RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12190
         (105 letters)



>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
           rerio) [TaxId: 7955]}
          Length = 346

 Score = 59.6 bits (143), Expect = 2e-12
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 10  SEERKSVVDQFQYEDKFRV-AVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAH 68
            ++R  +V++F          +LS  A   G+ L  AN +V  +  WNP    QA  R  
Sbjct: 154 IKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVW 213

Query: 69  RIGQQDSVLIQYLVAKQTADDYLWPLVMTKLDV 101
           R GQ+ +  I  L++  T ++ +      K  +
Sbjct: 214 RDGQKKTCYIYRLLSTGTIEEKILQRQAHKKAL 246


>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily
           {Sulfolobus solfataricus [TaxId: 2287]}
          Length = 244

 Score = 57.0 bits (136), Expect = 9e-12
 Identities = 32/101 (31%), Positives = 56/101 (55%)

Query: 1   YIRIDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGIL 60
              + G +  +ER  ++ +FQ     +  VLS+ A   GI LT+AN V+  + +WNP + 
Sbjct: 113 VPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVE 172

Query: 61  TQAEDRAHRIGQQDSVLIQYLVAKQTADDYLWPLVMTKLDV 101
            QA DR +RIGQ  +V++  L++  T ++ +  L+  K  +
Sbjct: 173 DQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSL 213


>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 200

 Score = 44.1 bits (103), Expect = 4e-07
 Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 3/84 (3%)

Query: 4   IDGSVGSEERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQA 63
           I      EER+ +++ F+      +        + GI +  AN+ V      +     Q 
Sbjct: 118 ITHRTSREEREEILEGFRTGRFRAIVS--SQVLDEGIDVPDANVGVIMSGSGSAREYIQR 175

Query: 64  EDRAHRIGQQ-DSVLIQYLVAKQT 86
             R  R  +     ++  L+++ T
Sbjct: 176 LGRILRPSKGKKEAVLYELISRGT 199


>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
           PF2015 {Pyrococcus furiosus [TaxId: 2261]}
          Length = 286

 Score = 43.7 bits (102), Expect = 6e-07
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 6/83 (7%)

Query: 11  EERKSVVDQFQYEDKFRVAVLSITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRI 70
            E+K ++D+F    +F V +++ +    G+ +   +LVVF E   +     Q   R  R 
Sbjct: 206 REQKLILDEFA-RGEFNV-LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQ---RRGRT 260

Query: 71  GQQDSVLIQYLVAKQTADD-YLW 92
           G+     +  L+AK T D+ Y W
Sbjct: 261 GRHMPGRVIILMAKGTRDEAYYW 283


>d2d32a1 d.128.1.4 (A:1-518) Gamma-glutamylcysteine synthetase GshA
           {Escherichia coli [TaxId: 562]}
          Length = 518

 Score = 26.1 bits (57), Expect = 1.0
 Identities = 6/19 (31%), Positives = 10/19 (52%)

Query: 78  IQYLVAKQTADDYLWPLVM 96
           +    A+   D+ +WPL M
Sbjct: 86  LHRYTARNMGDERMWPLSM 104


>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
           {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 155

 Score = 25.7 bits (55), Expect = 1.2
 Identities = 10/46 (21%), Positives = 17/46 (36%)

Query: 32  SITAANSGITLTAANLVVFAELFWNPGILTQAEDRAHRIGQQDSVL 77
           +    + GI +   N V+   L  NP        R  R G++   +
Sbjct: 84  ATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAI 129


>d1wpxb1 b.17.1.1 (B:501-719) Carboxypeptidase Y inhibitor {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 219

 Score = 24.3 bits (52), Expect = 3.4
 Identities = 11/23 (47%), Positives = 12/23 (52%)

Query: 82  VAKQTADDYLWPLVMTKLDVPSP 104
            A    DD L+ LVMT  D PS 
Sbjct: 79  NAYVPQDDDLFTLVMTDPDAPSK 101


>d1h41a1 c.1.8.10 (A:152-712) alpha-D-glucuronidase catalytic domain
           {Pseudomonas cellulosa [TaxId: 155077]}
          Length = 561

 Score = 24.3 bits (53), Expect = 3.9
 Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 9   GSEERKSVVDQ-FQYEDKFRVAVLSI-TAAN-SGITLTAANLVVFAELFWNP 57
           GS     +  + F+        V++  T  N +G     ++   F  + W+ 
Sbjct: 271 GSTIGNILEGKVFKTRHTGMAGVINPGTDRNWTGHPFVQSSWYAFGRMAWDH 322


>d1l8na1 c.1.8.10 (A:143-678) alpha-D-glucuronidase catalytic domain
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 536

 Score = 23.9 bits (52), Expect = 5.8
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 9   GSEERKSVV-DQFQYEDKFRVAVLSI-TAAN-SGITLTAANLVVFAELFWNP 57
           GSE +K +    F Y       V +I +  N +G TL  ANL  F  L WNP
Sbjct: 279 GSEVKKVIDGSLFDYRYSGIAGVSNIGSDPNWTGHTLAQANLYGFGRLAWNP 330


>d1jlva2 c.47.1.5 (A:1-84) Class delta GST {Mosquito (Anopheles
          dirus b), isozyme 1-3 [TaxId: 123217]}
          Length = 84

 Score = 22.6 bits (48), Expect = 8.5
 Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 2/44 (4%)

Query: 50 FAELFWNPGILTQAEDRAHRIGQQDSVLIQYLVAKQTADDYLWP 93
          F ++     I T  ++       +   +  YL  K   DD L+P
Sbjct: 43 FLKINPQHCIPTLVDN--GFALWESRAICTYLAEKYGKDDKLYP 84


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0459    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 349,040
Number of extensions: 12892
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 12
Length of query: 105
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 40
Effective length of database: 1,515,146
Effective search space: 60605840
Effective search space used: 60605840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.5 bits)