Query psy12192
Match_columns 82
No_of_seqs 26 out of 28
Neff 2.0
Searched_HMMs 29240
Date Fri Aug 16 21:08:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12192.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12192hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o8x_A Probable RNA polymerase 62.8 3.8 0.00013 21.9 1.6 18 16-33 44-61 (70)
2 3hug_A RNA polymerase sigma fa 51.3 7.9 0.00027 22.5 1.8 18 16-33 66-83 (92)
3 1ku3_A Sigma factor SIGA; heli 50.1 24 0.00081 19.5 3.6 16 17-32 44-59 (73)
4 3mzy_A RNA polymerase sigma-H 45.3 13 0.00044 22.0 2.1 19 16-34 137-155 (164)
5 1or7_A Sigma-24, RNA polymeras 41.3 13 0.00046 22.9 1.8 18 16-33 169-186 (194)
6 1x3u_A Transcriptional regulat 40.6 7.4 0.00025 21.4 0.4 19 16-34 44-62 (79)
7 2jpc_A SSRB; DNA binding prote 38.2 10 0.00035 20.0 0.7 19 16-34 26-44 (61)
8 2q1z_A RPOE, ECF SIGE; ECF sig 36.3 29 0.00099 21.2 2.7 18 16-33 164-181 (184)
9 3a01_A Homeodomain-containing 36.2 27 0.00092 21.1 2.6 15 18-34 59-73 (93)
10 1fse_A GERE; helix-turn-helix 34.0 17 0.00057 19.5 1.2 18 16-33 39-56 (74)
11 1je8_A Nitrate/nitrite respons 33.6 13 0.00043 21.6 0.7 19 16-34 49-67 (82)
12 1tue_A Replication protein E1; 33.5 5.8 0.0002 28.7 -0.9 20 13-32 3-22 (212)
13 3t72_q RNA polymerase sigma fa 31.5 28 0.00095 21.6 2.1 20 15-34 51-70 (99)
14 1tc3_C Protein (TC3 transposas 31.2 13 0.00043 17.8 0.4 10 16-25 34-43 (51)
15 1tty_A Sigma-A, RNA polymerase 30.2 16 0.00054 21.2 0.7 17 17-33 52-68 (87)
16 2da3_A Alpha-fetoprotein enhan 29.5 46 0.0016 18.9 2.7 19 13-33 48-72 (80)
17 2p7v_B Sigma-70, RNA polymeras 29.4 13 0.00046 20.3 0.3 18 16-33 38-55 (68)
18 1rp3_A RNA polymerase sigma fa 28.6 28 0.00097 21.8 1.8 18 16-33 216-233 (239)
19 1l0o_C Sigma factor; bergerat 28.1 12 0.00042 23.4 0.0 18 15-32 226-243 (243)
20 1pdn_C Protein (PRD paired); p 26.0 21 0.0007 20.4 0.7 13 15-27 45-57 (128)
21 2dmu_A Homeobox protein goosec 25.4 89 0.0031 17.4 3.4 19 13-33 38-62 (70)
22 2hin_A GP39, repressor protein 24.5 21 0.00073 21.4 0.6 12 15-26 22-33 (71)
23 2rnj_A Response regulator prot 24.3 18 0.00063 20.9 0.3 18 16-33 57-74 (91)
24 1eci_A Ectatomin; pore-forming 23.7 36 0.0012 19.4 1.4 18 10-28 6-23 (37)
25 1xsv_A Hypothetical UPF0122 pr 23.5 39 0.0013 20.9 1.7 18 16-33 54-71 (113)
26 3c57_A Two component transcrip 23.4 29 0.001 20.5 1.0 19 16-34 55-73 (95)
27 4f21_A Carboxylesterase/phosph 23.3 38 0.0013 22.7 1.7 12 18-29 234-245 (246)
28 1s7o_A Hypothetical UPF0122 pr 22.7 41 0.0014 21.0 1.7 18 16-33 51-68 (113)
29 2rn7_A IS629 ORFA; helix, all 22.4 25 0.00085 20.6 0.6 12 15-26 42-53 (108)
30 2dmt_A Homeobox protein BARH-l 21.6 66 0.0023 18.5 2.4 19 13-33 48-72 (80)
31 2jn6_A Protein CGL2762, transp 21.2 27 0.00094 20.1 0.6 12 15-26 35-46 (97)
32 1jko_C HIN recombinase, DNA-in 21.1 15 0.00051 18.0 -0.5 12 15-26 33-44 (52)
33 1t07_A Hypothetical UPF0269 pr 21.1 1.4E+02 0.0048 19.6 4.1 58 6-76 27-93 (94)
34 4id3_A DNA repair protein REV1 20.5 48 0.0017 18.6 1.6 10 22-31 72-81 (92)
35 1b8i_A Ultrabithorax, protein 20.4 1.1E+02 0.0038 17.7 3.2 19 13-33 51-75 (81)
No 1
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=62.77 E-value=3.8 Score=21.95 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12192 16 AKQTIRNWLEACLKKIRA 33 (82)
Q Consensus 16 AkqTIr~WLe~CLkr~r~ 33 (82)
+..||+.++.+|++++|.
T Consensus 44 s~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 44 PVGTIRSRVARARDALLA 61 (70)
T ss_dssp CHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 457999999999999986
No 2
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=51.35 E-value=7.9 Score=22.51 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12192 16 AKQTIRNWLEACLKKIRA 33 (82)
Q Consensus 16 AkqTIr~WLe~CLkr~r~ 33 (82)
+..||+.++.++++++|.
T Consensus 66 s~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 66 AEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 357999999999999987
No 3
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=50.08 E-value=24 Score=19.54 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12192 17 KQTIRNWLEACLKKIR 32 (82)
Q Consensus 17 kqTIr~WLe~CLkr~r 32 (82)
..||+.++.+.++++|
T Consensus 44 ~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 44 RERIRQIENKALRKLK 59 (73)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4599999999999998
No 4
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=45.30 E-value=13 Score=21.97 Aligned_cols=19 Identities=21% Similarity=0.120 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy12192 16 AKQTIRNWLEACLKKIRAT 34 (82)
Q Consensus 16 AkqTIr~WLe~CLkr~r~~ 34 (82)
...||++++.+|++++|..
T Consensus 137 s~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 137 NLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 3469999999999999873
No 5
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=41.27 E-value=13 Score=22.86 Aligned_cols=18 Identities=17% Similarity=0.150 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12192 16 AKQTIRNWLEACLKKIRA 33 (82)
Q Consensus 16 AkqTIr~WLe~CLkr~r~ 33 (82)
+..||++++.++++++|.
T Consensus 169 s~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 169 PVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 357999999999999986
No 6
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=40.60 E-value=7.4 Score=21.42 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy12192 16 AKQTIRNWLEACLKKIRAT 34 (82)
Q Consensus 16 AkqTIr~WLe~CLkr~r~~ 34 (82)
+..||+.++.+++++++..
T Consensus 44 s~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 44 SPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp CHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHcCC
Confidence 4579999999999999873
No 7
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=38.19 E-value=10 Score=20.00 Aligned_cols=19 Identities=11% Similarity=0.240 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy12192 16 AKQTIRNWLEACLKKIRAT 34 (82)
Q Consensus 16 AkqTIr~WLe~CLkr~r~~ 34 (82)
+..||++++.+.+++++..
T Consensus 26 s~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 26 SIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp CHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHHHCCC
Confidence 4679999999999999883
No 8
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=36.34 E-value=29 Score=21.22 Aligned_cols=18 Identities=22% Similarity=0.422 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12192 16 AKQTIRNWLEACLKKIRA 33 (82)
Q Consensus 16 AkqTIr~WLe~CLkr~r~ 33 (82)
+..||++++.+|++++|.
T Consensus 164 s~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 164 PLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 347999999999999985
No 9
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=36.25 E-value=27 Score=21.12 Aligned_cols=15 Identities=7% Similarity=0.609 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy12192 18 QTIRNWLEACLKKIRAT 34 (82)
Q Consensus 18 qTIr~WLe~CLkr~r~~ 34 (82)
..|..|+.. +|.|++
T Consensus 59 ~qV~vWFqN--RR~k~k 73 (93)
T 3a01_A 59 AQVKTWFQN--RRTKWR 73 (93)
T ss_dssp HHHHHHHHH--HHHHHH
T ss_pred hhcccccHh--hhhhhh
Confidence 349999966 455553
No 10
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=34.02 E-value=17 Score=19.51 Aligned_cols=18 Identities=22% Similarity=0.551 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12192 16 AKQTIRNWLEACLKKIRA 33 (82)
Q Consensus 16 AkqTIr~WLe~CLkr~r~ 33 (82)
+..||+.++.+++++++.
T Consensus 39 s~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 39 SEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHCC
Confidence 567999999999999887
No 11
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=33.63 E-value=13 Score=21.56 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy12192 16 AKQTIRNWLEACLKKIRAT 34 (82)
Q Consensus 16 AkqTIr~WLe~CLkr~r~~ 34 (82)
+..||++++.+++++++..
T Consensus 49 s~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 49 TESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHHHcCC
Confidence 5679999999999998873
No 12
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=33.54 E-value=5.8 Score=28.71 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy12192 13 EEVAKQTIRNWLEACLKKIR 32 (82)
Q Consensus 13 EEVAkqTIr~WLe~CLkr~r 32 (82)
+++++||+..||.+|..++-
T Consensus 3 ~~~~~m~~~~~i~~~~~~~~ 22 (212)
T 1tue_A 3 EFGSGSNMSQWIRFRCSKID 22 (212)
T ss_dssp ---CCSCHHHHHHHHHHTSC
T ss_pred HHHHhcCHHHHHHHHHHHcc
Confidence 67889999999999988754
No 13
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=31.49 E-value=28 Score=21.63 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy12192 15 VAKQTIRNWLEACLKKIRAT 34 (82)
Q Consensus 15 VAkqTIr~WLe~CLkr~r~~ 34 (82)
++..||++.+.+.++++|..
T Consensus 51 iS~~tVr~~~~rAlkkLR~~ 70 (99)
T 3t72_q 51 VTRERIRQIEAKALRKLRHP 70 (99)
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 34569999999999999973
No 14
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=31.24 E-value=13 Score=17.82 Aligned_cols=10 Identities=30% Similarity=0.677 Sum_probs=7.3
Q ss_pred HHHHHHHHHH
Q psy12192 16 AKQTIRNWLE 25 (82)
Q Consensus 16 AkqTIr~WLe 25 (82)
+..||..|+.
T Consensus 34 s~~Tv~~~~~ 43 (51)
T 1tc3_C 34 SRHCIRVYLK 43 (51)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHh
Confidence 4568888875
No 15
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=30.25 E-value=16 Score=21.18 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy12192 17 KQTIRNWLEACLKKIRA 33 (82)
Q Consensus 17 kqTIr~WLe~CLkr~r~ 33 (82)
..||++++.+.++++|.
T Consensus 52 ~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 52 RERIRQIEVKALRKLRH 68 (87)
T ss_dssp HHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45999999999999986
No 16
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=29.51 E-value=46 Score=18.88 Aligned_cols=19 Identities=16% Similarity=0.660 Sum_probs=12.5
Q ss_pred HHHHHHH------HHHHHHHHHHHHHH
Q psy12192 13 EEVAKQT------IRNWLEACLKKIRA 33 (82)
Q Consensus 13 EEVAkqT------Ir~WLe~CLkr~r~ 33 (82)
+++|+++ |..|+.. +|.|+
T Consensus 48 ~~La~~l~l~~~qV~~WFqN--rR~k~ 72 (80)
T 2da3_A 48 DHIAHEVGLKKRVVQVWFQN--TRARE 72 (80)
T ss_dssp HHHHHHHTSCHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHCcCHHHhHHHhHH--HHHhH
Confidence 4566654 9999965 45555
No 17
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=29.44 E-value=13 Score=20.31 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12192 16 AKQTIRNWLEACLKKIRA 33 (82)
Q Consensus 16 AkqTIr~WLe~CLkr~r~ 33 (82)
+..||+.++.+.++++|.
T Consensus 38 s~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 38 TRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CHHHHHHHHHHHHHGGGS
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 356999999999999886
No 18
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=28.63 E-value=28 Score=21.85 Aligned_cols=18 Identities=11% Similarity=0.292 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12192 16 AKQTIRNWLEACLKKIRA 33 (82)
Q Consensus 16 AkqTIr~WLe~CLkr~r~ 33 (82)
...||+.++.++++++|.
T Consensus 216 s~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 216 SVSRVSQLKAKALERLRE 233 (239)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 357999999999999986
No 19
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=28.11 E-value=12 Score=23.43 Aligned_cols=18 Identities=11% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12192 15 VAKQTIRNWLEACLKKIR 32 (82)
Q Consensus 15 VAkqTIr~WLe~CLkr~r 32 (82)
++..||+.++.++++++|
T Consensus 226 is~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 226 ISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp ------------------
T ss_pred cCHHHHHHHHHHHHHHcC
Confidence 445688999988888875
No 20
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=26.01 E-value=21 Score=20.40 Aligned_cols=13 Identities=15% Similarity=0.240 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHH
Q psy12192 15 VAKQTIRNWLEAC 27 (82)
Q Consensus 15 VAkqTIr~WLe~C 27 (82)
|+..||+.|+...
T Consensus 45 is~~Tv~~w~~~~ 57 (128)
T 1pdn_C 45 VSHGCVSKILNRY 57 (128)
T ss_dssp CCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 4467999998764
No 21
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.38 E-value=89 Score=17.38 Aligned_cols=19 Identities=16% Similarity=0.628 Sum_probs=12.4
Q ss_pred HHHHHHH------HHHHHHHHHHHHHH
Q psy12192 13 EEVAKQT------IRNWLEACLKKIRA 33 (82)
Q Consensus 13 EEVAkqT------Ir~WLe~CLkr~r~ 33 (82)
+++|+++ |..|+.. +|.|+
T Consensus 38 ~~LA~~l~l~~~qV~~WFqN--rR~k~ 62 (70)
T 2dmu_A 38 EQLARKVHLREEKVEVWFKN--RRAKW 62 (70)
T ss_dssp HHHHHHHTCCHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHCCCHHHeehcccc--ccccc
Confidence 4566655 9999965 45554
No 22
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=24.53 E-value=21 Score=21.36 Aligned_cols=12 Identities=33% Similarity=0.758 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHH
Q psy12192 15 VAKQTIRNWLEA 26 (82)
Q Consensus 15 VAkqTIr~WLe~ 26 (82)
|+++||..|+.+
T Consensus 22 Vs~~aVs~W~~g 33 (71)
T 2hin_A 22 VTPGAVYQWLQA 33 (71)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHhC
Confidence 457999999975
No 23
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=24.31 E-value=18 Score=20.90 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12192 16 AKQTIRNWLEACLKKIRA 33 (82)
Q Consensus 16 AkqTIr~WLe~CLkr~r~ 33 (82)
+..||++++.+.+++++.
T Consensus 57 s~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 57 TIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp CHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHCC
Confidence 567999999999999887
No 24
>1eci_A Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=23.66 E-value=36 Score=19.41 Aligned_cols=18 Identities=33% Similarity=0.614 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy12192 10 IIEEEVAKQTIRNWLEACL 28 (82)
Q Consensus 10 ~IeEEVAkqTIr~WLe~CL 28 (82)
-|||-|. .|+..|-++|-
T Consensus 6 kiwetic-pt~~~~akkc~ 23 (37)
T 1eci_A 6 KIWETVC-PTVEPWAKKCS 23 (37)
T ss_dssp HHHHHHH-HHHHHHHHTBC
T ss_pred HHHHHhC-cchHHHHHHcc
Confidence 4776664 79999999993
No 25
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=23.47 E-value=39 Score=20.87 Aligned_cols=18 Identities=6% Similarity=0.119 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12192 16 AKQTIRNWLEACLKKIRA 33 (82)
Q Consensus 16 AkqTIr~WLe~CLkr~r~ 33 (82)
+..||+.++.++++++|.
T Consensus 54 S~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 54 SRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 457999999999988886
No 26
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=23.38 E-value=29 Score=20.48 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy12192 16 AKQTIRNWLEACLKKIRAT 34 (82)
Q Consensus 16 AkqTIr~WLe~CLkr~r~~ 34 (82)
+..||++++.+.+++++..
T Consensus 55 s~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 55 AEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHHcCC
Confidence 4579999999999999873
No 27
>4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp}
Probab=23.31 E-value=38 Score=22.73 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHH
Q psy12192 18 QTIRNWLEACLK 29 (82)
Q Consensus 18 qTIr~WLe~CLk 29 (82)
.-|+.||++||+
T Consensus 234 ~~~~~fL~k~l~ 245 (246)
T 4f21_A 234 KDISNFIAKTFK 245 (246)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC
Confidence 358999999975
No 28
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=22.74 E-value=41 Score=20.98 Aligned_cols=18 Identities=11% Similarity=0.224 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12192 16 AKQTIRNWLEACLKKIRA 33 (82)
Q Consensus 16 AkqTIr~WLe~CLkr~r~ 33 (82)
+..||+.++.+.++++|.
T Consensus 51 S~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 51 SRQAVYDNIKRTEKILET 68 (113)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 467999999999999886
No 29
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=22.43 E-value=25 Score=20.65 Aligned_cols=12 Identities=25% Similarity=0.714 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHH
Q psy12192 15 VAKQTIRNWLEA 26 (82)
Q Consensus 15 VAkqTIr~WLe~ 26 (82)
|+..||+.|+..
T Consensus 42 Is~~tl~~W~~~ 53 (108)
T 2rn7_A 42 CTPETLRVWVRQ 53 (108)
T ss_dssp SCHHHHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 345799999754
No 30
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.61 E-value=66 Score=18.55 Aligned_cols=19 Identities=11% Similarity=0.583 Sum_probs=12.8
Q ss_pred HHHHHHH------HHHHHHHHHHHHHH
Q psy12192 13 EEVAKQT------IRNWLEACLKKIRA 33 (82)
Q Consensus 13 EEVAkqT------Ir~WLe~CLkr~r~ 33 (82)
+++|+++ |..|+.. +|.|+
T Consensus 48 ~~LA~~l~L~~~qV~vWFqN--RR~k~ 72 (80)
T 2dmt_A 48 IDLAESLGLSQLQVKTWYQN--RRMKW 72 (80)
T ss_dssp HHHHHHHCCCHHHHHHHHHH--HHHHH
T ss_pred HHHHHHhCCCHHHeeeccHH--HHHHh
Confidence 4666665 9999865 45555
No 31
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=21.18 E-value=27 Score=20.14 Aligned_cols=12 Identities=25% Similarity=0.825 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHH
Q psy12192 15 VAKQTIRNWLEA 26 (82)
Q Consensus 15 VAkqTIr~WLe~ 26 (82)
|+..||..|+..
T Consensus 35 Is~~tl~rW~~~ 46 (97)
T 2jn6_A 35 INRVTLKNWIIK 46 (97)
T ss_dssp SCHHHHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 456799999754
No 32
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=21.14 E-value=15 Score=18.03 Aligned_cols=12 Identities=17% Similarity=0.387 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHH
Q psy12192 15 VAKQTIRNWLEA 26 (82)
Q Consensus 15 VAkqTIr~WLe~ 26 (82)
|+..||..|+..
T Consensus 33 vs~~Tv~r~l~~ 44 (52)
T 1jko_C 33 IGVSTLYRYFPA 44 (52)
T ss_dssp CCHHHHHHHSCT
T ss_pred CCHHHHHHHHHH
Confidence 567899999764
No 33
>1t07_A Hypothetical UPF0269 protein PA5148; structural genomics, APC5047, conserved hypothetical protein, PSI, protein structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa} SCOP: d.279.1.1
Probab=21.07 E-value=1.4e+02 Score=19.63 Aligned_cols=58 Identities=17% Similarity=0.114 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh---------hhhhhhhhhhccccchhhhccccCCCchhh
Q psy12192 6 EIEYIIEEEVAKQTIRNWLEACLKKIRATNKQQTSLIAGLR---------ATNEMLHMQDHLEDKTKDKQAEKDTDANEG 76 (82)
Q Consensus 6 elEy~IeEEVAkqTIr~WLe~CLkr~r~~~kqq~~li~~lr---------~~~~q~~~~~~~~~~~~~~~~~~d~~an~~ 76 (82)
+|--.|-+.|+|+-=..|++ +|++||+-.| .+.++.-..++..+ + +.++++=+|+..|
T Consensus 27 elGkrIy~~VSkeAW~~W~~-----------~QTMLINE~rLnm~d~~aRk~L~~qMekFff~~-~-~~~~~gyvpp~~g 93 (94)
T 1t07_A 27 AKGEDIYNNVSRKAWDEWQK-----------HQTMLINERRLNMMNAEDRKFLQQEMDKFLSGE-D-YAKADGYVPPSAG 93 (94)
T ss_dssp HHHHHHHHHCBHHHHHHHHH-----------HHHHHHHHHTCCTTSHHHHHHHHHHHHHHTSSS-C-C------------
T ss_pred HHHHHHHHHHhHHHHHHHHH-----------hhHhHhhhccCCCCCHHHHHHHHHHHHHHhcCC-C-CCCCCCCCCCCCC
Confidence 56778999999999888875 4555555444 44333333233222 2 5677777776554
No 34
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=20.45 E-value=48 Score=18.56 Aligned_cols=10 Identities=20% Similarity=0.750 Sum_probs=8.1
Q ss_pred HHHHHHHHHH
Q psy12192 22 NWLEACLKKI 31 (82)
Q Consensus 22 ~WLe~CLkr~ 31 (82)
.||..|+++-
T Consensus 72 ~Wi~dci~~~ 81 (92)
T 4id3_A 72 DWIVDSVKEA 81 (92)
T ss_dssp HHHHHHHHHT
T ss_pred cHHHHHHHcC
Confidence 6999998763
No 35
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=20.38 E-value=1.1e+02 Score=17.72 Aligned_cols=19 Identities=21% Similarity=0.527 Sum_probs=12.5
Q ss_pred HHHHHHH------HHHHHHHHHHHHHH
Q psy12192 13 EEVAKQT------IRNWLEACLKKIRA 33 (82)
Q Consensus 13 EEVAkqT------Ir~WLe~CLkr~r~ 33 (82)
+++|+.+ |..|+..- |.|+
T Consensus 51 ~~LA~~l~l~~~qV~vWFqNR--R~k~ 75 (81)
T 1b8i_A 51 IEMAHALSLTERQIKIWFQNR--RMKL 75 (81)
T ss_dssp HHHHHHHTCCHHHHHHHHHHH--HHHH
T ss_pred HHHHHHhCCCHHHHHHHhHHh--hhhh
Confidence 4566655 99999763 4444
Done!