Query psy12192
Match_columns 82
No_of_seqs 26 out of 28
Neff 2.0
Searched_HMMs 13730
Date Fri Aug 16 21:08:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12192.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12192hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rp3a2 a.4.13.2 (A:164-234) S 39.8 7.4 0.00054 20.3 1.8 18 16-33 50-67 (71)
2 d1ecia_ a.33.1.1 (A:) Ectatomi 36.7 7.4 0.00054 20.9 1.4 19 10-29 6-24 (37)
3 d1s5aa_ d.17.4.10 (A:) Hypothe 35.4 15 0.0011 20.2 2.8 19 12-30 3-21 (139)
4 d1x74a1 c.123.1.1 (A:2-360) 2- 28.1 12 0.00086 24.6 1.6 25 3-27 266-290 (359)
5 d1xk7a1 c.123.1.1 (A:4-405) Cr 27.9 14 0.001 24.6 2.0 24 4-27 286-309 (402)
6 d1nexa2 d.42.1.1 (A:4-103) Cen 24.3 0.66 4.8E-05 26.3 -4.8 20 8-27 12-33 (72)
7 d1q7ea_ c.123.1.1 (A:) Hypothe 22.0 18 0.0013 24.1 1.6 25 3-27 304-328 (417)
8 d1wf6a_ c.15.1.5 (A:) DNA topo 20.6 21 0.0015 20.7 1.6 13 21-33 106-118 (132)
9 d2jn6a1 a.4.1.19 (A:1-89) Unch 20.6 13 0.00098 20.6 0.6 12 15-26 35-46 (89)
10 d1rw6a_ a.47.4.1 (A:) CAPPD, a 20.1 32 0.0023 23.2 2.6 23 24-46 117-140 (192)
No 1
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=39.84 E-value=7.4 Score=20.26 Aligned_cols=18 Identities=11% Similarity=0.292 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12192 16 AKQTIRNWLEACLKKIRA 33 (82)
Q Consensus 16 AkqTIr~WLe~CLkr~r~ 33 (82)
...||+..+.++++++|.
T Consensus 50 s~~tv~~~~~ra~~~Lr~ 67 (71)
T d1rp3a2 50 SVSRVSQLKAKALERLRE 67 (71)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 357999999999999986
No 2
>d1ecia_ a.33.1.1 (A:) Ectatomin subunit A, EA {Ant (Ectatomma tuberculatum), venom [TaxId: 39300]}
Probab=36.67 E-value=7.4 Score=20.89 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy12192 10 IIEEEVAKQTIRNWLEACLK 29 (82)
Q Consensus 10 ~IeEEVAkqTIr~WLe~CLk 29 (82)
-|||-|. .|+.-|-++|--
T Consensus 6 kiwetvc-ptvepwakkcsg 24 (37)
T d1ecia_ 6 KIWETVC-PTVEPWAKKCSG 24 (37)
T ss_dssp HHHHHHH-HHHHHHHHTBCH
T ss_pred HHHHHhC-CcccHHHHhccc
Confidence 5787775 799999999943
No 3
>d1s5aa_ d.17.4.10 (A:) Hypothetical protein YesE {Bacillus subtilis [TaxId: 1423]}
Probab=35.40 E-value=15 Score=20.16 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy12192 12 EEEVAKQTIRNWLEACLKK 30 (82)
Q Consensus 12 eEEVAkqTIr~WLe~CLkr 30 (82)
+.|-|++||+.|++.+..+
T Consensus 3 ~~~~~~e~v~~~~~a~~~~ 21 (139)
T d1s5aa_ 3 EFEKACETLRKFMAYMLEK 21 (139)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcC
Confidence 4588999999999998544
No 4
>d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=28.08 E-value=12 Score=24.59 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=22.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q psy12192 3 AREEIEYIIEEEVAKQTIRNWLEAC 27 (82)
Q Consensus 3 ~REelEy~IeEEVAkqTIr~WLe~C 27 (82)
.+++|..+|.+.+++.|-..|++.|
T Consensus 266 ~~~el~~~l~~~~~~~t~~e~~~~l 290 (359)
T d1x74a1 266 RWPELRALLTEAFASHDRDHWGAVF 290 (359)
T ss_dssp GHHHHHHHHHHHHHTSCHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhhhHHHHHHHH
Confidence 4688999999999999999999876
No 5
>d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]}
Probab=27.87 E-value=14 Score=24.61 Aligned_cols=24 Identities=21% Similarity=0.122 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q psy12192 4 REEIEYIIEEEVAKQTIRNWLEAC 27 (82)
Q Consensus 4 REelEy~IeEEVAkqTIr~WLe~C 27 (82)
++++...|++-++++|...|++.+
T Consensus 286 ~~~l~~~i~~~~~~~t~~e~~~~l 309 (402)
T d1xk7a1 286 GPLVEEKLDAWLATHTIAEVKERF 309 (402)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccchhhhhhh
Confidence 567888899999999999999987
No 6
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.29 E-value=0.66 Score=26.29 Aligned_cols=20 Identities=15% Similarity=0.619 Sum_probs=12.2
Q ss_pred HHHHHHHHHHH--HHHHHHHHH
Q psy12192 8 EYIIEEEVAKQ--TIRNWLEAC 27 (82)
Q Consensus 8 Ey~IeEEVAkq--TIr~WLe~C 27 (82)
++.|..++|+| ||+++|+.|
T Consensus 12 ~F~v~~~~a~~S~tIk~ml~~~ 33 (72)
T d1nexa2 12 RFTVDKKIAERSLLLKNYLNDM 33 (72)
T ss_dssp EEEEEHHHHTTSHHHHHTC---
T ss_pred EEEecHHHHHHHHHHHHHHHhc
Confidence 44566778875 888888755
No 7
>d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli [TaxId: 562]}
Probab=21.99 E-value=18 Score=24.10 Aligned_cols=25 Identities=12% Similarity=-0.142 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q psy12192 3 AREEIEYIIEEEVAKQTIRNWLEAC 27 (82)
Q Consensus 3 ~REelEy~IeEEVAkqTIr~WLe~C 27 (82)
.++++...|++-.+++|-..|++.|
T Consensus 304 ~~~~l~~~i~~~~~~~t~~e~~~~l 328 (417)
T d1q7ea_ 304 HIFDIFAEIEKYTVTIDKHEAVAYL 328 (417)
T ss_dssp GHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred hHHHHHHHHhhhccccccchheeee
Confidence 4678888999999999999999887
No 8
>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.64 E-value=21 Score=20.72 Aligned_cols=13 Identities=31% Similarity=0.652 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHH
Q psy12192 21 RNWLEACLKKIRA 33 (82)
Q Consensus 21 r~WLe~CLkr~r~ 33 (82)
-.||..|+++-+.
T Consensus 106 ~~Wl~~c~~~~~~ 118 (132)
T d1wf6a_ 106 AKWLLECFSKGYM 118 (132)
T ss_dssp HHHHHHHHHHSSC
T ss_pred HHHHHHHHHcCCc
Confidence 4799999887443
No 9
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=20.57 E-value=13 Score=20.63 Aligned_cols=12 Identities=25% Similarity=0.825 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHH
Q psy12192 15 VAKQTIRNWLEA 26 (82)
Q Consensus 15 VAkqTIr~WLe~ 26 (82)
|+..||++|+..
T Consensus 35 Is~~tl~~W~k~ 46 (89)
T d2jn6a1 35 INRVTLKNWIIK 46 (89)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 456899999753
No 10
>d1rw6a_ a.47.4.1 (A:) CAPPD, an extracellular domain of amyloid beta A4 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.06 E-value=32 Score=23.23 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=17.7
Q ss_pred HHHHHHH-HHHhhhhhhhhhhhhh
Q psy12192 24 LEACLKK-IRATNKQQTSLIAGLR 46 (82)
Q Consensus 24 Le~CLkr-~r~~~kqq~~li~~lr 46 (82)
+.+||++ ||+.+|.....|...+
T Consensus 117 Vl~aLk~yira~~kDR~Htl~hf~ 140 (192)
T d1rw6a_ 117 VFNMLKKYVRAEQKDRQHTLKHFE 140 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHhHHHHHH
Confidence 3679999 9998888887776543
Done!