BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12194
(2042 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CXP|C Chain C, Cryogenic Crystal Structure Of Human Myeloperoxidase Isoform
C
pdb|1CXP|D Chain D, Cryogenic Crystal Structure Of Human Myeloperoxidase Isoform
C
pdb|1D2V|C Chain C, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D2V|D Chain D, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D7W|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D7W|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D5L|C Chain C, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D5L|D Chain D, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1DNU|C Chain C, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNU|D Chain D, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNW|C Chain C, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|1DNW|D Chain D, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|4DL1|C Chain C, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|D Chain D, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|G Chain G, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|H Chain H, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|K Chain K, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|L Chain L, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|O Chain O, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|P Chain P, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
Length = 466
Score = 175 bits (443), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 141/448 (31%), Positives = 216/448 (48%), Gaps = 79/448 (17%)
Query: 676 CDSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRSLSGQQG--FGPREQINQNS 733
C++ P C P+ IP DP R + C+PF RS G R QIN +
Sbjct: 3 CETSCVQQPPCFPLKIPPNDP------RIKNQADCIPFFRSXPACPGSNITIRNQINALT 56
Query: 734 AYLDGSLIYGEHACQAKDLRSYDGKLNVTLMPGR-----KDLLPNTPTHPE-C----RSR 783
+++D S++YG A++LR+ +L + + R + LLP H + C RS
Sbjct: 57 SFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSA 116
Query: 784 Y--CFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQW 841
CF+AGD R+SE P LT+MHT+L+REHNRLA +L +NP W+ E+L+Q AR+I+
Sbjct: 117 RIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMV 176
Query: 842 QHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIGHSLLRP 901
Q I Y ++LP +LG A+ Y PT Y+ YND+ P I F T A+R GH+L++P
Sbjct: 177 QIITYRDYLPLVLGPTAMRKY----LPT--YRSYNDSVDPRIANVF-TNAFRYGHTLIQP 229
Query: 902 FI-------------PRLVIARFRRIYASPDDVDLFPGGLSERPVAARLRRIYASPDDVD 948
F+ PR+ ++R +AS V GG+ P+ LR + A+P ++
Sbjct: 230 FMFRLDNRYQPMEPNPRVPLSRV--FFASWRVV--LEGGID--PI---LRGLMATPAKLN 280
Query: 949 LFPGGLSEQPVAVIVRFRRIYASPDDVDL-FPGGLSER------PVAARLRRIYASPDDV 1001
+ +AV R++ + L P +R P RR P
Sbjct: 281 ------RQNQIAVDEIRERLFEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLP--- 331
Query: 1002 DLFPGGLSERPVAVGTLSFKLHCLKGYRTFEKKSCEKTHTNIDNVDLLIGGLLENSEPGS 1061
+P VG L L LK R ++ + +N+D+ +GG+ E +
Sbjct: 332 ---------QPETVGQLGTVLRNLKLARKLMEQ-----YGTPNNIDIWMGGVSEPLKRKG 377
Query: 1062 ALGITFSCLLARQFSVLKDSDRFWYEND 1089
+G +C++ QF L+D DRFW+EN+
Sbjct: 378 RVGPLLACIIGTQFRKLRDGDRFWWENE 405
Score = 137 bits (345), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 93/295 (31%), Positives = 140/295 (47%), Gaps = 45/295 (15%)
Query: 1629 LPFMRSLSGKKTGEPSYYTYHTLIE---GTVTAEVLSDGHVLLRDHFFNPDLIYKP---- 1681
LP + + + P+Y +Y+ ++ V GH L++ F D Y+P
Sbjct: 185 LPLVLGPTAMRKYLPTYRSYNDSVDPRIANVFTNAFRYGHTLIQPFMFRLDNRYQPMEPN 244
Query: 1682 ------------------NMIDEMMRGLAGTP--MENLDQFVTGEITNHLFEEKGRPHSG 1721
ID ++RGL TP + +Q EI LFE+ R G
Sbjct: 245 PRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMR--IG 302
Query: 1722 VDLPALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIAR-FRRIYASPDDV 1780
+DLPALN+QR+RDHG+P YN +R C L + +T L + + +AR Y +P+++
Sbjct: 303 LDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNI 362
Query: 1781 DLFPGGLSERPVAGGMVGPTFACIIGLQFRQLRKCDRFWYETDDPVIRFTEPQLQEIRKA 1840
D++ GG+SE G VGP ACIIG QFR+LR DRFW+E + F+ Q Q
Sbjct: 363 DIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENEGV---FSMQQRQ----- 414
Query: 1841 TLAKEIKKATLAKVICANMDYPGEITNHLFEEKGRPHSGVD---LPALNIQRARD 1892
+ + +L ++IC N N++F P V+ LPALN+ R+
Sbjct: 415 ----ALAQISLPRIICDNTGITTVSKNNIFMSNSYPRDFVNCSTLPALNLASWRE 465
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 66/109 (60%), Gaps = 5/109 (4%)
Query: 1337 IDEMMRGLAGTP--MENLDQFVTGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYN 1394
ID ++RGL TP + +Q EI LFE+ R G+DLPALN+QR+RDHG+P YN
Sbjct: 265 IDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMR--IGLDLPALNMQRSRDHGLPGYN 322
Query: 1395 EYRALCNLKKAKTWADLSREIPDEVIAR-FRRIYASPDDVDLFPGGLSE 1442
+R C L + +T L + + +AR Y +P+++D++ GG+SE
Sbjct: 323 AWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSE 371
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 60/100 (60%), Gaps = 3/100 (3%)
Query: 1849 ATLAKVICANMDYPGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLK 1908
AT AK+ N EI LFE+ R G+DLPALN+QR+RDHG+P YN +R C L
Sbjct: 274 ATPAKLNRQNQIAVDEIRERLFEQVMR--IGLDLPALNMQRSRDHGLPGYNAWRRFCGLP 331
Query: 1909 KAKTWADLSREIPDEVIAR-FRRIYASPDDVDLFPGGLSE 1947
+ +T L + + +AR Y +P+++D++ GG+SE
Sbjct: 332 QPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSE 371
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 45/148 (30%)
Query: 104 ANTTTAKKVVNQATGFLDGSKIYGSDSILSRTQYGAYLQ--------------------- 142
+ T + +N T F+D S +YGS+ L+R Q
Sbjct: 43 GSNITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFD 102
Query: 143 ------CVSCNSPSNL------------------MYKLFELEHNRLVTELAEVNPDWSED 178
C+ N + + M+ L EHNRL TEL +NP W +
Sbjct: 103 NLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGE 162
Query: 179 VLFEEARSIVIAQIQHVTYDEYLPVLIG 206
L++EAR IV A +Q +TY +YLP+++G
Sbjct: 163 RLYQEARKIVGAMVQIITYRDYLPLVLG 190
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 1 MYKLFELEHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIGEVA 57
M+ L EHNRL TEL +NP W + L++EAR IV A +Q +TY +YLP+++G A
Sbjct: 137 MHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLGPTA 193
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 245 ECVNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 282
+ +NP W L +EAR IV A +Q +TY +YLP+++G
Sbjct: 153 KSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLG 190
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 283 ECVNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 320
+ +NP W L +EAR IV A +Q +TY +YLP+++G
Sbjct: 153 KSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLG 190
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 321 ECVNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 358
+ +NP W L +EAR IV A +Q +TY +YLP+++G
Sbjct: 153 KSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLG 190
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 359 ECVNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 396
+ +NP W L +EAR IV A +Q +TY +YLP+++G
Sbjct: 153 KSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLG 190
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 397 ECVNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 434
+ +NP W L +EAR IV A +Q +TY +YLP+++G
Sbjct: 153 KSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLG 190
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 435 ECVNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 472
+ +NP W L +EAR IV A +Q +TY +YLP+++G
Sbjct: 153 KSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLG 190
Score = 38.1 bits (87), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 1195 LKLSPTGY------YKGYNDNCKPNIMTEFATAAYRIGHSLLRPFILPCTNEKGTMQQN 1247
L L PT Y+ YND+ P I F T A+R GH+L++PF+ N M+ N
Sbjct: 187 LVLGPTAMRKYLPTYRSYNDSVDPRIANVF-TNAFRYGHTLIQPFMFRLDNRYQPMEPN 244
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 1594 CDSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRS 1634
C++ P C P+ IP DP R + C+PF RS
Sbjct: 3 CETSCVQQPPCFPLKIPPNDP------RIKNQADCIPFFRS 37
>pdb|1MYP|C Chain C, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MYP|D Chain D, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MHL|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
pdb|1MHL|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
Length = 466
Score = 175 bits (443), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 141/448 (31%), Positives = 216/448 (48%), Gaps = 79/448 (17%)
Query: 676 CDSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRSLSGQQG--FGPREQINQNS 733
C++ P C P+ IP DP R + C+PF RS G R QIN +
Sbjct: 3 CETSCVQQPPCFPLKIPPNDP------RIKNQADCIPFFRSCPACPGSNITIRNQINALT 56
Query: 734 AYLDGSLIYGEHACQAKDLRSYDGKLNVTLMPGR-----KDLLPNTPTHPE-C----RSR 783
+++D S++YG A++LR+ +L + + R + LLP H + C RS
Sbjct: 57 SFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSA 116
Query: 784 Y--CFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQW 841
CF+AGD R+SE P LT+MHT+L+REHNRLA +L +NP W+ E+L+Q AR+I+
Sbjct: 117 RIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMV 176
Query: 842 QHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIGHSLLRP 901
Q I Y ++LP +LG A+ Y PT Y+ YND+ P I F T A+R GH+L++P
Sbjct: 177 QIITYRDYLPLVLGPTAMRKY----LPT--YRSYNDSVDPRIANVF-TNAFRYGHTLIQP 229
Query: 902 FI-------------PRLVIARFRRIYASPDDVDLFPGGLSERPVAARLRRIYASPDDVD 948
F+ PR+ ++R +AS V GG+ P+ LR + A+P ++
Sbjct: 230 FMFRLDNRYQPMEPNPRVPLSRV--FFASWRVV--LEGGID--PI---LRGLMATPAKLN 280
Query: 949 LFPGGLSEQPVAVIVRFRRIYASPDDVDL-FPGGLSER------PVAARLRRIYASPDDV 1001
+ +AV R++ + L P +R P RR P
Sbjct: 281 ------RQNQIAVDEIRERLFEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLP--- 331
Query: 1002 DLFPGGLSERPVAVGTLSFKLHCLKGYRTFEKKSCEKTHTNIDNVDLLIGGLLENSEPGS 1061
+P VG L L LK R ++ + +N+D+ +GG+ E +
Sbjct: 332 ---------QPETVGQLGTVLRNLKLARKLMEQ-----YGTPNNIDIWMGGVSEPLKRKG 377
Query: 1062 ALGITFSCLLARQFSVLKDSDRFWYEND 1089
+G +C++ QF L+D DRFW+EN+
Sbjct: 378 RVGPLLACIIGTQFRKLRDGDRFWWENE 405
Score = 137 bits (345), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 93/295 (31%), Positives = 140/295 (47%), Gaps = 45/295 (15%)
Query: 1629 LPFMRSLSGKKTGEPSYYTYHTLIE---GTVTAEVLSDGHVLLRDHFFNPDLIYKP---- 1681
LP + + + P+Y +Y+ ++ V GH L++ F D Y+P
Sbjct: 185 LPLVLGPTAMRKYLPTYRSYNDSVDPRIANVFTNAFRYGHTLIQPFMFRLDNRYQPMEPN 244
Query: 1682 ------------------NMIDEMMRGLAGTP--MENLDQFVTGEITNHLFEEKGRPHSG 1721
ID ++RGL TP + +Q EI LFE+ R G
Sbjct: 245 PRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMR--IG 302
Query: 1722 VDLPALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIAR-FRRIYASPDDV 1780
+DLPALN+QR+RDHG+P YN +R C L + +T L + + +AR Y +P+++
Sbjct: 303 LDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNI 362
Query: 1781 DLFPGGLSERPVAGGMVGPTFACIIGLQFRQLRKCDRFWYETDDPVIRFTEPQLQEIRKA 1840
D++ GG+SE G VGP ACIIG QFR+LR DRFW+E + F+ Q Q
Sbjct: 363 DIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENEGV---FSMQQRQ----- 414
Query: 1841 TLAKEIKKATLAKVICANMDYPGEITNHLFEEKGRPHSGVD---LPALNIQRARD 1892
+ + +L ++IC N N++F P V+ LPALN+ R+
Sbjct: 415 ----ALAQISLPRIICDNTGITTVSKNNIFMSNSYPRDFVNCSTLPALNLASWRE 465
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 66/109 (60%), Gaps = 5/109 (4%)
Query: 1337 IDEMMRGLAGTP--MENLDQFVTGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYN 1394
ID ++RGL TP + +Q EI LFE+ R G+DLPALN+QR+RDHG+P YN
Sbjct: 265 IDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMR--IGLDLPALNMQRSRDHGLPGYN 322
Query: 1395 EYRALCNLKKAKTWADLSREIPDEVIAR-FRRIYASPDDVDLFPGGLSE 1442
+R C L + +T L + + +AR Y +P+++D++ GG+SE
Sbjct: 323 AWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSE 371
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 60/100 (60%), Gaps = 3/100 (3%)
Query: 1849 ATLAKVICANMDYPGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLK 1908
AT AK+ N EI LFE+ R G+DLPALN+QR+RDHG+P YN +R C L
Sbjct: 274 ATPAKLNRQNQIAVDEIRERLFEQVMR--IGLDLPALNMQRSRDHGLPGYNAWRRFCGLP 331
Query: 1909 KAKTWADLSREIPDEVIAR-FRRIYASPDDVDLFPGGLSE 1947
+ +T L + + +AR Y +P+++D++ GG+SE
Sbjct: 332 QPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSE 371
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 45/148 (30%)
Query: 104 ANTTTAKKVVNQATGFLDGSKIYGSDSILSRTQYGAYLQ--------------------- 142
+ T + +N T F+D S +YGS+ L+R Q
Sbjct: 43 GSNITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFD 102
Query: 143 ------CVSCNSPSNL------------------MYKLFELEHNRLVTELAEVNPDWSED 178
C+ N + + M+ L EHNRL TEL +NP W +
Sbjct: 103 NLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGE 162
Query: 179 VLFEEARSIVIAQIQHVTYDEYLPVLIG 206
L++EAR IV A +Q +TY +YLP+++G
Sbjct: 163 RLYQEARKIVGAMVQIITYRDYLPLVLG 190
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 1 MYKLFELEHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIGEVA 57
M+ L EHNRL TEL +NP W + L++EAR IV A +Q +TY +YLP+++G A
Sbjct: 137 MHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLGPTA 193
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 245 ECVNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 282
+ +NP W L +EAR IV A +Q +TY +YLP+++G
Sbjct: 153 KSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLG 190
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 283 ECVNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 320
+ +NP W L +EAR IV A +Q +TY +YLP+++G
Sbjct: 153 KSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLG 190
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 321 ECVNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 358
+ +NP W L +EAR IV A +Q +TY +YLP+++G
Sbjct: 153 KSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLG 190
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 359 ECVNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 396
+ +NP W L +EAR IV A +Q +TY +YLP+++G
Sbjct: 153 KSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLG 190
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 397 ECVNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 434
+ +NP W L +EAR IV A +Q +TY +YLP+++G
Sbjct: 153 KSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLG 190
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 435 ECVNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 472
+ +NP W L +EAR IV A +Q +TY +YLP+++G
Sbjct: 153 KSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLG 190
Score = 38.1 bits (87), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 1195 LKLSPTGY------YKGYNDNCKPNIMTEFATAAYRIGHSLLRPFILPCTNEKGTMQQN 1247
L L PT Y+ YND+ P I F T A+R GH+L++PF+ N M+ N
Sbjct: 187 LVLGPTAMRKYLPTYRSYNDSVDPRIANVF-TNAFRYGHTLIQPFMFRLDNRYQPMEPN 244
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 1594 CDSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRS 1634
C++ P C P+ IP DP R + C+PF RS
Sbjct: 3 CETSCVQQPPCFPLKIPPNDP------RIKNQADCIPFFRS 37
>pdb|3F9P|C Chain C, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3F9P|D Chain D, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3ZS0|C Chain C, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS0|D Chain D, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS1|C Chain C, Human Myeloperoxidase Inactivated By Tx5
pdb|3ZS1|D Chain D, Human Myeloperoxidase Inactivated By Tx5
Length = 467
Score = 175 bits (443), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 141/448 (31%), Positives = 216/448 (48%), Gaps = 79/448 (17%)
Query: 676 CDSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRSLSGQQG--FGPREQINQNS 733
C++ P C P+ IP DP R + C+PF RS G R QIN +
Sbjct: 3 CETSCVQQPPCFPLKIPPNDP------RIKNQADCIPFFRSXPACPGSNITIRNQINALT 56
Query: 734 AYLDGSLIYGEHACQAKDLRSYDGKLNVTLMPGR-----KDLLPNTPTHPE-C----RSR 783
+++D S++YG A++LR+ +L + + R + LLP H + C RS
Sbjct: 57 SFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSA 116
Query: 784 Y--CFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQW 841
CF+AGD R+SE P LT+MHT+L+REHNRLA +L +NP W+ E+L+Q AR+I+
Sbjct: 117 RIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMV 176
Query: 842 QHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIGHSLLRP 901
Q I Y ++LP +LG A+ Y PT Y+ YND+ P I F T A+R GH+L++P
Sbjct: 177 QIITYRDYLPLVLGPTAMRKY----LPT--YRSYNDSVDPRIANVF-TNAFRYGHTLIQP 229
Query: 902 FI-------------PRLVIARFRRIYASPDDVDLFPGGLSERPVAARLRRIYASPDDVD 948
F+ PR+ ++R +AS V GG+ P+ LR + A+P ++
Sbjct: 230 FMFRLDNRYQPMEPNPRVPLSRV--FFASWRVV--LEGGID--PI---LRGLMATPAKLN 280
Query: 949 LFPGGLSEQPVAVIVRFRRIYASPDDVDL-FPGGLSER------PVAARLRRIYASPDDV 1001
+ +AV R++ + L P +R P RR P
Sbjct: 281 ------RQNQIAVDEIRERLFEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLP--- 331
Query: 1002 DLFPGGLSERPVAVGTLSFKLHCLKGYRTFEKKSCEKTHTNIDNVDLLIGGLLENSEPGS 1061
+P VG L L LK R ++ + +N+D+ +GG+ E +
Sbjct: 332 ---------QPETVGQLGTVLRNLKLARKLMEQ-----YGTPNNIDIWMGGVSEPLKRKG 377
Query: 1062 ALGITFSCLLARQFSVLKDSDRFWYEND 1089
+G +C++ QF L+D DRFW+EN+
Sbjct: 378 RVGPLLACIIGTQFRKLRDGDRFWWENE 405
Score = 137 bits (345), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 93/295 (31%), Positives = 140/295 (47%), Gaps = 45/295 (15%)
Query: 1629 LPFMRSLSGKKTGEPSYYTYHTLIE---GTVTAEVLSDGHVLLRDHFFNPDLIYKP---- 1681
LP + + + P+Y +Y+ ++ V GH L++ F D Y+P
Sbjct: 185 LPLVLGPTAMRKYLPTYRSYNDSVDPRIANVFTNAFRYGHTLIQPFMFRLDNRYQPMEPN 244
Query: 1682 ------------------NMIDEMMRGLAGTP--MENLDQFVTGEITNHLFEEKGRPHSG 1721
ID ++RGL TP + +Q EI LFE+ R G
Sbjct: 245 PRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMR--IG 302
Query: 1722 VDLPALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIAR-FRRIYASPDDV 1780
+DLPALN+QR+RDHG+P YN +R C L + +T L + + +AR Y +P+++
Sbjct: 303 LDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNI 362
Query: 1781 DLFPGGLSERPVAGGMVGPTFACIIGLQFRQLRKCDRFWYETDDPVIRFTEPQLQEIRKA 1840
D++ GG+SE G VGP ACIIG QFR+LR DRFW+E + F+ Q Q
Sbjct: 363 DIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENEGV---FSMQQRQ----- 414
Query: 1841 TLAKEIKKATLAKVICANMDYPGEITNHLFEEKGRPHSGVD---LPALNIQRARD 1892
+ + +L ++IC N N++F P V+ LPALN+ R+
Sbjct: 415 ----ALAQISLPRIICDNTGITTVSKNNIFMSNSYPRDFVNCSTLPALNLASWRE 465
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 66/109 (60%), Gaps = 5/109 (4%)
Query: 1337 IDEMMRGLAGTP--MENLDQFVTGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYN 1394
ID ++RGL TP + +Q EI LFE+ R G+DLPALN+QR+RDHG+P YN
Sbjct: 265 IDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMR--IGLDLPALNMQRSRDHGLPGYN 322
Query: 1395 EYRALCNLKKAKTWADLSREIPDEVIAR-FRRIYASPDDVDLFPGGLSE 1442
+R C L + +T L + + +AR Y +P+++D++ GG+SE
Sbjct: 323 AWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSE 371
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 60/100 (60%), Gaps = 3/100 (3%)
Query: 1849 ATLAKVICANMDYPGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLK 1908
AT AK+ N EI LFE+ R G+DLPALN+QR+RDHG+P YN +R C L
Sbjct: 274 ATPAKLNRQNQIAVDEIRERLFEQVMR--IGLDLPALNMQRSRDHGLPGYNAWRRFCGLP 331
Query: 1909 KAKTWADLSREIPDEVIAR-FRRIYASPDDVDLFPGGLSE 1947
+ +T L + + +AR Y +P+++D++ GG+SE
Sbjct: 332 QPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSE 371
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 45/148 (30%)
Query: 104 ANTTTAKKVVNQATGFLDGSKIYGSDSILSRTQYGAYLQ--------------------- 142
+ T + +N T F+D S +YGS+ L+R Q
Sbjct: 43 GSNITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFD 102
Query: 143 ------CVSCNSPSNL------------------MYKLFELEHNRLVTELAEVNPDWSED 178
C+ N + + M+ L EHNRL TEL +NP W +
Sbjct: 103 NLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGE 162
Query: 179 VLFEEARSIVIAQIQHVTYDEYLPVLIG 206
L++EAR IV A +Q +TY +YLP+++G
Sbjct: 163 RLYQEARKIVGAMVQIITYRDYLPLVLG 190
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 1 MYKLFELEHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIGEVA 57
M+ L EHNRL TEL +NP W + L++EAR IV A +Q +TY +YLP+++G A
Sbjct: 137 MHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLGPTA 193
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 245 ECVNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 282
+ +NP W L +EAR IV A +Q +TY +YLP+++G
Sbjct: 153 KSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLG 190
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 283 ECVNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 320
+ +NP W L +EAR IV A +Q +TY +YLP+++G
Sbjct: 153 KSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLG 190
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 321 ECVNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 358
+ +NP W L +EAR IV A +Q +TY +YLP+++G
Sbjct: 153 KSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLG 190
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 359 ECVNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 396
+ +NP W L +EAR IV A +Q +TY +YLP+++G
Sbjct: 153 KSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLG 190
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 397 ECVNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 434
+ +NP W L +EAR IV A +Q +TY +YLP+++G
Sbjct: 153 KSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLG 190
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 435 ECVNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 472
+ +NP W L +EAR IV A +Q +TY +YLP+++G
Sbjct: 153 KSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLG 190
Score = 38.1 bits (87), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 1195 LKLSPTGY------YKGYNDNCKPNIMTEFATAAYRIGHSLLRPFILPCTNEKGTMQQN 1247
L L PT Y+ YND+ P I F T A+R GH+L++PF+ N M+ N
Sbjct: 187 LVLGPTAMRKYLPTYRSYNDSVDPRIANVF-TNAFRYGHTLIQPFMFRLDNRYQPMEPN 244
Score = 30.8 bits (68), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 1594 CDSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRS 1634
C++ P C P+ IP DP R + C+PF RS
Sbjct: 3 CETSCVQQPPCFPLKIPPNDP------RIKNQADCIPFFRS 37
>pdb|2IKC|A Chain A, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
pdb|2IKC|B Chain B, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
Length = 595
Score = 174 bits (441), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 125/371 (33%), Positives = 180/371 (48%), Gaps = 48/371 (12%)
Query: 564 PAEPCDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTP----RVHSVSGA 619
P CD SP+RTI+G CNN + G + +R LP+ YED ++ P + + +G
Sbjct: 11 PLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLAVPFGWTQRKTRNGF 70
Query: 620 PLPTARLVSAMVHADISH---LSNRYSLMVMQLAQTIDHDLTFTPVYRGFFTSIPDCRPC 676
+P AR VS + + L SL+ MQ Q +DHDL F P +S C
Sbjct: 71 RVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETE-LGSSEHSKVQC 129
Query: 677 DSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRSLSGQQGFG---------PRE 727
+ C PI P DP +T G+ C+PF R+ GF R+
Sbjct: 130 EEYCIQGDNCFPIMFPKNDPKL----KTQGK--CMPFFRA-----GFVCPTPPYQSLARD 178
Query: 728 QINQNSAYLDGSLIYGEHACQAKDLRSYDGKLNVTLM-----------PGRKDLLPNTPT 776
QIN +++LD SL+YG A LR+ L + + P ++ P+
Sbjct: 179 QINSVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYPPFNNMKPSPCE 238
Query: 777 HPECRSRY-CFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARR 835
+R CF AGD RASEQ L +HT+L+REHNRLA +L ++NPHW+ E+L+Q AR+
Sbjct: 239 FINTTARVPCFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPHWDGEKLYQEARK 298
Query: 836 IMVGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIG 895
I+ Q I + ++LP +LG K P Y+GYN++ P I F T A+R G
Sbjct: 299 ILGAFIQIITFRDYLPIVLGSEMQ-----KWIPR--YQGYNNSVDPRISNVF-TFAFRFG 350
Query: 896 HSLLRPFIPRL 906
H + + RL
Sbjct: 351 HMEVPSTVSRL 361
Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 125/218 (57%), Gaps = 17/218 (7%)
Query: 1672 FFNPDLIYKPNMIDEMMRGLAG--TPMENLDQFVTGEITNHLFEEKGRPHSGVDLPALNI 1729
FFN I K ID ++RGL + + N ++ VT E+ N LF+ + H G DL A+N+
Sbjct: 380 FFNTWRIIKDGGIDPLVRGLLAKKSKLMNQNKMVTSELRNKLFQPTHKIH-GFDLAAINL 438
Query: 1730 QRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIAR-FRRIYASPDDVDLFPGGLS 1788
QR RDHG+P YN +R C L + KT L + ++++A+ +Y +PD++D++ GG +
Sbjct: 439 QRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKILAKKLLDLYKTPDNIDIWIGGNA 498
Query: 1789 ERPVAGGMVGPTFACIIGLQFRQLRKCDRFWYETDDPVIRFTEPQLQEIRKATLAKEIKK 1848
E V G VGP AC++G QF+Q+R DRFW+E +P + FTE Q ++K
Sbjct: 499 EPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE--NPGV-FTEKQ---------RDSLQK 546
Query: 1849 ATLAKVICANMDYPGEITNHLFEEKGRPHSGVDLPALN 1886
+ +++IC N + ++ H F+ PH VD A++
Sbjct: 547 VSFSRLICDNT-HITKVPLHAFQANNYPHDFVDCSAID 583
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 73/121 (60%), Gaps = 4/121 (3%)
Query: 1325 FFNPDLIYKPNMIDEMMRGLAG--TPMENLDQFVTGEITNHLFEEKGRPHSGVDLPALNI 1382
FFN I K ID ++RGL + + N ++ VT E+ N LF+ + H G DL A+N+
Sbjct: 380 FFNTWRIIKDGGIDPLVRGLLAKKSKLMNQNKMVTSELRNKLFQPTHKIH-GFDLAAINL 438
Query: 1383 QRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIA-RFRRIYASPDDVDLFPGGLS 1441
QR RDHG+P YN +R C L + KT L + ++++A + +Y +PD++D++ GG +
Sbjct: 439 QRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKILAKKLLDLYKTPDNIDIWIGGNA 498
Query: 1442 E 1442
E
Sbjct: 499 E 499
Score = 77.4 bits (189), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 74/160 (46%), Gaps = 14/160 (8%)
Query: 1482 PAEPCDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTP----RVHSVSGA 1537
P CD SP+RTI+G CNN + G + +R LP+ YED ++ P + + +G
Sbjct: 11 PLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLAVPFGWTQRKTRNGF 70
Query: 1538 PLPTARLVSAMVHADISH---LSNRYSLMVMQLAQTIDHDLTFTPVYRGFFTSIPDCRPC 1594
+P AR VS + + L SL+ MQ Q +DHDL F P +S C
Sbjct: 71 RVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETE-LGSSEHSKVQC 129
Query: 1595 DSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRS 1634
+ C PI P DP +T G+ C+PF R+
Sbjct: 130 EEYCIQGDNCFPIMFPKNDPKL----KTQGK--CMPFFRA 163
Score = 73.9 bits (180), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 60/100 (60%), Gaps = 2/100 (2%)
Query: 1849 ATLAKVICANMDYPGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLK 1908
A +K++ N E+ N LF+ + H G DL A+N+QR RDHG+P YN +R C L
Sbjct: 401 AKKSKLMNQNKMVTSELRNKLFQPTHKIH-GFDLAAINLQRCRDHGMPGYNSWRGFCGLS 459
Query: 1909 KAKTWADLSREIPDEVIA-RFRRIYASPDDVDLFPGGLSE 1947
+ KT L + ++++A + +Y +PD++D++ GG +E
Sbjct: 460 QPKTLKGLQAVLKNKILAKKLLDLYKTPDNIDIWIGGNAE 499
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 1 MYKLFELEHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
++ L EHNRL EL +NP W + L++EAR I+ A IQ +T+ +YLP+++G
Sbjct: 265 VHTLLLREHNRLARELKRLNPHWDGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 153 MYKLFELEHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
++ L EHNRL EL +NP W + L++EAR I+ A IQ +T+ +YLP+++G
Sbjct: 265 VHTLLLREHNRLARELKRLNPHWDGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 1044 DNVDLLIGGLLENSEPGSALGITFSCLLARQFSVLKDSDRFWYEN 1088
DN+D+ IGG E +G +CLL RQF ++D DRFW+EN
Sbjct: 488 DNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWEN 532
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 23/153 (15%)
Query: 107 TTAKKVVNQATGFLDGSKIYGSD-SILSRTQYGAYLQCVSCNSPSNLMYKLFE-LEHNRL 164
+ A+ +N T FLD S +YGS+ S+ SR + + +SP LM E +H
Sbjct: 174 SLARDQINSVTSFLDASLVYGSEPSLASRLR--------NLSSPLGLMAVNQEAWDHGLA 225
Query: 165 VTELAEVNPDWSEDV-------LFEEARSIVIAQIQHVTYDEYL----PVLIGEC--VNP 211
+ P E + F+ S QI T L L E +NP
Sbjct: 226 YPPFNNMKPSPCEFINTTARVPCFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNP 285
Query: 212 DWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 244
W L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 286 HWDGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 15/125 (12%)
Query: 437 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGENVDVDDLLESVNLILQEQSEKPN 496
+NP W L +EAR I+ A IQ +T+ +YLP+++G E I + Q +
Sbjct: 283 LNPHWDGEKLYQEARKILGAFIQIITFRDYLPIVLGS--------EMQKWIPRYQGYNNS 334
Query: 497 ISP--DQMMRRLARWSPIQIPTTRNVGELDEQIDRRVTESA---GSQIFNFIDDLNKAGF 551
+ P + R+ +++P+T V LDE R E+ + FN + G
Sbjct: 335 VDPRISNVFTFAFRFGHMEVPST--VSRLDENYQPRGPEAELPLHTLFFNTWRIIKDGGI 392
Query: 552 LPPIR 556
P +R
Sbjct: 393 DPLVR 397
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 285 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 320
+NP W L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWDGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 323 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 358
+NP W L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWDGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 361 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 396
+NP W L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWDGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 399 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 434
+NP W L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWDGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
>pdb|3R5Q|A Chain A, Crystal Structure Of Sheep Lactoperoxidase In Complex With
Tetrahydrofuran At 2.7 A Resolution
Length = 595
Score = 174 bits (440), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 125/371 (33%), Positives = 180/371 (48%), Gaps = 48/371 (12%)
Query: 564 PAEPCDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTP----RVHSVSGA 619
P CD SP+RTI+G CNN + G + +R LP+ YED ++ P + + +G
Sbjct: 11 PLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLAVPFGWTQRKTRNGF 70
Query: 620 PLPTARLVSAMVHADISH---LSNRYSLMVMQLAQTIDHDLTFTPVYRGFFTSIPDCRPC 676
+P AR VS + + L SL+ MQ Q +DHDL F P +S C
Sbjct: 71 RVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETE-LGSSEHSKVQC 129
Query: 677 DSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRSLSGQQGFG---------PRE 727
+ C PI P DP +T G+ C+PF R+ GF R+
Sbjct: 130 EEYCIQGDNCFPIMFPKNDPKL----KTQGK--CMPFFRA-----GFVCPTPPYQSLARD 178
Query: 728 QINQNSAYLDGSLIYGEHACQAKDLRSYDGKLNVTLM-----------PGRKDLLPNTPT 776
QIN +++LD SL+YG A LR+ L + + P ++ P+
Sbjct: 179 QINSVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAVNQEAWDHGLAYPPFNNMKPSPCE 238
Query: 777 HPECRSRY-CFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARR 835
+R CF AGD RASEQ L +HT+L+REHNRLA +L ++NPHW+ E+L+Q AR+
Sbjct: 239 FINTTARVPCFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPHWDGEKLYQEARK 298
Query: 836 IMVGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIG 895
I+ Q I + ++LP +LG K P Y+GYN++ P I F T A+R G
Sbjct: 299 ILGAFIQIITFRDYLPIVLGSEMQ-----KWIPR--YQGYNNSVDPRISNVF-TFAFRFG 350
Query: 896 HSLLRPFIPRL 906
H + + RL
Sbjct: 351 HMEVPSTVSRL 361
Score = 139 bits (351), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 125/218 (57%), Gaps = 17/218 (7%)
Query: 1672 FFNPDLIYKPNMIDEMMRGLAG--TPMENLDQFVTGEITNHLFEEKGRPHSGVDLPALNI 1729
FFN I K ID ++RGL + + N ++ VT E+ N LF+ + H G DL A+N+
Sbjct: 380 FFNTWRIIKDGGIDPLVRGLLAKKSKLMNQNKMVTSELRNKLFQPTHKIH-GFDLAAINL 438
Query: 1730 QRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIAR-FRRIYASPDDVDLFPGGLS 1788
QR RDHG+P YN +R C L + KT L + ++++A+ +Y +PD++D++ GG +
Sbjct: 439 QRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKILAKKLLDLYKTPDNIDIWIGGNA 498
Query: 1789 ERPVAGGMVGPTFACIIGLQFRQLRKCDRFWYETDDPVIRFTEPQLQEIRKATLAKEIKK 1848
E V G VGP AC++G QF+Q+R DRFW+E +P + FTE Q ++K
Sbjct: 499 EPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE--NPGV-FTEKQ---------RDSLQK 546
Query: 1849 ATLAKVICANMDYPGEITNHLFEEKGRPHSGVDLPALN 1886
+ +++IC N + ++ H F+ PH VD A++
Sbjct: 547 VSFSRLICDNT-HITKVPLHAFQANNYPHDFVDCSAID 583
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 73/121 (60%), Gaps = 4/121 (3%)
Query: 1325 FFNPDLIYKPNMIDEMMRGLAG--TPMENLDQFVTGEITNHLFEEKGRPHSGVDLPALNI 1382
FFN I K ID ++RGL + + N ++ VT E+ N LF+ + H G DL A+N+
Sbjct: 380 FFNTWRIIKDGGIDPLVRGLLAKKSKLMNQNKMVTSELRNKLFQPTHKIH-GFDLAAINL 438
Query: 1383 QRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIA-RFRRIYASPDDVDLFPGGLS 1441
QR RDHG+P YN +R C L + KT L + ++++A + +Y +PD++D++ GG +
Sbjct: 439 QRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKILAKKLLDLYKTPDNIDIWIGGNA 498
Query: 1442 E 1442
E
Sbjct: 499 E 499
Score = 77.4 bits (189), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 74/160 (46%), Gaps = 14/160 (8%)
Query: 1482 PAEPCDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTP----RVHSVSGA 1537
P CD SP+RTI+G CNN + G + +R LP+ YED ++ P + + +G
Sbjct: 11 PLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLAVPFGWTQRKTRNGF 70
Query: 1538 PLPTARLVSAMVHADISH---LSNRYSLMVMQLAQTIDHDLTFTPVYRGFFTSIPDCRPC 1594
+P AR VS + + L SL+ MQ Q +DHDL F P +S C
Sbjct: 71 RVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETE-LGSSEHSKVQC 129
Query: 1595 DSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRS 1634
+ C PI P DP +T G+ C+PF R+
Sbjct: 130 EEYCIQGDNCFPIMFPKNDPKL----KTQGK--CMPFFRA 163
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 60/100 (60%), Gaps = 2/100 (2%)
Query: 1849 ATLAKVICANMDYPGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLK 1908
A +K++ N E+ N LF+ + H G DL A+N+QR RDHG+P YN +R C L
Sbjct: 401 AKKSKLMNQNKMVTSELRNKLFQPTHKIH-GFDLAAINLQRCRDHGMPGYNSWRGFCGLS 459
Query: 1909 KAKTWADLSREIPDEVIA-RFRRIYASPDDVDLFPGGLSE 1947
+ KT L + ++++A + +Y +PD++D++ GG +E
Sbjct: 460 QPKTLKGLQAVLKNKILAKKLLDLYKTPDNIDIWIGGNAE 499
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 1 MYKLFELEHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
++ L EHNRL EL +NP W + L++EAR I+ A IQ +T+ +YLP+++G
Sbjct: 265 VHTLLLREHNRLARELKRLNPHWDGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 153 MYKLFELEHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
++ L EHNRL EL +NP W + L++EAR I+ A IQ +T+ +YLP+++G
Sbjct: 265 VHTLLLREHNRLARELKRLNPHWDGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 1044 DNVDLLIGGLLENSEPGSALGITFSCLLARQFSVLKDSDRFWYEN 1088
DN+D+ IGG E +G +CLL RQF ++D DRFW+EN
Sbjct: 488 DNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWEN 532
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 21/152 (13%)
Query: 107 TTAKKVVNQATGFLDGSKIYGSDSILSRTQYGAYLQCVSCNSPSNLMYKLFE-LEHNRLV 165
+ A+ +N T FLD S +YGS+ L+ + + +SP LM E +H
Sbjct: 174 SLARDQINSVTSFLDASLVYGSEPXLAS-------RLRNLSSPLGLMAVNQEAWDHGLAY 226
Query: 166 TELAEVNPDWSEDV-------LFEEARSIVIAQIQHVTYDEYL----PVLIGEC--VNPD 212
+ P E + F+ S QI T L L E +NP
Sbjct: 227 PPFNNMKPSPCEFINTTARVPCFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPH 286
Query: 213 WSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 244
W L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 287 WDGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 15/125 (12%)
Query: 437 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGENVDVDDLLESVNLILQEQSEKPN 496
+NP W L +EAR I+ A IQ +T+ +YLP+++G E I + Q +
Sbjct: 283 LNPHWDGEKLYQEARKILGAFIQIITFRDYLPIVLGS--------EMQKWIPRYQGYNNS 334
Query: 497 ISP--DQMMRRLARWSPIQIPTTRNVGELDEQIDRRVTESA---GSQIFNFIDDLNKAGF 551
+ P + R+ +++P+T V LDE R E+ + FN + G
Sbjct: 335 VDPRISNVFTFAFRFGHMEVPST--VSRLDENYQPRGPEAELPLHTLFFNTWRIIKDGGI 392
Query: 552 LPPIR 556
P +R
Sbjct: 393 DPLVR 397
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 285 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 320
+NP W L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWDGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 323 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 358
+NP W L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWDGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 361 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 396
+NP W L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWDGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 399 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 434
+NP W L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWDGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
>pdb|2E9E|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2E9E|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2OJV|A Chain A, Crystal Structure Of A Ternary Complex Of Goat
Lactoperoxidase With Cyanide And Iodide Ions At 2.4 A
Resolution
pdb|2EFB|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EFB|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EHA|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
pdb|2EHA|B Chain B, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
Length = 595
Score = 173 bits (438), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 128/376 (34%), Positives = 180/376 (47%), Gaps = 58/376 (15%)
Query: 564 PAEPCDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTP----RVHSVSGA 619
P CD SP+RTI+G CNN + G + +R LP+ YED ++ P + + +G
Sbjct: 11 PLVTCDEQSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLAVPFGWTQRKTRNGF 70
Query: 620 PLPTARLVSAMVHADISH---LSNRYSLMVMQLAQTIDHDLTFTPVYRGFFTSIPDCRPC 676
+P AR VS + + L SL+ MQ Q +DHDL F P +S C
Sbjct: 71 RVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETE-LGSSEHSKVQC 129
Query: 677 DSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRSLSGQQGFG---------PRE 727
+ EC PI P DP +T G+ C+PF R+ GF R+
Sbjct: 130 EEYCVQGDECFPIMFPKNDPKL----KTQGK--CMPFFRA-----GFVCPTPPYQSLARD 178
Query: 728 QINQNSAYLDGSLIYGEHACQAKDLRSYDGKLNVTLM-----------PGRKDLLP---- 772
QIN +++LD SL+YG A LR+ L + + P ++ P
Sbjct: 179 QINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYPPFNNVKPSPCE 238
Query: 773 --NTPTHPECRSRYCFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLF 830
NT H C F AGD RASEQ L +HT+L+REHNRLA +L ++NPHW+ E L+
Sbjct: 239 FINTTAHVPC-----FQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPHWDGEMLY 293
Query: 831 QHARRIMVGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATA 890
Q AR+I+ Q I + ++LP +LG K P Y+GYN++ P I F T
Sbjct: 294 QEARKILGAFIQIITFRDYLPIVLGSEMQ-----KWIPP--YQGYNNSVDPRISNVF-TF 345
Query: 891 AYRIGHSLLRPFIPRL 906
A+R GH + + RL
Sbjct: 346 AFRFGHMEVPSTVSRL 361
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 125/218 (57%), Gaps = 17/218 (7%)
Query: 1672 FFNPDLIYKPNMIDEMMRGL--AGTPMENLDQFVTGEITNHLFEEKGRPHSGVDLPALNI 1729
FFN I K ID ++RGL + + N ++ VT E+ N LF+ + H G DL A+N+
Sbjct: 380 FFNTWRIIKDGGIDPLVRGLLAKNSKLMNQNKMVTSELRNKLFQPTHKVH-GFDLAAINL 438
Query: 1730 QRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIAR-FRRIYASPDDVDLFPGGLS 1788
QR RDHG+P YN +R C L + KT L + ++V+A+ +Y +PD++D++ GG +
Sbjct: 439 QRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKVLAKKLLDLYKTPDNIDIWIGGNA 498
Query: 1789 ERPVAGGMVGPTFACIIGLQFRQLRKCDRFWYETDDPVIRFTEPQLQEIRKATLAKEIKK 1848
E V G VGP AC++G QF+Q+R DRFW+E +P + FTE Q ++K
Sbjct: 499 EPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE--NPGV-FTEKQ---------RDSLQK 546
Query: 1849 ATLAKVICANMDYPGEITNHLFEEKGRPHSGVDLPALN 1886
+ +++IC N + ++ H F+ PH VD A++
Sbjct: 547 VSFSRLICDNT-HITKVPLHAFQANNYPHDFVDCSAVD 583
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 73/121 (60%), Gaps = 4/121 (3%)
Query: 1325 FFNPDLIYKPNMIDEMMRGL--AGTPMENLDQFVTGEITNHLFEEKGRPHSGVDLPALNI 1382
FFN I K ID ++RGL + + N ++ VT E+ N LF+ + H G DL A+N+
Sbjct: 380 FFNTWRIIKDGGIDPLVRGLLAKNSKLMNQNKMVTSELRNKLFQPTHKVH-GFDLAAINL 438
Query: 1383 QRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIA-RFRRIYASPDDVDLFPGGLS 1441
QR RDHG+P YN +R C L + KT L + ++V+A + +Y +PD++D++ GG +
Sbjct: 439 QRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKVLAKKLLDLYKTPDNIDIWIGGNA 498
Query: 1442 E 1442
E
Sbjct: 499 E 499
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 75/160 (46%), Gaps = 14/160 (8%)
Query: 1482 PAEPCDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTP----RVHSVSGA 1537
P CD SP+RTI+G CNN + G + +R LP+ YED ++ P + + +G
Sbjct: 11 PLVTCDEQSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLAVPFGWTQRKTRNGF 70
Query: 1538 PLPTARLVSAMVHADISH---LSNRYSLMVMQLAQTIDHDLTFTPVYRGFFTSIPDCRPC 1594
+P AR VS + + L SL+ MQ Q +DHDL F P +S C
Sbjct: 71 RVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETE-LGSSEHSKVQC 129
Query: 1595 DSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRS 1634
+ EC PI P DP +T G+ C+PF R+
Sbjct: 130 EEYCVQGDECFPIMFPKNDPKL----KTQGK--CMPFFRA 163
Score = 74.3 bits (181), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 60/100 (60%), Gaps = 2/100 (2%)
Query: 1849 ATLAKVICANMDYPGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLK 1908
A +K++ N E+ N LF+ + H G DL A+N+QR RDHG+P YN +R C L
Sbjct: 401 AKNSKLMNQNKMVTSELRNKLFQPTHKVH-GFDLAAINLQRCRDHGMPGYNSWRGFCGLS 459
Query: 1909 KAKTWADLSREIPDEVIA-RFRRIYASPDDVDLFPGGLSE 1947
+ KT L + ++V+A + +Y +PD++D++ GG +E
Sbjct: 460 QPKTLKGLQAVLKNKVLAKKLLDLYKTPDNIDIWIGGNAE 499
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 38/54 (70%)
Query: 1 MYKLFELEHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
++ L EHNRL EL +NP W ++L++EAR I+ A IQ +T+ +YLP+++G
Sbjct: 265 VHTLLLREHNRLARELKRLNPHWDGEMLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 38/54 (70%)
Query: 153 MYKLFELEHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
++ L EHNRL EL +NP W ++L++EAR I+ A IQ +T+ +YLP+++G
Sbjct: 265 VHTLLLREHNRLARELKRLNPHWDGEMLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 1044 DNVDLLIGGLLENSEPGSALGITFSCLLARQFSVLKDSDRFWYEN 1088
DN+D+ IGG E +G +CLL RQF ++D DRFW+EN
Sbjct: 488 DNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWEN 532
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 68/153 (44%), Gaps = 23/153 (15%)
Query: 107 TTAKKVVNQATGFLDGSKIYGSD-SILSRTQYGAYLQCVSCNSPSNLMYKLFE-LEHNRL 164
+ A+ +N T FLD S +YGS+ S+ SR + + +SP LM E +H
Sbjct: 174 SLARDQINAVTSFLDASLVYGSEPSLASRLR--------NLSSPLGLMAVNQEAWDHGLA 225
Query: 165 VTELAEVNPDWSEDV-------LFEEARSIVIAQIQHVTYDEYL----PVLIGEC--VNP 211
V P E + F+ S QI T L L E +NP
Sbjct: 226 YPPFNNVKPSPCEFINTTAHVPCFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNP 285
Query: 212 DWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 244
W +L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 286 HWDGEMLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 437 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGENV 475
+NP W +L +EAR I+ A IQ +T+ +YLP+++G +
Sbjct: 283 LNPHWDGEMLYQEARKILGAFIQIITFRDYLPIVLGSEM 321
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 285 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 320
+NP W +L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWDGEMLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 323 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 358
+NP W +L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWDGEMLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 361 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 396
+NP W +L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWDGEMLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 399 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 434
+NP W +L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWDGEMLYQEARKILGAFIQIITFRDYLPIVLG 318
>pdb|2R5L|A Chain A, Crystal Structure Of Lactoperoxidase At 2.4a Resolution
pdb|3N8F|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3N8F|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3NIU|A Chain A, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NIU|B Chain B, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NAK|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3NAK|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3QF1|A Chain A, Crystal Structure Of The Complex Of Caprine
Lactoperoxidase With Diethylenediamine At 2.6a
Resolution
pdb|3RKE|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With A
Tightly Bound Inhibitor, 4-Aminophenyl-4h-Imidazole-1-Yl
Methanone At 2.3 A Resolution
pdb|3R55|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Pyrazinamide At 2.1 A Resolution
pdb|3SXV|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Amitrole At 2.1 A Resolution
Length = 595
Score = 172 bits (437), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 128/376 (34%), Positives = 180/376 (47%), Gaps = 58/376 (15%)
Query: 564 PAEPCDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTP----RVHSVSGA 619
P CD SP+RTI+G CNN + G + +R LP+ YED ++ P + + +G
Sbjct: 11 PLVTCDEQSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLAVPFGWTQRKTRNGF 70
Query: 620 PLPTARLVSAMVHADISH---LSNRYSLMVMQLAQTIDHDLTFTPVYRGFFTSIPDCRPC 676
+P AR VS + + L SL+ MQ Q +DHDL F P +S C
Sbjct: 71 RVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETE-LGSSEHSKVQC 129
Query: 677 DSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRSLSGQQGFG---------PRE 727
+ EC PI P DP +T G+ C+PF R+ GF R+
Sbjct: 130 EEYCVQGDECFPIMFPKNDPKL----KTQGK--CMPFFRA-----GFVCPTPPYQSLARD 178
Query: 728 QINQNSAYLDGSLIYGEHACQAKDLRSYDGKLNVTLM-----------PGRKDLLP---- 772
QIN +++LD SL+YG A LR+ L + + P ++ P
Sbjct: 179 QINAVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAVNQEAWDHGLAYPPFNNVKPSPCE 238
Query: 773 --NTPTHPECRSRYCFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLF 830
NT H C F AGD RASEQ L +HT+L+REHNRLA +L ++NPHW+ E L+
Sbjct: 239 FINTTAHVPC-----FQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPHWDGEMLY 293
Query: 831 QHARRIMVGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATA 890
Q AR+I+ Q I + ++LP +LG K P Y+GYN++ P I F T
Sbjct: 294 QEARKILGAFIQIITFRDYLPIVLGSEMQ-----KWIPP--YQGYNNSVDPRISNVF-TF 345
Query: 891 AYRIGHSLLRPFIPRL 906
A+R GH + + RL
Sbjct: 346 AFRFGHMEVPSTVSRL 361
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 125/218 (57%), Gaps = 17/218 (7%)
Query: 1672 FFNPDLIYKPNMIDEMMRGL--AGTPMENLDQFVTGEITNHLFEEKGRPHSGVDLPALNI 1729
FFN I K ID ++RGL + + N ++ VT E+ N LF+ + H G DL A+N+
Sbjct: 380 FFNTWRIIKDGGIDPLVRGLLAKNSKLMNQNKMVTSELRNKLFQPTHKVH-GFDLAAINL 438
Query: 1730 QRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIAR-FRRIYASPDDVDLFPGGLS 1788
QR RDHG+P YN +R C L + KT L + ++V+A+ +Y +PD++D++ GG +
Sbjct: 439 QRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKVLAKKLLDLYKTPDNIDIWIGGNA 498
Query: 1789 ERPVAGGMVGPTFACIIGLQFRQLRKCDRFWYETDDPVIRFTEPQLQEIRKATLAKEIKK 1848
E V G VGP AC++G QF+Q+R DRFW+E +P + FTE Q ++K
Sbjct: 499 EPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE--NPGV-FTEKQ---------RDSLQK 546
Query: 1849 ATLAKVICANMDYPGEITNHLFEEKGRPHSGVDLPALN 1886
+ +++IC N + ++ H F+ PH VD A++
Sbjct: 547 VSFSRLICDNT-HITKVPLHAFQANNYPHDFVDCSAVD 583
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 73/121 (60%), Gaps = 4/121 (3%)
Query: 1325 FFNPDLIYKPNMIDEMMRGL--AGTPMENLDQFVTGEITNHLFEEKGRPHSGVDLPALNI 1382
FFN I K ID ++RGL + + N ++ VT E+ N LF+ + H G DL A+N+
Sbjct: 380 FFNTWRIIKDGGIDPLVRGLLAKNSKLMNQNKMVTSELRNKLFQPTHKVH-GFDLAAINL 438
Query: 1383 QRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIA-RFRRIYASPDDVDLFPGGLS 1441
QR RDHG+P YN +R C L + KT L + ++V+A + +Y +PD++D++ GG +
Sbjct: 439 QRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKVLAKKLLDLYKTPDNIDIWIGGNA 498
Query: 1442 E 1442
E
Sbjct: 499 E 499
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 75/160 (46%), Gaps = 14/160 (8%)
Query: 1482 PAEPCDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTP----RVHSVSGA 1537
P CD SP+RTI+G CNN + G + +R LP+ YED ++ P + + +G
Sbjct: 11 PLVTCDEQSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLAVPFGWTQRKTRNGF 70
Query: 1538 PLPTARLVSAMVHADISH---LSNRYSLMVMQLAQTIDHDLTFTPVYRGFFTSIPDCRPC 1594
+P AR VS + + L SL+ MQ Q +DHDL F P +S C
Sbjct: 71 RVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETE-LGSSEHSKVQC 129
Query: 1595 DSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRS 1634
+ EC PI P DP +T G+ C+PF R+
Sbjct: 130 EEYCVQGDECFPIMFPKNDPKL----KTQGK--CMPFFRA 163
Score = 74.3 bits (181), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 60/100 (60%), Gaps = 2/100 (2%)
Query: 1849 ATLAKVICANMDYPGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLK 1908
A +K++ N E+ N LF+ + H G DL A+N+QR RDHG+P YN +R C L
Sbjct: 401 AKNSKLMNQNKMVTSELRNKLFQPTHKVH-GFDLAAINLQRCRDHGMPGYNSWRGFCGLS 459
Query: 1909 KAKTWADLSREIPDEVIA-RFRRIYASPDDVDLFPGGLSE 1947
+ KT L + ++V+A + +Y +PD++D++ GG +E
Sbjct: 460 QPKTLKGLQAVLKNKVLAKKLLDLYKTPDNIDIWIGGNAE 499
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 38/54 (70%)
Query: 1 MYKLFELEHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
++ L EHNRL EL +NP W ++L++EAR I+ A IQ +T+ +YLP+++G
Sbjct: 265 VHTLLLREHNRLARELKRLNPHWDGEMLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 38/54 (70%)
Query: 153 MYKLFELEHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
++ L EHNRL EL +NP W ++L++EAR I+ A IQ +T+ +YLP+++G
Sbjct: 265 VHTLLLREHNRLARELKRLNPHWDGEMLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 1044 DNVDLLIGGLLENSEPGSALGITFSCLLARQFSVLKDSDRFWYEN 1088
DN+D+ IGG E +G +CLL RQF ++D DRFW+EN
Sbjct: 488 DNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWEN 532
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 66/152 (43%), Gaps = 21/152 (13%)
Query: 107 TTAKKVVNQATGFLDGSKIYGSDSILSRTQYGAYLQCVSCNSPSNLMYKLFE-LEHNRLV 165
+ A+ +N T FLD S +YGS+ L+ + + +SP LM E +H
Sbjct: 174 SLARDQINAVTSFLDASLVYGSEPXLAS-------RLRNLSSPLGLMAVNQEAWDHGLAY 226
Query: 166 TELAEVNPDWSEDV-------LFEEARSIVIAQIQHVTYDEYL----PVLIGEC--VNPD 212
V P E + F+ S QI T L L E +NP
Sbjct: 227 PPFNNVKPSPCEFINTTAHVPCFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPH 286
Query: 213 WSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 244
W +L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 287 WDGEMLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 437 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGENV 475
+NP W +L +EAR I+ A IQ +T+ +YLP+++G +
Sbjct: 283 LNPHWDGEMLYQEARKILGAFIQIITFRDYLPIVLGSEM 321
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 285 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 320
+NP W +L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWDGEMLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 323 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 358
+NP W +L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWDGEMLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 361 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 396
+NP W +L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWDGEMLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 399 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 434
+NP W +L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWDGEMLYQEARKILGAFIQIITFRDYLPIVLG 318
>pdb|2IPS|A Chain A, Crystal Structure Of A Ternary Complex Of Bovine
Lactoperoxidase With Thiocyanate And Iodide At 3.1 A
Resolution
pdb|2NQX|A Chain A, Crystal Structure Of Bovine Lactoperoxidase With Iodide
Ions At 2.9a Resolution
Length = 595
Score = 161 bits (407), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 128/371 (34%), Positives = 179/371 (48%), Gaps = 48/371 (12%)
Query: 564 PAEPCDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTP----RVHSVSGA 619
P CD SP+RTI+G CNN + G + +R LP+ YED ++ P + + +G
Sbjct: 11 PLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGF 70
Query: 620 PLPTARLVSAMVHADISH---LSNRYSLMVMQLAQTIDHDLTFTPVYRGFFTSIPDCRPC 676
+P AR VS + + L SL+ MQ Q +DHDL F P ++ C
Sbjct: 71 RVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETE-LGSNEHSKTQC 129
Query: 677 DSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRSLSGQQGFG---------PRE 727
+ C PI P DP +T G+ C+PF R+ GF RE
Sbjct: 130 EEYCIQGDNCFPIMFPKNDPKL----KTQGK--CMPFFRA-----GFVCPTPPYQSLARE 178
Query: 728 QINQNSAYLDGSLIYGEHACQAKDLRSYDGKLNVTLMP------GRKDLLPNTPTHPECR 781
QIN +++LD SL+YG A LR+ L + + G L N C
Sbjct: 179 QINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCE 238
Query: 782 -----SRY-CFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARR 835
+R CF+AGD RASEQ L HT+L+REHNRLA +L ++NPHWN E+L+Q AR+
Sbjct: 239 FINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARK 298
Query: 836 IMVGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIG 895
I+ Q I + ++LP +LG K P Y+GYN++ P I F T A+R G
Sbjct: 299 ILGAFIQIITFRDYLPIVLGSEMQ-----KWIPP--YQGYNNSVDPRISNVF-TFAFRFG 350
Query: 896 HSLLRPFIPRL 906
H + + RL
Sbjct: 351 HMEVPSTVSRL 361
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 122/213 (57%), Gaps = 17/213 (7%)
Query: 1672 FFNPDLIYKPNMIDEMMRGLAG--TPMENLDQFVTGEITNHLFEEKGRPHSGVDLPALNI 1729
FFN I K ID ++RGL + + N D+ VT E+ N LF+ + H G DL A+N+
Sbjct: 380 FFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIH-GFDLAAINL 438
Query: 1730 QRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIAR-FRRIYASPDDVDLFPGGLS 1788
QR RDHG+P YN +R C L + KT L + ++++A+ +Y +PD++D++ GG +
Sbjct: 439 QRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNA 498
Query: 1789 ERPVAGGMVGPTFACIIGLQFRQLRKCDRFWYETDDPVIRFTEPQLQEIRKATLAKEIKK 1848
E V G VGP AC++G QF+Q+R DRFW+E +P + FTE Q ++K
Sbjct: 499 EPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE--NPGV-FTEKQ---------RDSLQK 546
Query: 1849 ATLAKVICANMDYPGEITNHLFEEKGRPHSGVD 1881
+ +++IC N + ++ H F+ PH VD
Sbjct: 547 VSFSRLICDNT-HITKVPLHAFQANNYPHDFVD 578
Score = 90.5 bits (223), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 73/121 (60%), Gaps = 4/121 (3%)
Query: 1325 FFNPDLIYKPNMIDEMMRGLAG--TPMENLDQFVTGEITNHLFEEKGRPHSGVDLPALNI 1382
FFN I K ID ++RGL + + N D+ VT E+ N LF+ + H G DL A+N+
Sbjct: 380 FFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIH-GFDLAAINL 438
Query: 1383 QRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIA-RFRRIYASPDDVDLFPGGLS 1441
QR RDHG+P YN +R C L + KT L + ++++A + +Y +PD++D++ GG +
Sbjct: 439 QRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNA 498
Query: 1442 E 1442
E
Sbjct: 499 E 499
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 74/160 (46%), Gaps = 14/160 (8%)
Query: 1482 PAEPCDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTP----RVHSVSGA 1537
P CD SP+RTI+G CNN + G + +R LP+ YED ++ P + + +G
Sbjct: 11 PLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGF 70
Query: 1538 PLPTARLVSAMVHADISH---LSNRYSLMVMQLAQTIDHDLTFTPVYRGFFTSIPDCRPC 1594
+P AR VS + + L SL+ MQ Q +DHDL F P ++ C
Sbjct: 71 RVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETE-LGSNEHSKTQC 129
Query: 1595 DSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRS 1634
+ C PI P DP +T G+ C+PF R+
Sbjct: 130 EEYCIQGDNCFPIMFPKNDPKL----KTQGK--CMPFFRA 163
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 64/110 (58%), Gaps = 8/110 (7%)
Query: 1839 KATLAKEIKKATLAKVICANMDYPGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSY 1898
+ LAK+ K K++ + E+ N LF+ + H G DL A+N+QR RDHG+P Y
Sbjct: 397 RGLLAKKSKLMNQDKMVTS------ELRNKLFQPTHKIH-GFDLAAINLQRCRDHGMPGY 449
Query: 1899 NEYRALCNLKKAKTWADLSREIPDEVIA-RFRRIYASPDDVDLFPGGLSE 1947
N +R C L + KT L + ++++A + +Y +PD++D++ GG +E
Sbjct: 450 NSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAE 499
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
EHNRL EL ++NP W+ + L++EAR I+ A IQ +T+ +YLP+++G
Sbjct: 272 EHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 160 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
EHNRL EL ++NP W+ + L++EAR I+ A IQ +T+ +YLP+++G
Sbjct: 272 EHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 1025 LKGYRTFEK-----KSCEKTHTNIDNVDLLIGGLLENSEPGSALGITFSCLLARQFSVLK 1079
LKG +T K K + DN+D+ IGG E +G +CLL RQF ++
Sbjct: 464 LKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIR 523
Query: 1080 DSDRFWYEN 1088
D DRFW+EN
Sbjct: 524 DGDRFWWEN 532
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 11/147 (7%)
Query: 107 TTAKKVVNQATGFLDGSKIYGSD-SILSRTQ-YGAYLQCVSCNSPS---NLMYKLFELEH 161
+ A++ +N T FLD S +YGS+ S+ SR + + L ++ N + L Y F +
Sbjct: 174 SLAREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKK 233
Query: 162 ---NRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG-ECVNPDWSEGV 217
+ A V + D F + I++A + E+ + + +NP W+
Sbjct: 234 PSPCEFINTTARVPCFLAGD--FRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEK 291
Query: 218 LSEEARSIVIAQIQHVTYDEYLPVLIG 244
L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 292 LYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 437 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGENV 475
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G +
Sbjct: 283 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSEM 321
Score = 38.5 bits (88), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 247 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 282
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 38.5 bits (88), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 285 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 320
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 38.5 bits (88), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 323 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 358
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 38.5 bits (88), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 361 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 396
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 38.5 bits (88), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 399 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 434
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
>pdb|2PT3|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.34 A
Resolution Reveals Multiple Anion Binding Sites
pdb|2PUM|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complex With
Catechol And Iodide At 2.7 A Resolution
pdb|2QPK|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Salicylhydroxamic Acid At 2.34 A Resolution
pdb|2QQT|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Acetyl Salicylic Acid At 2.5 A Resolution
pdb|2QRB|A Chain A, Crystal Structure Of Chloride Saturated Bovine
Lactoperoxidase At 2.5 A Resolution Shows Multiple
Halide Binding Sites
pdb|3BXI|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Its Catalyzed Product Hypothiocyanate Ion At 2.3a
Resolution
pdb|3ERI|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3GC1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase
pdb|3GCJ|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCK|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCL|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3I6N|A Chain A, Mode Of Binding Of The Tuberculosis Prodrug Isoniazid To
Peroxidases: Crystal Structure Of Bovine Lactoperoxidase
With Isoniazid At 2.7 Resolution
pdb|3KRQ|A Chain A, Crystal Structure Of The Complex Of Lactoperoxidase With A
Potent Inhibitor Amino-Triazole At 2.2a Resolution
pdb|3NYH|A Chain A, Crystal Structure Of Lactoperoxidase Complexed
Simultaneously With Thiocyanate Ion, Iodide Ion, Bromide
Ion, Chloride Ion Through The Substrate Diffusion
Channel Reveals A Preferential Queue Of The Inorganic
Substrates Towards The Distal Heme Cavity
pdb|3OGW|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Indomethacin At 1.9a Resolution
pdb|3PY4|A Chain A, Crystal Structure Of Bovine Lactoperoxidase In Complex
With Paracetamol At 2.4a Resolution
pdb|3Q9K|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Phenyl Isothiocyanate At 1.7 A Resolution
pdb|3QL6|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Nimesulide At 1.7 A Resolution
pdb|3S4F|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 1h- Pyrazolo[4,3-C] Pyridine At 1.99 A Resolution
pdb|3R4X|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Pyrazine-2- Carboxamide At 2 A Resolution
pdb|3R5O|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 4- Allyl-2-Methoxyphenol At 2.6 A Resolution
pdb|3TGY|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Ascorbic Acid At 2.35 A Resolution
pdb|3TUW|A Chain A, Crystal Structure Of Lactoperoxidase Complexed With
Pyrazinamide At 2.2a Resolution
pdb|3UBA|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With P- Hydroxycinnamic Acid At 2.6 A Resolution
pdb|3V6Q|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Carbon Monoxide At 2.0 A Resolution
pdb|4GM7|A Chain A, Structure Of Cinnamic Acid Bound Bovine Lactoperoxidase At
2.6a Resolution.
pdb|4GN6|A Chain A, Structure Of Paracetamol Bound Bovine Lactoperoxidase At
2.45a Resolution
Length = 595
Score = 160 bits (406), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 128/371 (34%), Positives = 179/371 (48%), Gaps = 48/371 (12%)
Query: 564 PAEPCDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTP----RVHSVSGA 619
P CD SP+RTI+G CNN + G + +R LP+ YED ++ P + + +G
Sbjct: 11 PLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGF 70
Query: 620 PLPTARLVSAMVHADISH---LSNRYSLMVMQLAQTIDHDLTFTPVYRGFFTSIPDCRPC 676
+P AR VS + + L SL+ MQ Q +DHDL F P ++ C
Sbjct: 71 RVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETE-LGSNEHSKTQC 129
Query: 677 DSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRSLSGQQGFG---------PRE 727
+ C PI P DP +T G+ C+PF R+ GF RE
Sbjct: 130 EEYCIQGDNCFPIMFPKNDPKL----KTQGK--CMPFFRA-----GFVCPTPPYQSLARE 178
Query: 728 QINQNSAYLDGSLIYGEHACQAKDLRSYDGKLNVTLMP------GRKDLLPNTPTHPECR 781
QIN +++LD SL+YG A LR+ L + + G L N C
Sbjct: 179 QINAVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCE 238
Query: 782 -----SRY-CFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARR 835
+R CF+AGD RASEQ L HT+L+REHNRLA +L ++NPHWN E+L+Q AR+
Sbjct: 239 FINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARK 298
Query: 836 IMVGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIG 895
I+ Q I + ++LP +LG K P Y+GYN++ P I F T A+R G
Sbjct: 299 ILGAFIQIITFRDYLPIVLGSEMQ-----KWIPP--YQGYNNSVDPRISNVF-TFAFRFG 350
Query: 896 HSLLRPFIPRL 906
H + + RL
Sbjct: 351 HMEVPSTVSRL 361
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 122/213 (57%), Gaps = 17/213 (7%)
Query: 1672 FFNPDLIYKPNMIDEMMRGLAG--TPMENLDQFVTGEITNHLFEEKGRPHSGVDLPALNI 1729
FFN I K ID ++RGL + + N D+ VT E+ N LF+ + H G DL A+N+
Sbjct: 380 FFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIH-GFDLAAINL 438
Query: 1730 QRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIAR-FRRIYASPDDVDLFPGGLS 1788
QR RDHG+P YN +R C L + KT L + ++++A+ +Y +PD++D++ GG +
Sbjct: 439 QRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNA 498
Query: 1789 ERPVAGGMVGPTFACIIGLQFRQLRKCDRFWYETDDPVIRFTEPQLQEIRKATLAKEIKK 1848
E V G VGP AC++G QF+Q+R DRFW+E +P + FTE Q ++K
Sbjct: 499 EPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE--NPGV-FTEKQ---------RDSLQK 546
Query: 1849 ATLAKVICANMDYPGEITNHLFEEKGRPHSGVD 1881
+ +++IC N + ++ H F+ PH VD
Sbjct: 547 VSFSRLICDNT-HITKVPLHAFQANNYPHDFVD 578
Score = 90.5 bits (223), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 73/121 (60%), Gaps = 4/121 (3%)
Query: 1325 FFNPDLIYKPNMIDEMMRGLAG--TPMENLDQFVTGEITNHLFEEKGRPHSGVDLPALNI 1382
FFN I K ID ++RGL + + N D+ VT E+ N LF+ + H G DL A+N+
Sbjct: 380 FFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIH-GFDLAAINL 438
Query: 1383 QRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIA-RFRRIYASPDDVDLFPGGLS 1441
QR RDHG+P YN +R C L + KT L + ++++A + +Y +PD++D++ GG +
Sbjct: 439 QRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNA 498
Query: 1442 E 1442
E
Sbjct: 499 E 499
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 74/160 (46%), Gaps = 14/160 (8%)
Query: 1482 PAEPCDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTP----RVHSVSGA 1537
P CD SP+RTI+G CNN + G + +R LP+ YED ++ P + + +G
Sbjct: 11 PLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGF 70
Query: 1538 PLPTARLVSAMVHADISH---LSNRYSLMVMQLAQTIDHDLTFTPVYRGFFTSIPDCRPC 1594
+P AR VS + + L SL+ MQ Q +DHDL F P ++ C
Sbjct: 71 RVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETE-LGSNEHSKTQC 129
Query: 1595 DSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRS 1634
+ C PI P DP +T G+ C+PF R+
Sbjct: 130 EEYCIQGDNCFPIMFPKNDPKL----KTQGK--CMPFFRA 163
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 64/110 (58%), Gaps = 8/110 (7%)
Query: 1839 KATLAKEIKKATLAKVICANMDYPGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSY 1898
+ LAK+ K K++ + E+ N LF+ + H G DL A+N+QR RDHG+P Y
Sbjct: 397 RGLLAKKSKLMNQDKMVTS------ELRNKLFQPTHKIH-GFDLAAINLQRCRDHGMPGY 449
Query: 1899 NEYRALCNLKKAKTWADLSREIPDEVIA-RFRRIYASPDDVDLFPGGLSE 1947
N +R C L + KT L + ++++A + +Y +PD++D++ GG +E
Sbjct: 450 NSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAE 499
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
EHNRL EL ++NP W+ + L++EAR I+ A IQ +T+ +YLP+++G
Sbjct: 272 EHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 160 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
EHNRL EL ++NP W+ + L++EAR I+ A IQ +T+ +YLP+++G
Sbjct: 272 EHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 1025 LKGYRTFEK-----KSCEKTHTNIDNVDLLIGGLLENSEPGSALGITFSCLLARQFSVLK 1079
LKG +T K K + DN+D+ IGG E +G +CLL RQF ++
Sbjct: 464 LKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIR 523
Query: 1080 DSDRFWYEN 1088
D DRFW+EN
Sbjct: 524 DGDRFWWEN 532
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 11/147 (7%)
Query: 107 TTAKKVVNQATGFLDGSKIYGSDSILSRT--QYGAYLQCVSCNSPS---NLMYKLFELEH 161
+ A++ +N T FLD S +YGS+ L+ + L ++ N + L Y F +
Sbjct: 174 SLAREQINAVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKK 233
Query: 162 ---NRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG-ECVNPDWSEGV 217
+ A V + D F + I++A + E+ + + +NP W+
Sbjct: 234 PSPCEFINTTARVPCFLAGD--FRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEK 291
Query: 218 LSEEARSIVIAQIQHVTYDEYLPVLIG 244
L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 292 LYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 38.9 bits (89), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 437 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGENV 475
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G +
Sbjct: 283 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSEM 321
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 247 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 282
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 285 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 320
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 323 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 358
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 361 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 396
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 399 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 434
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
>pdb|3ERH|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3FAQ|A Chain A, Crystal Struture Of Lactoperoxidase Complex With Cyanide
Length = 595
Score = 160 bits (406), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 128/371 (34%), Positives = 179/371 (48%), Gaps = 48/371 (12%)
Query: 564 PAEPCDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTP----RVHSVSGA 619
P CD SP+RTI+G CNN + G + +R LP+ YED ++ P + + +G
Sbjct: 11 PLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGF 70
Query: 620 PLPTARLVSAMVHADISH---LSNRYSLMVMQLAQTIDHDLTFTPVYRGFFTSIPDCRPC 676
+P AR VS + + L SL+ MQ Q +DHDL F P ++ C
Sbjct: 71 RVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETE-LGSNEHSKTQC 129
Query: 677 DSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRSLSGQQGFG---------PRE 727
+ C PI P DP +T G+ C+PF R+ GF RE
Sbjct: 130 EEYCIQGDNCFPIMFPKNDPKL----KTQGK--CMPFFRA-----GFVCPTPPYQSLARE 178
Query: 728 QINQNSAYLDGSLIYGEHACQAKDLRSYDGKLNVTLMP------GRKDLLPNTPTHPECR 781
QIN +++LD SL+YG A LR+ L + + G L N C
Sbjct: 179 QINAVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCE 238
Query: 782 -----SRY-CFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARR 835
+R CF+AGD RASEQ L HT+L+REHNRLA +L ++NPHWN E+L+Q AR+
Sbjct: 239 FINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARK 298
Query: 836 IMVGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIG 895
I+ Q I + ++LP +LG K P Y+GYN++ P I F T A+R G
Sbjct: 299 ILGAFIQIITFRDYLPIVLGSEMQ-----KWIPP--YQGYNNSVDPRISNVF-TFAFRFG 350
Query: 896 HSLLRPFIPRL 906
H + + RL
Sbjct: 351 HMEVPSTVSRL 361
Score = 138 bits (347), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 121/213 (56%), Gaps = 17/213 (7%)
Query: 1672 FFNPDLIYKPNMIDEMMRGLAG--TPMENLDQFVTGEITNHLFEEKGRPHSGVDLPALNI 1729
FFN I K ID + RGL + + N D+ VT E+ N LF+ + H G DL A+N+
Sbjct: 380 FFNTWRIIKDGGIDPLTRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIH-GFDLAAINL 438
Query: 1730 QRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIAR-FRRIYASPDDVDLFPGGLS 1788
QR RDHG+P YN +R C L + KT L + ++++A+ +Y +PD++D++ GG +
Sbjct: 439 QRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNA 498
Query: 1789 ERPVAGGMVGPTFACIIGLQFRQLRKCDRFWYETDDPVIRFTEPQLQEIRKATLAKEIKK 1848
E V G VGP AC++G QF+Q+R DRFW+E +P + FTE Q ++K
Sbjct: 499 EPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE--NPGV-FTEKQ---------RDSLQK 546
Query: 1849 ATLAKVICANMDYPGEITNHLFEEKGRPHSGVD 1881
+ +++IC N + ++ H F+ PH VD
Sbjct: 547 FSFSRLICDNT-HITKVPLHAFQANNYPHDFVD 578
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 72/121 (59%), Gaps = 4/121 (3%)
Query: 1325 FFNPDLIYKPNMIDEMMRGLAG--TPMENLDQFVTGEITNHLFEEKGRPHSGVDLPALNI 1382
FFN I K ID + RGL + + N D+ VT E+ N LF+ + H G DL A+N+
Sbjct: 380 FFNTWRIIKDGGIDPLTRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIH-GFDLAAINL 438
Query: 1383 QRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIA-RFRRIYASPDDVDLFPGGLS 1441
QR RDHG+P YN +R C L + KT L + ++++A + +Y +PD++D++ GG +
Sbjct: 439 QRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNA 498
Query: 1442 E 1442
E
Sbjct: 499 E 499
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 74/160 (46%), Gaps = 14/160 (8%)
Query: 1482 PAEPCDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTP----RVHSVSGA 1537
P CD SP+RTI+G CNN + G + +R LP+ YED ++ P + + +G
Sbjct: 11 PLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGF 70
Query: 1538 PLPTARLVSAMVHADISH---LSNRYSLMVMQLAQTIDHDLTFTPVYRGFFTSIPDCRPC 1594
+P AR VS + + L SL+ MQ Q +DHDL F P ++ C
Sbjct: 71 RVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETE-LGSNEHSKTQC 129
Query: 1595 DSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRS 1634
+ C PI P DP +T G+ C+PF R+
Sbjct: 130 EEYCIQGDNCFPIMFPKNDPKL----KTQGK--CMPFFRA 163
Score = 73.9 bits (180), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 65/112 (58%), Gaps = 8/112 (7%)
Query: 1837 IRKATLAKEIKKATLAKVICANMDYPGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVP 1896
+ + LAK+ K K++ + E+ N LF+ + H G DL A+N+QR RDHG+P
Sbjct: 395 LTRGLLAKKSKLMNQDKMVTS------ELRNKLFQPTHKIH-GFDLAAINLQRCRDHGMP 447
Query: 1897 SYNEYRALCNLKKAKTWADLSREIPDEVIA-RFRRIYASPDDVDLFPGGLSE 1947
YN +R C L + KT L + ++++A + +Y +PD++D++ GG +E
Sbjct: 448 GYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAE 499
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
EHNRL EL ++NP W+ + L++EAR I+ A IQ +T+ +YLP+++G
Sbjct: 272 EHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 160 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
EHNRL EL ++NP W+ + L++EAR I+ A IQ +T+ +YLP+++G
Sbjct: 272 EHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 1025 LKGYRTFEK-----KSCEKTHTNIDNVDLLIGGLLENSEPGSALGITFSCLLARQFSVLK 1079
LKG +T K K + DN+D+ IGG E +G +CLL RQF ++
Sbjct: 464 LKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIR 523
Query: 1080 DSDRFWYEN 1088
D DRFW+EN
Sbjct: 524 DGDRFWWEN 532
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 11/147 (7%)
Query: 107 TTAKKVVNQATGFLDGSKIYGSDSILSRT--QYGAYLQCVSCNSPS---NLMYKLFELEH 161
+ A++ +N T FLD S +YGS+ L+ + L ++ N + L Y F +
Sbjct: 174 SLAREQINAVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKK 233
Query: 162 ---NRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG-ECVNPDWSEGV 217
+ A V + D F + I++A + E+ + + +NP W+
Sbjct: 234 PSPCEFINTTARVPCFLAGD--FRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEK 291
Query: 218 LSEEARSIVIAQIQHVTYDEYLPVLIG 244
L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 292 LYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 437 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGENV 475
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G +
Sbjct: 283 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSEM 321
Score = 38.5 bits (88), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 247 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 282
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 38.5 bits (88), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 285 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 320
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 38.5 bits (88), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 323 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 358
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 38.5 bits (88), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 361 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 396
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
Score = 38.5 bits (88), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 399 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 434
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
>pdb|2GJ1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.3a
Resolution
Length = 583
Score = 160 bits (406), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 127/367 (34%), Positives = 178/367 (48%), Gaps = 48/367 (13%)
Query: 568 CDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTP----RVHSVSGAPLPT 623
CD SP+RTI+G CNN + G + +R LP+ YED ++ P + + +G +P
Sbjct: 3 CDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPL 62
Query: 624 ARLVSAMVHADISH---LSNRYSLMVMQLAQTIDHDLTFTPVYRGFFTSIPDCRPCDSRI 680
AR VS + + L SL+ MQ Q +DHDL F P ++ C+
Sbjct: 63 AREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETE-LGSNEHSKTQCEEYC 121
Query: 681 TVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRSLSGQQGFG---------PREQINQ 731
C PI P DP +T G+ C+PF R+ GF REQIN
Sbjct: 122 IQGDNCFPIMFPKNDPKL----KTQGK--CMPFFRA-----GFVCPTPPYQSLAREQINA 170
Query: 732 NSAYLDGSLIYGEHACQAKDLRSYDGKLNVTLMP------GRKDLLPNTPTHPECR---- 781
+++LD SL+YG A LR+ L + + G L N C
Sbjct: 171 VTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEFINT 230
Query: 782 -SRY-CFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVG 839
+R CF+AGD RASEQ L HT+L+REHNRLA +L ++NPHWN E+L+Q AR+I+
Sbjct: 231 TARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGA 290
Query: 840 QWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIGHSLL 899
Q I + ++LP +LG K P Y+GYN++ P I F T A+R GH +
Sbjct: 291 FIQIITFRDYLPIVLGSEMQ-----KWIPP--YQGYNNSVDPRISNVF-TFAFRFGHMEV 342
Query: 900 RPFIPRL 906
+ RL
Sbjct: 343 PSTVSRL 349
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 122/213 (57%), Gaps = 17/213 (7%)
Query: 1672 FFNPDLIYKPNMIDEMMRGLAG--TPMENLDQFVTGEITNHLFEEKGRPHSGVDLPALNI 1729
FFN I K ID ++RGL + + N D+ VT E+ N LF+ + H G DL A+N+
Sbjct: 368 FFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIH-GFDLAAINL 426
Query: 1730 QRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIAR-FRRIYASPDDVDLFPGGLS 1788
QR RDHG+P YN +R C L + KT L + ++++A+ +Y +PD++D++ GG +
Sbjct: 427 QRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNA 486
Query: 1789 ERPVAGGMVGPTFACIIGLQFRQLRKCDRFWYETDDPVIRFTEPQLQEIRKATLAKEIKK 1848
E V G VGP AC++G QF+Q+R DRFW+E +P + FTE Q ++K
Sbjct: 487 EPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE--NPGV-FTEKQ---------RDSLQK 534
Query: 1849 ATLAKVICANMDYPGEITNHLFEEKGRPHSGVD 1881
+ +++IC N + ++ H F+ PH VD
Sbjct: 535 VSFSRLICDNT-HITKVPLHAFQANNYPHDFVD 566
Score = 90.5 bits (223), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 73/121 (60%), Gaps = 4/121 (3%)
Query: 1325 FFNPDLIYKPNMIDEMMRGLAG--TPMENLDQFVTGEITNHLFEEKGRPHSGVDLPALNI 1382
FFN I K ID ++RGL + + N D+ VT E+ N LF+ + H G DL A+N+
Sbjct: 368 FFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIH-GFDLAAINL 426
Query: 1383 QRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIA-RFRRIYASPDDVDLFPGGLS 1441
QR RDHG+P YN +R C L + KT L + ++++A + +Y +PD++D++ GG +
Sbjct: 427 QRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNA 486
Query: 1442 E 1442
E
Sbjct: 487 E 487
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 73/156 (46%), Gaps = 14/156 (8%)
Query: 1486 CDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTP----RVHSVSGAPLPT 1541
CD SP+RTI+G CNN + G + +R LP+ YED ++ P + + +G +P
Sbjct: 3 CDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPL 62
Query: 1542 ARLVSAMVHADISH---LSNRYSLMVMQLAQTIDHDLTFTPVYRGFFTSIPDCRPCDSRI 1598
AR VS + + L SL+ MQ Q +DHDL F P ++ C+
Sbjct: 63 AREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETE-LGSNEHSKTQCEEYC 121
Query: 1599 TVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRS 1634
C PI P DP +T G+ C+PF R+
Sbjct: 122 IQGDNCFPIMFPKNDPKL----KTQGK--CMPFFRA 151
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 64/110 (58%), Gaps = 8/110 (7%)
Query: 1839 KATLAKEIKKATLAKVICANMDYPGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSY 1898
+ LAK+ K K++ + E+ N LF+ + H G DL A+N+QR RDHG+P Y
Sbjct: 385 RGLLAKKSKLMNQDKMVTS------ELRNKLFQPTHKIH-GFDLAAINLQRCRDHGMPGY 437
Query: 1899 NEYRALCNLKKAKTWADLSREIPDEVIA-RFRRIYASPDDVDLFPGGLSE 1947
N +R C L + KT L + ++++A + +Y +PD++D++ GG +E
Sbjct: 438 NSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAE 487
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
EHNRL EL ++NP W+ + L++EAR I+ A IQ +T+ +YLP+++G
Sbjct: 260 EHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 306
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 160 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
EHNRL EL ++NP W+ + L++EAR I+ A IQ +T+ +YLP+++G
Sbjct: 260 EHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 306
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 1025 LKGYRTFEK-----KSCEKTHTNIDNVDLLIGGLLENSEPGSALGITFSCLLARQFSVLK 1079
LKG +T K K + DN+D+ IGG E +G +CLL RQF ++
Sbjct: 452 LKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIR 511
Query: 1080 DSDRFWYEN 1088
D DRFW+EN
Sbjct: 512 DGDRFWWEN 520
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 11/147 (7%)
Query: 107 TTAKKVVNQATGFLDGSKIYGSD-SILSRTQ-YGAYLQCVSCNSPS---NLMYKLFELEH 161
+ A++ +N T FLD S +YGS+ S+ SR + + L ++ N + L Y F +
Sbjct: 162 SLAREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKK 221
Query: 162 ---NRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG-ECVNPDWSEGV 217
+ A V + D F + I++A + E+ + + +NP W+
Sbjct: 222 PSPCEFINTTARVPCFLAGD--FRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEK 279
Query: 218 LSEEARSIVIAQIQHVTYDEYLPVLIG 244
L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 280 LYQEARKILGAFIQIITFRDYLPIVLG 306
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 437 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGENV 475
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G +
Sbjct: 271 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSEM 309
Score = 38.5 bits (88), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 247 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 282
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 271 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 306
Score = 38.5 bits (88), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 285 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 320
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 271 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 306
Score = 38.5 bits (88), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 323 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 358
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 271 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 306
Score = 38.5 bits (88), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 361 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 396
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 271 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 306
Score = 38.5 bits (88), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 399 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 434
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 271 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 306
>pdb|2GJM|A Chain A, Crystal Structure Of Buffalo Lactoperoxidase At 2.75a
Resolution
Length = 583
Score = 160 bits (406), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 127/367 (34%), Positives = 178/367 (48%), Gaps = 48/367 (13%)
Query: 568 CDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTP----RVHSVSGAPLPT 623
CD SP+RTI+G CNN + G + +R LP+ YED ++ P + + +G +P
Sbjct: 3 CDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPL 62
Query: 624 ARLVSAMVHADISH---LSNRYSLMVMQLAQTIDHDLTFTPVYRGFFTSIPDCRPCDSRI 680
AR VS + + L SL+ MQ Q +DHDL F P ++ C+
Sbjct: 63 AREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETE-LGSNEHSKTQCEEYC 121
Query: 681 TVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRSLSGQQGFG---------PREQINQ 731
C PI P DP +T G+ C+PF R+ GF REQIN
Sbjct: 122 IQGDNCFPIMFPKNDPKL----KTQGK--CMPFFRA-----GFVCPTPPYQSLAREQINA 170
Query: 732 NSAYLDGSLIYGEHACQAKDLRSYDGKLNVTLMP------GRKDLLPNTPTHPECR---- 781
+++LD SL+YG A LR+ L + + G L N C
Sbjct: 171 VTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEFINT 230
Query: 782 -SRY-CFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVG 839
+R CF+AGD RASEQ L HT+L+REHNRLA +L ++NPHWN E+L+Q AR+I+
Sbjct: 231 TARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGA 290
Query: 840 QWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIGHSLL 899
Q I + ++LP +LG K P Y+GYN++ P I F T A+R GH +
Sbjct: 291 FIQIITFRDYLPIVLGSEMQ-----KWIPP--YQGYNNSVDPRISNVF-TFAFRFGHMEV 342
Query: 900 RPFIPRL 906
+ RL
Sbjct: 343 PSTVSRL 349
Score = 138 bits (347), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 121/213 (56%), Gaps = 17/213 (7%)
Query: 1672 FFNPDLIYKPNMIDEMMRGLAG--TPMENLDQFVTGEITNHLFEEKGRPHSGVDLPALNI 1729
FFN I K ID + RGL + + N D+ VT E+ N LF+ + H G DL A+N+
Sbjct: 368 FFNTWRIIKDGGIDPLTRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIH-GFDLAAINL 426
Query: 1730 QRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIAR-FRRIYASPDDVDLFPGGLS 1788
QR RDHG+P YN +R C L + KT L + ++++A+ +Y +PD++D++ GG +
Sbjct: 427 QRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNA 486
Query: 1789 ERPVAGGMVGPTFACIIGLQFRQLRKCDRFWYETDDPVIRFTEPQLQEIRKATLAKEIKK 1848
E V G VGP AC++G QF+Q+R DRFW+E +P + FTE Q ++K
Sbjct: 487 EPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE--NPGV-FTEKQ---------RDSLQK 534
Query: 1849 ATLAKVICANMDYPGEITNHLFEEKGRPHSGVD 1881
+ +++IC N + ++ H F+ PH VD
Sbjct: 535 FSFSRLICDNT-HITKVPLHAFQANNYPHDFVD 566
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 72/121 (59%), Gaps = 4/121 (3%)
Query: 1325 FFNPDLIYKPNMIDEMMRGLAG--TPMENLDQFVTGEITNHLFEEKGRPHSGVDLPALNI 1382
FFN I K ID + RGL + + N D+ VT E+ N LF+ + H G DL A+N+
Sbjct: 368 FFNTWRIIKDGGIDPLTRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIH-GFDLAAINL 426
Query: 1383 QRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIA-RFRRIYASPDDVDLFPGGLS 1441
QR RDHG+P YN +R C L + KT L + ++++A + +Y +PD++D++ GG +
Sbjct: 427 QRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNA 486
Query: 1442 E 1442
E
Sbjct: 487 E 487
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 73/156 (46%), Gaps = 14/156 (8%)
Query: 1486 CDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTP----RVHSVSGAPLPT 1541
CD SP+RTI+G CNN + G + +R LP+ YED ++ P + + +G +P
Sbjct: 3 CDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPL 62
Query: 1542 ARLVSAMVHADISH---LSNRYSLMVMQLAQTIDHDLTFTPVYRGFFTSIPDCRPCDSRI 1598
AR VS + + L SL+ MQ Q +DHDL F P ++ C+
Sbjct: 63 AREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETE-LGSNEHSKTQCEEYC 121
Query: 1599 TVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRS 1634
C PI P DP +T G+ C+PF R+
Sbjct: 122 IQGDNCFPIMFPKNDPKL----KTQGK--CMPFFRA 151
Score = 73.9 bits (180), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 65/112 (58%), Gaps = 8/112 (7%)
Query: 1837 IRKATLAKEIKKATLAKVICANMDYPGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVP 1896
+ + LAK+ K K++ + E+ N LF+ + H G DL A+N+QR RDHG+P
Sbjct: 383 LTRGLLAKKSKLMNQDKMVTS------ELRNKLFQPTHKIH-GFDLAAINLQRCRDHGMP 435
Query: 1897 SYNEYRALCNLKKAKTWADLSREIPDEVIA-RFRRIYASPDDVDLFPGGLSE 1947
YN +R C L + KT L + ++++A + +Y +PD++D++ GG +E
Sbjct: 436 GYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAE 487
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
EHNRL EL ++NP W+ + L++EAR I+ A IQ +T+ +YLP+++G
Sbjct: 260 EHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 306
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 160 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
EHNRL EL ++NP W+ + L++EAR I+ A IQ +T+ +YLP+++G
Sbjct: 260 EHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 306
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 1025 LKGYRTFEK-----KSCEKTHTNIDNVDLLIGGLLENSEPGSALGITFSCLLARQFSVLK 1079
LKG +T K K + DN+D+ IGG E +G +CLL RQF ++
Sbjct: 452 LKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIR 511
Query: 1080 DSDRFWYEN 1088
D DRFW+EN
Sbjct: 512 DGDRFWWEN 520
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 11/147 (7%)
Query: 107 TTAKKVVNQATGFLDGSKIYGSD-SILSRTQ-YGAYLQCVSCNSPS---NLMYKLFELEH 161
+ A++ +N T FLD S +YGS+ S+ SR + + L ++ N + L Y F +
Sbjct: 162 SLAREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKK 221
Query: 162 ---NRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG-ECVNPDWSEGV 217
+ A V + D F + I++A + E+ + + +NP W+
Sbjct: 222 PSPCEFINTTARVPCFLAGD--FRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEK 279
Query: 218 LSEEARSIVIAQIQHVTYDEYLPVLIG 244
L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 280 LYQEARKILGAFIQIITFRDYLPIVLG 306
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 437 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGENV 475
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G +
Sbjct: 271 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSEM 309
Score = 38.9 bits (89), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 247 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 282
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 271 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 306
Score = 38.9 bits (89), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 285 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 320
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 271 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 306
Score = 38.9 bits (89), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 323 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 358
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 271 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 306
Score = 38.9 bits (89), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 361 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 396
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 271 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 306
Score = 38.9 bits (89), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 399 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 434
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 271 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLG 306
>pdb|2O86|A Chain A, Crystal Structure Of A Ternary Complex Of Buffalo
Lactoperoxidase With Nitrate And Iodide At 2.8 A
Resolution
Length = 595
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 123/377 (32%), Positives = 177/377 (46%), Gaps = 60/377 (15%)
Query: 564 PAEPCDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTP----RVHSVSGA 619
P CD SP+RTI+G CNN + G + +R LP+ YED ++ P + + +G
Sbjct: 11 PLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGF 70
Query: 620 PLPTARLVSAMVHADISH---LSNRYSLMVMQLAQTIDHDLTFTPVYRGFFTSIPDCRPC 676
+P AR VS + + L SL+ MQ Q +DHDL F P ++ C
Sbjct: 71 RVPLAREVSNKIVGYLDEDGVLDQNRSLLFMQWGQIVDHDLDFAPETE-LGSNEHSKTQC 129
Query: 677 DSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRSLSGQQGFG---------PRE 727
+ C PI P DP +T G+ C+PF R+ GF RE
Sbjct: 130 EEYCIQGDNCFPIMFPKNDPKL----KTQGK--CMPFFRA-----GFVCPTPPYQSLARE 178
Query: 728 QINQNSAYLDGSLIYGEHACQAKDLRSYDGKLNVTLM------------------PGRKD 769
QIN +++LD SL+YG A L++ L + + P +
Sbjct: 179 QINAVTSFLDASLVYGSEPSLASRLQNLSSPLGLMAVNQEAWDHGLAYLPFNNRKPSPCE 238
Query: 770 LLPNTPTHPECRSRYCFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQL 829
+ T P CF+AGD RASEQ L HT+L+REHNRLA +L ++NP W+ E+L
Sbjct: 239 FINTTARVP------CFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPQWDGEKL 292
Query: 830 FQHARRIMVGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFAT 889
+Q AR+I+ Q I + ++LP +LG K P Y+GYN++ P I F T
Sbjct: 293 YQEARKILGAFVQIITFRDYLPIVLGSEMQ-----KWIPP--YQGYNNSVDPRISNVF-T 344
Query: 890 AAYRIGHSLLRPFIPRL 906
A+R GH + + RL
Sbjct: 345 FAFRFGHMEVPSTVSRL 361
Score = 140 bits (353), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 125/218 (57%), Gaps = 17/218 (7%)
Query: 1672 FFNPDLIYKPNMIDEMMRGLAG--TPMENLDQFVTGEITNHLFEEKGRPHSGVDLPALNI 1729
FFN I K ID ++RGL + + N D+ VT E+ N LF+ + H G DL A+N+
Sbjct: 380 FFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIH-GFDLAAINL 438
Query: 1730 QRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIAR-FRRIYASPDDVDLFPGGLS 1788
QR RDHG+P YN +R C L + KT L + ++++A+ +Y +PD++D++ GG +
Sbjct: 439 QRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNA 498
Query: 1789 ERPVAGGMVGPTFACIIGLQFRQLRKCDRFWYETDDPVIRFTEPQLQEIRKATLAKEIKK 1848
E V G VGP AC++G QF+Q+R DRFW+E +P + FTE Q ++K
Sbjct: 499 EPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE--NPGV-FTEKQ---------RDSLQK 546
Query: 1849 ATLAKVICANMDYPGEITNHLFEEKGRPHSGVDLPALN 1886
+ +++IC N + ++ H F+ PH VD A++
Sbjct: 547 MSFSRLICDNT-HITKVPLHAFQANNYPHDFVDCSAVD 583
Score = 90.5 bits (223), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 73/121 (60%), Gaps = 4/121 (3%)
Query: 1325 FFNPDLIYKPNMIDEMMRGLAG--TPMENLDQFVTGEITNHLFEEKGRPHSGVDLPALNI 1382
FFN I K ID ++RGL + + N D+ VT E+ N LF+ + H G DL A+N+
Sbjct: 380 FFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIH-GFDLAAINL 438
Query: 1383 QRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIA-RFRRIYASPDDVDLFPGGLS 1441
QR RDHG+P YN +R C L + KT L + ++++A + +Y +PD++D++ GG +
Sbjct: 439 QRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNA 498
Query: 1442 E 1442
E
Sbjct: 499 E 499
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 74/160 (46%), Gaps = 14/160 (8%)
Query: 1482 PAEPCDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTP----RVHSVSGA 1537
P CD SP+RTI+G CNN + G + +R LP+ YED ++ P + + +G
Sbjct: 11 PLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGF 70
Query: 1538 PLPTARLVSAMVHADISH---LSNRYSLMVMQLAQTIDHDLTFTPVYRGFFTSIPDCRPC 1594
+P AR VS + + L SL+ MQ Q +DHDL F P ++ C
Sbjct: 71 RVPLAREVSNKIVGYLDEDGVLDQNRSLLFMQWGQIVDHDLDFAPETE-LGSNEHSKTQC 129
Query: 1595 DSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRS 1634
+ C PI P DP +T G+ C+PF R+
Sbjct: 130 EEYCIQGDNCFPIMFPKNDPKL----KTQGK--CMPFFRA 163
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 64/110 (58%), Gaps = 8/110 (7%)
Query: 1839 KATLAKEIKKATLAKVICANMDYPGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSY 1898
+ LAK+ K K++ + E+ N LF+ + H G DL A+N+QR RDHG+P Y
Sbjct: 397 RGLLAKKSKLMNQDKMVTS------ELRNKLFQPTHKIH-GFDLAAINLQRCRDHGMPGY 449
Query: 1899 NEYRALCNLKKAKTWADLSREIPDEVIA-RFRRIYASPDDVDLFPGGLSE 1947
N +R C L + KT L + ++++A + +Y +PD++D++ GG +E
Sbjct: 450 NSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAE 499
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 35/47 (74%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
EHNRL EL ++NP W + L++EAR I+ A +Q +T+ +YLP+++G
Sbjct: 272 EHNRLARELKKLNPQWDGEKLYQEARKILGAFVQIITFRDYLPIVLG 318
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 35/47 (74%)
Query: 160 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
EHNRL EL ++NP W + L++EAR I+ A +Q +T+ +YLP+++G
Sbjct: 272 EHNRLARELKKLNPQWDGEKLYQEARKILGAFVQIITFRDYLPIVLG 318
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 1025 LKGYRTFEK-----KSCEKTHTNIDNVDLLIGGLLENSEPGSALGITFSCLLARQFSVLK 1079
LKG +T K K + DN+D+ IGG E +G +CLL RQF ++
Sbjct: 464 LKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIR 523
Query: 1080 DSDRFWYEN 1088
D DRFW+EN
Sbjct: 524 DGDRFWWEN 532
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 17/150 (11%)
Query: 107 TTAKKVVNQATGFLDGSKIYGSD-SILSRTQ-YGAYLQCVSCNSPS---NLMYKLFELEH 161
+ A++ +N T FLD S +YGS+ S+ SR Q + L ++ N + L Y F +
Sbjct: 174 SLAREQINAVTSFLDASLVYGSEPSLASRLQNLSSPLGLMAVNQEAWDHGLAYLPF---N 230
Query: 162 NR------LVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG-ECVNPDWS 214
NR + A V + D F + I++A + E+ + + +NP W
Sbjct: 231 NRKPSPCEFINTTARVPCFLAGD--FRASEQILLATAHTLLLREHNRLARELKKLNPQWD 288
Query: 215 EGVLSEEARSIVIAQIQHVTYDEYLPVLIG 244
L +EAR I+ A +Q +T+ +YLP+++G
Sbjct: 289 GEKLYQEARKILGAFVQIITFRDYLPIVLG 318
Score = 38.1 bits (87), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 437 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGENV 475
+NP W L +EAR I+ A +Q +T+ +YLP+++G +
Sbjct: 283 LNPQWDGEKLYQEARKILGAFVQIITFRDYLPIVLGSEM 321
Score = 38.1 bits (87), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 285 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 320
+NP W L +EAR I+ A +Q +T+ +YLP+++G
Sbjct: 283 LNPQWDGEKLYQEARKILGAFVQIITFRDYLPIVLG 318
Score = 38.1 bits (87), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 323 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 358
+NP W L +EAR I+ A +Q +T+ +YLP+++G
Sbjct: 283 LNPQWDGEKLYQEARKILGAFVQIITFRDYLPIVLG 318
Score = 38.1 bits (87), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 361 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 396
+NP W L +EAR I+ A +Q +T+ +YLP+++G
Sbjct: 283 LNPQWDGEKLYQEARKILGAFVQIITFRDYLPIVLG 318
Score = 38.1 bits (87), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 399 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 434
+NP W L +EAR I+ A +Q +T+ +YLP+++G
Sbjct: 283 LNPQWDGEKLYQEARKILGAFVQIITFRDYLPIVLG 318
>pdb|2Z5Z|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Fluoride Ion At 3.5a Resolution
pdb|3FNL|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Salicylhydroxamic Acid At 2.48 A
Resolution
Length = 595
Score = 154 bits (390), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 127/371 (34%), Positives = 180/371 (48%), Gaps = 48/371 (12%)
Query: 564 PAEPCDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTP----RVHSVSGA 619
P CD SP+RTI+G CNN + G + +R LP+ YED ++ P + + +G
Sbjct: 11 PLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGF 70
Query: 620 PLPTARLVSAMVHADISH---LSNRYSLMVMQLAQTIDHDLTFTPVYRGFFTSIPDCRPC 676
+P AR VS + + L SL+ MQ Q +DHDL F P ++ C
Sbjct: 71 RVPLAREVSNKIVGYLDEDGVLDQNRSLLFMQWGQIVDHDLDFAPETE-LGSNEHSKTQC 129
Query: 677 DSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRSLSGQQGFG---------PRE 727
+ C PI P DP +T G+ C+PF R+ GF RE
Sbjct: 130 EEYCIQGDNCFPIMFPKNDPKL----KTQGK--CMPFFRA-----GFVCPTPPYQSLARE 178
Query: 728 QINQNSAYLDGSLIYGEH---ACQAKDLRSYDGKLNVTLMPGRKDL--LPNTPTHPE--- 779
QIN +++LD SL+YG A + ++L S G + V L LP P
Sbjct: 179 QINAVTSFLDASLVYGSEPXLASRLQNLSSPLGLMAVNQEAWDHGLAYLPFNNRKPSPCE 238
Query: 780 ---CRSRY-CFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARR 835
+R CF+AGD RASEQ L HT+L+REHNRLA +L ++NP W+ E+L+Q AR+
Sbjct: 239 FINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPQWDGEKLYQEARK 298
Query: 836 IMVGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIG 895
I+ Q I + ++LP +LG K P Y+GYN++ P I F T A+R G
Sbjct: 299 ILGAFVQIITFRDYLPIVLGSEMQ-----KWIPP--YQGYNNSVDPRISNVF-TFAFRFG 350
Query: 896 HSLLRPFIPRL 906
H + + RL
Sbjct: 351 HMEVPSTVSRL 361
Score = 140 bits (353), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 125/218 (57%), Gaps = 17/218 (7%)
Query: 1672 FFNPDLIYKPNMIDEMMRGLAG--TPMENLDQFVTGEITNHLFEEKGRPHSGVDLPALNI 1729
FFN I K ID ++RGL + + N D+ VT E+ N LF+ + H G DL A+N+
Sbjct: 380 FFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIH-GFDLAAINL 438
Query: 1730 QRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIAR-FRRIYASPDDVDLFPGGLS 1788
QR RDHG+P YN +R C L + KT L + ++++A+ +Y +PD++D++ GG +
Sbjct: 439 QRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNA 498
Query: 1789 ERPVAGGMVGPTFACIIGLQFRQLRKCDRFWYETDDPVIRFTEPQLQEIRKATLAKEIKK 1848
E V G VGP AC++G QF+Q+R DRFW+E +P + FTE Q ++K
Sbjct: 499 EPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE--NPGV-FTEKQ---------RDSLQK 546
Query: 1849 ATLAKVICANMDYPGEITNHLFEEKGRPHSGVDLPALN 1886
+ +++IC N + ++ H F+ PH VD A++
Sbjct: 547 MSFSRLICDNT-HITKVPLHAFQANNYPHDFVDCSAVD 583
Score = 90.5 bits (223), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 73/121 (60%), Gaps = 4/121 (3%)
Query: 1325 FFNPDLIYKPNMIDEMMRGLAG--TPMENLDQFVTGEITNHLFEEKGRPHSGVDLPALNI 1382
FFN I K ID ++RGL + + N D+ VT E+ N LF+ + H G DL A+N+
Sbjct: 380 FFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIH-GFDLAAINL 438
Query: 1383 QRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIA-RFRRIYASPDDVDLFPGGLS 1441
QR RDHG+P YN +R C L + KT L + ++++A + +Y +PD++D++ GG +
Sbjct: 439 QRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNA 498
Query: 1442 E 1442
E
Sbjct: 499 E 499
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 74/160 (46%), Gaps = 14/160 (8%)
Query: 1482 PAEPCDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTP----RVHSVSGA 1537
P CD SP+RTI+G CNN + G + +R LP+ YED ++ P + + +G
Sbjct: 11 PLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGF 70
Query: 1538 PLPTARLVSAMVHADISH---LSNRYSLMVMQLAQTIDHDLTFTPVYRGFFTSIPDCRPC 1594
+P AR VS + + L SL+ MQ Q +DHDL F P ++ C
Sbjct: 71 RVPLAREVSNKIVGYLDEDGVLDQNRSLLFMQWGQIVDHDLDFAPETE-LGSNEHSKTQC 129
Query: 1595 DSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRS 1634
+ C PI P DP +T G+ C+PF R+
Sbjct: 130 EEYCIQGDNCFPIMFPKNDPKL----KTQGK--CMPFFRA 163
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 64/110 (58%), Gaps = 8/110 (7%)
Query: 1839 KATLAKEIKKATLAKVICANMDYPGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSY 1898
+ LAK+ K K++ + E+ N LF+ + H G DL A+N+QR RDHG+P Y
Sbjct: 397 RGLLAKKSKLMNQDKMVTS------ELRNKLFQPTHKIH-GFDLAAINLQRCRDHGMPGY 449
Query: 1899 NEYRALCNLKKAKTWADLSREIPDEVIA-RFRRIYASPDDVDLFPGGLSE 1947
N +R C L + KT L + ++++A + +Y +PD++D++ GG +E
Sbjct: 450 NSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAE 499
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 35/47 (74%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
EHNRL EL ++NP W + L++EAR I+ A +Q +T+ +YLP+++G
Sbjct: 272 EHNRLARELKKLNPQWDGEKLYQEARKILGAFVQIITFRDYLPIVLG 318
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 35/47 (74%)
Query: 160 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
EHNRL EL ++NP W + L++EAR I+ A +Q +T+ +YLP+++G
Sbjct: 272 EHNRLARELKKLNPQWDGEKLYQEARKILGAFVQIITFRDYLPIVLG 318
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 1025 LKGYRTFEK-----KSCEKTHTNIDNVDLLIGGLLENSEPGSALGITFSCLLARQFSVLK 1079
LKG +T K K + DN+D+ IGG E +G +CLL RQF ++
Sbjct: 464 LKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIR 523
Query: 1080 DSDRFWYEN 1088
D DRFW+EN
Sbjct: 524 DGDRFWWEN 532
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 17/150 (11%)
Query: 107 TTAKKVVNQATGFLDGSKIYGSDSIL-SRTQ-YGAYLQCVSCNSPS---NLMYKLFELEH 161
+ A++ +N T FLD S +YGS+ L SR Q + L ++ N + L Y F +
Sbjct: 174 SLAREQINAVTSFLDASLVYGSEPXLASRLQNLSSPLGLMAVNQEAWDHGLAYLPF---N 230
Query: 162 NR------LVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG-ECVNPDWS 214
NR + A V + D F + I++A + E+ + + +NP W
Sbjct: 231 NRKPSPCEFINTTARVPCFLAGD--FRASEQILLATAHTLLLREHNRLARELKKLNPQWD 288
Query: 215 EGVLSEEARSIVIAQIQHVTYDEYLPVLIG 244
L +EAR I+ A +Q +T+ +YLP+++G
Sbjct: 289 GEKLYQEARKILGAFVQIITFRDYLPIVLG 318
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 437 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGENV 475
+NP W L +EAR I+ A +Q +T+ +YLP+++G +
Sbjct: 283 LNPQWDGEKLYQEARKILGAFVQIITFRDYLPIVLGSEM 321
Score = 38.1 bits (87), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 247 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 282
+NP W L +EAR I+ A +Q +T+ +YLP+++G
Sbjct: 283 LNPQWDGEKLYQEARKILGAFVQIITFRDYLPIVLG 318
Score = 38.1 bits (87), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 285 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 320
+NP W L +EAR I+ A +Q +T+ +YLP+++G
Sbjct: 283 LNPQWDGEKLYQEARKILGAFVQIITFRDYLPIVLG 318
Score = 38.1 bits (87), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 323 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 358
+NP W L +EAR I+ A +Q +T+ +YLP+++G
Sbjct: 283 LNPQWDGEKLYQEARKILGAFVQIITFRDYLPIVLG 318
Score = 38.1 bits (87), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 361 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 396
+NP W L +EAR I+ A +Q +T+ +YLP+++G
Sbjct: 283 LNPQWDGEKLYQEARKILGAFVQIITFRDYLPIVLG 318
Score = 38.1 bits (87), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 399 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIG 434
+NP W L +EAR I+ A +Q +T+ +YLP+++G
Sbjct: 283 LNPQWDGEKLYQEARKILGAFVQIITFRDYLPIVLG 318
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
pdb|3TZI|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
Length = 593
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 124/294 (42%), Gaps = 26/294 (8%)
Query: 736 LDGSLIYGEHACQAKDLRSY-DGKLNVTLMPGR------KDLLPNTPTHPECRSRYCFVA 788
+D + IYGE + LR + DGKL ++ G KD P F
Sbjct: 203 VDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAV 262
Query: 789 GDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNE 848
G PGL TI +REHNR+ + L Q +P W DEQLFQ +R I++G+ IV +
Sbjct: 263 GQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIED 322
Query: 849 FLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIGHSLLRPFIPRLVI 908
++ L G + + LK P + + I +EF T + H LL P +
Sbjct: 323 YVQHLSGYH----FKLKFDPELLFNQ-QFQYQNRIASEFNTLYH--WHPLL-PDTFNIED 374
Query: 909 ARFRRIYASPDDVDLFPGGLSE------RPVAARLRRIYASPDDVDLFPGGLSEQPVAV- 961
+ ++ L GL++ R +A R+ P V +Q +
Sbjct: 375 QEYSFKQFLYNNSILLEHGLTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMK 434
Query: 962 ---IVRFRRIYASPDDVDLFPGGLSERPVAARLRRIYASPDDVDLFPGGLSERP 1012
+ +R+ + S F E+ +AA L+ +Y+ D ++L+P L E+P
Sbjct: 435 YQSLNEYRKRF-SLKPYTSFEELTGEKEMAAELKALYSDIDVMELYPALLVEKP 487
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 1699 LDQFV---TGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTW 1755
L QFV T +I + + P + + +I ++R+ S NEYR +LK ++
Sbjct: 394 LTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSF 453
Query: 1756 ADLSREIPDEVIARFRRIYASPDDVDLFPGGLSERPVAGGMVGPT 1800
+L+ E E+ A + +Y+ D ++L+P L E+P + G T
Sbjct: 454 EELTGE--KEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGET 496
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 1352 LDQFV---TGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTW 1408
L QFV T +I + + P + + +I ++R+ S NEYR +LK ++
Sbjct: 394 LTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSF 453
Query: 1409 ADLSREIPDEVIARFRRIYASPDDVDLFPGGLSERPVA-ALLDNSLDPIGLDF 1460
+L+ E E+ A + +Y+ D ++L+P L E+P A+ ++ +G F
Sbjct: 454 EELTGE--KEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPF 504
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 149 PSNLMYKLFEL-EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
P +MY L EHNR+ L + +P+W ++ LF+ +R I+I + + ++Y+ L G
Sbjct: 271 PGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSG 329
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 1874 GRPHSGVDLP-------ALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIA 1926
GR G ++P +I ++R+ S NEYR +LK ++ +L+ E E+ A
Sbjct: 407 GRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTGE--KEMAA 464
Query: 1927 RFRRIYASPDDVDLFPGGLSERPVAD 1952
+ +Y+ D ++L+P L E+P D
Sbjct: 465 ELKALYSDIDVMELYPALLVEKPRPD 490
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 29/47 (61%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
EHNR+ L + +P+W ++ LF+ +R I+I + + ++Y+ L G
Sbjct: 283 EHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSG 329
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLT|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound To
The Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound To
The Cyclooxygenase Channel Of R513h Murine Cox-2
Length = 592
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 124/294 (42%), Gaps = 26/294 (8%)
Query: 736 LDGSLIYGEHACQAKDLRSY-DGKLNVTLMPGR------KDLLPNTPTHPECRSRYCFVA 788
+D + IYGE + LR + DGKL ++ G KD P F
Sbjct: 202 VDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAV 261
Query: 789 GDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNE 848
G PGL TI +REHNR+ + L Q +P W DEQLFQ +R I++G+ IV +
Sbjct: 262 GQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIED 321
Query: 849 FLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIGHSLLRPFIPRLVI 908
++ L G + + LK P + + I +EF T + H LL P +
Sbjct: 322 YVQHLSGYH----FKLKFDPELLFNQ-QFQYQNRIASEFNTLYH--WHPLL-PDTFNIED 373
Query: 909 ARFRRIYASPDDVDLFPGGLSE------RPVAARLRRIYASPDDVDLFPGGLSEQPVAV- 961
+ ++ L GL++ R +A R+ P V +Q +
Sbjct: 374 QEYSFKQFLYNNSILLEHGLTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMK 433
Query: 962 ---IVRFRRIYASPDDVDLFPGGLSERPVAARLRRIYASPDDVDLFPGGLSERP 1012
+ +R+ + S F E+ +AA L+ +Y+ D ++L+P L E+P
Sbjct: 434 YQSLNEYRKRF-SLKPYTSFEELTGEKEMAAELKALYSDIDVMELYPALLVEKP 486
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 1699 LDQFV---TGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTW 1755
L QFV T +I + + P + + +I ++R+ S NEYR +LK ++
Sbjct: 393 LTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSF 452
Query: 1756 ADLSREIPDEVIARFRRIYASPDDVDLFPGGLSERPVAGGMVGPT 1800
+L+ E E+ A + +Y+ D ++L+P L E+P + G T
Sbjct: 453 EELTGE--KEMAAELKALYSDIDVMELYPALLVEKPHPDAIFGET 495
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 149 PSNLMYKLFEL-EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
P +MY L EHNR+ L + +P+W ++ LF+ +R I+I + + ++Y+ L G
Sbjct: 270 PGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSG 328
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 1352 LDQFV---TGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTW 1408
L QFV T +I + + P + + +I ++R+ S NEYR +LK ++
Sbjct: 393 LTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSF 452
Query: 1409 ADLSREIPDEVIARFRRIYASPDDVDLFPGGLSERPVA-ALLDNSLDPIGLDF 1460
+L+ E E+ A + +Y+ D ++L+P L E+P A+ ++ +G F
Sbjct: 453 EELTGE--KEMAAELKALYSDIDVMELYPALLVEKPHPDAIFGETMVELGAPF 503
Score = 38.5 bits (88), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 1874 GRPHSGVDLP-------ALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIA 1926
GR G ++P +I ++R+ S NEYR +LK ++ +L+ E E+ A
Sbjct: 406 GRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTGE--KEMAA 463
Query: 1927 RFRRIYASPDDVDLFPGGLSERPVAD 1952
+ +Y+ D ++L+P L E+P D
Sbjct: 464 ELKALYSDIDVMELYPALLVEKPHPD 489
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 29/47 (61%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
EHNR+ L + +P+W ++ LF+ +R I+I + + ++Y+ L G
Sbjct: 282 EHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSG 328
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
Length = 552
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 124/294 (42%), Gaps = 26/294 (8%)
Query: 736 LDGSLIYGEHACQAKDLRSY-DGKLNVTLMPGR------KDLLPNTPTHPECRSRYCFVA 788
+D + IYGE + LR + DGKL ++ G KD P F
Sbjct: 197 VDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAV 256
Query: 789 GDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNE 848
G PGL TI +REHNR+ + L Q +P W DEQLFQ +R I++G+ IV +
Sbjct: 257 GQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIED 316
Query: 849 FLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIGHSLLRPFIPRLVI 908
++ L G + + LK P + + I +EF T + H LL P +
Sbjct: 317 YVQHLSGYH----FKLKFDPELLFNQ-QFQYQNRIASEFNTLYH--WHPLL-PDTFNIED 368
Query: 909 ARFRRIYASPDDVDLFPGGLSE------RPVAARLRRIYASPDDVDLFPGGLSEQPVAV- 961
+ ++ L GL++ R +A R+ P V +Q +
Sbjct: 369 QEYSFKQFLYNNSILLEHGLTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMK 428
Query: 962 ---IVRFRRIYASPDDVDLFPGGLSERPVAARLRRIYASPDDVDLFPGGLSERP 1012
+ +R+ + S F E+ +AA L+ +Y+ D ++L+P L E+P
Sbjct: 429 YQSLNEYRKRF-SLKPYTSFEELTGEKEMAAELKALYSDIDVMELYPALLVEKP 481
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 1699 LDQFV---TGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTW 1755
L QFV T +I + + P + + +I ++R+ S NEYR +LK ++
Sbjct: 388 LTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSF 447
Query: 1756 ADLSREIPDEVIARFRRIYASPDDVDLFPGGLSERPVAGGMVGPT 1800
+L+ E E+ A + +Y+ D ++L+P L E+P + G T
Sbjct: 448 EELTGE--KEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGET 490
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 1352 LDQFV---TGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTW 1408
L QFV T +I + + P + + +I ++R+ S NEYR +LK ++
Sbjct: 388 LTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSF 447
Query: 1409 ADLSREIPDEVIARFRRIYASPDDVDLFPGGLSERPVA-ALLDNSLDPIGLDF 1460
+L+ E E+ A + +Y+ D ++L+P L E+P A+ ++ +G F
Sbjct: 448 EELTGE--KEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPF 498
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 149 PSNLMYKLFEL-EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
P +MY L EHNR+ L + +P+W ++ LF+ +R I+I + + ++Y+ L G
Sbjct: 265 PGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSG 323
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 1874 GRPHSGVDLP-------ALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIA 1926
GR G ++P +I ++R+ S NEYR +LK ++ +L+ E E+ A
Sbjct: 401 GRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTGE--KEMAA 458
Query: 1927 RFRRIYASPDDVDLFPGGLSERPVAD 1952
+ +Y+ D ++L+P L E+P D
Sbjct: 459 ELKALYSDIDVMELYPALLVEKPRPD 484
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 29/47 (61%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
EHNR+ L + +P+W ++ LF+ +R I+I + + ++Y+ L G
Sbjct: 277 EHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSG 323
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of Cox-2
pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of Cox-2
pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of Cox-2
pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of Cox-2
pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
Length = 587
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 124/294 (42%), Gaps = 26/294 (8%)
Query: 736 LDGSLIYGEHACQAKDLRSY-DGKLNVTLMPGR------KDLLPNTPTHPECRSRYCFVA 788
+D + IYGE + LR + DGKL ++ G KD P F
Sbjct: 197 VDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAV 256
Query: 789 GDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNE 848
G PGL TI +REHNR+ + L Q +P W DEQLFQ +R I++G+ IV +
Sbjct: 257 GQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIED 316
Query: 849 FLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIGHSLLRPFIPRLVI 908
++ L G + + LK P + + I +EF T + H LL P +
Sbjct: 317 YVQHLSGYH----FKLKFDPELLFNQ-QFQYQNRIASEFNTLYH--WHPLL-PDTFNIED 368
Query: 909 ARFRRIYASPDDVDLFPGGLSE------RPVAARLRRIYASPDDVDLFPGGLSEQPVAV- 961
+ ++ L GL++ R +A R+ P V +Q +
Sbjct: 369 QEYSFKQFLYNNSILLEHGLTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMK 428
Query: 962 ---IVRFRRIYASPDDVDLFPGGLSERPVAARLRRIYASPDDVDLFPGGLSERP 1012
+ +R+ + S F E+ +AA L+ +Y+ D ++L+P L E+P
Sbjct: 429 YQSLNEYRKRF-SLKPYTSFEELTGEKEMAAELKALYSDIDVMELYPALLVEKP 481
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 1699 LDQFV---TGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTW 1755
L QFV T +I + + P + + +I ++R+ S NEYR +LK ++
Sbjct: 388 LTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSF 447
Query: 1756 ADLSREIPDEVIARFRRIYASPDDVDLFPGGLSERPVAGGMVGPT 1800
+L+ E E+ A + +Y+ D ++L+P L E+P + G T
Sbjct: 448 EELTGE--KEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGET 490
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 1352 LDQFV---TGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTW 1408
L QFV T +I + + P + + +I ++R+ S NEYR +LK ++
Sbjct: 388 LTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSF 447
Query: 1409 ADLSREIPDEVIARFRRIYASPDDVDLFPGGLSERPVA-ALLDNSLDPIGLDF 1460
+L+ E E+ A + +Y+ D ++L+P L E+P A+ ++ +G F
Sbjct: 448 EELTGE--KEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPF 498
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 149 PSNLMYKLFEL-EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
P +MY L EHNR+ L + +P+W ++ LF+ +R I+I + + ++Y+ L G
Sbjct: 265 PGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSG 323
Score = 38.5 bits (88), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 1874 GRPHSGVDLP-------ALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIA 1926
GR G ++P +I ++R+ S NEYR +LK ++ +L+ E E+ A
Sbjct: 401 GRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTGE--KEMAA 458
Query: 1927 RFRRIYASPDDVDLFPGGLSERPVAD 1952
+ +Y+ D ++L+P L E+P D
Sbjct: 459 ELKALYSDIDVMELYPALLVEKPRPD 484
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 29/47 (61%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
EHNR+ L + +P+W ++ LF+ +R I+I + + ++Y+ L G
Sbjct: 277 EHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSG 323
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
pdb|3KRK|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
Length = 591
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 124/294 (42%), Gaps = 26/294 (8%)
Query: 736 LDGSLIYGEHACQAKDLRSY-DGKLNVTLMPGR------KDLLPNTPTHPECRSRYCFVA 788
+D + IYGE + LR + DGKL ++ G KD P F
Sbjct: 201 VDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAV 260
Query: 789 GDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNE 848
G PGL TI +REHNR+ + L Q +P W DEQLFQ +R I++G+ IV +
Sbjct: 261 GQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIED 320
Query: 849 FLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIGHSLLRPFIPRLVI 908
++ L G + + LK P + + I +EF T + H LL P +
Sbjct: 321 YVQHLSGYH----FKLKFDPELLFNQ-QFQYQNRIASEFNTLYH--WHPLL-PDTFNIED 372
Query: 909 ARFRRIYASPDDVDLFPGGLSE------RPVAARLRRIYASPDDVDLFPGGLSEQPVAV- 961
+ ++ L GL++ R +A R+ P V +Q +
Sbjct: 373 QEYSFKQFLYNNSILLEHGLTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMK 432
Query: 962 ---IVRFRRIYASPDDVDLFPGGLSERPVAARLRRIYASPDDVDLFPGGLSERP 1012
+ +R+ + S F E+ +AA L+ +Y+ D ++L+P L E+P
Sbjct: 433 YQSLNEYRKRF-SLKPYTSFEELTGEKEMAAELKALYSDIDVMELYPALLVEKP 485
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 1699 LDQFV---TGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTW 1755
L QFV T +I + + P + + +I ++R+ S NEYR +LK ++
Sbjct: 392 LTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSF 451
Query: 1756 ADLSREIPDEVIARFRRIYASPDDVDLFPGGLSERPVAGGMVGPT 1800
+L+ E E+ A + +Y+ D ++L+P L E+P + G T
Sbjct: 452 EELTGE--KEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGET 494
Score = 38.9 bits (89), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 1352 LDQFV---TGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTW 1408
L QFV T +I + + P + + +I ++R+ S NEYR +LK ++
Sbjct: 392 LTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSF 451
Query: 1409 ADLSREIPDEVIARFRRIYASPDDVDLFPGGLSERPVA-ALLDNSLDPIGLDF 1460
+L+ E E+ A + +Y+ D ++L+P L E+P A+ ++ +G F
Sbjct: 452 EELTGE--KEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPF 502
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 149 PSNLMYKLFEL-EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
P +MY L EHNR+ L + +P+W ++ LF+ +R I+I + + ++Y+ L G
Sbjct: 269 PGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSG 327
Score = 38.5 bits (88), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 1874 GRPHSGVDLP-------ALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIA 1926
GR G ++P +I ++R+ S NEYR +LK ++ +L+ E E+ A
Sbjct: 405 GRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTGE--KEMAA 462
Query: 1927 RFRRIYASPDDVDLFPGGLSERPVAD 1952
+ +Y+ D ++L+P L E+P D
Sbjct: 463 ELKALYSDIDVMELYPALLVEKPRPD 488
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 29/47 (61%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
EHNR+ L + +P+W ++ LF+ +R I+I + + ++Y+ L G
Sbjct: 281 EHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSG 327
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3MDL|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 587
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 124/294 (42%), Gaps = 26/294 (8%)
Query: 736 LDGSLIYGEHACQAKDLRSY-DGKLNVTLMPGR------KDLLPNTPTHPECRSRYCFVA 788
+D + IYGE + LR + DGKL ++ G KD P F
Sbjct: 202 VDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAV 261
Query: 789 GDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNE 848
G PGL TI +REHNR+ + L Q +P W DEQLFQ +R I++G+ IV +
Sbjct: 262 GQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIED 321
Query: 849 FLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIGHSLLRPFIPRLVI 908
++ L G + + LK P + + I +EF T + H LL P +
Sbjct: 322 YVQHLSGYH----FKLKFDPELLFNQ-QFQYQNRIASEFNTLYH--WHPLL-PDTFNIED 373
Query: 909 ARFRRIYASPDDVDLFPGGLSE------RPVAARLRRIYASPDDVDLFPGGLSEQPVAV- 961
+ ++ L GL++ R +A R+ P V +Q +
Sbjct: 374 QEYSFKQFLYNNSILLEHGLTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMK 433
Query: 962 ---IVRFRRIYASPDDVDLFPGGLSERPVAARLRRIYASPDDVDLFPGGLSERP 1012
+ +R+ + S F E+ +AA L+ +Y+ D ++L+P L E+P
Sbjct: 434 YQSLNEYRKRF-SLKPYTSFEELTGEKEMAAELKALYSDIDVMELYPALLVEKP 486
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 1699 LDQFV---TGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTW 1755
L QFV T +I + + P + + +I ++R+ S NEYR +LK ++
Sbjct: 393 LTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSF 452
Query: 1756 ADLSREIPDEVIARFRRIYASPDDVDLFPGGLSERPVAGGMVGPT 1800
+L+ E E+ A + +Y+ D ++L+P L E+P + G T
Sbjct: 453 EELTGE--KEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGET 495
Score = 38.9 bits (89), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 149 PSNLMYKLFEL-EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
P +MY L EHNR+ L + +P+W ++ LF+ +R I+I + + ++Y+ L G
Sbjct: 270 PGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSG 328
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 1352 LDQFV---TGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTW 1408
L QFV T +I + + P + + +I ++R+ S NEYR +LK ++
Sbjct: 393 LTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSF 452
Query: 1409 ADLSREIPDEVIARFRRIYASPDDVDLFPGGLSERPVA-ALLDNSLDPIGLDF 1460
+L+ E E+ A + +Y+ D ++L+P L E+P A+ ++ +G F
Sbjct: 453 EELTGE--KEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPF 503
Score = 38.5 bits (88), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 1874 GRPHSGVDLP-------ALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIA 1926
GR G ++P +I ++R+ S NEYR +LK ++ +L+ E E+ A
Sbjct: 406 GRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTGE--KEMAA 463
Query: 1927 RFRRIYASPDDVDLFPGGLSERPVAD 1952
+ +Y+ D ++L+P L E+P D
Sbjct: 464 ELKALYSDIDVMELYPALLVEKPRPD 489
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 29/47 (61%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
EHNR+ L + +P+W ++ LF+ +R I+I + + ++Y+ L G
Sbjct: 282 EHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSG 328
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS5|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|A Chain A, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|B Chain B, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|A Chain A, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|B Chain B, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 591
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 124/294 (42%), Gaps = 26/294 (8%)
Query: 736 LDGSLIYGEHACQAKDLRSY-DGKLNVTLMPGR------KDLLPNTPTHPECRSRYCFVA 788
+D + IYGE + LR + DGKL ++ G KD P F
Sbjct: 201 VDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAV 260
Query: 789 GDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNE 848
G PGL TI +REHNR+ + L Q +P W DEQLFQ +R I++G+ IV +
Sbjct: 261 GQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIED 320
Query: 849 FLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIGHSLLRPFIPRLVI 908
++ L G + + LK P + + I +EF T + H LL P +
Sbjct: 321 YVQHLSGYH----FKLKFDPELLFNQ-QFQYQNRIASEFNTLYH--WHPLL-PDTFNIED 372
Query: 909 ARFRRIYASPDDVDLFPGGLSE------RPVAARLRRIYASPDDVDLFPGGLSEQPVAV- 961
+ ++ L GL++ R +A R+ P V +Q +
Sbjct: 373 QEYSFKQFLYNNSILLEHGLTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMK 432
Query: 962 ---IVRFRRIYASPDDVDLFPGGLSERPVAARLRRIYASPDDVDLFPGGLSERP 1012
+ +R+ + S F E+ +AA L+ +Y+ D ++L+P L E+P
Sbjct: 433 YQSLNEYRKRF-SLKPYTSFEELTGEKEMAAELKALYSDIDVMELYPALLVEKP 485
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 1699 LDQFV---TGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTW 1755
L QFV T +I + + P + + +I ++R+ S NEYR +LK ++
Sbjct: 392 LTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSF 451
Query: 1756 ADLSREIPDEVIARFRRIYASPDDVDLFPGGLSERPVAGGMVGPT 1800
+L+ E E+ A + +Y+ D ++L+P L E+P + G T
Sbjct: 452 EELTGE--KEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGET 494
Score = 38.9 bits (89), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 1352 LDQFV---TGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTW 1408
L QFV T +I + + P + + +I ++R+ S NEYR +LK ++
Sbjct: 392 LTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSF 451
Query: 1409 ADLSREIPDEVIARFRRIYASPDDVDLFPGGLSERPVA-ALLDNSLDPIGLDF 1460
+L+ E E+ A + +Y+ D ++L+P L E+P A+ ++ +G F
Sbjct: 452 EELTGE--KEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPF 502
Score = 38.9 bits (89), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 149 PSNLMYKLFEL-EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
P +MY L EHNR+ L + +P+W ++ LF+ +R I+I + + ++Y+ L G
Sbjct: 269 PGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSG 327
Score = 38.5 bits (88), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 1874 GRPHSGVDLP-------ALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIA 1926
GR G ++P +I ++R+ S NEYR +LK ++ +L+ E E+ A
Sbjct: 405 GRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTGE--KEMAA 462
Query: 1927 RFRRIYASPDDVDLFPGGLSERPVAD 1952
+ +Y+ D ++L+P L E+P D
Sbjct: 463 ELKALYSDIDVMELYPALLVEKPRPD 488
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 29/47 (61%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
EHNR+ L + +P+W ++ LF+ +R I+I + + ++Y+ L G
Sbjct: 281 EHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSG 327
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QH0|B Chain B, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|A Chain A, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|B Chain B, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|A Chain A, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|B Chain B, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 610
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 124/294 (42%), Gaps = 26/294 (8%)
Query: 736 LDGSLIYGEHACQAKDLRSY-DGKLNVTLMPGR------KDLLPNTPTHPECRSRYCFVA 788
+D + IYGE + LR + DGKL ++ G KD P F
Sbjct: 220 VDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAV 279
Query: 789 GDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNE 848
G PGL TI +REHNR+ + L Q +P W DEQLFQ +R I++G+ IV +
Sbjct: 280 GQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIED 339
Query: 849 FLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIGHSLLRPFIPRLVI 908
++ L G + + LK P + + I +EF T + H LL P +
Sbjct: 340 YVQHLSGYH----FKLKFDPELLFNQ-QFQYQNRIASEFNTLYH--WHPLL-PDTFNIED 391
Query: 909 ARFRRIYASPDDVDLFPGGLSE------RPVAARLRRIYASPDDVDLFPGGLSEQPVAV- 961
+ ++ L GL++ R +A R+ P V +Q +
Sbjct: 392 QEYSFKQFLYNNSILLEHGLTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMK 451
Query: 962 ---IVRFRRIYASPDDVDLFPGGLSERPVAARLRRIYASPDDVDLFPGGLSERP 1012
+ +R+ + S F E+ +AA L+ +Y+ D ++L+P L E+P
Sbjct: 452 YQSLNEYRKRF-SLKPYTSFEELTGEKEMAAELKALYSDIDVMELYPALLVEKP 504
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 1699 LDQFV---TGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTW 1755
L QFV T +I + + P + + +I ++R+ S NEYR +LK ++
Sbjct: 411 LTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSF 470
Query: 1756 ADLSREIPDEVIARFRRIYASPDDVDLFPGGLSERPVAGGMVGPT 1800
+L+ E E+ A + +Y+ D ++L+P L E+P + G T
Sbjct: 471 EELTGE--KEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGET 513
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 1352 LDQFV---TGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTW 1408
L QFV T +I + + P + + +I ++R+ S NEYR +LK ++
Sbjct: 411 LTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSF 470
Query: 1409 ADLSREIPDEVIARFRRIYASPDDVDLFPGGLSERPVA-ALLDNSLDPIGLDF 1460
+L+ E E+ A + +Y+ D ++L+P L E+P A+ ++ +G F
Sbjct: 471 EELTGE--KEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPF 521
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 149 PSNLMYKLFEL-EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
P +MY L EHNR+ L + +P+W ++ LF+ +R I+I + + ++Y+ L G
Sbjct: 288 PGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSG 346
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 1874 GRPHSGVDLP-------ALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIA 1926
GR G ++P +I ++R+ S NEYR +LK ++ +L+ E E+ A
Sbjct: 424 GRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTGE--KEMAA 481
Query: 1927 RFRRIYASPDDVDLFPGGLSERPVAD 1952
+ +Y+ D ++L+P L E+P D
Sbjct: 482 ELKALYSDIDVMELYPALLVEKPRPD 507
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 29/47 (61%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
EHNR+ L + +P+W ++ LF+ +R I+I + + ++Y+ L G
Sbjct: 300 EHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSG 346
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The Cyclooxygenase
Active Site Of Cox-2
pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The Cyclooxygenase
Active Site Of Cox-2
pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The Cyclooxygenase
Active Site Of Cox-2
pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The Cyclooxygenase
Active Site Of Cox-2
pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
Length = 604
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 124/294 (42%), Gaps = 26/294 (8%)
Query: 736 LDGSLIYGEHACQAKDLRSY-DGKLNVTLMPGR------KDLLPNTPTHPECRSRYCFVA 788
+D + IYGE + LR + DGKL ++ G KD P F
Sbjct: 214 VDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAV 273
Query: 789 GDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNE 848
G PGL TI +REHNR+ + L Q +P W DEQLFQ +R I++G+ IV +
Sbjct: 274 GQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIED 333
Query: 849 FLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIGHSLLRPFIPRLVI 908
++ L G + + LK P + + I +EF T + H LL P +
Sbjct: 334 YVQHLSGYH----FKLKFDPELLFNQ-QFQYQNRIASEFNTLYH--WHPLL-PDTFNIED 385
Query: 909 ARFRRIYASPDDVDLFPGGLSE------RPVAARLRRIYASPDDVDLFPGGLSEQPVAV- 961
+ ++ L GL++ R +A R+ P V +Q +
Sbjct: 386 QEYSFKQFLYNNSILLEHGLTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMK 445
Query: 962 ---IVRFRRIYASPDDVDLFPGGLSERPVAARLRRIYASPDDVDLFPGGLSERP 1012
+ +R+ + S F E+ +AA L+ +Y+ D ++L+P L E+P
Sbjct: 446 YQSLNEYRKRF-SLKPYTSFEELTGEKEMAAELKALYSDIDVMELYPALLVEKP 498
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 1699 LDQFV---TGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTW 1755
L QFV T +I + + P + + +I ++R+ S NEYR +LK ++
Sbjct: 405 LTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSF 464
Query: 1756 ADLSREIPDEVIARFRRIYASPDDVDLFPGGLSERPVAGGMVGPT 1800
+L+ E E+ A + +Y+ D ++L+P L E+P + G T
Sbjct: 465 EELTGE--KEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGET 507
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 1352 LDQFV---TGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTW 1408
L QFV T +I + + P + + +I ++R+ S NEYR +LK ++
Sbjct: 405 LTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSF 464
Query: 1409 ADLSREIPDEVIARFRRIYASPDDVDLFPGGLSERPVA-ALLDNSLDPIGLDF 1460
+L+ E E+ A + +Y+ D ++L+P L E+P A+ ++ +G F
Sbjct: 465 EELTGE--KEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPF 515
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 149 PSNLMYKLFEL-EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
P +MY L EHNR+ L + +P+W ++ LF+ +R I+I + + ++Y+ L G
Sbjct: 282 PGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSG 340
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 1874 GRPHSGVDLP-------ALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIA 1926
GR G ++P +I ++R+ S NEYR +LK ++ +L+ E E+ A
Sbjct: 418 GRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTGE--KEMAA 475
Query: 1927 RFRRIYASPDDVDLFPGGLSERPVAD 1952
+ +Y+ D ++L+P L E+P D
Sbjct: 476 ELKALYSDIDVMELYPALLVEKPRPD 501
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 29/47 (61%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
EHNR+ L + +P+W ++ LF+ +R I+I + + ++Y+ L G
Sbjct: 294 EHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSG 340
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
Length = 560
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 124/294 (42%), Gaps = 26/294 (8%)
Query: 736 LDGSLIYGEHACQAKDLRSY-DGKLNVTLMPGR------KDLLPNTPTHPECRSRYCFVA 788
+D + IYGE + LR + DGKL ++ G KD P F
Sbjct: 197 VDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAV 256
Query: 789 GDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNE 848
G PGL TI +REHNR+ + L Q +P W DEQLFQ +R I++G+ IV +
Sbjct: 257 GQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIED 316
Query: 849 FLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIGHSLLRPFIPRLVI 908
++ L G + + LK P + + I +EF T + H LL P +
Sbjct: 317 YVQHLSGYH----FKLKFDPELLFNQ-QFQYQNRIASEFNTLYH--WHPLL-PDTFNIED 368
Query: 909 ARFRRIYASPDDVDLFPGGLSE------RPVAARLRRIYASPDDVDLFPGGLSEQPVAV- 961
+ ++ L GL++ R +A R+ P V +Q +
Sbjct: 369 QEYSFKQFLYNNSILLEHGLTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMK 428
Query: 962 ---IVRFRRIYASPDDVDLFPGGLSERPVAARLRRIYASPDDVDLFPGGLSERP 1012
+ +R+ + S F E+ +AA L+ +Y+ D ++L+P L E+P
Sbjct: 429 YQSLNEYRKRF-SLKPYTSFEELTGEKEMAAELKALYSDIDVMELYPALLVEKP 481
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 1699 LDQFV---TGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTW 1755
L QFV T +I + + P + + +I ++R+ S NEYR +LK ++
Sbjct: 388 LTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSF 447
Query: 1756 ADLSREIPDEVIARFRRIYASPDDVDLFPGGLSERPVAGGMVGPT 1800
+L+ E E+ A + +Y+ D ++L+P L E+P + G T
Sbjct: 448 EELTGE--KEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGET 490
Score = 38.9 bits (89), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 1352 LDQFV---TGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTW 1408
L QFV T +I + + P + + +I ++R+ S NEYR +LK ++
Sbjct: 388 LTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSF 447
Query: 1409 ADLSREIPDEVIARFRRIYASPDDVDLFPGGLSERPVA-ALLDNSLDPIGLDF 1460
+L+ E E+ A + +Y+ D ++L+P L E+P A+ ++ +G F
Sbjct: 448 EELTGE--KEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPF 498
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 149 PSNLMYKLFEL-EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
P +MY L EHNR+ L + +P+W ++ LF+ +R I+I + + ++Y+ L G
Sbjct: 265 PGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSG 323
Score = 38.9 bits (89), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 1874 GRPHSGVDLP-------ALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIA 1926
GR G ++P +I ++R+ S NEYR +LK ++ +L+ E E+ A
Sbjct: 401 GRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTGE--KEMAA 458
Query: 1927 RFRRIYASPDDVDLFPGGLSERPVAD 1952
+ +Y+ D ++L+P L E+P D
Sbjct: 459 ELKALYSDIDVMELYPALLVEKPRPD 484
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 29/47 (61%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
EHNR+ L + +P+W ++ LF+ +R I+I + + ++Y+ L G
Sbjct: 277 EHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSG 323
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 123/294 (41%), Gaps = 26/294 (8%)
Query: 736 LDGSLIYGEHACQAKDLRSY-DGKLNVTLMPGR------KDLLPNTPTHPECRSRYCFVA 788
+D + IYGE + LR + DGKL ++ G KD P F
Sbjct: 197 VDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAV 256
Query: 789 GDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNE 848
G PGL TI +REH R+ + L Q +P W DEQLFQ ++ I++G+ IV +
Sbjct: 257 GQEVFGLVPGLMMYATIWLREHQRVCDILKQEHPEWGDEQLFQTSKLILIGETIKIVIED 316
Query: 849 FLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIGHSLLRPFIPRLVI 908
++ L G + + LK P + + I +EF T + H LL P +
Sbjct: 317 YVQHLSGYH----FKLKFDPELLFNQ-QFQYQNRIASEFNTLYH--WHPLL-PDTFNIED 368
Query: 909 ARFRRIYASPDDVDLFPGGLSE------RPVAARLRRIYASPDDVDLFPGGLSEQPVAV- 961
+ ++ L GL++ R +A R+ P V +Q +
Sbjct: 369 QEYSFKQFLYNNSILLEHGLTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMK 428
Query: 962 ---IVRFRRIYASPDDVDLFPGGLSERPVAARLRRIYASPDDVDLFPGGLSERP 1012
+ +R+ + S F E+ +AA L+ +Y+ D ++L+P L E+P
Sbjct: 429 YQSLNEYRKRF-SLKPYTSFEELTGEKEMAAELKALYSDIDVMELYPALLVEKP 481
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 1699 LDQFV---TGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTW 1755
L QFV T +I + + P + + +I ++R+ S NEYR +LK ++
Sbjct: 388 LTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSF 447
Query: 1756 ADLSREIPDEVIARFRRIYASPDDVDLFPGGLSERPVAGGMVGPT 1800
+L+ E E+ A + +Y+ D ++L+P L E+P + G T
Sbjct: 448 EELTGE--KEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGET 490
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 1352 LDQFV---TGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTW 1408
L QFV T +I + + P + + +I ++R+ S NEYR +LK ++
Sbjct: 388 LTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSF 447
Query: 1409 ADLSREIPDEVIARFRRIYASPDDVDLFPGGLSERPVA-ALLDNSLDPIGLDF 1460
+L+ E E+ A + +Y+ D ++L+P L E+P A+ ++ +G F
Sbjct: 448 EELTGE--KEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPF 498
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 1874 GRPHSGVDLP-------ALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIA 1926
GR G ++P +I ++R+ S NEYR +LK ++ +L+ E E+ A
Sbjct: 401 GRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTGE--KEMAA 458
Query: 1927 RFRRIYASPDDVDLFPGGLSERPVAD 1952
+ +Y+ D ++L+P L E+P D
Sbjct: 459 ELKALYSDIDVMELYPALLVEKPRPD 484
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 149 PSNLMYKLFEL-EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
P +MY L EH R+ L + +P+W ++ LF+ ++ I+I + + ++Y+ L G
Sbjct: 265 PGLMMYATIWLREHQRVCDILKQEHPEWGDEQLFQTSKLILIGETIKIVIEDYVQHLSG 323
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
EH R+ L + +P+W ++ LF+ ++ I+I + + ++Y+ L G
Sbjct: 277 EHQRVCDILKQEHPEWGDEQLFQTSKLILIGETIKIVIEDYVQHLSG 323
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With A
Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With A
Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With A
Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With A
Non- Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With A
Non- Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With A
Non- Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With A
Non- Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With A
Non- Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With A
Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With A
Selective Inhibitor, Sc-558 In I222 Space Group
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With A
Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With A
Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With A
Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With A
Selective Inhibitor, Sc-558
Length = 587
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 123/294 (41%), Gaps = 26/294 (8%)
Query: 736 LDGSLIYGEHACQAKDLRSY-DGKLNVTLMPGR------KDLLPNTPTHPECRSRYCFVA 788
+D + IYGE + LR + DGKL ++ G KD P F
Sbjct: 197 VDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAV 256
Query: 789 GDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNE 848
G PGL TI +REH R+ + L Q +P W DEQLFQ ++ I++G+ IV +
Sbjct: 257 GQEVFGLVPGLMMYATIWLREHQRVCDILKQEHPEWGDEQLFQTSKLILIGETIKIVIED 316
Query: 849 FLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIGHSLLRPFIPRLVI 908
++ L G + + LK P + + I +EF T + H LL P +
Sbjct: 317 YVQHLSGYH----FKLKFDPELLFNQ-QFQYQNRIASEFNTLYH--WHPLL-PDTFNIED 368
Query: 909 ARFRRIYASPDDVDLFPGGLSE------RPVAARLRRIYASPDDVDLFPGGLSEQPVAV- 961
+ ++ L GL++ R +A R+ P V +Q +
Sbjct: 369 QEYSFKQFLYNNSILLEHGLTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMK 428
Query: 962 ---IVRFRRIYASPDDVDLFPGGLSERPVAARLRRIYASPDDVDLFPGGLSERP 1012
+ +R+ + S F E+ +AA L+ +Y+ D ++L+P L E+P
Sbjct: 429 YQSLNEYRKRF-SLKPYTSFEELTGEKEMAAELKALYSDIDVMELYPALLVEKP 481
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 1699 LDQFV---TGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTW 1755
L QFV T +I + + P + + +I ++R+ S NEYR +LK ++
Sbjct: 388 LTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSF 447
Query: 1756 ADLSREIPDEVIARFRRIYASPDDVDLFPGGLSERPVAGGMVGPT 1800
+L+ E E+ A + +Y+ D ++L+P L E+P + G T
Sbjct: 448 EELTGE--KEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGET 490
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 1352 LDQFV---TGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTW 1408
L QFV T +I + + P + + +I ++R+ S NEYR +LK ++
Sbjct: 388 LTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSF 447
Query: 1409 ADLSREIPDEVIARFRRIYASPDDVDLFPGGLSERPVA-ALLDNSLDPIGLDF 1460
+L+ E E+ A + +Y+ D ++L+P L E+P A+ ++ +G F
Sbjct: 448 EELTGE--KEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPF 498
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 1874 GRPHSGVDLP-------ALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIA 1926
GR G ++P +I ++R+ S NEYR +LK ++ +L+ E E+ A
Sbjct: 401 GRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTGE--KEMAA 458
Query: 1927 RFRRIYASPDDVDLFPGGLSERPVAD 1952
+ +Y+ D ++L+P L E+P D
Sbjct: 459 ELKALYSDIDVMELYPALLVEKPRPD 484
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 149 PSNLMYKLFEL-EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
P +MY L EH R+ L + +P+W ++ LF+ ++ I+I + + ++Y+ L G
Sbjct: 265 PGLMMYATIWLREHQRVCDILKQEHPEWGDEQLFQTSKLILIGETIKIVIEDYVQHLSG 323
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
EH R+ L + +P+W ++ LF+ ++ I+I + + ++Y+ L G
Sbjct: 277 EHQRVCDILKQEHPEWGDEQLFQTSKLILIGETIKIVIEDYVQHLSG 323
>pdb|1CXP|A Chain A, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1CXP|B Chain B, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1D2V|A Chain A, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D2V|B Chain B, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D7W|A Chain A, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D7W|B Chain B, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D5L|A Chain A, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D5L|B Chain B, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1DNU|A Chain A, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNU|B Chain B, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNW|A Chain A, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|1DNW|B Chain B, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|4DL1|A Chain A, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|B Chain B, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|E Chain E, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|F Chain F, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|I Chain I, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|J Chain J, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|M Chain M, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|N Chain N, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
Length = 104
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 568 CDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLIS-----TPRVHSVSGAPLP 622
C +RTI+G CNN + G S F R LP+ YED S TP V +G P+
Sbjct: 1 CPEQDKYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKR-NGFPVA 59
Query: 623 TARLVS-AMVHADISHLS--NRYSLMVMQLAQTIDHDLTFTP 661
AR VS +V L+ SLM MQ Q +DHDL FTP
Sbjct: 60 LARAVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTP 101
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 1486 CDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLIS-----TPRVHSVSGAPLP 1540
C +RTI+G CNN + G S F R LP+ YED S TP V +G P+
Sbjct: 1 CPEQDKYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKR-NGFPVA 59
Query: 1541 TARLVS-AMVHADISHLS--NRYSLMVMQLAQTIDHDLTFTP 1579
AR VS +V L+ SLM MQ Q +DHDL FTP
Sbjct: 60 LARAVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTP 101
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
Length = 551
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Query: 718 SGQQGFGPREQINQNSAYLDGSLIYGEHACQAKDLRSY-DGKLNVTLMPGR--------K 768
SG+ G G + + +D IYG++ + LR + DGKL ++ G
Sbjct: 181 SGKMGPGFTKALGHG---VDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEA 237
Query: 769 DLLPNTPTHPECRSRYCFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQ 828
+L + P +S+ G PGL TI +REHNR+ + L +P W DEQ
Sbjct: 238 PVLMHYPRGIPPQSQ--MAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQ 295
Query: 829 LFQHARRIMVGQWQHIVYNEFLPRLLG 855
LFQ AR I++G+ IV E++ +L G
Sbjct: 296 LFQTARLILIGETIKIVIEEYVQQLSG 322
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 149 PSNLMYKLFEL-EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
P ++Y L EHNR+ L +P W ++ LF+ AR I+I + + +EY+ L G
Sbjct: 264 PGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG 322
Score = 38.1 bits (87), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
EHNR+ L +P W ++ LF+ AR I+I + + +EY+ L G
Sbjct: 276 EHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG 322
>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
Length = 551
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Query: 718 SGQQGFGPREQINQNSAYLDGSLIYGEHACQAKDLRSY-DGKLNVTLMPGR--------K 768
SG+ G G + + +D IYG++ + LR + DGKL ++ G
Sbjct: 181 SGKMGPGFTKALGHG---VDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEA 237
Query: 769 DLLPNTPTHPECRSRYCFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQ 828
+L + P +S+ G PGL TI +REHNR+ + L +P W DEQ
Sbjct: 238 PVLMHYPRGIPPQSQ--MAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQ 295
Query: 829 LFQHARRIMVGQWQHIVYNEFLPRLLG 855
LFQ AR I++G+ IV E++ +L G
Sbjct: 296 LFQTARLILIGETIKIVIEEYVQQLSG 322
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 149 PSNLMYKLFEL-EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
P ++Y L EHNR+ L +P W ++ LF+ AR I+I + + +EY+ L G
Sbjct: 264 PGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG 322
Score = 38.1 bits (87), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
EHNR+ L +P W ++ LF+ AR I+I + + +EY+ L G
Sbjct: 276 EHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG 322
>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
Length = 553
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Query: 718 SGQQGFGPREQINQNSAYLDGSLIYGEHACQAKDLRSY-DGKLNVTLMPGR--------K 768
SG+ G G + + +D IYG++ + LR + DGKL ++ G
Sbjct: 182 SGKMGPGFTKALGHG---VDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEA 238
Query: 769 DLLPNTPTHPECRSRYCFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQ 828
+L + P +S+ G PGL TI +REHNR+ + L +P W DEQ
Sbjct: 239 PVLMHYPRGIPPQSQ--MAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQ 296
Query: 829 LFQHARRIMVGQWQHIVYNEFLPRLLG 855
LFQ AR I++G+ IV E++ +L G
Sbjct: 297 LFQTARLILIGETIKIVIEEYVQQLSG 323
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 149 PSNLMYKLFEL-EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
P ++Y L EHNR+ L +P W ++ LF+ AR I+I + + +EY+ L G
Sbjct: 265 PGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG 323
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
EHNR+ L +P W ++ LF+ AR I+I + + +EY+ L G
Sbjct: 277 EHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG 323
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In
The Cyclooxygenase Channel Of Prostaglandin Endoperoxide
H Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Query: 718 SGQQGFGPREQINQNSAYLDGSLIYGEHACQAKDLRSY-DGKLNVTLMPGR--------K 768
SG+ G G + + +D IYG++ + LR + DGKL ++ G
Sbjct: 189 SGKMGPGFTKALGHG---VDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEA 245
Query: 769 DLLPNTPTHPECRSRYCFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQ 828
+L + P +S+ G PGL TI +REHNR+ + L +P W DEQ
Sbjct: 246 PVLMHYPRGIPPQSQ--MAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQ 303
Query: 829 LFQHARRIMVGQWQHIVYNEFLPRLLG 855
LFQ AR I++G+ IV E++ +L G
Sbjct: 304 LFQTARLILIGETIKIVIEEYVQQLSG 330
Score = 38.9 bits (89), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 149 PSNLMYKLFEL-EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
P ++Y L EHNR+ L +P W ++ LF+ AR I+I + + +EY+ L G
Sbjct: 272 PGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG 330
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
EHNR+ L +P W ++ LF+ AR I+I + + +EY+ L G
Sbjct: 284 EHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG 330
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
Length = 580
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Query: 718 SGQQGFGPREQINQNSAYLDGSLIYGEHACQAKDLRSY-DGKLNVTLMPGR--------K 768
SG+ G G + + +D IYG++ + LR + DGKL ++ G
Sbjct: 193 SGKMGPGFTKALGHG---VDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEA 249
Query: 769 DLLPNTPTHPECRSRYCFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQ 828
+L + P +S+ G PGL TI +REHNR+ + L +P W DEQ
Sbjct: 250 PVLMHYPRGIPPQSQ--MAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQ 307
Query: 829 LFQHARRIMVGQWQHIVYNEFLPRLLG 855
LFQ AR I++G+ IV E++ +L G
Sbjct: 308 LFQTARLILIGETIKIVIEEYVQQLSG 334
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 149 PSNLMYKLFEL-EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
P ++Y L EHNR+ L +P W ++ LF+ AR I+I + + +EY+ L G
Sbjct: 276 PGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG 334
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
EHNR+ L +P W ++ LF+ AR I+I + + +EY+ L G
Sbjct: 288 EHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG 334
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
pdb|1Q4G|A Chain A, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|1Q4G|B Chain B, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|2AYL|A Chain A, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|2AYL|B Chain B, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|3KK6|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3KK6|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3N8V|A Chain A, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8V|B Chain B, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8W|A Chain A, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
pdb|3N8X|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8X|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8Y|A Chain A, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
pdb|3N8Z|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
pdb|3N8Z|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
Length = 553
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Query: 718 SGQQGFGPREQINQNSAYLDGSLIYGEHACQAKDLRSY-DGKLNVTLMPGR--------K 768
SG+ G G + + +D IYG++ + LR + DGKL ++ G
Sbjct: 182 SGKMGPGFTKALGHG---VDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEA 238
Query: 769 DLLPNTPTHPECRSRYCFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQ 828
+L + P +S+ G PGL TI +REHNR+ + L +P W DEQ
Sbjct: 239 PVLMHYPRGIPPQSQ--MAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQ 296
Query: 829 LFQHARRIMVGQWQHIVYNEFLPRLLG 855
LFQ AR I++G+ IV E++ +L G
Sbjct: 297 LFQTARLILIGETIKIVIEEYVQQLSG 323
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 149 PSNLMYKLFEL-EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
P ++Y L EHNR+ L +P W ++ LF+ AR I+I + + +EY+ L G
Sbjct: 265 PGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG 323
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
EHNR+ L +P W ++ LF+ AR I+I + + +EY+ L G
Sbjct: 277 EHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG 323
>pdb|1MYP|A Chain A, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MYP|B Chain B, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MHL|A Chain A, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
pdb|1MHL|B Chain B, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
pdb|3ZS0|A Chain A, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS0|B Chain B, Human Myeloperoxidase Inactivated By Tx2
Length = 108
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 568 CDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLIS-----TPRVHSVSGAPLP 622
C +RTI+G CNN + G S F R LP+ YED S TP V +G P+
Sbjct: 3 CPEQDKYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKR-NGFPVA 61
Query: 623 TARLVS-AMVHADISHLS--NRYSLMVMQLAQTIDHDLTFTP 661
AR VS +V L+ SLM MQ Q +DHDL FTP
Sbjct: 62 LARAVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTP 103
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 1486 CDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLIS-----TPRVHSVSGAPLP 1540
C +RTI+G CNN + G S F R LP+ YED S TP V +G P+
Sbjct: 3 CPEQDKYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKR-NGFPVA 61
Query: 1541 TARLVS-AMVHADISHLS--NRYSLMVMQLAQTIDHDLTFTP 1579
AR VS +V L+ SLM MQ Q +DHDL FTP
Sbjct: 62 LARAVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTP 103
>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
pdb|1PTH|B Chain B, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
Length = 576
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Query: 718 SGQQGFGPREQINQNSAYLDGSLIYGEHACQAKDLRSY-DGKLNVTLMPGR--------K 768
SG+ G G + + +D IYG++ + LR + DGKL ++ G
Sbjct: 189 SGKMGPGFTKALGHG---VDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEA 245
Query: 769 DLLPNTPTHPECRSRYCFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQ 828
+L + P +S+ G PGL TI +REHNR+ + L +P W DEQ
Sbjct: 246 PVLMHYPRGIPPQSQ--MAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQ 303
Query: 829 LFQHARRIMVGQWQHIVYNEFLPRLLG 855
LFQ AR I++G+ IV E++ +L G
Sbjct: 304 LFQTARLILIGETIKIVIEEYVQQLSG 330
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 149 PSNLMYKLFEL-EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
P ++Y L EHNR+ L +P W ++ LF+ AR I+I + + +EY+ L G
Sbjct: 272 PGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG 330
Score = 38.1 bits (87), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
EHNR+ L +P W ++ LF+ AR I+I + + +EY+ L G
Sbjct: 284 EHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG 330
>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
Length = 553
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Query: 718 SGQQGFGPREQINQNSAYLDGSLIYGEHACQAKDLRSY-DGKLNVTLMPGR--------K 768
SG+ G G + + +D IYG++ + LR + DGKL ++ G
Sbjct: 182 SGKMGPGFTKALGHG---VDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEA 238
Query: 769 DLLPNTPTHPECRSRYCFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQ 828
+L + P +S+ G PGL TI +REHNR+ + L +P W DEQ
Sbjct: 239 PVLMHYPRGIPPQSQ--MAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQ 296
Query: 829 LFQHARRIMVGQWQHIVYNEFLPRLLG 855
LFQ AR I++G+ IV E++ +L G
Sbjct: 297 LFQTARLILIGETIKIVIEEYVQQLSG 323
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 149 PSNLMYKLFEL-EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
P ++Y L EHNR+ L +P W ++ LF+ AR I+I + + +EY+ L G
Sbjct: 265 PGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG 323
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
EHNR+ L +P W ++ LF+ AR I+I + + +EY+ L G
Sbjct: 277 EHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG 323
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
Cyclooxygenase-1
pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
Cyclooxygenase-1
Length = 600
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Query: 718 SGQQGFGPREQINQNSAYLDGSLIYGEHACQAKDLRSY-DGKLNVTLMPGR--------K 768
SG+ G G + + +D IYG++ + LR + DGKL ++ G
Sbjct: 213 SGKMGPGFTKALGHG---VDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEA 269
Query: 769 DLLPNTPTHPECRSRYCFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQ 828
+L + P +S+ G PGL TI +REHNR+ + L +P W DEQ
Sbjct: 270 PVLMHYPRGIPPQSQ--MAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQ 327
Query: 829 LFQHARRIMVGQWQHIVYNEFLPRLLG 855
LFQ AR I++G+ IV E++ +L G
Sbjct: 328 LFQTARLILIGETIKIVIEEYVQQLSG 354
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 149 PSNLMYKLFEL-EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
P ++Y L EHNR+ L +P W ++ LF+ AR I+I + + +EY+ L G
Sbjct: 296 PGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG 354
Score = 38.1 bits (87), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
EHNR+ L +P W ++ LF+ AR I+I + + +EY+ L G
Sbjct: 308 EHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG 354
>pdb|3F9P|A Chain A, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3F9P|B Chain B, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3ZS1|A Chain A, Human Myeloperoxidase Inactivated By Tx5
pdb|3ZS1|B Chain B, Human Myeloperoxidase Inactivated By Tx5
Length = 114
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 568 CDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLIS-----TPRVHSVSGAPLP 622
C +RTI+G CNN + G S F R LP+ YED S TP V +G P+
Sbjct: 3 CPEQDKYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKR-NGFPVA 61
Query: 623 TARLVS-AMVHADISHLS--NRYSLMVMQLAQTIDHDLTFTP 661
AR VS +V L+ SLM MQ Q +DHDL FTP
Sbjct: 62 LARAVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTP 103
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 1486 CDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLIS-----TPRVHSVSGAPLP 1540
C +RTI+G CNN + G S F R LP+ YED S TP V +G P+
Sbjct: 3 CPEQDKYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKR-NGFPVA 61
Query: 1541 TARLVS-AMVHADISHLS--NRYSLMVMQLAQTIDHDLTFTP 1579
AR VS +V L+ SLM MQ Q +DHDL FTP
Sbjct: 62 LARAVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTP 103
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant Of
Prostagladin H Synthase-1 That Forms Predominantly
11-hpete
Length = 600
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 14/147 (9%)
Query: 718 SGQQGFGPREQINQNSAYLDGSLIYGEHACQAKDLRSY-DGKLNVTLMPGR--------K 768
SG+ G G + + +D IYG++ + LR + DGKL ++ G
Sbjct: 213 SGKMGPGFTKALGHG---VDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEA 269
Query: 769 DLLPNTPTHPECRSRYCFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQ 828
+L + P +S+ G PGL TI +REHNR+ + L +P W DEQ
Sbjct: 270 PVLMHYPRGIPPQSQ--MAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQ 327
Query: 829 LFQHARRIMVGQWQHIVYNEFLPRLLG 855
LFQ AR I++G+ IV E+ +L G
Sbjct: 328 LFQTARLILIGETIKIVIEEYAQQLSG 354
Score = 38.1 bits (87), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 149 PSNLMYKLFEL-EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
P ++Y L EHNR+ L +P W ++ LF+ AR I+I + + +EY L G
Sbjct: 296 PGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYAQQLSG 354
Score = 37.4 bits (85), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
EHNR+ L +P W ++ LF+ AR I+I + + +EY L G
Sbjct: 308 EHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYAQQLSG 354
>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
Length = 554
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 14/147 (9%)
Query: 718 SGQQGFGPREQINQNSAYLDGSLIYGEHACQAKDLRSY-DGKLNVTLMPGR--------K 768
SG+ G G + + +D IYG++ + LR + DGKL ++ G
Sbjct: 181 SGKMGPGFTKALGHG---VDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEA 237
Query: 769 DLLPNTPTHPECRSRYCFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQ 828
+L + P +S+ G PGL TI +REH R+ + L +P W DEQ
Sbjct: 238 PVLMHYPRGIPPQSQ--MAVGQEVFGLLPGLMLYATIWLREHQRVCDLLKAEHPTWGDEQ 295
Query: 829 LFQHARRIMVGQWQHIVYNEFLPRLLG 855
LFQ A+ I++G+ IV E++ +L G
Sbjct: 296 LFQTAKLILIGETIKIVIEEYVQQLSG 322
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 149 PSNLMYKLFEL-EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 206
P ++Y L EH R+ L +P W ++ LF+ A+ I+I + + +EY+ L G
Sbjct: 264 PGLMLYATIWLREHQRVCDLLKAEHPTWGDEQLFQTAKLILIGETIKIVIEEYVQQLSG 322
Score = 34.7 bits (78), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIG 54
EH R+ L +P W ++ LF+ A+ I+I + + +EY+ L G
Sbjct: 276 EHQRVCDLLKAEHPTWGDEQLFQTAKLILIGETIKIVIEEYVQQLSG 322
>pdb|4HHR|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
pdb|4HHS|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
Length = 652
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 1722 VDLPALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIARFRRIY-ASPDDV 1780
VDL AL I R R+ VP YNE+R + W DL+ + +E I +Y +++
Sbjct: 489 VDLAALEIYRDRERSVPRYNEFRRSMFMIPITKWEDLTED--EEAIEVLDDVYDGDVEEL 546
Query: 1781 DLFPGGLSERPVAGGMVGPTFACIIGLQFRQLRKCDRFWYETDDPVIRFTEPQLQEIRKA 1840
DL G ++E+ + G + T I + + + DRF+ + I +T+ L+ +
Sbjct: 547 DLLVGLMAEKKIKGFAISETAFYIFLIMATRRLEADRFFTSDFNETI-YTKKGLEWVNTT 605
Query: 1841 TLAKEI 1846
K++
Sbjct: 606 ESLKDV 611
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 1859 MDYP---GEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTWAD 1915
M+YP +I H + RP VDL AL I R R+ VP YNE+R + W D
Sbjct: 466 MNYPMWLRDIVPHDPNGQARP-DHVDLAALEIYRDRERSVPRYNEFRRSMFMIPITKWED 524
Query: 1916 LSREIPDEVIARFRRIY-ASPDDVDLFPGGLSERPV 1950
L+ + +E I +Y +++DL G ++E+ +
Sbjct: 525 LTED--EEAIEVLDDVYDGDVEELDLLVGLMAEKKI 558
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 1375 VDLPALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIARFRRIY-ASPDDV 1433
VDL AL I R R+ VP YNE+R + W DL+ + +E I +Y +++
Sbjct: 489 VDLAALEIYRDRERSVPRYNEFRRSMFMIPITKWEDLTED--EEAIEVLDDVYDGDVEEL 546
Query: 1434 DLFPGGLSERPVAAL 1448
DL G ++E+ +
Sbjct: 547 DLLVGLMAEKKIKGF 561
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 97/211 (45%), Gaps = 36/211 (17%)
Query: 713 FMRSLSGQQGFGPREQINQN--SAYLDGSLIYGEHACQAKDLRSY-DGKLNVTLMPGRKD 769
F+++ GF + +QN + + D S+IYG ++ +R+Y DGKL ++ G
Sbjct: 206 FLKTKEVPTGFFEIKTGSQNIRTPWWDSSVIYGSNSKTLDRVRTYKDGKLKISEETG--- 262
Query: 770 LLPNTPTHPECRSRYCFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQL 829
LL H E ++GD R S G++A+ + ++EHN + + L + DE L
Sbjct: 263 LL----LHDEDG---LAISGDIRNS-WAGVSALQALFIKEHNAVCDALKDEDDDLEDEDL 314
Query: 830 FQHARRIMVGQWQHIVYNEFLPRLLGLNAV------NLYGL---KLSPTGYYKGYN---- 876
+++AR + I ++ +LL + + N YGL K + + G +
Sbjct: 315 YRYARLVTSAVVAKIHTIDWTVQLLKTDTLLAGMRANWYGLLGKKFKDSFGHAGSSILGG 374
Query: 877 --------DNCKPNIMTEFATAAYRIGHSLL 899
++ P +TE T+ YR+ HSLL
Sbjct: 375 VVGMKKPQNHGVPYSLTEDFTSVYRM-HSLL 404
>pdb|3M6C|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Groel1
Apical Domain
Length = 194
Score = 37.0 bits (84), Expect = 0.10, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 1918 REIPDEVIARFRRIYASPDDVDLFPGGLSERPVADDNLARYLRARLQLNDT-YGRKKIYH 1976
RE+ EV+ RR+ S DD + GG + VA N A++LRA + +D+ + R+K+
Sbjct: 125 REVGLEVLGSARRVVVSKDDTVIVDGGGTAEAVA--NRAKHLRAEIDKSDSDWDREKLGE 182
Query: 1977 GLAR 1980
LA+
Sbjct: 183 RLAK 186
>pdb|2IF2|A Chain A, Crystal Structure Of The Putative Dephospho-Coa Kinase
From Aquifex Aeolicus, Northeast Structural Genomics
Target Qr72.
pdb|2IF2|B Chain B, Crystal Structure Of The Putative Dephospho-Coa Kinase
From Aquifex Aeolicus, Northeast Structural Genomics
Target Qr72.
pdb|2IF2|C Chain C, Crystal Structure Of The Putative Dephospho-Coa Kinase
From Aquifex Aeolicus, Northeast Structural Genomics
Target Qr72
Length = 204
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 36/77 (46%)
Query: 1 MYKLFELEHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIGEVACPS 60
+ KL E+ H L E+ ++ + SED LF S+++ + + YD+ + V C
Sbjct: 80 LRKLEEITHRALYKEIEKITKNLSEDTLFILEASLLVEKGTYKNYDKLIVVYAPYEVCKE 139
Query: 61 RNIIASPSGKEISHKIK 77
R I S ++ + K
Sbjct: 140 RAIKRGXSEEDFERRWK 156
>pdb|3K1Q|D Chain D, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3K1Q|E Chain E, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3IYL|U Chain U, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|V Chain V, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 412
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 207 ECVNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGECVNPDWSEGV 255
C++P W ++ E A +++ Q VT LP LI E P WS+GV
Sbjct: 268 RCISPHWQHQIV-EVAGALMS---QSVTAVTGLPALIDEATLPAWSQGV 312
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 245 ECVNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGECVNPDWSEGV 293
C++P W ++ E A +++ Q VT LP LI E P WS+GV
Sbjct: 268 RCISPHWQHQIV-EVAGALMS---QSVTAVTGLPALIDEATLPAWSQGV 312
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 283 ECVNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGECVNPDWSEGV 331
C++P W ++ E A +++ Q VT LP LI E P WS+GV
Sbjct: 268 RCISPHWQHQIV-EVAGALMS---QSVTAVTGLPALIDEATLPAWSQGV 312
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 321 ECVNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGECVNPDWSEGV 369
C++P W ++ E A +++ Q VT LP LI E P WS+GV
Sbjct: 268 RCISPHWQHQIV-EVAGALMS---QSVTAVTGLPALIDEATLPAWSQGV 312
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 359 ECVNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGECVNPDWSEGV 407
C++P W ++ E A +++ Q VT LP LI E P WS+GV
Sbjct: 268 RCISPHWQHQIV-EVAGALMS---QSVTAVTGLPALIDEATLPAWSQGV 312
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 397 ECVNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGECVNPDWSEGV 445
C++P W ++ E A +++ Q VT LP LI E P WS+GV
Sbjct: 268 RCISPHWQHQIV-EVAGALMS---QSVTAVTGLPALIDEATLPAWSQGV 312
>pdb|2R00|C Chain C, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii Complexed With Asa From Vibrio Cholerae
Length = 336
Score = 30.4 bits (67), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 9 HNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIGEV------ACPSRN 62
H L + E++ W+ + EA +VI H YD +P+++ EV +RN
Sbjct: 67 HIALFSAGGELSAKWAP--IAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFRNRN 124
Query: 63 IIASPSGKEISHKIKTSP 80
IIA+P+ I + P
Sbjct: 125 IIANPNXSTIQMLVALKP 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,214,039
Number of Sequences: 62578
Number of extensions: 2933400
Number of successful extensions: 6347
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 5530
Number of HSP's gapped (non-prelim): 682
length of query: 2042
length of database: 14,973,337
effective HSP length: 114
effective length of query: 1928
effective length of database: 7,839,445
effective search space: 15114449960
effective search space used: 15114449960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)