RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12192
         (82 letters)



>d2ae0x1 b.52.1.4 (X:3-337) Membrane-bound lytic murein
           transglycosylase A, MLTA {Escherichia coli [TaxId: 562]}
          Length = 335

 Score = 24.0 bits (52), Expect = 2.9
 Identities = 7/28 (25%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 1   MLAREEIE--YIIEEEVAKQTIRNWLEA 26
            + +  I+   + +E+++ Q IR+W E 
Sbjct: 188 SIGKVLIDRGEVKKEDMSMQAIRHWGET 215


>d2pnwa1 b.52.1.4 (A:5-369) Membrane-bound lytic murein
           transglycosylase A, MLTA {Agrobacterium tumefaciens
           [TaxId: 358]}
          Length = 365

 Score = 23.4 bits (50), Expect = 4.6
 Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MLAREEIE--YIIEEEVAKQTIRNWLEA 26
            + R  ++   +  + ++ QTIR WL  
Sbjct: 210 PIGRLLLDRGELDPKTISMQTIRQWLAD 237


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.125    0.333 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 273,347
Number of extensions: 9720
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 11
Length of query: 82
Length of database: 2,407,596
Length adjustment: 48
Effective length of query: 34
Effective length of database: 1,748,556
Effective search space: 59450904
Effective search space used: 59450904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.2 bits)