RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12192
         (82 letters)



>gnl|CDD|183221 PRK11595, PRK11595, DNA utilization protein GntX; Provisional.
          Length = 227

 Score = 25.4 bits (56), Expect = 3.5
 Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 1/27 (3%)

Query: 23  WLEACLKKIRATNKQQTSLIAGLRATN 49
           +    L + RAT  Q   L A LR  N
Sbjct: 149 YDSEALTRTRATATQHF-LSARLRKRN 174


>gnl|CDD|185017 PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; Provisional.
          Length = 388

 Score = 25.0 bits (54), Expect = 6.3
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 7   IEYIIEEEVAKQTIRNWLEACLKKIRATNKQQTSLIAGLRATNEMLHMQD 56
           +E II E V K+   ++  + L++  AT KQQ  +I   R   E+  + D
Sbjct: 330 VEVIIYEPVMKED--SFFNSRLERDLATFKQQADVIISNRMAEELKDVAD 377


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.310    0.125    0.333 

Gapped
Lambda     K      H
   0.267   0.0720    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,967,201
Number of extensions: 299391
Number of successful extensions: 300
Number of sequences better than 10.0: 1
Number of HSP's gapped: 300
Number of HSP's successfully gapped: 19
Length of query: 82
Length of database: 10,937,602
Length adjustment: 51
Effective length of query: 31
Effective length of database: 8,675,548
Effective search space: 268941988
Effective search space used: 268941988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.2 bits)