCCSSSCSHHHHTHHHHHHH-SSCSBC-BCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEE
T ss_pred eeeCCCCHHHHHHHHHHHhC-CCCCEE-EEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEE
Confidence 46899999999999999996 446664 5669999999999999999999999999999999999999998 89999999
Q ss_pred eeCCCHHHHHHHHHHhhhhcC
Q psy12190 82 VAKQTADDYLWPLVMTKLDVP 102 (105)
Q Consensus 82 ~~~~s~d~~i~~~~~~K~~~~ 102 (105)
++++|+|+++.++.+.|.+.+
T Consensus 451 v~~~t~ee~~~~~r~~~~~~a 471 (472)
T 2fwr_A 451 ISRGTGEVNTARRRKNAAKGA 471 (472)
T ss_dssp EECSCC---------------
T ss_pred EeCCCchHHHHHHHHHhhccC
Confidence 999999999999998887654
No 8
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.76 E-value=6.9e-19 Score=111.88 Aligned_cols=90 Identities=19% Similarity=0.292 Sum_probs=72.9
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..+||+++..+|..+++.|+++ ...+| ++++++++|+|++.+++||++++||++..+.|++||++|.|+...+ +.+
T Consensus 63 ~~~hg~~~~~~r~~~~~~f~~g-~~~vl-v~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~--~~~ 138 (163)
T 2hjv_A 63 DKIHGGMIQEDRFDVMNEFKRG-EYRYL-VATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKA--ISF 138 (163)
T ss_dssp EEECTTSCHHHHHHHHHHHHTT-SCSEE-EECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEE--EEE
T ss_pred EEEeCCCCHHHHHHHHHHHHcC-CCeEE-EECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceE--EEE
Confidence 4689999999999999999954 46675 5559999999999999999999999999999999999999977554 444
Q ss_pred eeCCCHHHHHHHHHHh
Q psy12190 82 VAKQTADDYLWPLVMT 97 (105)
Q Consensus 82 ~~~~s~d~~i~~~~~~ 97 (105)
+... |...++.+++
T Consensus 139 ~~~~--~~~~~~~i~~ 152 (163)
T 2hjv_A 139 VTAF--EKRFLADIEE 152 (163)
T ss_dssp ECGG--GHHHHHHHHH
T ss_pred ecHH--HHHHHHHHHH
Confidence 5443 4444444444
No 9
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.73 E-value=3.1e-18 Score=111.18 Aligned_cols=93 Identities=17% Similarity=0.250 Sum_probs=60.8
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..++|+++.++|..+++.|+.+ ...+|+ ++++++.|+|++.++.||++++||++..+.|++||++|.|+...+ +.+
T Consensus 74 ~~lhg~~~~~~r~~~~~~f~~g-~~~vLv-aT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~--~~~ 149 (185)
T 2jgn_A 74 TSIHGDRSQRDREEALHQFRSG-KSPILV-ATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA--TSF 149 (185)
T ss_dssp EEEC--------CHHHHHHHHT-SSSEEE-EEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEE--EEE
T ss_pred EEEeCCCCHHHHHHHHHHHHcC-CCeEEE-EcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEE--EEE
Confidence 4689999999999999999954 466755 559999999999999999999999999999999999999976544 444
Q ss_pred eeCC--CHHHHHHHHHHhh
Q psy12190 82 VAKQ--TADDYLWPLVMTK 98 (105)
Q Consensus 82 ~~~~--s~d~~i~~~~~~K 98 (105)
+.+. ..-..+.+.+..+
T Consensus 150 ~~~~~~~~~~~l~~~l~~~ 168 (185)
T 2jgn_A 150 FNERNINITKDLLDLLVEA 168 (185)
T ss_dssp ECGGGGGGHHHHHHHHHHT
T ss_pred EchhhHHHHHHHHHHHHhc
Confidence 5433 3445566555544
No 10
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.73 E-value=1.2e-17 Score=107.09 Aligned_cols=92 Identities=21% Similarity=0.248 Sum_probs=73.4
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..+||+++.++|..+++.|++ +...+|+ ++++++.|+|++.+++||++++||++..+.|++||++|.|+...+. .+
T Consensus 59 ~~~hg~~~~~~r~~~~~~f~~-g~~~vLv-aT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~--~~ 134 (172)
T 1t5i_A 59 IAIHRGMPQEERLSRYQQFKD-FQRRILV-ATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAI--TF 134 (172)
T ss_dssp EEECTTSCHHHHHHHHHHHHT-TSCSEEE-ESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEE--EE
T ss_pred EEEECCCCHHHHHHHHHHHHC-CCCcEEE-ECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEE--EE
Confidence 468999999999999999995 4466755 5599999999999999999999999999999999999999865543 44
Q ss_pred eeCCCHHHHHHHHHHhh
Q psy12190 82 VAKQTADDYLWPLVMTK 98 (105)
Q Consensus 82 ~~~~s~d~~i~~~~~~K 98 (105)
+... -|...++.++..
T Consensus 135 ~~~~-~~~~~~~~l~~~ 150 (172)
T 1t5i_A 135 VSDE-NDAKILNDVQDR 150 (172)
T ss_dssp ECSH-HHHHHHHHHHHH
T ss_pred EcCh-hHHHHHHHHHHH
Confidence 4432 244555555443
No 11
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.73 E-value=8.1e-19 Score=127.88 Aligned_cols=93 Identities=20% Similarity=0.226 Sum_probs=41.4
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEEe
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYLV 82 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l~ 82 (105)
.+||+++.++|.+++++|++++...|| ++++++++|+|++.+++||++|+|||+..+.|++|| |+.+++.+|.++
T Consensus 431 ~~~~~~~~~~R~~~~~~F~~~g~~~vL-vaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~ 505 (556)
T 4a2p_A 431 DQTTGMTLPSQKGVLDAFKTSKDNRLL-IATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVT 505 (556)
T ss_dssp -----------------------CCEE-EEEC-----------CEEEEETCCSCHHHHHHC------------CCEEEEE
T ss_pred ccccccCHHHHHHHHHHhcccCceEEE-EEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCceEEEEE
Confidence 457889999999999999975667775 555999999999999999999999999999999999 455788899999
Q ss_pred eCCCHHHHHHHHHHhhhhc
Q psy12190 83 AKQTADDYLWPLVMTKLDV 101 (105)
Q Consensus 83 ~~~s~d~~i~~~~~~K~~~ 101 (105)
++++.+++ +.....|..+
T Consensus 506 ~~~~~~~~-~~~~~~k~~~ 523 (556)
T 4a2p_A 506 SKTEVVEN-EKCNRYKEEM 523 (556)
T ss_dssp SCHHHHHH-HHHHHHHHHH
T ss_pred eCcchHHH-HHhhHHHHHH
Confidence 99999877 4444444443
No 12
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.71 E-value=8e-18 Score=109.80 Aligned_cols=93 Identities=18% Similarity=0.211 Sum_probs=71.0
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..++|+++.++|.++++.|+++ ...+| +++++++.|+|++.+++||++++||++..+.|++||++|.|++..+ +.|
T Consensus 82 ~~lhg~~~~~~R~~~l~~F~~g-~~~vL-vaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~--i~l 157 (191)
T 2p6n_A 82 VAIHGGKDQEERTKAIEAFREG-KKDVL-VATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIA--TTF 157 (191)
T ss_dssp EEECTTSCHHHHHHHHHHHHHT-SCSEE-EECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEE--EEE
T ss_pred EEEeCCCCHHHHHHHHHHHhcC-CCEEE-EEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEE--EEE
Confidence 4689999999999999999954 46665 5559999999999999999999999999999999999999987654 444
Q ss_pred eeCC---CHHHHHHHHHHhh
Q psy12190 82 VAKQ---TADDYLWPLVMTK 98 (105)
Q Consensus 82 ~~~~---s~d~~i~~~~~~K 98 (105)
+... .....+.+.+..+
T Consensus 158 ~~~~~~~~~~~~l~~~l~~~ 177 (191)
T 2p6n_A 158 INKACDESVLMDLKALLLEA 177 (191)
T ss_dssp ECTTSCHHHHHHHHHHHHHT
T ss_pred EcCchhHHHHHHHHHHHHHc
Confidence 5543 2334444444433
No 13
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.70 E-value=2.4e-18 Score=125.08 Aligned_cols=84 Identities=18% Similarity=0.241 Sum_probs=54.7
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..+||+++.++|.+++++|++++...|| ++++++++|+|++.+++||++|+|||+..+.|++|| |+.+++.+|.+
T Consensus 429 ~~~~~~~~~~~R~~~~~~F~~~g~~~vL-vaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l 503 (555)
T 3tbk_A 429 TNRATGMTLPAQKCVLEAFRASGDNNIL-IATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLL 503 (555)
T ss_dssp -----------------------CCSEE-EECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEE
T ss_pred cccccccCHHHHHHHHHHHhcCCCeeEE-EEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEE
Confidence 3567899999999999999975667775 466999999999999999999999999999999999 66689999999
Q ss_pred eeCCCHHHH
Q psy12190 82 VAKQTADDY 90 (105)
Q Consensus 82 ~~~~s~d~~ 90 (105)
+++++.++.
T Consensus 504 ~~~~~~~~~ 512 (555)
T 3tbk_A 504 TSSADVIEK 512 (555)
T ss_dssp ESCHHHHHH
T ss_pred EcCCCHHHH
Confidence 999988755
No 14
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.70 E-value=1.9e-17 Score=115.65 Aligned_cols=89 Identities=15% Similarity=0.032 Sum_probs=64.3
Q ss_pred CEEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceeccc-----ccccCeeEEecCCCCcChH-hHHHHhhhcc--CC
Q psy12190 1 YIRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGIT-----LTAANLVVFAELFWNPGIL-TQAEDRAHRI--GQ 72 (105)
Q Consensus 1 ~~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~-----l~~~~~vi~~~~~wn~~~~-~Q~~gR~~R~--Gq 72 (105)
|+|++|+....+ ++. .+.++.+.|++ .+|+.|+| +..|+.||.+|++|||... .|++.|+||+ ||
T Consensus 152 y~RlDG~~~~~~-~k~-----~~~~~~i~Llt-sag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq 224 (328)
T 3hgt_A 152 IKRYDGHSIKSA-AAA-----NDFSCTVHLFS-SEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGL 224 (328)
T ss_dssp EEESSSCCC-------------CCSEEEEEEE-SSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC------
T ss_pred eEeCCCCchhhh-hhc-----ccCCceEEEEE-CCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCC
Confidence 689999965432 221 13446666664 67777776 8999999999999999998 8999999999 68
Q ss_pred CCeEEEEEEeeCCCHHHHHHHHHH
Q psy12190 73 QDSVLIQYLVAKQTADDYLWPLVM 96 (105)
Q Consensus 73 ~~~v~v~~l~~~~s~d~~i~~~~~ 96 (105)
+++|.||||++.+|+|+.++..-+
T Consensus 225 ~k~v~V~RLvt~~TiEh~~l~~~~ 248 (328)
T 3hgt_A 225 ERYAPIVRLVAINSIDHCRLFFGK 248 (328)
T ss_dssp ---CCEEEEEETTSHHHHHHHHHH
T ss_pred CCcceEEEEeCCCCHHHHHHHccC
Confidence 999999999999999999998744
No 15
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.69 E-value=3.3e-17 Score=104.19 Aligned_cols=82 Identities=20% Similarity=0.281 Sum_probs=65.7
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..++|+++.++|..+++.|++ +...+|+ ++++++.|+|++.+++||++++||++..+.|++||++|.|+... ++.+
T Consensus 58 ~~~~~~~~~~~r~~~~~~f~~-g~~~vlv-~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~--~~~~ 133 (165)
T 1fuk_A 58 SAIYSDLPQQERDTIMKEFRS-GSSRILI-STDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGV--AINF 133 (165)
T ss_dssp EEECTTSCHHHHHHHHHHHHT-TSCSEEE-EEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CE--EEEE
T ss_pred EEEECCCCHHHHHHHHHHHHc-CCCEEEE-EcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEE
Confidence 468999999999999999995 4466755 45999999999999999999999999999999999999997654 4556
Q ss_pred eeCCCH
Q psy12190 82 VAKQTA 87 (105)
Q Consensus 82 ~~~~s~ 87 (105)
+.+...
T Consensus 134 ~~~~~~ 139 (165)
T 1fuk_A 134 VTNEDV 139 (165)
T ss_dssp EETTTH
T ss_pred EcchHH
Confidence 666643
No 16
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.69 E-value=6.3e-18 Score=129.15 Aligned_cols=93 Identities=19% Similarity=0.197 Sum_probs=46.9
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEEe
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYLV 82 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l~ 82 (105)
.+||+++.++|.+++++|++++...+| ++++++++|+|++.+++||++|+|||+..+.|++|| + +.+++.+|.++
T Consensus 672 ~~hg~~~~~eR~~~l~~F~~~g~~~vL-VaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-G---R~~~g~~i~l~ 746 (797)
T 4a2q_A 672 DQTTGMTLPSQKGVLDAFKTSKDNRLL-IATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-G---RAAGSKCILVT 746 (797)
T ss_dssp ----------------------CCSEE-EEECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEE
T ss_pred ccCCCCCHHHHHHHHHHhhccCCceEE-EEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-C---CCCCceEEEEE
Confidence 467889999999999999975667775 555999999999999999999999999999999999 4 45888899999
Q ss_pred eCCCHHHHHHHHHHhhhhc
Q psy12190 83 AKQTADDYLWPLVMTKLDV 101 (105)
Q Consensus 83 ~~~s~d~~i~~~~~~K~~~ 101 (105)
++++++++ +.....|..+
T Consensus 747 ~~~~~ee~-~~~~~~ke~~ 764 (797)
T 4a2q_A 747 SKTEVVEN-EKCNRYKEEM 764 (797)
T ss_dssp CCHHHHHH-HHHHHHHHHH
T ss_pred eCCcHHHH-HHHHHHHHHH
Confidence 99999877 4444444443
No 17
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.68 E-value=1.9e-17 Score=113.94 Aligned_cols=92 Identities=13% Similarity=0.230 Sum_probs=75.5
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..++|+++.++|.++++.|+++ ...+ |++++++++|+|++.+++||++++||++..+.|++||++|.|+...+.+|..
T Consensus 244 ~~~~~~~~~~~r~~~~~~f~~~-~~~v-lv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 244 IELRGDLPQSVRNRNIDAFREG-EYDM-LITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp EEECTTSCHHHHHHHHHHHHTT-SCSE-EEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred hhhcCCCCHHHHHHHHHHHHcC-CCcE-EEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 4689999999999999999954 4566 4556999999999999999999999999999999999999999888777776
Q ss_pred eeCCCHHHHHHHHHH
Q psy12190 82 VAKQTADDYLWPLVM 96 (105)
Q Consensus 82 ~~~~s~d~~i~~~~~ 96 (105)
.+..+.+.+.+.+.
T Consensus 322 -~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 322 -NEYWLEKEVKKVSQ 335 (337)
T ss_dssp -SCHHHHHHHC----
T ss_pred -CcHHHHHHHHHHhc
Confidence 55556666655544
No 18
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.50 E-value=2.9e-18 Score=109.68 Aligned_cols=76 Identities=13% Similarity=0.236 Sum_probs=66.1
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQ 79 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~ 79 (105)
..+||+++.++|..+++.|++ +...+| +++++++.|+|++.+++||++++||++..+.|++||++|.|+...+.++
T Consensus 58 ~~~~g~~~~~~r~~~~~~f~~-g~~~vL-vaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~ 133 (170)
T 2yjt_D 58 CYLEGEMVQGKRNEAIKRLTE-GRVNVL-VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISL 133 (170)
Confidence 357999999999999999995 445664 5559999999999999999999999999999999999999987665443
No 19
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=101.02 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=68.3
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCC------CCcChHhHHHHhhhccCCCCe
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELF------WNPGILTQAEDRAHRIGQQDS 75 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~------wn~~~~~Q~~gR~~R~Gq~~~ 75 (105)
..+||+++..+|..+++.|++ +...+| +++++++.|+|++.+++||++++| +++..+.|++||++|.|+.
T Consensus 62 ~~~~g~~~~~~R~~~~~~f~~-g~~~vL-vaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~-- 137 (175)
T 2rb4_A 62 SLLSGELTVEQRASIIQRFRD-GKEKVL-ITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK-- 137 (175)
T ss_dssp EEECSSCCHHHHHHHHHHHHT-TSCSEE-EECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--
T ss_pred EEEeCCCCHHHHHHHHHHHHc-CCCeEE-EEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--
Confidence 468999999999999999995 446665 555999999999999999999999 6668889999999999954
Q ss_pred EEEEEEeeCCCHHHHHHHHHHhh
Q psy12190 76 VLIQYLVAKQTADDYLWPLVMTK 98 (105)
Q Consensus 76 v~v~~l~~~~s~d~~i~~~~~~K 98 (105)
..++.++..+. ...++.++++
T Consensus 138 g~~~~~~~~~~--~~~~~~i~~~ 158 (175)
T 2rb4_A 138 GLAFNMIEVDE--LPSLMKIQDH 158 (175)
T ss_dssp EEEEEEECGGG--HHHHHHHHHH
T ss_pred ceEEEEEccch--HHHHHHHHHH
Confidence 45566676654 3334444443
No 20
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.66 E-value=2.8e-17 Score=127.60 Aligned_cols=91 Identities=21% Similarity=0.210 Sum_probs=46.7
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEEe
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYLV 82 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l~ 82 (105)
.+||+++..+|.+++++|+.++...|| ++++++++|+|++.+++||++|+|||+..+.|++|| |+.+++.+|.++
T Consensus 672 ~~hg~m~~~eR~~il~~Fr~~g~~~VL-VaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li 746 (936)
T 4a2w_A 672 DQTTGMTLPSQKGVLDAFKTSKDNRLL-IATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVT 746 (936)
T ss_dssp ----------------------CCSEE-EEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEE
T ss_pred ccCCCCCHHHHHHHHHHhhccCCeeEE-EEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCCEEEEEE
Confidence 467889999999999999975667775 556999999999999999999999999999999999 555778899999
Q ss_pred eCCCHHHHHHHHHHhhh
Q psy12190 83 AKQTADDYLWPLVMTKL 99 (105)
Q Consensus 83 ~~~s~d~~i~~~~~~K~ 99 (105)
++++++++.+ ....|.
T Consensus 747 ~~~t~ee~~~-~~~~ke 762 (936)
T 4a2w_A 747 SKTEVVENEK-CNRYKE 762 (936)
T ss_dssp SCHHHHHHHH-HHHHHH
T ss_pred eCCCHHHHHH-HHHHHH
Confidence 9999988755 434443
No 21
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.66 E-value=1.3e-16 Score=105.43 Aligned_cols=80 Identities=21% Similarity=0.335 Sum_probs=66.8
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..+||+++.++|.++++.|++ +..+++ +++++++.|+|++.+++||++++||++..+.|++||++|.|+.. .++.+
T Consensus 59 ~~lhg~~~~~~r~~~~~~f~~-g~~~vl-vaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~l 134 (212)
T 3eaq_A 59 QALHGDLSQGERERVLGAFRQ-GEVRVL-VATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGG--RVVLL 134 (212)
T ss_dssp EEECSSSCHHHHHHHHHHHHS-SSCCEE-EECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--B--EEEEE
T ss_pred EEEECCCCHHHHHHHHHHHHC-CCCeEE-EecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCC--eEEEE
Confidence 468999999999999999995 456675 55599999999999999999999999999999999999999664 44455
Q ss_pred eeCC
Q psy12190 82 VAKQ 85 (105)
Q Consensus 82 ~~~~ 85 (105)
+...
T Consensus 135 ~~~~ 138 (212)
T 3eaq_A 135 YGPR 138 (212)
T ss_dssp ECGG
T ss_pred Echh
Confidence 5543
No 22
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.64 E-value=2.3e-16 Score=114.83 Aligned_cols=84 Identities=20% Similarity=0.154 Sum_probs=75.7
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCC-eEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQD-SVLIQY 80 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~-~v~v~~ 80 (105)
..+||+++.++|+++++.|++ +...+||++..++++|+|++.+++||+++++|++..+.|++||++|.|+.+ .+.||.
T Consensus 375 ~~~~g~~~~~~r~~i~~~f~~-g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 375 YYVSGEVDTETRNIMKTLAEN-GKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EEESSSTTHHHHHHHHHHHHH-CCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred EEEECCCCHHHHHHHHHHHhC-CCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 468999999999999999995 446676666699999999999999999999999999999999999999986 899999
Q ss_pred EeeCCC
Q psy12190 81 LVAKQT 86 (105)
Q Consensus 81 l~~~~s 86 (105)
+..+.+
T Consensus 454 ~~~~~~ 459 (510)
T 2oca_A 454 LIDDAG 459 (510)
T ss_dssp EEEECC
T ss_pred eecchh
Confidence 997654
No 23
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.60 E-value=7.2e-16 Score=106.91 Aligned_cols=80 Identities=21% Similarity=0.380 Sum_probs=68.3
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..+||+++.++|..+++.|+++ ...++ ++++++++|+|++.+++||++++||++..+.|++||++|.|+...+. .+
T Consensus 266 ~~~~~~~~~~~r~~~~~~f~~~-~~~vl-v~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~--~~ 341 (367)
T 1hv8_A 266 GAIHGDLSQSQREKVIRLFKQK-KIRIL-IATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAI--SI 341 (367)
T ss_dssp EEECSSSCHHHHHHHHHHHHTT-SSSEE-EECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEE--EE
T ss_pred EEeeCCCCHHHHHHHHHHHHcC-CCeEE-EECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEE--EE
Confidence 4689999999999999999954 46664 55599999999999999999999999999999999999999776554 44
Q ss_pred eeCC
Q psy12190 82 VAKQ 85 (105)
Q Consensus 82 ~~~~ 85 (105)
+.+.
T Consensus 342 ~~~~ 345 (367)
T 1hv8_A 342 INRR 345 (367)
T ss_dssp ECTT
T ss_pred EcHH
Confidence 4554
No 24
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.60 E-value=3.2e-15 Score=104.81 Aligned_cols=93 Identities=19% Similarity=0.264 Sum_probs=74.6
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..+||+++.++|..+++.|+++ ...+ |++++++++|+|++.+++||++++||++..+.|++||++|.|+...+.+ +
T Consensus 278 ~~~~~~~~~~~r~~~~~~f~~~-~~~v-lv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~--~ 353 (391)
T 1xti_A 278 IAIHRGMPQEERLSRYQQFKDF-QRRI-LVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAIT--F 353 (391)
T ss_dssp EEECTTSCHHHHHHHHHHHHTT-CCSE-EEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEE--E
T ss_pred EEEeCCCCHHHHHHHHHHHhcC-CCcE-EEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEE--E
Confidence 4689999999999999999954 4566 4566999999999999999999999999999999999999997655543 3
Q ss_pred eeCCCHHHHHHHHHHhhh
Q psy12190 82 VAKQTADDYLWPLVMTKL 99 (105)
Q Consensus 82 ~~~~s~d~~i~~~~~~K~ 99 (105)
+.+. -|.++++.++.+.
T Consensus 354 ~~~~-~~~~~~~~~~~~~ 370 (391)
T 1xti_A 354 VSDE-NDAKILNDVQDRF 370 (391)
T ss_dssp ECSH-HHHHHHHHHHHHT
T ss_pred Eccc-chHHHHHHHHHHh
Confidence 4432 3556666665543
No 25
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.57 E-value=5.2e-15 Score=106.35 Aligned_cols=93 Identities=13% Similarity=0.215 Sum_probs=74.2
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..+||+++.++|.++++.|+++ ...+ |+++++++.|+|++.+++||++++|+++..+.|++||++|.|+...+.. +
T Consensus 328 ~~lhg~~~~~~R~~~l~~F~~g-~~~v-LvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~--~ 403 (434)
T 2db3_A 328 TSIHGDRLQSQREQALRDFKNG-SMKV-LIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATS--F 403 (434)
T ss_dssp EEESTTSCHHHHHHHHHHHHTS-SCSE-EEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEE--E
T ss_pred EEEeCCCCHHHHHHHHHHHHcC-CCcE-EEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEE--E
Confidence 4689999999999999999954 4666 4556999999999999999999999999999999999999997654444 4
Q ss_pred eeCC---CHHHHHHHHHHhh
Q psy12190 82 VAKQ---TADDYLWPLVMTK 98 (105)
Q Consensus 82 ~~~~---s~d~~i~~~~~~K 98 (105)
+... .+-..+.+.+...
T Consensus 404 ~~~~~~~~~~~~l~~~l~~~ 423 (434)
T 2db3_A 404 FDPEKDRAIAADLVKILEGS 423 (434)
T ss_dssp ECTTTCGGGHHHHHHHHHHT
T ss_pred EeccccHHHHHHHHHHHHHc
Confidence 4422 3455555555443
No 26
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.57 E-value=2.9e-15 Score=103.80 Aligned_cols=80 Identities=20% Similarity=0.325 Sum_probs=64.1
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..+||+++.++|..+++.|+.+ ..+++ +++++++.|+|++.+++||++++||++..+.|++||++|.|+.. ..+.+
T Consensus 56 ~~lhg~l~~~~r~~~~~~f~~g-~~~vL-VaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G--~~i~l 131 (300)
T 3i32_A 56 QALHGDMSQGERERVMGAFRQG-EVRVL-VATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGG--RVVLL 131 (300)
T ss_dssp EEECSCCCTHHHHHHHHHHHHT-SCCEE-EECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----C--EEEEE
T ss_pred EEEeCCCCHHHHHHHHHHhhcC-CceEE-EEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCc--eEEEE
Confidence 4689999999999999999954 46675 55599999999999999999999999999999999999999764 44555
Q ss_pred eeCC
Q psy12190 82 VAKQ 85 (105)
Q Consensus 82 ~~~~ 85 (105)
+...
T Consensus 132 ~~~~ 135 (300)
T 3i32_A 132 YGPR 135 (300)
T ss_dssp ECSS
T ss_pred eChH
Confidence 5554
No 27
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.55 E-value=4.8e-15 Score=104.79 Aligned_cols=93 Identities=17% Similarity=0.274 Sum_probs=71.9
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..+||+++.++|.++++.|+++ ...+ |++++++++|+|++.+++||++++||++..+.|++||++|.|+.. .++.+
T Consensus 304 ~~~h~~~~~~~r~~~~~~f~~g-~~~v-lvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~ 379 (417)
T 2i4i_A 304 TSIHGDRSQRDREEALHQFRSG-KSPI-LVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG--LATSF 379 (417)
T ss_dssp EEECTTSCHHHHHHHHHHHHHT-SSCE-EEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCE--EEEEE
T ss_pred eEecCCCCHHHHHHHHHHHHcC-CCCE-EEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCc--eEEEE
Confidence 4689999999999999999854 4566 556699999999999999999999999999999999999999764 44444
Q ss_pred eeCC--CHHHHHHHHHHhh
Q psy12190 82 VAKQ--TADDYLWPLVMTK 98 (105)
Q Consensus 82 ~~~~--s~d~~i~~~~~~K 98 (105)
+.+. ..-..+.+.+..+
T Consensus 380 ~~~~~~~~~~~l~~~~~~~ 398 (417)
T 2i4i_A 380 FNERNINITKDLLDLLVEA 398 (417)
T ss_dssp ECGGGGGGHHHHHHHHHHT
T ss_pred EccccHHHHHHHHHHHHHh
Confidence 5443 3445555555443
No 28
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.55 E-value=4.5e-15 Score=104.51 Aligned_cols=91 Identities=19% Similarity=0.246 Sum_probs=73.0
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..+||+++.++|..+++.|+++ ...+ |++++++++|+|++.+++||++++||++..+.|++||++|.|+.. .++.+
T Consensus 286 ~~~~~~~~~~~r~~~~~~f~~g-~~~v-Lv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~l 361 (400)
T 1s2m_A 286 YYSHARMKQQERNKVFHEFRQG-KVRT-LVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG--LAINL 361 (400)
T ss_dssp EEECTTSCHHHHHHHHHHHHTT-SSSE-EEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCE--EEEEE
T ss_pred EEecCCCCHHHHHHHHHHHhcC-CCcE-EEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCc--eEEEE
Confidence 4689999999999999999854 4566 456699999999999999999999999999999999999999654 45555
Q ss_pred eeCCCHHHHHHHHHHhh
Q psy12190 82 VAKQTADDYLWPLVMTK 98 (105)
Q Consensus 82 ~~~~s~d~~i~~~~~~K 98 (105)
+.++ |...++.++++
T Consensus 362 ~~~~--~~~~~~~i~~~ 376 (400)
T 1s2m_A 362 INWN--DRFNLYKIEQE 376 (400)
T ss_dssp ECGG--GHHHHHHHHHH
T ss_pred eccc--hHHHHHHHHHH
Confidence 6655 33344444443
No 29
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.54 E-value=7.7e-15 Score=103.73 Aligned_cols=89 Identities=19% Similarity=0.299 Sum_probs=72.2
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..+||+++.++|..+++.|+++. ..+ |++++++++|+|++.+++||++++||++..+.|++||++|.|+.. .++.+
T Consensus 304 ~~~h~~~~~~~r~~~~~~f~~g~-~~v-lv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~ 379 (410)
T 2j0s_A 304 SSMHGDMPQKERESIMKEFRSGA-SRV-LISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKG--VAINF 379 (410)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTS-SCE-EEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCE--EEEEE
T ss_pred EEeeCCCCHHHHHHHHHHHHCCC-CCE-EEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCce--EEEEE
Confidence 46899999999999999999544 566 456699999999999999999999999999999999999999664 44555
Q ss_pred eeCCCHHHHHHHHHH
Q psy12190 82 VAKQTADDYLWPLVM 96 (105)
Q Consensus 82 ~~~~s~d~~i~~~~~ 96 (105)
+.+. |...++.++
T Consensus 380 ~~~~--~~~~~~~i~ 392 (410)
T 2j0s_A 380 VKND--DIRILRDIE 392 (410)
T ss_dssp EEGG--GHHHHHHHH
T ss_pred ecHH--HHHHHHHHH
Confidence 5554 333444443
No 30
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.54 E-value=6.4e-15 Score=110.54 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=62.6
Q ss_pred EEEECC--------CCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCC
Q psy12190 2 IRIDGS--------VGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQ 73 (105)
Q Consensus 2 ~~~~g~--------~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~ 73 (105)
..+||+ ++.++|.+++++|++ +...|| ++++++++|+|++.++.||++|+|||+..+.|++||++|.|
T Consensus 434 ~~lhg~~~~~~~~~~~~~eR~~~~~~F~~-g~~~VL-VaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g-- 509 (699)
T 4gl2_A 434 HHLIGAGHSSEFKPMTQNEQKEVISKFRT-GKINLL-IATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE-- 509 (699)
T ss_dssp EECCCSCCCTTCCCCCHHHHHHHHHHHCC----CCS-EEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS--
T ss_pred EEEECCCCccCCCCCCHHHHHHHHHHHhc-CCCcEE-EEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC--
Confidence 356787 999999999999995 546675 55699999999999999999999999999999999975554
Q ss_pred CeEEEEEEeeCCC
Q psy12190 74 DSVLIQYLVAKQT 86 (105)
Q Consensus 74 ~~v~v~~l~~~~s 86 (105)
..++.+...++
T Consensus 510 --~~~~l~~~~~~ 520 (699)
T 4gl2_A 510 --STYVLVAHSGS 520 (699)
T ss_dssp --CEEEEEEESSS
T ss_pred --ceEEEEEeCCc
Confidence 33444445554
No 31
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.53 E-value=1.6e-14 Score=101.04 Aligned_cols=91 Identities=18% Similarity=0.346 Sum_probs=71.8
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCC------CcChHhHHHHhhhccCCCCe
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFW------NPGILTQAEDRAHRIGQQDS 75 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~w------n~~~~~Q~~gR~~R~Gq~~~ 75 (105)
..+||+++.++|.++++.|+++ ...+ |++++++++|+|++.+++||++++|| ++..+.|++||++|.|+...
T Consensus 271 ~~~~~~~~~~~r~~~~~~f~~g-~~~v-lv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~ 348 (395)
T 3pey_A 271 SILHGDLQTQERDRLIDDFREG-RSKV-LITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGV 348 (395)
T ss_dssp EEECTTSCHHHHHHHHHHHHTT-SCCE-EEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEE
T ss_pred EEeCCCCCHHHHHHHHHHHHCC-CCCE-EEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCce
Confidence 4689999999999999999954 4566 55669999999999999999999999 99999999999999997554
Q ss_pred EEEEEEeeCCCHHHHHHHHHHh
Q psy12190 76 VLIQYLVAKQTADDYLWPLVMT 97 (105)
Q Consensus 76 v~v~~l~~~~s~d~~i~~~~~~ 97 (105)
+. .++... -+..+++.++.
T Consensus 349 ~~--~~~~~~-~~~~~~~~i~~ 367 (395)
T 3pey_A 349 AI--SFVHDK-NSFNILSAIQK 367 (395)
T ss_dssp EE--EEECSH-HHHHHHHHHHH
T ss_pred EE--EEEech-HHHHHHHHHHH
Confidence 43 344332 23444444444
No 32
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.50 E-value=9.1e-14 Score=97.85 Aligned_cols=93 Identities=16% Similarity=0.263 Sum_probs=72.8
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCc------ChHhHHHHhhhccCCCCe
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNP------GILTQAEDRAHRIGQQDS 75 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~------~~~~Q~~gR~~R~Gq~~~ 75 (105)
..+||+++.++|..+++.|+++ ...+ |++++++++|+|++.+++||++++||++ ..+.|++||++|.|+...
T Consensus 294 ~~~~~~~~~~~r~~~~~~f~~g-~~~v-lv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~ 371 (412)
T 3fht_A 294 ALLSGEMMVEQRAAVIERFREG-KEKV-LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGL 371 (412)
T ss_dssp EEECTTSCHHHHHHHHHHHHTT-SCSE-EEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEE
T ss_pred EEecCCCCHHHHHHHHHHHHCC-CCcE-EEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCce
Confidence 4689999999999999999954 4566 5566999999999999999999999876 589999999999996543
Q ss_pred EEEEEEeeCCCHHHHHHHHHHhhh
Q psy12190 76 VLIQYLVAKQTADDYLWPLVMTKL 99 (105)
Q Consensus 76 v~v~~l~~~~s~d~~i~~~~~~K~ 99 (105)
++.++.. .-|...++.++.+.
T Consensus 372 --~~~~~~~-~~~~~~~~~i~~~~ 392 (412)
T 3fht_A 372 --AVNMVDS-KHSMNILNRIQEHF 392 (412)
T ss_dssp --EEEEECS-HHHHHHHHHHHHHH
T ss_pred --EEEEEcC-hhhHHHHHHHHHHH
Confidence 4444433 23456666665544
No 33
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.49 E-value=1.6e-14 Score=101.87 Aligned_cols=89 Identities=19% Similarity=0.294 Sum_probs=60.3
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..+||+++.++|.++++.|++ +..++ |++++++++|+|++.+++||+++++|++..+.|++||++|.|+.. .++.+
T Consensus 308 ~~~h~~~~~~~r~~~~~~f~~-g~~~v-lv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~ 383 (414)
T 3eiq_A 308 SAMHGDMDQKERDVIMREFRS-GSSRV-LITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG--VAINM 383 (414)
T ss_dssp EEC---CHHHHHHHHHHHHSC-C---C-EEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC---------CEEEE
T ss_pred EEecCCCCHHHHHHHHHHHHc-CCCcE-EEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCc--eEEEE
Confidence 467999999999999999985 44566 566699999999999999999999999999999999999999664 44556
Q ss_pred eeCCCHHHHHHHHHH
Q psy12190 82 VAKQTADDYLWPLVM 96 (105)
Q Consensus 82 ~~~~s~d~~i~~~~~ 96 (105)
+.+. |...++.++
T Consensus 384 ~~~~--~~~~~~~~~ 396 (414)
T 3eiq_A 384 VTEE--DKRTLRDIE 396 (414)
T ss_dssp ECST--HHHHHHHHH
T ss_pred EcHH--HHHHHHHHH
Confidence 6665 444444443
No 34
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.49 E-value=1.4e-13 Score=101.19 Aligned_cols=90 Identities=13% Similarity=0.218 Sum_probs=72.3
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..+||+++.++|..+++.|+++ ...| |+++++++.|+|++.+++||++++|+++..+.|++||++|.|+... .+.+
T Consensus 370 ~~~h~~~~~~~R~~~~~~f~~g-~~~v-LvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~--~i~~ 445 (563)
T 3i5x_A 370 LEFHGKITQNKRTSLVKRFKKD-ESGI-LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGS--SVLF 445 (563)
T ss_dssp EEESTTSCHHHHHHHHHHHHHC-SSEE-EEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEE--EEEE
T ss_pred EEecCCCCHHHHHHHHHHHhcC-CCCE-EEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCce--EEEE
Confidence 3589999999999999999964 4666 4556999999999999999999999999999999999999996544 4444
Q ss_pred eeCCCHHHHHHHHHHh
Q psy12190 82 VAKQTADDYLWPLVMT 97 (105)
Q Consensus 82 ~~~~s~d~~i~~~~~~ 97 (105)
+.+. |...++.++.
T Consensus 446 ~~~~--e~~~~~~l~~ 459 (563)
T 3i5x_A 446 ICKD--ELPFVRELED 459 (563)
T ss_dssp EEGG--GHHHHHHHHH
T ss_pred Echh--HHHHHHHHHH
Confidence 4443 4445555543
No 35
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.48 E-value=7.2e-15 Score=110.20 Aligned_cols=79 Identities=19% Similarity=0.269 Sum_probs=38.1
Q ss_pred ECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEEeeC
Q psy12190 5 DGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYLVAK 84 (105)
Q Consensus 5 ~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l~~~ 84 (105)
||+++.++|.+++++|+.++..+|| ++++++++|+|++.+++||++|+|||+..+.|++|| +|. ++..++.++.+
T Consensus 441 h~~~~~~eR~~v~~~F~~~g~~~vL-VaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~ 515 (696)
T 2ykg_A 441 NTGMTLPAQKCILDAFKASGDHNIL-IATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSN 515 (696)
T ss_dssp --------------------CCSCS-EEEESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEESC
T ss_pred ccCCCHHHHHHHHHHHHhcCCccEE-EEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEecC
Confidence 6699999999999999963556775 556999999999999999999999999999999999 875 56778888888
Q ss_pred CCHH
Q psy12190 85 QTAD 88 (105)
Q Consensus 85 ~s~d 88 (105)
++.+
T Consensus 516 ~~~~ 519 (696)
T 2ykg_A 516 AGVI 519 (696)
T ss_dssp HHHH
T ss_pred CCHH
Confidence 7764
No 36
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.47 E-value=3.8e-15 Score=104.39 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=0.0
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQ 79 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~ 79 (105)
..++|+++.++|..+++.|++ +...+ |++++++++|+|++.+++||++++||++..+.|++||++|.|+...+.++
T Consensus 287 ~~~~~~~~~~~r~~~~~~f~~-~~~~v-lv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 362 (394)
T 1fuu_A 287 SAIYSDLPQQERDTIMKEFRS-GSSRI-LISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINF 362 (394)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEeeCCCCHHHHHHHHHHHHC-CCCcE-EEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEE
Confidence 357899999999999999985 44556 55669999999999999999999999999999999999999976554443
No 37
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=1.9e-13 Score=101.15 Aligned_cols=90 Identities=13% Similarity=0.221 Sum_probs=72.3
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l 81 (105)
..+||+++.++|.++++.|+.+ ...| |+++++++.|+|++.+++||++++|+++..+.|++||++|.|+...+ +.+
T Consensus 319 ~~~hg~~~~~~R~~~~~~F~~g-~~~v-LVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~--i~~ 394 (579)
T 3sqw_A 319 LEFHGKITQNKRTSLVKRFKKD-ESGI-LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSS--VLF 394 (579)
T ss_dssp EEESTTSCHHHHHHHHHHHHHC-SSEE-EEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEE--EEE
T ss_pred EEecCCCCHHHHHHHHHHhhcC-CCeE-EEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceE--EEE
Confidence 4689999999999999999964 4566 45569999999999999999999999999999999999999975444 444
Q ss_pred eeCCCHHHHHHHHHHh
Q psy12190 82 VAKQTADDYLWPLVMT 97 (105)
Q Consensus 82 ~~~~s~d~~i~~~~~~ 97 (105)
+.+. |...++.++.
T Consensus 395 ~~~~--e~~~~~~l~~ 408 (579)
T 3sqw_A 395 ICKD--ELPFVRELED 408 (579)
T ss_dssp EEGG--GHHHHHHHHH
T ss_pred Eccc--HHHHHHHHHH
Confidence 4443 4445554444
No 38
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.45 E-value=1.2e-13 Score=101.64 Aligned_cols=76 Identities=21% Similarity=0.282 Sum_probs=66.6
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQ 79 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~ 79 (105)
..+||+++.++|..+.+.|.++. ..|+ +++.+++.|+|+++++.||++++|+++..+.|++||++|.|+...+.++
T Consensus 264 ~~~h~~l~~~~R~~~~~~f~~g~-~~vl-VaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~ 339 (523)
T 1oyw_A 264 AAYHAGLENNVRADVQEKFQRDD-LQIV-VATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLF 339 (523)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTS-CSEE-EECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred EEecCCCCHHHHHHHHHHHHcCC-CeEE-EEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEE
Confidence 46899999999999999999544 6674 5559999999999999999999999999999999999999987655443
No 39
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.44 E-value=6.3e-14 Score=103.81 Aligned_cols=79 Identities=18% Similarity=0.178 Sum_probs=68.4
Q ss_pred EEECCCCHHHHHHHHHHhccCCC-eeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCC---CCeEEE
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDK-FRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQ---QDSVLI 78 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~-~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq---~~~v~v 78 (105)
.++|.++ ++|++++++|++++. ..++|++++++++|+|++.+++||+++++|++..+.|++||++|.|+ +..+.|
T Consensus 476 ~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I 554 (590)
T 3h1t_A 476 RVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNI 554 (590)
T ss_dssp ECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEE
T ss_pred EEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEE
Confidence 4677765 479999999997543 55678888999999999999999999999999999999999999995 567888
Q ss_pred EEEe
Q psy12190 79 QYLV 82 (105)
Q Consensus 79 ~~l~ 82 (105)
+.++
T Consensus 555 ~D~~ 558 (590)
T 3h1t_A 555 IDYT 558 (590)
T ss_dssp EECS
T ss_pred EecC
Confidence 8887
No 40
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.42 E-value=2.6e-13 Score=101.28 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=66.6
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCCCeEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQ 79 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~ 79 (105)
..+||+++.++|.++++.|..+ ...| |+++.+++.|+|+++++.||++++|++...+.|++||++|.|+...+.++
T Consensus 295 ~~~h~~l~~~~R~~~~~~F~~g-~~~V-lVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 295 GAYHANLEPEDKTTVHRKWSAN-EIQV-VVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp EEECTTSCHHHHHHHHHHHHTT-SSSE-EEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred EEecCCCCHHHHHHHHHHHHcC-CCeE-EEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 4689999999999999999954 4666 45569999999999999999999999999999999999999987555544
No 41
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.37 E-value=1.1e-12 Score=102.81 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=78.0
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEE----ecC----CCCcChHhHHHHhhhccCCCC
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVF----AEL----FWNPGILTQAEDRAHRIGQQD 74 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~----~~~----~wn~~~~~Q~~gR~~R~Gq~~ 74 (105)
.+||++++.+|..+.+.|++ +..+||+++ .+++.|+|++.++.||. ++. +|++..+.|++||++|.|+..
T Consensus 411 ~~Hggl~~~eR~~ve~~F~~-G~ikVLVAT-~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~ 488 (1010)
T 2xgj_A 411 IHHSGLLPILKEVIEILFQE-GFLKVLFAT-ETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDD 488 (1010)
T ss_dssp EESTTSCHHHHHHHHHHHHT-TCCSEEEEE-GGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCS
T ss_pred EECCCCCHHHHHHHHHHHhc-CCCcEEEEe-hHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCC
Confidence 57999999999999999995 557775555 99999999999999998 998 899999999999999999988
Q ss_pred eEEEEEEeeCCCHHHHHHHHHH
Q psy12190 75 SVLIQYLVAKQTADDYLWPLVM 96 (105)
Q Consensus 75 ~v~v~~l~~~~s~d~~i~~~~~ 96 (105)
...++.++.++.-++.+.+++.
T Consensus 489 ~G~vi~l~~~~~e~~~~~~l~~ 510 (1010)
T 2xgj_A 489 RGIVIMMIDEKMEPQVAKGMVK 510 (1010)
T ss_dssp SEEEEEEECSCCCHHHHHHHHS
T ss_pred ceEEEEEECCCCCHHHHHHHHh
Confidence 8899999887644444444443
No 42
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.28 E-value=7.7e-12 Score=98.78 Aligned_cols=95 Identities=15% Similarity=0.141 Sum_probs=77.2
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcCh--------HhHHHHhhhccCCC
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGI--------LTQAEDRAHRIGQQ 73 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~--------~~Q~~gR~~R~Gq~ 73 (105)
..+||++++.+|..+++.|.+ +..+||++ |.+++.|+|++.+++||.++.+|+... +.|++||++|.|..
T Consensus 508 ~~~Hg~l~~~~R~~v~~~F~~-G~ikVLVA-T~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d 585 (1108)
T 3l9o_A 508 GIHHSGLLPILKEVIEILFQE-GFLKVLFA-TETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLD 585 (1108)
T ss_dssp EEECSCSCHHHHHHHHHHHHH-TCCCEEEE-ESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSC
T ss_pred eeecCCCCHHHHHHHHHHHhC-CCCeEEEE-CcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCC
Confidence 458999999999999999995 55677555 599999999999999998888877765 89999999999999
Q ss_pred CeEEEEEEeeCCCHHHHHHHHHHhh
Q psy12190 74 DSVLIQYLVAKQTADDYLWPLVMTK 98 (105)
Q Consensus 74 ~~v~v~~l~~~~s~d~~i~~~~~~K 98 (105)
....++.++.++..+..+.+++..+
T Consensus 586 ~~G~~ill~~~~~~~~~~~~l~~~~ 610 (1108)
T 3l9o_A 586 DRGIVIMMIDEKMEPQVAKGMVKGQ 610 (1108)
T ss_dssp SSEEEEEEECCCCCHHHHHHHHHCC
T ss_pred CceEEEEEecCCcCHHHHHHHhcCC
Confidence 9999999998876555555555544
No 43
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.27 E-value=1.1e-11 Score=88.01 Aligned_cols=65 Identities=17% Similarity=0.140 Sum_probs=56.8
Q ss_pred HHHhccCCCeeEEEEe---cccceecccccc-cCeeEEecCC--CCcChHhHHHHhhhccCCC--CeEEEEEEe
Q psy12190 17 VDQFQYEDKFRVAVLS---ITAANSGITLTA-ANLVVFAELF--WNPGILTQAEDRAHRIGQQ--DSVLIQYLV 82 (105)
Q Consensus 17 ~~~F~~~~~~~vll~s---~~~~~~Gl~l~~-~~~vi~~~~~--wn~~~~~Q~~gR~~R~Gq~--~~v~v~~l~ 82 (105)
++.|++ +..++|+++ +++++.|+|++. +++||++++| +++..+.|++||++|.|+. +...++.++
T Consensus 290 ~~~f~~-g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 290 FEDFKV-GKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp HHHHHT-TSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred HHHHhC-CCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 999995 557787774 799999999999 9999999999 9999999999999999976 566666666
No 44
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.26 E-value=9.6e-12 Score=94.15 Aligned_cols=86 Identities=14% Similarity=0.089 Sum_probs=74.2
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEE----ec----CCCCcChHhHHHHhhhccCCC
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVF----AE----LFWNPGILTQAEDRAHRIGQQ 73 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~----~~----~~wn~~~~~Q~~gR~~R~Gq~ 73 (105)
..+||+++.++|..+.+.|.+ +..+|+ +++.+++.|+|++..+.||. ++ .|+++..+.|++||++|.|+.
T Consensus 298 ~~~h~~l~~~~R~~v~~~f~~-g~~~vl-vaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~ 375 (720)
T 2zj8_A 298 AFHHAGLGRDERVLVEENFRK-GIIKAV-VATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYD 375 (720)
T ss_dssp EEECTTSCHHHHHHHHHHHHT-TSSCEE-EECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTC
T ss_pred eeecCCCCHHHHHHHHHHHHC-CCCeEE-EECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCC
Confidence 357999999999999999995 557775 55599999999999999887 66 578899999999999999999
Q ss_pred CeEEEEEEeeCCCHHH
Q psy12190 74 DSVLIQYLVAKQTADD 89 (105)
Q Consensus 74 ~~v~v~~l~~~~s~d~ 89 (105)
....+|.++.+...+.
T Consensus 376 ~~G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 376 EVGEGIIVSTSDDPRE 391 (720)
T ss_dssp SEEEEEEECSSSCHHH
T ss_pred CCceEEEEecCccHHH
Confidence 8999999998877554
No 45
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.26 E-value=4.5e-13 Score=96.87 Aligned_cols=73 Identities=19% Similarity=0.344 Sum_probs=0.0
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCc------ChHhHHHHhhhccCCCCeE
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNP------GILTQAEDRAHRIGQQDSV 76 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~------~~~~Q~~gR~~R~Gq~~~v 76 (105)
.+||+++..+|..+++.|++ +...+ |+++++++.|+|++.+++||++++||++ ..+.|++||++|.|+...+
T Consensus 362 ~lh~~~~~~~R~~~~~~f~~-g~~~i-Lv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~ 439 (479)
T 3fmp_B 362 LLSGEMMVEQRAAVIERFRE-GKEKV-LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA 439 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EecCCCCHHHHHHHHHHHHc-CCCcE-EEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceE
Confidence 57999999999999999995 44666 4555999999999999999999999865 6899999999999965444
Q ss_pred E
Q psy12190 77 L 77 (105)
Q Consensus 77 ~ 77 (105)
.
T Consensus 440 i 440 (479)
T 3fmp_B 440 V 440 (479)
T ss_dssp -
T ss_pred E
Confidence 3
No 46
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.24 E-value=1e-11 Score=93.80 Aligned_cols=83 Identities=16% Similarity=0.119 Sum_probs=68.7
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEE----ec-------CCCCcChHhHHHHhhhcc
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVF----AE-------LFWNPGILTQAEDRAHRI 70 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~----~~-------~~wn~~~~~Q~~gR~~R~ 70 (105)
..+||+++.++|..+.+.|.+ +..+|+ +++.+++.|+|++..++||. ++ .++++..+.|+.||++|.
T Consensus 316 ~~~h~~l~~~~r~~v~~~f~~-g~~~vl-vaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~ 393 (715)
T 2va8_A 316 AYHHAGLSKALRDLIEEGFRQ-RKIKVI-VATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRP 393 (715)
T ss_dssp EEECTTSCHHHHHHHHHHHHT-TCSCEE-EECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCT
T ss_pred EEECCCCCHHHHHHHHHHHHc-CCCeEE-EEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCC
Confidence 357999999999999999995 557774 55599999999999999998 88 788999999999999999
Q ss_pred CCCCeEEEEEEeeCCC
Q psy12190 71 GQQDSVLIQYLVAKQT 86 (105)
Q Consensus 71 Gq~~~v~v~~l~~~~s 86 (105)
|+..+..+|.++.+..
T Consensus 394 g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 394 GFDQIGESIVVVRDKE 409 (715)
T ss_dssp TTCSCEEEEEECSCGG
T ss_pred CCCCCceEEEEeCCch
Confidence 9988888998887764
No 47
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.23 E-value=1.3e-11 Score=93.15 Aligned_cols=85 Identities=20% Similarity=0.233 Sum_probs=73.5
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEE----ec---CCCCcChHhHHHHhhhccCCCCe
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVF----AE---LFWNPGILTQAEDRAHRIGQQDS 75 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~----~~---~~wn~~~~~Q~~gR~~R~Gq~~~ 75 (105)
.+||+++.++|..+.+.|.+ +..+| |+++.+++.|+|++..+.||. || .++++..+.|+.||++|.|+.++
T Consensus 301 ~~h~~l~~~~R~~v~~~f~~-g~~~v-lvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~ 378 (702)
T 2p6r_A 301 FHHAGLLNGQRRVVEDAFRR-GNIKV-VVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDER 378 (702)
T ss_dssp EECTTSCHHHHHHHHHHHHT-TSCCE-EEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSC
T ss_pred EecCCCCHHHHHHHHHHHHC-CCCeE-EEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCC
Confidence 57999999999999999995 45677 455699999999999999988 55 68899999999999999999989
Q ss_pred EEEEEEeeCCCHHH
Q psy12190 76 VLIQYLVAKQTADD 89 (105)
Q Consensus 76 v~v~~l~~~~s~d~ 89 (105)
..+|.++.+...+.
T Consensus 379 G~~~~l~~~~~~~~ 392 (702)
T 2p6r_A 379 GEAIIIVGKRDREI 392 (702)
T ss_dssp EEEEEECCGGGHHH
T ss_pred ceEEEEecCccHHH
Confidence 99999988776443
No 48
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.21 E-value=2.1e-11 Score=92.30 Aligned_cols=81 Identities=17% Similarity=0.247 Sum_probs=68.6
Q ss_pred EEEECCCCHHHHHHHHHHhcc-CCCeeEEEEecccceecccccccCeeEEecC--------------CCCcChHhHHHHh
Q psy12190 2 IRIDGSVGSEERKSVVDQFQY-EDKFRVAVLSITAANSGITLTAANLVVFAEL--------------FWNPGILTQAEDR 66 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~-~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~--------------~wn~~~~~Q~~gR 66 (105)
..+||++++++|...++.|+. ++..+| |+++++++.|+|+ .+++||++++ |++...+.|+.||
T Consensus 348 ~~lHG~L~~~~R~~~~~~F~~~~g~~~V-LVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GR 425 (677)
T 3rc3_A 348 AVIYGSLPPGTKLAQAKKFNDPNDPCKI-LVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGR 425 (677)
T ss_dssp EEECTTSCHHHHHHHHHHHHCTTSSCCE-EEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTT
T ss_pred eeeeccCCHHHHHHHHHHHHccCCCeEE-EEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcC
Confidence 468999999999999999996 244667 4555999999999 9999999998 7889999999999
Q ss_pred hhccCCC-CeEEEEEEeeC
Q psy12190 67 AHRIGQQ-DSVLIQYLVAK 84 (105)
Q Consensus 67 ~~R~Gq~-~~v~v~~l~~~ 84 (105)
++|.|.. .+..++.+..+
T Consensus 426 AGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 426 AGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp BTCTTSSCSSEEEEESSTT
T ss_pred CCCCCCCCCCEEEEEEecc
Confidence 9999987 45677776544
No 49
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.19 E-value=2e-11 Score=96.68 Aligned_cols=79 Identities=22% Similarity=0.323 Sum_probs=66.0
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecC-CCCcChHhHHHHhhhccCCCCeEEEEE
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAEL-FWNPGILTQAEDRAHRIGQQDSVLIQY 80 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~-~wn~~~~~Q~~gR~~R~Gq~~~v~v~~ 80 (105)
..+||+++.++|++++++|++ +...|| +++.+++.|+|++++++||++++ .|+...+.|+.||++|.|+.. ++|.
T Consensus 842 ~~lhg~~~~~eR~~il~~F~~-g~~~VL-VaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g--~~~l 917 (1151)
T 2eyq_A 842 AIGHGQMRERELERVMNDFHH-QRFNVL-VCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA--YAWL 917 (1151)
T ss_dssp EECCSSCCHHHHHHHHHHHHT-TSCCEE-EESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCE--EEEE
T ss_pred EEEeCCCCHHHHHHHHHHHHc-CCCcEE-EECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCce--EEEE
Confidence 357999999999999999994 456775 55589999999999999999988 589999999999999999654 4455
Q ss_pred EeeC
Q psy12190 81 LVAK 84 (105)
Q Consensus 81 l~~~ 84 (105)
++..
T Consensus 918 l~~~ 921 (1151)
T 2eyq_A 918 LTPH 921 (1151)
T ss_dssp EECC
T ss_pred EECC
Confidence 5544
No 50
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.18 E-value=2.3e-12 Score=94.29 Aligned_cols=76 Identities=20% Similarity=0.337 Sum_probs=46.2
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCC------CCcChHhHHHHhhhccCCCCe
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELF------WNPGILTQAEDRAHRIGQQDS 75 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~------wn~~~~~Q~~gR~~R~Gq~~~ 75 (105)
..+||+++.++|..+++.|+++ ...+ |+++++++.|+|++.++.||+++++ +++..+.|++||++|.|+...
T Consensus 385 ~~~hg~~~~~~R~~il~~f~~g-~~~V-LVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~ 462 (508)
T 3fho_A 385 ACLTGNLEGAQRDAIMDSFRVG-TSKV-LVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGV 462 (508)
T ss_dssp CEEC-----CTTGGGTHHHHSS-SCCC-CEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CE
T ss_pred EEEeCCCCHHHHHHHHHHHHCC-CCeE-EEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcE
Confidence 3578999999999999999854 4566 5556999999999999999999999 778899999999999997655
Q ss_pred EEEE
Q psy12190 76 VLIQ 79 (105)
Q Consensus 76 v~v~ 79 (105)
+.++
T Consensus 463 ~i~l 466 (508)
T 3fho_A 463 SINF 466 (508)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 51
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.14 E-value=9.6e-12 Score=95.36 Aligned_cols=75 Identities=24% Similarity=0.385 Sum_probs=63.9
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCC-CCcChHhHHHHhhhccCCCCeEEEE
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELF-WNPGILTQAEDRAHRIGQQDSVLIQ 79 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~-wn~~~~~Q~~gR~~R~Gq~~~v~v~ 79 (105)
.+||+++.++|.++++.|++ +...+ |+++.+++.|+|++++++||+++++ |+...+.|+.||++|.|+...+.++
T Consensus 618 ~lHG~m~~~eR~~v~~~F~~-G~~~I-LVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill 693 (780)
T 1gm5_A 618 LMHGRLSQEEKDRVMLEFAE-GRYDI-LVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLV 693 (780)
T ss_dssp CCCSSSCCSCSHHHHHHHTT-TSSSB-CCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECC
T ss_pred EEeCCCCHHHHHHHHHHHHC-CCCeE-EEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEE
Confidence 47899999999999999995 44666 5566999999999999999999998 4788889999999999977554443
No 52
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.12 E-value=9.3e-11 Score=91.90 Aligned_cols=91 Identities=18% Similarity=0.192 Sum_probs=73.8
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCC---------CcChHhHHHHhhhccCC
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFW---------NPGILTQAEDRAHRIGQ 72 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~w---------n~~~~~Q~~gR~~R~Gq 72 (105)
..+||++++.+|..+++.|.. +..+|| +++.+++.|+|++. ..||+.+.+. ++..+.|++||++|.|.
T Consensus 403 ~~~H~gl~~~~R~~v~~~F~~-G~~kVL-vAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~ 479 (997)
T 4a4z_A 403 AVHHGGLLPIVKELIEILFSK-GFIKVL-FATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGL 479 (997)
T ss_dssp EEECTTSCHHHHHHHHHHHHT-TCCSEE-EECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTT
T ss_pred eeecCCCCHHHHHHHHHHHHC-CCCcEE-EEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCC
Confidence 467999999999999999995 447775 45599999999999 6666655554 89999999999999999
Q ss_pred CCeEEEEEEeeCCCHHHHHHHHH
Q psy12190 73 QDSVLIQYLVAKQTADDYLWPLV 95 (105)
Q Consensus 73 ~~~v~v~~l~~~~s~d~~i~~~~ 95 (105)
.....++.+...+..++..++..
T Consensus 480 ~~~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 480 DSTGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp CSSEEEEEECCSSCCCHHHHHHH
T ss_pred CcceEEEEecCCCcchHHHHHHH
Confidence 98888888886666565555443
No 53
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.07 E-value=2.3e-10 Score=86.39 Aligned_cols=79 Identities=13% Similarity=0.243 Sum_probs=65.6
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecC-----CCCcChHhHHHHhhhccCCCCeEE
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAEL-----FWNPGILTQAEDRAHRIGQQDSVL 77 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~-----~wn~~~~~Q~~gR~~R~Gq~~~v~ 77 (105)
.+||+++..+|.++++.|.. +...|+ +++++++.|+|++.++.||++|. |+++..+.|++||++|.|. -.
T Consensus 468 ~lh~~~~~~~R~~~~~~f~~-g~~~VL-vaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~---G~ 542 (664)
T 1c4o_A 468 YLHHELDAFKRQALIRDLRL-GHYDCL-VGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR---GE 542 (664)
T ss_dssp EECTTCCHHHHHHHHHHHHT-TSCSEE-EESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT---CE
T ss_pred eecCCCCHHHHHHHHHHhhc-CCceEE-EccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCC---CE
Confidence 46899999999999999985 556664 55599999999999999999998 8899999999999999863 34
Q ss_pred EEEEeeCCC
Q psy12190 78 IQYLVAKQT 86 (105)
Q Consensus 78 v~~l~~~~s 86 (105)
++.++...+
T Consensus 543 ~i~~~~~~~ 551 (664)
T 1c4o_A 543 VWLYADRVS 551 (664)
T ss_dssp EEEECSSCC
T ss_pred EEEEEcCCC
Confidence 555565543
No 54
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.04 E-value=3.3e-10 Score=85.53 Aligned_cols=79 Identities=19% Similarity=0.296 Sum_probs=65.5
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecC-----CCCcChHhHHHHhhhccCCCCeEE
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAEL-----FWNPGILTQAEDRAHRIGQQDSVL 77 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~-----~wn~~~~~Q~~gR~~R~Gq~~~v~ 77 (105)
.+||.++..+|.++++.|+. +...| |+++++++.|+|++.++.||++|. |+++..+.|++||++|.+ +-.
T Consensus 474 ~lh~~~~~~~R~~~l~~f~~-g~~~V-LVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~---~G~ 548 (661)
T 2d7d_A 474 YLHSEIKTLERIEIIRDLRL-GKYDV-LVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA---EGR 548 (661)
T ss_dssp EECTTCCHHHHHHHHHHHHH-TSCSE-EEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTST---TCE
T ss_pred EEeCCCCHHHHHHHHHHHhc-CCeEE-EEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCCC---CCE
Confidence 46899999999999999985 44666 455599999999999999999998 889999999999999973 344
Q ss_pred EEEEeeCCC
Q psy12190 78 IQYLVAKQT 86 (105)
Q Consensus 78 v~~l~~~~s 86 (105)
++.++.+.+
T Consensus 549 ~i~~~~~~~ 557 (661)
T 2d7d_A 549 VIMYADKIT 557 (661)
T ss_dssp EEEECSSCC
T ss_pred EEEEEeCCC
Confidence 555666554
No 55
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.85 E-value=4.1e-10 Score=86.34 Aligned_cols=81 Identities=17% Similarity=0.155 Sum_probs=66.2
Q ss_pred EEEECCCCHHHHHHHHHHhcc----CCCeeEEEEecccceecccccccCeeEEecC------------------CCCcCh
Q psy12190 2 IRIDGSVGSEERKSVVDQFQY----EDKFRVAVLSITAANSGITLTAANLVVFAEL------------------FWNPGI 59 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~----~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~------------------~wn~~~ 59 (105)
..+||+++.++|.++++.|.. .+..+| |+++++++.|+|++.+++||.+++ |.+...
T Consensus 342 ~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kV-lVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s 420 (773)
T 2xau_A 342 YPLYGSLPPHQQQRIFEPAPESHNGRPGRKV-VISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKAS 420 (773)
T ss_dssp EEECTTCCHHHHGGGGSCCCCCSSSSCCEEE-EEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHH
T ss_pred EEeCCCCCHHHHHHHHhhcccccCCCCceEE-EEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHH
Confidence 468999999999999999971 344666 566699999999999999999666 778889
Q ss_pred HhHHHHhhhccCCCCeEEEEEEeeCCC
Q psy12190 60 LTQAEDRAHRIGQQDSVLIQYLVAKQT 86 (105)
Q Consensus 60 ~~Q~~gR~~R~Gq~~~v~v~~l~~~~s 86 (105)
+.|+.||++|. ++-..|.|+++..
T Consensus 421 ~~QR~GRaGR~---~~G~~~~l~~~~~ 444 (773)
T 2xau_A 421 AQQRAGRAGRT---RPGKCFRLYTEEA 444 (773)
T ss_dssp HHHHHHGGGSS---SSEEEEESSCHHH
T ss_pred HHhhccccCCC---CCCEEEEEecHHH
Confidence 99999999998 4556777776543
No 56
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=98.85 E-value=5.2e-10 Score=80.71 Aligned_cols=63 Identities=16% Similarity=0.104 Sum_probs=44.7
Q ss_pred HHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEE-------------------ecCCCCcChHhHHHHhhhccC
Q psy12190 11 EERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVF-------------------AELFWNPGILTQAEDRAHRIG 71 (105)
Q Consensus 11 ~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~-------------------~~~~wn~~~~~Q~~gR~~R~G 71 (105)
++|.++++.|++ +...+ |+++.+++.|+|++ +++||+ +++|.++..+.|+.||++|.|
T Consensus 210 ~~R~~~~~~F~~-g~~~v-LVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g 286 (440)
T 1yks_A 210 KTFEREYPTIKQ-KKPDF-ILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNP 286 (440)
T ss_dssp SSCC---------CCCSE-EEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCT
T ss_pred hhHHHHHhhhcC-CCceE-EEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCC
Confidence 468889999985 44667 45669999999999 999985 888999999999999999985
Q ss_pred -CCCeE
Q psy12190 72 -QQDSV 76 (105)
Q Consensus 72 -q~~~v 76 (105)
+...+
T Consensus 287 ~~~g~~ 292 (440)
T 1yks_A 287 NRDGDS 292 (440)
T ss_dssp TCCCEE
T ss_pred CCCceE
Confidence 44333
No 57
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=98.82 E-value=2.7e-09 Score=84.08 Aligned_cols=46 Identities=13% Similarity=0.158 Sum_probs=32.7
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEe---cccceeccccccc-CeeEEecCC
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLS---ITAANSGITLTAA-NLVVFAELF 54 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s---~~~~~~Gl~l~~~-~~vi~~~~~ 54 (105)
.+||++ .++++.|+. +..+||+++ +++++.|+|++.+ ++||++++|
T Consensus 303 ~lhg~~-----~~~l~~F~~-G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 303 IVTATK-----KGDYEKFVE-GEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp ECTTSS-----SHHHHHHHH-TSCSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred EEeccH-----HHHHHHHHc-CCCcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 345655 478899985 456787774 7999999999996 999999999
No 58
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=98.77 E-value=2.6e-09 Score=80.89 Aligned_cols=69 Identities=10% Similarity=0.099 Sum_probs=54.4
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEE--------------------ecCCCCcChHhH
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVF--------------------AELFWNPGILTQ 62 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~--------------------~~~~wn~~~~~Q 62 (105)
.+|| ++|.++++.|++ +...|| +++.+++.|+|++ +++||+ +++|.++..+.|
T Consensus 439 ~lHg----~eR~~v~~~F~~-g~~~VL-VaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Q 511 (673)
T 2wv9_A 439 QLNR----KSYDTEYPKCKN-GDWDFV-ITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQ 511 (673)
T ss_dssp EECS----SSHHHHGGGGGT-CCCSEE-EECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHH
T ss_pred EeCh----HHHHHHHHHHHC-CCceEE-EECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHH
Confidence 4666 478999999985 456675 5559999999999 999997 567788899999
Q ss_pred HHHhhhcc-CCCCeEEE
Q psy12190 63 AEDRAHRI-GQQDSVLI 78 (105)
Q Consensus 63 ~~gR~~R~-Gq~~~v~v 78 (105)
++||++|. |+...+.+
T Consensus 512 r~GRaGR~~g~~G~ai~ 528 (673)
T 2wv9_A 512 RRGRVGRNPSQIGDEYH 528 (673)
T ss_dssp HHTTSSCCSSCCCEEEE
T ss_pred HhhccCCCCCCCCEEEE
Confidence 99999999 44444433
No 59
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=98.75 E-value=3.8e-09 Score=76.34 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=51.3
Q ss_pred HHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEec--------------------CCCCcChHhHHHHhhhccC
Q psy12190 12 ERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAE--------------------LFWNPGILTQAEDRAHRIG 71 (105)
Q Consensus 12 ~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~--------------------~~wn~~~~~Q~~gR~~R~G 71 (105)
.++++++.|++ +..++ |+++++++.|+|++. ++||.++ +|.+...+.|++||++|.|
T Consensus 222 ~~~~~~~~f~~-g~~~v-LVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g 298 (451)
T 2jlq_A 222 TFDTEYPKTKL-TDWDF-VVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNP 298 (451)
T ss_dssp THHHHGGGGGS-SCCSE-EEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCT
T ss_pred HHHHHHHhhcc-CCceE-EEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCC
Confidence 45678999984 45667 455699999999999 9999887 8889999999999999999
Q ss_pred C-CCeE
Q psy12190 72 Q-QDSV 76 (105)
Q Consensus 72 q-~~~v 76 (105)
. ...+
T Consensus 299 ~~~g~~ 304 (451)
T 2jlq_A 299 AQEDDQ 304 (451)
T ss_dssp TCCCEE
T ss_pred CCCccE
Confidence 7 3344
No 60
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=98.71 E-value=5.4e-09 Score=78.42 Aligned_cols=69 Identities=13% Similarity=0.127 Sum_probs=53.4
Q ss_pred HHHHHHHHHhccCCCeeEEEEecccceecccccccCee--------------------EEecCCCCcChHhHHHHhhhcc
Q psy12190 11 EERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLV--------------------VFAELFWNPGILTQAEDRAHRI 70 (105)
Q Consensus 11 ~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~v--------------------i~~~~~wn~~~~~Q~~gR~~R~ 70 (105)
++|.++++.|+++ ...+ |+++++++.|+|++ +++| +++++|-++..+.|++||++|.
T Consensus 388 ~~R~~~l~~F~~g-~~~V-LVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~ 464 (618)
T 2whx_A 388 KTFDTEYPKTKLT-DWDF-VVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRN 464 (618)
T ss_dssp TTHHHHTTHHHHS-CCSE-EEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCC
T ss_pred HHHHHHHHhhcCC-CcEE-EEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCC
Confidence 4788899999854 4666 55569999999997 8887 7777788888999999999999
Q ss_pred CCCCeEEEEEEee
Q psy12190 71 GQQDSVLIQYLVA 83 (105)
Q Consensus 71 Gq~~~v~v~~l~~ 83 (105)
|..... .+.|+.
T Consensus 465 g~~~G~-ai~l~~ 476 (618)
T 2whx_A 465 PAQEDD-QYVFSG 476 (618)
T ss_dssp TTCCCE-EEEECS
T ss_pred CCCCCe-EEEEcc
Confidence 864322 344454
No 61
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=98.70 E-value=3.4e-09 Score=76.82 Aligned_cols=70 Identities=11% Similarity=0.003 Sum_probs=51.0
Q ss_pred HHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEE--------------------ecCCCCcChHhHHHHhhhcc
Q psy12190 11 EERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVF--------------------AELFWNPGILTQAEDRAHRI 70 (105)
Q Consensus 11 ~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~--------------------~~~~wn~~~~~Q~~gR~~R~ 70 (105)
++|.++++.|++ +...| |+++++++.|+|++. ++||. +++|.++..+.|++||++|.
T Consensus 223 ~~R~~~~~~f~~-g~~~i-LVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~ 299 (459)
T 2z83_A 223 KSYDTEYPKCKN-GDWDF-VITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRN 299 (459)
T ss_dssp TCCCCCGGGSSS-CCCSE-EEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCC
T ss_pred HHHHHHHhhccC-CCceE-EEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCC
Confidence 367778888984 45666 556699999999999 99988 67999999999999999999
Q ss_pred CCCCeEEEEEEeeC
Q psy12190 71 GQQDSVLIQYLVAK 84 (105)
Q Consensus 71 Gq~~~v~v~~l~~~ 84 (105)
|... -..|.++..
T Consensus 300 g~~~-G~~~~~~~~ 312 (459)
T 2z83_A 300 PNQV-GDEYHYGGA 312 (459)
T ss_dssp TTCC-CEEEEECSC
T ss_pred CCCC-CeEEEEEcc
Confidence 9632 233344444
No 62
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=98.68 E-value=5.6e-09 Score=75.10 Aligned_cols=70 Identities=14% Similarity=0.171 Sum_probs=54.3
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCe-----------------eEEecCCCCcChHhHHHH
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANL-----------------VVFAELFWNPGILTQAED 65 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~-----------------vi~~~~~wn~~~~~Q~~g 65 (105)
.+||. +|.++++.|+++ ...+ |+++.+++.|+|++ ..+ +|+++.|.+...+.|+.|
T Consensus 200 ~lhg~----~r~~~~~~f~~g-~~~v-LVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~G 272 (431)
T 2v6i_A 200 YLNRK----TFESEYPKCKSE-KWDF-VITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRG 272 (431)
T ss_dssp EESTT----THHHHTTHHHHS-CCSE-EEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHT
T ss_pred EeCCc----cHHHHHHhhcCC-CCeE-EEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhh
Confidence 45664 678899999854 4666 45669999999999 544 577888899999999999
Q ss_pred hhhccCCCC-eEEEE
Q psy12190 66 RAHRIGQQD-SVLIQ 79 (105)
Q Consensus 66 R~~R~Gq~~-~v~v~ 79 (105)
|++|.|... .+.+|
T Consensus 273 R~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 273 RIGRNPEKLGDIYAY 287 (431)
T ss_dssp TSSCCTTCCCCEEEE
T ss_pred ccCCCCCCCCeEEEE
Confidence 999999643 44444
No 63
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.62 E-value=2.8e-08 Score=78.72 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=34.9
Q ss_pred HHHHHHHhccCCCeeEEEEe---cccceecccccc-cCeeEEecCCC
Q psy12190 13 RKSVVDQFQYEDKFRVAVLS---ITAANSGITLTA-ANLVVFAELFW 55 (105)
Q Consensus 13 r~~~~~~F~~~~~~~vll~s---~~~~~~Gl~l~~-~~~vi~~~~~w 55 (105)
|.+ ++.|++ +...+|+++ +++++.|+|+++ +++||++|+|-
T Consensus 344 rr~-l~~F~~-G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 344 EKN-FEDFKV-GKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HHH-HHHHHH-TSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred HHH-HHHHHC-CCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 555 999995 446787763 799999999999 99999999997
No 64
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=98.56 E-value=4.4e-08 Score=75.58 Aligned_cols=71 Identities=18% Similarity=0.113 Sum_probs=56.1
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceeccccc--------ccCeeEEecCCCCcChHhHHHHhhhccCCC
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLT--------AANLVVFAELFWNPGILTQAEDRAHRIGQQ 73 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~--------~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~ 73 (105)
..++|..+..+|..+...|+. ..|+ ++|+++|.|+|.. ...+||.+|.|-++..+.|++||++|.|.+
T Consensus 460 ~vLhg~~~~rEr~ii~~ag~~---g~Vl-IATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~ 535 (844)
T 1tf5_A 460 QVLNAKNHEREAQIIEEAGQK---GAVT-IATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDP 535 (844)
T ss_dssp EEECSSCHHHHHHHHTTTTST---TCEE-EEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCC
T ss_pred EEeeCCccHHHHHHHHHcCCC---CeEE-EeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCC
Confidence 357888876676655445542 2464 4559999999999 788999999999999999999999999976
Q ss_pred CeE
Q psy12190 74 DSV 76 (105)
Q Consensus 74 ~~v 76 (105)
-..
T Consensus 536 G~s 538 (844)
T 1tf5_A 536 GIT 538 (844)
T ss_dssp EEE
T ss_pred CeE
Confidence 544
No 65
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.50 E-value=1.6e-07 Score=77.17 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=63.8
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEE----ec------CCCCcChHhHHHHhhhccCC
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVF----AE------LFWNPGILTQAEDRAHRIGQ 72 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~----~~------~~wn~~~~~Q~~gR~~R~Gq 72 (105)
..||++++++|..+.+.|.+ +..+||+++ ..++.|+|++....||. ++ .+.++..+.|++||++|.|.
T Consensus 1218 ~hHagL~~~~R~~VE~lF~~-G~i~VLvaT-~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~ 1295 (1724)
T 4f92_B 1218 YLHEGLSPMERRLVEQLFSS-GAIQVVVAS-RSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQ 1295 (1724)
T ss_dssp EECTTSCHHHHHHHHHHHHH-TSBCEEEEE-GGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTT
T ss_pred EECCCCCHHHHHHHHHHHHC-CCCeEEEEC-hHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCC
Confidence 47899999999999999995 557886555 89999999997666652 22 23567789999999999998
Q ss_pred CCeEEEEEEeeCC
Q psy12190 73 QDSVLIQYLVAKQ 85 (105)
Q Consensus 73 ~~~v~v~~l~~~~ 85 (105)
...-.++.++...
T Consensus 1296 d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1296 DDEGRCVIMCQGS 1308 (1724)
T ss_dssp CSCEEEEEEEEGG
T ss_pred CCceEEEEEecch
Confidence 8777777666543
No 66
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.49 E-value=1.1e-07 Score=78.09 Aligned_cols=84 Identities=15% Similarity=0.069 Sum_probs=66.5
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEE----ecCC------CCcChHhHHHHhhhccCC
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVF----AELF------WNPGILTQAEDRAHRIGQ 72 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~----~~~~------wn~~~~~Q~~gR~~R~Gq 72 (105)
..||+++.++|..+-+.|++ +..+|+ ++|.+++.|+||+....||. +++. .++..+.|++||++|.|.
T Consensus 383 ~HHagL~~~~R~~vE~~F~~-G~i~vl-vaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~ 460 (1724)
T 4f92_B 383 IHHAGMTRVDRTLVEDLFAD-KHIQVL-VSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQY 460 (1724)
T ss_dssp EECSSSCTHHHHHHHHHHHT-TCCCEE-EECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTT
T ss_pred EEcCCCCHHHHHHHHHHHHC-CCCeEE-EEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCC
Confidence 45899999999999999994 567785 45599999999998877763 4443 467789999999999998
Q ss_pred CCeEEEEEEeeCCCHH
Q psy12190 73 QDSVLIQYLVAKQTAD 88 (105)
Q Consensus 73 ~~~v~v~~l~~~~s~d 88 (105)
...-..+.+...+..+
T Consensus 461 d~~G~~ii~~~~~~~~ 476 (1724)
T 4f92_B 461 DTKGEGILITSHGELQ 476 (1724)
T ss_dssp CSCEEEEEEEESTTCC
T ss_pred CCccEEEEEecchhHH
Confidence 7777777777665443
No 67
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.45 E-value=2.7e-07 Score=70.66 Aligned_cols=72 Identities=18% Similarity=0.169 Sum_probs=53.4
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceeccccc--------ccCeeEEecCCCCcChHhHHHHhhhccCCCC
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLT--------AANLVVFAELFWNPGILTQAEDRAHRIGQQD 74 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~--------~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~ 74 (105)
.++|.....++..+...|+. + .| +++|+++|.|+|.. ...+||.+++|-++..+.|++||++|.|.+-
T Consensus 503 vLhgkq~~rE~~ii~~ag~~-g--~V-tVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G 578 (822)
T 3jux_A 503 VLNAKYHEKEAEIVAKAGQK-G--MV-TIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPG 578 (822)
T ss_dssp EECSCHHHHHHHHHHHHHST-T--CE-EEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCC
T ss_pred EeeCCchHHHHHHHHhCCCC-C--eE-EEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCe
Confidence 46777444444444445542 2 45 45559999999997 6679999999999999999999999999775
Q ss_pred eEEE
Q psy12190 75 SVLI 78 (105)
Q Consensus 75 ~v~v 78 (105)
....
T Consensus 579 ~a~~ 582 (822)
T 3jux_A 579 ESIF 582 (822)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 5433
No 68
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=98.38 E-value=1.8e-07 Score=70.80 Aligned_cols=71 Identities=15% Similarity=0.052 Sum_probs=52.0
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeE----------Eec-----------CCCCcChH
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVV----------FAE-----------LFWNPGIL 60 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi----------~~~-----------~~wn~~~~ 60 (105)
..+||+++.++ |.+++ .+| |+++++++.|+|+. ++.|| ++| .|-+...+
T Consensus 424 ~~lHG~l~q~e-------r~~~~-~~V-LVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~sy 493 (666)
T 3o8b_A 424 VAYYRGLDVSV-------IPTIG-DVV-VVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSR 493 (666)
T ss_dssp EEECTTSCGGG-------SCSSS-CEE-EEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHH
T ss_pred EEecCCCCHHH-------HHhCC-CcE-EEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHH
Confidence 35789988764 44333 355 56669999999986 99888 455 67788899
Q ss_pred hHHHHhhhccCCCCeEEEEEEeeCCC
Q psy12190 61 TQAEDRAHRIGQQDSVLIQYLVAKQT 86 (105)
Q Consensus 61 ~Q~~gR~~R~Gq~~~v~v~~l~~~~s 86 (105)
.|++||++| |.... |.|+.+..
T Consensus 494 iQRiGRtGR-g~~G~---i~lvt~~e 515 (666)
T 3o8b_A 494 SQRRGRTGR-GRRGI---YRFVTPGE 515 (666)
T ss_dssp HHHHTTBCS-SSCEE---EEESCCCC
T ss_pred HHHhccCCC-CCCCE---EEEEecch
Confidence 999999999 65433 67776543
No 69
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.31 E-value=1.9e-06 Score=68.04 Aligned_cols=69 Identities=13% Similarity=0.081 Sum_probs=57.1
Q ss_pred HHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCC--CeEEEEEEee
Q psy12190 12 ERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQ--DSVLIQYLVA 83 (105)
Q Consensus 12 ~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~--~~v~v~~l~~ 83 (105)
+|..++++|++ +...+||+ +++..+|+|.+.+ +++++|.|.+...+.|++||+.|.+.. ....|..++.
T Consensus 637 ~R~~i~~~Fk~-g~i~ILIv-vd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 637 YYRDLAQRVKN-QDIDLLIV-VGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHHHHHHHHHT-TSSSEEEE-SSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred HHHHHHHHHHc-CCCeEEEE-cchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 48889999995 55777555 5999999999999 678899999999999999999999874 4467777763
No 70
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=98.30 E-value=4.9e-07 Score=69.81 Aligned_cols=72 Identities=17% Similarity=0.123 Sum_probs=56.2
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceeccccccc-------------------------------------
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAA------------------------------------- 45 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~------------------------------------- 45 (105)
.++|.....++..+.+.|+. + .|+ ++|+++|.|+|....
T Consensus 470 vLnak~~~rEa~iia~agr~-G--~Vt-IATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 545 (853)
T 2fsf_A 470 VLNAKFHANEAAIVAQAGYP-A--AVT-IATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGG 545 (853)
T ss_dssp ECCTTCHHHHHHHHHTTTST-T--CEE-EEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred EecCChhHHHHHHHHhcCCC-C--eEE-EecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCC
Confidence 46777766667666677763 3 454 555999999999853
Q ss_pred CeeEEecCCCCcChHhHHHHhhhccCCCCeEEE
Q psy12190 46 NLVVFAELFWNPGILTQAEDRAHRIGQQDSVLI 78 (105)
Q Consensus 46 ~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v 78 (105)
.|||.++.|-++..+.|++||++|.|.+-....
T Consensus 546 l~VI~te~pes~riy~qr~GRTGRqGd~G~s~~ 578 (853)
T 2fsf_A 546 LHIIGTERHESRRIDNQLRGRSGRQGDAGSSRF 578 (853)
T ss_dssp EEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEE
T ss_pred cEEEEccCCCCHHHHHhhccccccCCCCeeEEE
Confidence 599999999999999999999999997654433
No 71
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=98.20 E-value=1.6e-06 Score=67.33 Aligned_cols=72 Identities=15% Similarity=0.094 Sum_probs=55.3
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCeeEEEEecccceeccccccc------------------------------------
Q psy12190 2 IRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAA------------------------------------ 45 (105)
Q Consensus 2 ~~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~------------------------------------ 45 (105)
..++|.....++..+.+.|+. + .|+ ++|+++|.|+|....
T Consensus 488 ~vLnak~~~rEa~iia~agr~-G--~Vt-IATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (922)
T 1nkt_A 488 NVLNAKYHEQEATIIAVAGRR-G--GVT-VATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIV 563 (922)
T ss_dssp EEECSSCHHHHHHHHHTTTST-T--CEE-EEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHH
T ss_pred EEecCChhHHHHHHHHhcCCC-C--eEE-EecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHH
Confidence 357787765666556666653 2 454 555999999999853
Q ss_pred ----------------CeeEEecCCCCcChHhHHHHhhhccCCCCeEE
Q psy12190 46 ----------------NLVVFAELFWNPGILTQAEDRAHRIGQQDSVL 77 (105)
Q Consensus 46 ----------------~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~ 77 (105)
.|||.++.|-++..+.|++||++|.|..-...
T Consensus 564 ~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~ 611 (922)
T 1nkt_A 564 KEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESR 611 (922)
T ss_dssp HHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEE
T ss_pred HHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEE
Confidence 59999999999999999999999999765443
No 72
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.01 E-value=0.0019 Score=47.60 Aligned_cols=64 Identities=16% Similarity=0.198 Sum_probs=37.0
Q ss_pred HHHHHHHHHhccCCCeeEEEE-ecccceecccccc----cCeeEEecCCCCcC---------------------------
Q psy12190 11 EERKSVVDQFQYEDKFRVAVL-SITAANSGITLTA----ANLVVFAELFWNPG--------------------------- 58 (105)
Q Consensus 11 ~~r~~~~~~F~~~~~~~vll~-s~~~~~~Gl~l~~----~~~vi~~~~~wn~~--------------------------- 58 (105)
.+|.++++.|+.++ .++++ .+....+|+|++. +..||+..+|+.+.
T Consensus 416 ~~~~~~l~~f~~~~--~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~ 493 (540)
T 2vl7_A 416 TRHEEVLELMKTGK--YLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDL 493 (540)
T ss_dssp CCHHHHHHHHHTSC--CEEEEEC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CcHHHHHHHHhcCC--eEEEEEecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHH
Confidence 46889999998643 34442 4589999999996 88999999997544
Q ss_pred ---hHhHHHHhhhccCCCCeE
Q psy12190 59 ---ILTQAEDRAHRIGQQDSV 76 (105)
Q Consensus 59 ---~~~Q~~gR~~R~Gq~~~v 76 (105)
...|++||+-|.-...-+
T Consensus 494 ~~~~~~Q~~GR~iR~~~D~g~ 514 (540)
T 2vl7_A 494 TAIVIKQTIGRAFRDPNDYVK 514 (540)
T ss_dssp HHHHHHHHHHHHCCSTTCCCE
T ss_pred HHHHHHHHhCCcccCCCccEE
Confidence 123899999988665544
No 73
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=95.68 E-value=0.04 Score=41.37 Aligned_cols=68 Identities=15% Similarity=0.219 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHhccCCCeeEEEEec-ccceeccccc--ccCeeEEecCCCCcCh--------------------------
Q psy12190 9 GSEERKSVVDQFQYEDKFRVAVLSI-TAANSGITLT--AANLVVFAELFWNPGI-------------------------- 59 (105)
Q Consensus 9 ~~~~r~~~~~~F~~~~~~~vll~s~-~~~~~Gl~l~--~~~~vi~~~~~wn~~~-------------------------- 59 (105)
+..++.+++++|. + ...||++.. .+..+|+|++ .+..||+...|+-+..
T Consensus 480 ~~~~~~~ll~~f~-~-~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa 557 (620)
T 4a15_A 480 DQKELYSMLKKFR-R-DHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPT 557 (620)
T ss_dssp CSHHHHHHHHHHT-T-SCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHH
T ss_pred ChhHHHHHHHHhc-c-CCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHH
Confidence 3567999999999 3 345666552 4889999999 6788899888864310
Q ss_pred ---HhHHHHhhhccCCCCeEEE
Q psy12190 60 ---LTQAEDRAHRIGQQDSVLI 78 (105)
Q Consensus 60 ---~~Q~~gR~~R~Gq~~~v~v 78 (105)
..|++||+-|.-+.+-+.+
T Consensus 558 ~~~l~Qa~GRlIR~~~D~G~v~ 579 (620)
T 4a15_A 558 AIKIRQEIGRLIRSAEDTGACV 579 (620)
T ss_dssp HHHHHHHHHTTCCSTTCCEEEE
T ss_pred HHHHHHHhCccccCCCceEEEE
Confidence 1389999988776655433
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=83.48 E-value=1.3 Score=35.23 Aligned_cols=34 Identities=21% Similarity=0.134 Sum_probs=29.2
Q ss_pred eeEEecCCCCcChHhHHHHhhhccCCCCeEEEEE
Q psy12190 47 LVVFAELFWNPGILTQAEDRAHRIGQQDSVLIQY 80 (105)
Q Consensus 47 ~vi~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~ 80 (105)
|||-.+.+-+.....|..||++|.|..-.-.+|-
T Consensus 662 hVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~L 695 (997)
T 2ipc_A 662 FIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYV 695 (997)
T ss_dssp CEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEE
T ss_pred EEEeccCCchHHHHHHHhcccccCCCCCCeEEEE
Confidence 7888888888999999999999999887766554
No 75
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=79.47 E-value=4.1 Score=29.89 Aligned_cols=43 Identities=14% Similarity=0.078 Sum_probs=30.6
Q ss_pred HHHHHHHhccCCCeeEEEEec-ccceeccccc-----ccCeeEEecCCCC
Q psy12190 13 RKSVVDQFQYEDKFRVAVLSI-TAANSGITLT-----AANLVVFAELFWN 56 (105)
Q Consensus 13 r~~~~~~F~~~~~~~vll~s~-~~~~~Gl~l~-----~~~~vi~~~~~wn 56 (105)
+...++.|+..++ .||++.. ....+|+|++ .+..||+..+|+-
T Consensus 426 ~~~~~~~~~~~~~-~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp 474 (551)
T 3crv_A 426 VEDLYSAISANNK-VLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYP 474 (551)
T ss_dssp HHHHHHHTTSSSS-CEEEEESSCCSCCSSCCEETTEESEEEEEEESCCCC
T ss_pred HHHHHHHHHhcCC-eEEEEEecceecccccccccCCcceeEEEEEcCCCC
Confidence 4567888864443 4655553 5889999999 4788888887763
No 76
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=63.91 E-value=20 Score=24.43 Aligned_cols=84 Identities=12% Similarity=0.080 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhccCCCeeEEEEecccceeccc--cc--ccCeeEEecCCCCc-ChHhH---HHHhhhccCCCCeEEEEEE
Q psy12190 10 SEERKSVVDQFQYEDKFRVAVLSITAANSGIT--LT--AANLVVFAELFWNP-GILTQ---AEDRAHRIGQQDSVLIQYL 81 (105)
Q Consensus 10 ~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~--l~--~~~~vi~~~~~wn~-~~~~Q---~~gR~~R~Gq~~~v~v~~l 81 (105)
++....+-+.+...+.+ -+...++. .++. ++ .-..+||+|||+.. ..+.+ .+...++.-.+-.+-|++.
T Consensus 123 ~~a~~~L~~Nl~~~~~~--~V~~~D~~-~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYP 199 (283)
T 2oo3_A 123 PTEYNFLLKLPHFNKKV--YVNHTDGV-SKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYP 199 (283)
T ss_dssp HHHHHHHTTSCCTTSCE--EEECSCHH-HHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred HHHHHHHHHHhCcCCcE--EEEeCcHH-HHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEe
Confidence 44444555555543333 34444432 2222 12 24789999999984 55554 4455555566778888888
Q ss_pred eeCCCHHHHHHHHHH
Q psy12190 82 VAKQTADDYLWPLVM 96 (105)
Q Consensus 82 ~~~~s~d~~i~~~~~ 96 (105)
+....--+.+.+.++
T Consensus 200 i~~~~~~~~~~~~l~ 214 (283)
T 2oo3_A 200 VVNKAWTEQFLRKMR 214 (283)
T ss_dssp ESSHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHH
Confidence 866443345555443
No 77
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=47.03 E-value=22 Score=19.40 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHhccCCC-eeEEEEecccceecccccccCee
Q psy12190 7 SVGSEERKSVVDQFQYEDK-FRVAVLSITAANSGITLTAANLV 48 (105)
Q Consensus 7 ~~~~~~r~~~~~~F~~~~~-~~vll~s~~~~~~Gl~l~~~~~v 48 (105)
-++.++.++++++++-..+ ..- +..++....-+.+...+.|
T Consensus 14 iLs~eEk~~lL~~y~i~~~qLPr-I~~~DPvar~~G~k~GdVv 55 (78)
T 1hmj_A 14 IVPKEEVEEILKRYNIKIQQLPK-IYEDDPVIQEIGAKEGDVV 55 (78)
T ss_pred ECCHHHHHHHHHHcCCCHHHCCe-eeCcCHhhHHhCCCCCCEE
Confidence 4688999999999984332 222 3445666666666666555
No 78
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=46.83 E-value=24 Score=27.38 Aligned_cols=50 Identities=12% Similarity=0.235 Sum_probs=35.8
Q ss_pred EEECCCCHHHHHHHHHHhccCCCeeEEEEecccceecccccccCeeEEecC
Q psy12190 3 RIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAEL 53 (105)
Q Consensus 3 ~~~g~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gl~l~~~~~vi~~~~ 53 (105)
.++|+++..++...++.... +.+.+++++.......+.+.+...+|+=|-
T Consensus 450 ~l~G~~~~~~r~~~~~~l~~-g~~~IvVgT~~ll~~~~~~~~l~lVVIDEa 499 (780)
T 1gm5_A 450 LLIGATTPSEKEKIKSGLRN-GQIDVVIGTHALIQEDVHFKNLGLVIIDEQ 499 (780)
T ss_dssp ECCSSSCHHHHHHHHHHHHS-SCCCEEEECTTHHHHCCCCSCCCEEEEESC
T ss_pred EEeCCCCHHHHHHHHHHHhc-CCCCEEEECHHHHhhhhhccCCceEEeccc
Confidence 46899999999988888874 446788888776655566666665555443
No 79
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=39.66 E-value=24 Score=19.47 Aligned_cols=63 Identities=11% Similarity=0.161 Sum_probs=35.9
Q ss_pred ECCCCHHHHHHHHHHhccCCC-eeEEEEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccCCC-CeEEEEEEe
Q psy12190 5 DGSVGSEERKSVVDQFQYEDK-FRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQ-DSVLIQYLV 82 (105)
Q Consensus 5 ~g~~~~~~r~~~~~~F~~~~~-~~vll~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~Gq~-~~v~v~~l~ 82 (105)
|--++.++.+++++.|+-..+ ... |..++..+.-+++...+.| ++.|...+ .....||++
T Consensus 20 H~vLs~eE~~~ll~~y~i~~~qLP~-I~~~DPva~~~g~k~GdVv-----------------kI~R~S~tag~~~~YR~v 81 (84)
T 4ayb_H 20 HEVLSIDEAYKILKELGIRPEQLPW-IRASDPVARSINAKPGDII-----------------RIIRKSQLYGEVVSYRYV 81 (84)
T ss_dssp EEECCHHHHHHHHHHHTCCGGGSCC-EESSSHHHHHHTCCTTCEE-----------------EEEEEETTTEEEEEEEEE
T ss_pred eEECCHHHHHHHHHHhcCCHhHCCe-ecccCHhHHhhCCCCCCEE-----------------EEEEcCCCCCccEEEEEE
Confidence 344688999999999974322 222 3344655555555444433 44555444 345677777
Q ss_pred eCC
Q psy12190 83 AKQ 85 (105)
Q Consensus 83 ~~~ 85 (105)
..|
T Consensus 82 v~g 84 (84)
T 4ayb_H 82 ISG 84 (84)
T ss_dssp EC-
T ss_pred eCC
Confidence 654
No 80
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=37.93 E-value=11 Score=21.18 Aligned_cols=18 Identities=22% Similarity=0.569 Sum_probs=15.8
Q ss_pred CCCCHHHHHHHHHHhccC
Q psy12190 6 GSVGSEERKSVVDQFQYE 23 (105)
Q Consensus 6 g~~~~~~r~~~~~~F~~~ 23 (105)
++++.++|+++++.|+.+
T Consensus 59 ~~lt~~ek~elieeFn~G 76 (90)
T 1jr5_A 59 SELTQEDKKTLIDEFNEG 76 (90)
T ss_dssp HTCCHHHHHHHHTTSSSS
T ss_pred HHCCHHHHHHHHHHHhcc
Confidence 568999999999999864
No 81
>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.1.19.4
Probab=36.24 E-value=57 Score=23.98 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=29.6
Q ss_pred HHHHhhhccCCCCeEEEEEEeeCCCHHHHHHHHHHh
Q psy12190 62 QAEDRAHRIGQQDSVLIQYLVAKQTADDYLWPLVMT 97 (105)
Q Consensus 62 Q~~gR~~R~Gq~~~v~v~~l~~~~s~d~~i~~~~~~ 97 (105)
+|..-+-++|......+|..++.|.++|.+.+....
T Consensus 137 ~Re~~~~~~g~~~~p~iy~ivAtG~i~eDi~qa~aA 172 (516)
T 1xrs_A 137 IRESRFEEYGDKSGPLLYVIVATGNIYEDITQAVAA 172 (516)
T ss_dssp HHHHHHHHHCCCSSCEEEEEECCSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEEEecCchHHHHHHHHHH
Confidence 344446778999999999999999999999887654
No 82
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=34.94 E-value=54 Score=20.57 Aligned_cols=39 Identities=26% Similarity=0.315 Sum_probs=29.3
Q ss_pred ccccCeeEEecCCCCcCh---HhHHHHhhhccCCC----CeEEEEE
Q psy12190 42 LTAANLVVFAELFWNPGI---LTQAEDRAHRIGQQ----DSVLIQY 80 (105)
Q Consensus 42 l~~~~~vi~~~~~wn~~~---~~Q~~gR~~R~Gq~----~~v~v~~ 80 (105)
+..|+.+|+..|.||.+. ....+.|+.|.|.. |++-+.-
T Consensus 71 i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~ 116 (199)
T 4hs4_A 71 IATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVT 116 (199)
T ss_dssp HHHSSEEEEEECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEE
T ss_pred HHhCCEEEEEcCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEE
Confidence 568999999999998876 56788999886532 5655543
No 83
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=29.21 E-value=85 Score=18.97 Aligned_cols=31 Identities=32% Similarity=0.403 Sum_probs=22.8
Q ss_pred cccccCeeEEecCCCCcCh---HhHHHHhhhccC
Q psy12190 41 TLTAANLVVFAELFWNPGI---LTQAEDRAHRIG 71 (105)
Q Consensus 41 ~l~~~~~vi~~~~~wn~~~---~~Q~~gR~~R~G 71 (105)
.+..|+.+|+..|.|+.+. ....+.|+.+.|
T Consensus 83 ~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~ 116 (201)
T 1t5b_A 83 ELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAG 116 (201)
T ss_dssp HHHHCSEEEEECCCBTTBCCHHHHHHHHHHCCBT
T ss_pred HHHhCCEEEEEeCcccCcCCHHHHHHHHHheeCC
Confidence 3568999999999998654 445677777643
No 84
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=28.90 E-value=1.4e+02 Score=20.84 Aligned_cols=86 Identities=7% Similarity=0.017 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHhcc--CCCeeEEEEecc-cceeccccc------ccCeeEEecCCCCcChHhH---HHHhhhccCCCCe
Q psy12190 8 VGSEERKSVVDQFQY--EDKFRVAVLSIT-AANSGITLT------AANLVVFAELFWNPGILTQ---AEDRAHRIGQQDS 75 (105)
Q Consensus 8 ~~~~~r~~~~~~F~~--~~~~~vll~s~~-~~~~Gl~l~------~~~~vi~~~~~wn~~~~~Q---~~gR~~R~Gq~~~ 75 (105)
++.+||.++++...+ .+.+.|+..... .-.+.+.+. .|+-+..+-|.|++...+. ....+.. .-+
T Consensus 109 Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlvv~PyY~k~sq~gl~~hf~~IA~---a~P 185 (360)
T 4dpp_A 109 MSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSIEGLIAHFQSVLH---MGP 185 (360)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHTTGG---GSC
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHH---hCC
Confidence 678999998887643 455666543321 222333332 4778888888887765442 2233332 248
Q ss_pred EEEEEEe--eCCCHHHHHHHHHH
Q psy12190 76 VLIQYLV--AKQTADDYLWPLVM 96 (105)
Q Consensus 76 v~v~~l~--~~~s~d~~i~~~~~ 96 (105)
+.+|.+- +.-.+....+..+.
T Consensus 186 iilYNiP~rTg~~ls~e~l~~La 208 (360)
T 4dpp_A 186 TIIYNVPGRTGQDIPPRAIFKLS 208 (360)
T ss_dssp EEEEECHHHHSCCCCHHHHHHHT
T ss_pred EEEEeCCcccCCCCCHHHHHHHh
Confidence 8888764 33345544544443
No 85
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=28.06 E-value=53 Score=17.87 Aligned_cols=17 Identities=12% Similarity=-0.103 Sum_probs=7.1
Q ss_pred cCCCCcChHhHHHHhhh
Q psy12190 52 ELFWNPGILTQAEDRAH 68 (105)
Q Consensus 52 ~~~wn~~~~~Q~~gR~~ 68 (105)
.-|.++....+++.+.+
T Consensus 104 ~KP~~~~~L~~~i~~~~ 120 (127)
T 3i42_A 104 EKPIDIASLEPILQSIE 120 (127)
T ss_dssp ESSCCHHHHHHHHHHHC
T ss_pred eCCCCHHHHHHHHHHhh
Confidence 33444444444444433
No 86
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=27.50 E-value=89 Score=19.38 Aligned_cols=38 Identities=34% Similarity=0.380 Sum_probs=27.9
Q ss_pred ccccCeeEEecCCCCcCh---HhHHHHhhhccCCC----CeEEEE
Q psy12190 42 LTAANLVVFAELFWNPGI---LTQAEDRAHRIGQQ----DSVLIQ 79 (105)
Q Consensus 42 l~~~~~vi~~~~~wn~~~---~~Q~~gR~~R~Gq~----~~v~v~ 79 (105)
+..|+.+|+..|.||.+. ....+.|+.|.|.. |++-+.
T Consensus 70 i~~AD~iv~~sP~y~~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~ 114 (193)
T 3svl_A 70 IRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQ 114 (193)
T ss_dssp HHHSSEEEEEECCBTTBCCHHHHHHHHHHHTSTTCTTTTCEEEEE
T ss_pred HHHCCEEEEEecccCCCCCHHHHHHHHHHhhcCccccCCCeEEEE
Confidence 448899999999998766 55788898886532 555544
No 87
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=26.44 E-value=41 Score=14.59 Aligned_cols=17 Identities=29% Similarity=0.227 Sum_probs=11.8
Q ss_pred CHHHHHHHHHHhhhhcC
Q psy12190 86 TADDYLWPLVMTKLDVP 102 (105)
Q Consensus 86 s~d~~i~~~~~~K~~~~ 102 (105)
|.+|+...++++|..++
T Consensus 2 s~~eRq~~Lq~Rk~~mi 18 (28)
T 3h8k_B 2 SADERQRMLVQRKDELL 18 (28)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 55677777777777654
No 88
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=26.12 E-value=26 Score=22.06 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=21.1
Q ss_pred cccccCeeEEecCCCCcChH---hHHHHhhhc
Q psy12190 41 TLTAANLVVFAELFWNPGIL---TQAEDRAHR 69 (105)
Q Consensus 41 ~l~~~~~vi~~~~~wn~~~~---~Q~~gR~~R 69 (105)
.+..|+.+|+..|.|+.+.. ...+.|+.+
T Consensus 67 ~l~~AD~iV~~~P~y~~s~pa~LK~~iDrv~~ 98 (204)
T 2amj_A 67 NFLWADVVIWQMPGWWMGAPWTVKKYIDDVFT 98 (204)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHHH
T ss_pred HHHhCCEEEEECCccccCCCHHHHHHHHHHhh
Confidence 45689999999999986544 456676643
No 89
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=23.90 E-value=37 Score=21.44 Aligned_cols=30 Identities=33% Similarity=0.421 Sum_probs=22.7
Q ss_pred ccccCeeEEecCCCCcChH---hHHHHhhhccC
Q psy12190 42 LTAANLVVFAELFWNPGIL---TQAEDRAHRIG 71 (105)
Q Consensus 42 l~~~~~vi~~~~~wn~~~~---~Q~~gR~~R~G 71 (105)
+..|+.+|+..|.||.+.- ...+.|+.+.|
T Consensus 90 ~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~ 122 (211)
T 3p0r_A 90 FLEADKVVFGFPLWNLTIPAVLHTYIDYLNRAG 122 (211)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBT
T ss_pred HHhCCEEEEEcChhcccCCHHHHHHHHHHhccC
Confidence 5578999999999986544 46777776654
No 90
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}
Probab=23.58 E-value=76 Score=21.01 Aligned_cols=33 Identities=15% Similarity=0.047 Sum_probs=21.2
Q ss_pred HHHHHHHhccCCCeeEEEEec--------ccceeccccccc
Q psy12190 13 RKSVVDQFQYEDKFRVAVLSI--------TAANSGITLTAA 45 (105)
Q Consensus 13 r~~~~~~F~~~~~~~vll~s~--------~~~~~Gl~l~~~ 45 (105)
-...++....+++++++|++. +..+.|.||...
T Consensus 42 L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~ 82 (275)
T 4eml_A 42 LYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVR 82 (275)
T ss_dssp HHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC--
T ss_pred HHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhh
Confidence 344555566677788887775 356678888743
No 91
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=23.15 E-value=39 Score=20.89 Aligned_cols=30 Identities=30% Similarity=0.457 Sum_probs=22.8
Q ss_pred ccccCeeEEecCCCCcCh---HhHHHHhhhccC
Q psy12190 42 LTAANLVVFAELFWNPGI---LTQAEDRAHRIG 71 (105)
Q Consensus 42 l~~~~~vi~~~~~wn~~~---~~Q~~gR~~R~G 71 (105)
+..|+.+|+..|.|+.+. ....+.|+.+.|
T Consensus 92 l~~aD~iv~~~P~y~~~~pa~lK~~iD~~~~~g 124 (208)
T 2hpv_A 92 FLSADKVVIANPMWNLNVPTRLKAWVDTINVAG 124 (208)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBT
T ss_pred HHhCCEEEEEeccccCCCCHHHHHHHHHHhcCC
Confidence 668999999999998554 445677877644
No 92
>2eoc_A Poly [ADP-ribose] polymerase 3; anti-parallel beta-sheet, cell cycle control, DNA damage, transcription, NAD+, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.70 E-value=52 Score=19.26 Aligned_cols=39 Identities=10% Similarity=-0.117 Sum_probs=22.9
Q ss_pred EecCCCCcChHhHHHHhhhccCCCCeEEEEEEeeCCCHHHHHHHH
Q psy12190 50 FAELFWNPGILTQAEDRAHRIGQQDSVLIQYLVAKQTADDYLWPL 94 (105)
Q Consensus 50 ~~~~~wn~~~~~Q~~gR~~R~Gq~~~v~v~~l~~~~s~d~~i~~~ 94 (105)
+++.....-....++||++..||.+-. .+ ++.++.+...
T Consensus 54 ll~~~~g~~~v~~~WGRIG~~Gq~~~~---~~---~s~~~A~~~F 92 (124)
T 2eoc_A 54 LLQDSNRFFTCWNRWGRVGEVGQSKIN---HF---TRLEDAKKDF 92 (124)
T ss_dssp EEECTTSCEEEEEECSCTTSCCCCEEE---EE---SSHHHHHHHH
T ss_pred EEecCCceEEEEEEECCCCCCCceEee---cC---CCHHHHHHHH
Confidence 333333333445889999988887632 12 4666665544
No 93
>3op0_A Signal transduction protein CBL-C; structural genomics, structural genomics consortium, SGC, SI transduction protein, SH3-binding protein; HET: PTR; 2.52A {Homo sapiens}
Probab=20.10 E-value=2.3e+02 Score=19.69 Aligned_cols=67 Identities=7% Similarity=-0.030 Sum_probs=51.0
Q ss_pred EECCCCHHHHHHHHHHhccCCCeeEE-EEecccceecccccccCeeEEecCCCCcChHhHHHHhhhccC
Q psy12190 4 IDGSVGSEERKSVVDQFQYEDKFRVA-VLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIG 71 (105)
Q Consensus 4 ~~g~~~~~~r~~~~~~F~~~~~~~vl-l~s~~~~~~Gl~l~~~~~vi~~~~~wn~~~~~Q~~gR~~R~G 71 (105)
+.|-++-++-.+.++.+.+.++..++ +.+++.|.-.|.....+--|.-..|-|.+.+ |+.=-..|-|
T Consensus 231 y~aFlTydEV~~~L~~~~~KpGsYIfR~ScTrlGqwAIgYV~s~g~I~qtip~nk~l~-qaL~dG~~eg 298 (323)
T 3op0_A 231 YMAFLTYDEVQERLQACRDKPGSYIFRPSCTRLGQWAIGYVSSDGSILQTIPANKPLS-QVLLEGQKDG 298 (323)
T ss_dssp BCTTCCHHHHHHHTTGGGGSTTEEEEEECSSSTTCEEEEEECTTSCEEEECCCSSCHH-HHHHHHHHTT
T ss_pred eeeeeeHHHHHHHHHHhccCCCcEEEEeccCccCceEEEEEcCCCceeecCCCCcHHH-HHHHhccccc
Confidence 34678888999999999887777777 6667889999998877777777777676655 7766666655
No 94
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=20.07 E-value=89 Score=18.89 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=26.1
Q ss_pred cccccCeeEEecCCCCcChHhH---HHHhhhccCCCCeEEEE
Q psy12190 41 TLTAANLVVFAELFWNPGILTQ---AEDRAHRIGQQDSVLIQ 79 (105)
Q Consensus 41 ~l~~~~~vi~~~~~wn~~~~~Q---~~gR~~R~Gq~~~v~v~ 79 (105)
.+..|+.+|+..|.|+.+...+ .+.|+.+.-..|++.++
T Consensus 81 ~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~~l~gK~~~~~ 122 (191)
T 1t0i_A 81 IVNALDIIVFVTPQYNWGYPAALKNAIDRLYHEWHGKPALVV 122 (191)
T ss_dssp HHHTCSEEEEEEECBTTBCCHHHHHHHHTCSTTTTTCEEEEE
T ss_pred HHHhCCEEEEEeceECCCCCHHHHHHHHHHHhhcCCCEEEEE
Confidence 3568999999999998765554 45555433344666655
No 95
>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*
Probab=20.03 E-value=1.1e+02 Score=19.84 Aligned_cols=31 Identities=10% Similarity=0.225 Sum_probs=20.7
Q ss_pred HHHHHHHhccCCCeeEEEEec----ccceecccccc
Q psy12190 13 RKSVVDQFQYEDKFRVAVLSI----TAANSGITLTA 44 (105)
Q Consensus 13 r~~~~~~F~~~~~~~vll~s~----~~~~~Gl~l~~ 44 (105)
-...++....++ ++++|++. +..+.|.||..
T Consensus 36 L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~ 70 (261)
T 1ef8_A 36 LMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHE 70 (261)
T ss_dssp HHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTT
T ss_pred HHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHh
Confidence 344555556667 88888875 34567889874
Done!