Query psy12194
Match_columns 2042
No_of_seqs 671 out of 2069
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 21:13:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12194.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12194hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2408|consensus 100.0 1E-119 2E-124 1158.7 37.8 528 571-1276 148-718 (719)
2 PF03098 An_peroxidase: Animal 100.0 2E-109 5E-114 1056.5 15.0 463 574-1098 1-501 (530)
3 PLN02283 alpha-dioxygenase 100.0 4.2E-87 9.1E-92 848.4 29.2 435 572-1098 83-579 (633)
4 KOG2408|consensus 100.0 5.3E-74 1.1E-78 737.1 26.9 386 1489-1893 148-718 (719)
5 PF03098 An_peroxidase: Animal 100.0 1.1E-64 2.5E-69 646.4 10.9 345 1492-1870 1-530 (530)
6 PLN02283 alpha-dioxygenase 100.0 1.8E-56 4E-61 568.9 20.2 370 41-442 103-616 (633)
7 smart00214 VWC von Willebrand 67.7 2.9 6.2E-05 39.1 1.4 38 1281-1318 1-39 (59)
8 PF00093 VWC: von Willebrand f 43.4 5.9 0.00013 36.8 -0.8 36 1281-1316 1-36 (57)
9 PF10929 DUF2811: Protein of u 18.1 96 0.0021 29.4 2.3 16 169-184 18-33 (57)
10 PF12714 TILa: TILa domain 13.8 1.2E+02 0.0025 28.5 1.8 27 1280-1306 1-29 (56)
No 1
>KOG2408|consensus
Probab=100.00 E-value=1e-119 Score=1158.66 Aligned_cols=528 Identities=40% Similarity=0.693 Sum_probs=457.0
Q ss_pred CCCccCCCCCCcCCCCCcCCCCCCCccccccCcCCCCcCCccccCCCCCCCCCHHHHHHhhhcCc-cCCChhhHHHHHHH
Q psy12194 571 TSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTPRVHSVSGAPLPTARLVSAMVHADI-SHLSNRYSLMVMQL 649 (2042)
Q Consensus 571 ~~~YRs~DGsCNNl~~P~wG~a~tpf~Rllpp~Y~DGv~~Pr~~s~~G~~LPspR~VS~~l~~~~-~~~~~~~t~m~m~w 649 (2042)
.++|||+||+|||+.+|.||+++++|.|++||.|+||+++||+|+.+ .+||+||+||++|+.+. ..++.++|+|+|||
T Consensus 148 ~~~yRt~dG~CNN~~~P~~Gas~~~~~Rllpp~Yedg~~~p~~~~~~-~~lP~~R~vS~~l~~~~~~~~~~~~~~~~mqw 226 (719)
T KOG2408|consen 148 HSKYRTIDGTCNNLRNPTLGASNSPFRRLLPPKYEDGFSTPRGWSDG-TPLPSARLVSNKLLSRSFSPPDSKFNHMAMQW 226 (719)
T ss_pred ccCccccccccCCCCCCCcccccChhhccCCccccccccCccccccC-CCCCchHHhhHhhhccccCCCCcchhHHHHHH
Confidence 49999999999999999999999999999999999999999996655 99999999999999888 88999999999999
Q ss_pred HHHHHhhcccCccccCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCccccccccCCCCC---CCCcc
Q psy12194 650 AQTIDHDLTFTPVYRGFFTSIPDCRPCDSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRSLSGQQ---GFGPR 726 (2042)
Q Consensus 650 GQFidHDl~~t~~~~~~~~~~~~C~~c~~~~~~~~~C~pI~ip~~Dp~y~~~~~~~g~~~Cm~f~RS~~~~~---~~gpR 726 (2042)
||||+|||+++|......+ ...|..|++++..+++|+||.+|++||+|.. +. .||+|+||.++|. .+++|
T Consensus 227 gQFi~HDl~~~~~~~~~~~-~~~~~~C~~~~~~~p~C~pi~~p~~dp~~~~-----~~-~C~~f~Rs~~~~~~~~~~~~r 299 (719)
T KOG2408|consen 227 GQFIDHDLYFTPLSTVQNG-ELNIRCCNKPQLPSPPCFPIKIPPNDPYFPS-----NQ-RCLPFVRSLPACGSGYNLGPR 299 (719)
T ss_pred HHHhcccccccCCcccccC-CccccccCCCcCCCCcccceecCCCCCccCC-----cc-cceeceecCCCccccccCChh
Confidence 9999999999997766544 5666668988999999999999999999874 33 7999999999997 78999
Q ss_pred ccccCCCCccccccCCCCCHhhhccccccC---Ccccccc--cCCCCCCCCCCCC-CCCcc------cccccccCCCCCC
Q psy12194 727 EQINQNSAYLDGSLIYGEHACQAKDLRSYD---GKLNVTL--MPGRKDLLPNTPT-HPECR------SRYCFVAGDGRAS 794 (2042)
Q Consensus 727 eQiN~~TsfLD~S~VYGSs~~~a~~LR~~~---G~L~~~~--~~~~~~~LP~~~~-~~~c~------~~~Cf~aGD~R~N 794 (2042)
||+|++|||||+|+||||+++++++||.|+ |+|+++. ...++.+||.+.. ...|. ..+||.|||.|+|
T Consensus 300 eQlNq~T~~lD~S~IYGss~~~~~~lR~f~~~~g~l~~~~~~~~~~~~~lP~~~~~~~~c~~~~~~~~~~cf~aGD~R~~ 379 (719)
T KOG2408|consen 300 EQLNQLTSFLDASVIYGSSDEDARKLRLFKDGKGLLRVDTGLFENGRPLLPFSTDPPNSCRSKPPGAPKPCFTAGDERAN 379 (719)
T ss_pred hhhccccccccchhccCCCHHHHHHHhcccCcccceeecccccccCcccCCCCCCCCccccccCCCCCCcccccCccccc
Confidence 999999999999999999999999999998 6777763 2357788888754 44686 2589999999999
Q ss_pred CChhHHHHHHHHhhhhHHHHHHHHhhCCCCChhHhHHHHHHHHHHHhhhhhhhhhhhhhhCcchhhccccccCCCCCcCC
Q psy12194 795 EQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKG 874 (2042)
Q Consensus 795 e~p~LtalHtlflReHNRiA~~L~~~NP~W~DE~LFQEARrIviA~~QhIty~E~LP~iLG~~~~~~~~L~~~~~g~~~g 874 (2042)
++|+|++|||+|+|||||||++|+.+||||+||+|||||||||+|++|||||+||||.|||.. + ... .|+|.|
T Consensus 380 ~~pgL~~~hti~lREHNRiA~~Lk~~np~W~dE~lfQeaRkI~~A~~q~Ity~e~LP~ilG~~-~-----~~~-~g~~~g 452 (719)
T KOG2408|consen 380 EQPGLAALHTLFLREHNRIATELKALNPHWSDERLFQEARKIVGAQVQHITYNEYLPKLLGAP-L-----KVS-LGGYRG 452 (719)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHhhhhHHhhhhhhcCcc-c-----ccC-CccccC
Confidence 999999999999999999999999999999999999999999999999999999999999922 1 111 489999
Q ss_pred CCCCCCCccHHHHHHHHHhhccccCCCCcchh-----------------hcccccccccCCCccc-cccccccCcchhhc
Q psy12194 875 YNDNCKPNIMTEFATAAYRIGHSLLRPFIPRL-----------------VIARFRRIYASPDDVD-LFPGGLSERPVAAR 936 (2042)
Q Consensus 875 Yd~~v~p~i~nEFatAAfRfgHSli~~~~~r~-----------------~f~~p~~l~~~~g~id-llrGl~~~p~~~~d 936 (2042)
|++++||+|+||||+||||||||||++.+.++ .|++|..+.. +|++| ++|||+.++++..+
T Consensus 453 Y~~~~dp~IsneFataAfRfgHsli~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~i~~-~ggid~llrGl~~~~~~~~~ 531 (719)
T KOG2408|consen 453 YDPNVDPTISNEFATAAFRFGHSLIPPFFQRLDENFQPIGEVVNLPLHDAFFNPWLILN-EGGIDPLLRGLTTQPAKMPD 531 (719)
T ss_pred cCCCCChhhhhhhhHHHHhhhcccCchhhhhhcccCcccccccCchhhhhhcchhhhhh-ccChhHHHHHHHhchhhccc
Confidence 99999999999999999999999999999876 3555666655 78999 99999999999984
Q ss_pred cccccCChhhhhcCC---CCcc-chhHHHHHhhhcCC--CCccccccCCCCCCcHHHHHHHHHhhCCCCccccccCcccC
Q psy12194 937 LRRIYASPDDVDLFP---GGLS-EQPVAVIVRFRRIY--ASPDDVDLFPGGLSERPVAARLRRIYASPDDVDLFPGGLSE 1010 (2042)
Q Consensus 937 ~~~l~~~~el~~~f~---~G~~-~DL~AlnIQRGRDH--~sf~dl~~~~~~~~~~~~~~~L~~lY~~~~diDL~~G~l~E 1010 (2042)
+.+++.++++.++ +..+ +||+|||||||||| ++|+++++|+.. +.. .+++|+. +.+.
T Consensus 532 --d~~~~~~i~~~lf~~~~~~~~~DL~ainIQRgRDhGlp~Yn~yR~~cgL-~~~----------~s~edL~---~~i~- 594 (719)
T KOG2408|consen 532 --DQLLNGEITERLFVKTDEDGELDLAALNIQRGRDHGLPPYNEYRKFCGL-SPA----------TSFEDLS---DEIE- 594 (719)
T ss_pred --chhcCHHHHHHHhhhcCcccccchhhhhhhccccCCCCCHHHHHHHcCC-CCC----------CCHHHhh---hhhh-
Confidence 2358999998876 2223 59999999999999 788887765533 221 1122210 0000
Q ss_pred ccccccccccccccccccccccccccccccCCCCcchhhhccccccCCCCCCcChHHHHHHHHHHHHhhccCcceeecCC
Q psy12194 1011 RPVAVGTLSFKLHCLKGYRTFEKKSCEKTHTNIDNVDLLIGGLLENSEPGSALGITFSCLLARQFSVLKDSDRFWYENDF 1090 (2042)
Q Consensus 1011 ~p~~~~~~~~r~~~~~~~~~f~~~~~~~~y~~vddIDL~vGGL~E~~~~G~~vGPTf~CII~~QF~rlR~GDRFwYEN~~ 1090 (2042)
..+ ...++.+|+++||||||||+++|++++|++|||||+|||++||.|+|+|||||||| .
T Consensus 595 ~~~-------------------~~kl~~lY~~~ddiDL~vG~~~E~~~~g~~vGPTl~cii~~Qf~r~r~gDRf~yen-~ 654 (719)
T KOG2408|consen 595 PEI-------------------INKLRTLYGTPDDIDLYVGLLLEKPLPGGLVGPTLACIIAEQFLRLRDGDRFWYEN-F 654 (719)
T ss_pred HHH-------------------HHHHHHhcCCchhhcccccccccccCCCceecccHHHHHHHHHHHHhccCceeecC-C
Confidence 000 11355788899999999999999999999999999999999999999999999999 8
Q ss_pred CCCCCCCCCCCCCCCCcccccCCChhhHHHhhhcccchhHHHhHHhhhhchhcccccccccccccccccccccccccccc
Q psy12194 1091 PPTSFSRGISVDPASPTGIAAAFSKPTAEALRLSNNSIFYEYATRELMRSLKNHTIFYYGMCNFVHVFLFWFSQEFPWIL 1170 (2042)
Q Consensus 1091 ~p~~FT~~~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~i~k~sl~~~~~~~~~~~~~~~~~~~~~~~~ 1170 (2042)
.|+.||++ ||+ ||||+||
T Consensus 655 ~~~~Ft~~------------------QL~--------------------ei~k~sL------------------------ 672 (719)
T KOG2408|consen 655 NPGVFTPE------------------QLE--------------------EIRKVSL------------------------ 672 (719)
T ss_pred CCCccCHH------------------HHH--------------------HHHHhhc------------------------
Confidence 99999999 999 9999999
Q ss_pred cCCcchhhhhHHHhhcccchhccccccCCCCccCCCCCCCCCCchhhhHHHHHhhcccccCCceeeccC-CC-Ccccc-c
Q psy12194 1171 LHPQGLLLHSAILITGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIGHSLLRPFILPCTN-EK-GTMQQ-N 1247 (2042)
Q Consensus 1171 ~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~n-~~-~~~q~-~ 1247 (2042)
|| +.|+| .+ .++++ +
T Consensus 673 ---------ar-----------------------------------------------------iiC~N~~~~~~~~~~~ 690 (719)
T KOG2408|consen 673 ---------AR-----------------------------------------------------IICDNGTKITKVSRFD 690 (719)
T ss_pred ---------hh-----------------------------------------------------eeecCCcccccccccC
Confidence 99 99999 55 66666 9
Q ss_pred cccCCCCCCCCCcCCCCCCCCCccccccC
Q psy12194 1248 VLEMPNDFTNLRVPCNALPEININMWKQN 1276 (2042)
Q Consensus 1248 ~f~~~~~~~~~~~~c~~~p~~~~~~w~~~ 1276 (2042)
+|..++.. +..++|++||.+||++|++.
T Consensus 691 ~f~~~~~~-~~~~~c~~ip~~dl~~w~~~ 718 (719)
T KOG2408|consen 691 VFDFPDAP-NDPVPCSSIPGLDLNAWREQ 718 (719)
T ss_pred CccccccC-CCCCCccccchhhhhhhhhc
Confidence 99999876 99999999999999999963
No 2
>PF03098 An_peroxidase: Animal haem peroxidase; InterPro: IPR002007 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. On the basis of sequence similarity, a number of animal haem peroxidases can be categorised as members of a superfamily: myeloperoxidase (MPO); eosinophil peroxidase (EPO); lactoperoxidase (LPO); thyroid peroxidase (TPO); prostaglandin H synthase (PGHS); and peroxidasin [, , ]. MPO plays a major role in the oxygen-dependent microbicidal system of neutrophils. EPO from eosinophilic granulocytes participates in immunological reactions, and potentiates tumor necrosis factor (TNF) production and hydrogen peroxide release by human monocyte-derived macrophages [, ]. In the main, MPO (and possibly EPO) utilises Cl-ions and H2O2 to form hypochlorous acid (HOCl), which can effectively kill bacteria or parasites. In secreted fluids, LPO catalyses the oxidation of thiocyanate ions (SCN-) by H2O2, producing the weak oxidising agent hypothiocyanite (OSCN-), which has bacteriostatic activity []. TPO uses I- ions and H2O2 to generate iodine, and plays a central role in the biosynthesis of thyroid hormones T(3) and T(4). To date, the 3D structures of MPO and PGHS have been reported. MPO is a homodimer: each monomer consists of a light (A or B) and a heavy (C or D) chain resulting from post-translational excision of 6 residues from the common precursor. Monomers are linked by a single inter-chain disulphide. Each monomer includes a bound calcium ion []. PGHS exists as a symmetric dimer, each monomer of which consists of 3 domains: an N-terminal epidermal growth factor (EGF) like module; a membrane-binding domain; and a large C-terminal catalytic domain containing the cyclooxygenase and the peroxidase active sites. The catalytic domain shows striking structural similarity to MPO. The cyclooxygenase active site, which catalyses the formation of prostaglandin G2 (PGG2) from arachidonic acid, resides at the apex of a long hydrophobic channel, extending from the membrane-binding domain to the centre of the molecule. The peroxidase active site, which catalyses the reduction of PGG2 to PGH2, is located on the other side of the molecule, at the haem binding site []. Both MPO and the catalytic domain of PGHS are mainly alpha-helical, 19 helices being identified as topologically and spatially equivalent; PGHS contains 5 additional N-terminal helices that have no equivalent in MPO. In both proteins, three Asn residues in each monomer are glycosylated.; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1FE2_A 1PGG_B 1PGF_A 3N8W_B 1IGZ_A 3KK6_B 3N8Z_A 1Q4G_A 1PTH_A 1EQH_A ....
Probab=100.00 E-value=2.3e-109 Score=1056.50 Aligned_cols=463 Identities=43% Similarity=0.726 Sum_probs=350.3
Q ss_pred ccCCCCCCcCCCCCcCCCCCCCccccccCcCCCCcCCccccCCCCCCCCCHHHHHHhhhcCcc---CCChhhHHHHHHHH
Q psy12194 574 FRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTPRVHSVSGAPLPTARLVSAMVHADIS---HLSNRYSLMVMQLA 650 (2042)
Q Consensus 574 YRs~DGsCNNl~~P~wG~a~tpf~Rllpp~Y~DGv~~Pr~~s~~G~~LPspR~VS~~l~~~~~---~~~~~~t~m~m~wG 650 (2042)
|||+||+|||+.||.||+++|||.|+|||.|+||+++||. +++|.+||+||.||+.|+.... ..++.+|+|+|+||
T Consensus 1 yRt~dG~cNN~~~p~~G~~~~~~~Rllp~~Y~dg~~~pr~-~~~g~~lP~pR~is~~l~~~~~~~~~~~~~~t~l~~~~g 79 (530)
T PF03098_consen 1 YRTYDGSCNNLANPSWGAAGTPFRRLLPPAYADGVSEPRG-SSNGSPLPNPREISNALFRRKDGFDPSHSGLTALFMQWG 79 (530)
T ss_dssp S--SSSTTSSSSSTTTT-SSEE-BESS-B--TTSSSBTTT-SBTTBS---HHHHHHHHTB-SSGTTBEEEEEEHHHHHHH
T ss_pred CCCCCCCccCCCcccccCCCCcccccCCcccccccccccc-ccCCccCCCHHHHHHHHhhcccccCCCCCcchHHHHHHH
Confidence 9999999999999999999999999999999999999998 9999999999999999997643 34678999999999
Q ss_pred HHHHhhcccCccccCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCccccccccCCCCC----CCCcc
Q psy12194 651 QTIDHDLTFTPVYRGFFTSIPDCRPCDSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRSLSGQQ----GFGPR 726 (2042)
Q Consensus 651 QFidHDl~~t~~~~~~~~~~~~C~~c~~~~~~~~~C~pI~ip~~Dp~y~~~~~~~g~~~Cm~f~RS~~~~~----~~gpR 726 (2042)
|||+|||++++... . |+ + |++|+||+||++||+|++ .. +||+|+||.++++ ...+|
T Consensus 80 Qfi~HDi~~~~~~~-~------C~--~-----~~~c~~I~ip~~Dp~~~~-----~~-~c~~~~Rs~~~~~~~~~~~~~r 139 (530)
T PF03098_consen 80 QFIDHDITLTPDSS-S------CS--D-----HPECFPIPIPPDDPFYRP-----FV-RCMPFTRSAPAPDPGQSCSLPR 139 (530)
T ss_dssp HHHHHHH--BEBTT-T------HH--C-----BTTB--EE--TTEHHHHH-----TT-SEE--B-B-BSSTSSS-SSSST
T ss_pred HHHhhhhccccccc-c------cc--C-----CCCccccccCCCcccccC-----CC-CCcccccccccccCCCCCccch
Confidence 99999999997432 1 51 2 899999999999999875 23 8999999999865 23499
Q ss_pred ccccCCCCccccccCCCCCHhhhccccc-cC-Ccccccc----cCCCCCCCCCCCCC--CCcccccccccCCCCCCCChh
Q psy12194 727 EQINQNSAYLDGSLIYGEHACQAKDLRS-YD-GKLNVTL----MPGRKDLLPNTPTH--PECRSRYCFVAGDGRASEQPG 798 (2042)
Q Consensus 727 eQiN~~TsfLD~S~VYGSs~~~a~~LR~-~~-G~L~~~~----~~~~~~~LP~~~~~--~~c~~~~Cf~aGD~R~Ne~p~ 798 (2042)
||+|++|||||||+||||++++++.||+ ++ |+|++.. ..+++++||..... ..| .||++||.|+||+|+
T Consensus 140 eq~N~~T~~lD~S~vYGs~~~~~~~LR~~~~~G~L~~~~~~~~~~~~~~~lp~~~~~~~~~~---~~f~~GD~R~ne~~~ 216 (530)
T PF03098_consen 140 EQINQATSYLDLSQVYGSSEEQARRLRSSFKGGKLKSDNGEFPPPNGGGLLPSDDPPTDSGC---RCFLAGDPRVNENPG 216 (530)
T ss_dssp TBEE-STSSSS-HHHH-SSHHHHHHTBESSTTTEB--ETSSEEBBTTBES--B-TSCSSGHH---GSB-TSSTTTTSBHH
T ss_pred hhhccccceeecccccCCCHHHHHHhhcchhhhhhhcccccccccCCCCCCCCCcccccccc---cccccccccccchHH
Confidence 9999999999999999999999999999 88 9999832 23567788887621 124 899999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhCCCCChhHhHHHHHHHHHHHhhhhhhhhhhhhhhCcchhhccccccCCCCCcCCCCCC
Q psy12194 799 LTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDN 878 (2042)
Q Consensus 799 LtalHtlflReHNRiA~~L~~~NP~W~DE~LFQEARrIviA~~QhIty~E~LP~iLG~~~~~~~~L~~~~~g~~~gYd~~ 878 (2042)
|++|||+|+|||||||++|+++||+|+||+||||||+||+|+||||||+||||+|||.+.|+++.+.+...|++.+|+++
T Consensus 217 l~~lhtlflReHNria~~L~~~np~w~de~lFqeAR~iv~a~~Q~Ivy~E~LP~llG~~~~~~~~~~~~~~g~~~~y~~~ 296 (530)
T PF03098_consen 217 LTALHTLFLREHNRIADELKKINPHWDDERLFQEARRIVIAQYQHIVYNEYLPALLGPEAMNKFLLPPLNNGYYKGYDPS 296 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHHHHHHHTTHHHHHGHGGHHHHS-G----GCGTTS-TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHhhhhHhhhhhhhcchhhhhhccccccccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988877777899999999
Q ss_pred CCCccHHHHHHHHHhhccccCCCCcchh---------------hccccc-ccccCCCccc-cccccccCcchhhcccccc
Q psy12194 879 CKPNIMTEFATAAYRIGHSLLRPFIPRL---------------VIARFR-RIYASPDDVD-LFPGGLSERPVAARLRRIY 941 (2042)
Q Consensus 879 v~p~i~nEFatAAfRfgHSli~~~~~r~---------------~f~~p~-~l~~~~g~id-llrGl~~~p~~~~d~~~l~ 941 (2042)
++|+|++|||+||||||||||++.+.+. .|++|. .++. ++++| +++|+++++++..|. ..+
T Consensus 297 ~~~~i~~EFa~aA~RfgHs~i~~~~~~~~~~~~~~~~~~~L~d~f~~~~~~~~~-~~gid~ll~G~~~~~a~~~d~-~~~ 374 (530)
T PF03098_consen 297 VDPSISNEFAAAAYRFGHSMIPDTYDRWDENFEIPEPSLPLSDAFFNPSNRLLE-EGGIDPLLRGLASQPAQKVDN-PRF 374 (530)
T ss_dssp S--S-BTTH-HHHGGGGGGGS-SEEEEBTTTSBETTSEEEGGGGBT-HH-HHHT-TTCSHHHHHHHHHSEEEHHBT-TBH
T ss_pred CCCchhHHHHHHHHHhhheeehhhhhhccccCCcccccccccccccCcchhhhh-ccchHHHHhHHhhCccccccH-HHH
Confidence 9999999999999999999999988754 466676 4444 67898 999999999999873 234
Q ss_pred CChhhhhcCCC--Cc-c-chhHHHHHhhhcCC--CCccccccCCCCCCcHHHHHHHHHhhCCCCccccccCcccCccccc
Q psy12194 942 ASPDDVDLFPG--GL-S-EQPVAVIVRFRRIY--ASPDDVDLFPGGLSERPVAARLRRIYASPDDVDLFPGGLSERPVAV 1015 (2042)
Q Consensus 942 ~~~el~~~f~~--G~-~-~DL~AlnIQRGRDH--~sf~dl~~~~~~~~~~~~~~~L~~lY~~~~diDL~~G~l~E~p~~~ 1015 (2042)
+++++++.++. +. + .||+|+|||||||| ++|++++.+. +++. ++.+.++. +.+....+
T Consensus 375 ~~~~l~~~lf~~~~~~~~~DL~a~nIqRGRdhGLp~yn~~R~~c-gl~~---~~sf~dl~----------~~~~~~~i-- 438 (530)
T PF03098_consen 375 LVDDLRNHLFGPRNVPGSLDLAALNIQRGRDHGLPSYNDYREFC-GLPP---ATSFEDLT----------DEISDEEI-- 438 (530)
T ss_dssp SHHHHHTSEESTTSSSEEEHHHHHHHHHHHHTTB-BHHHHHHHT-T-------SSHHHHH----------HHHTSHHH--
T ss_pred hhhHhhcccccccCCcchhHHHHHHHHHHHHhCCchHHHHHHHh-ccCC---CCCHHHhh----------hhhhHHHH--
Confidence 88888887762 22 2 29999999999999 7777766332 2221 11222221 10110000
Q ss_pred cccccccccccccccccccccccccCCCCcchhhhccccccCCCCCCcChHHHHHHHHHHHHhhccCcceeecCCCCCCC
Q psy12194 1016 GTLSFKLHCLKGYRTFEKKSCEKTHTNIDNVDLLIGGLLENSEPGSALGITFSCLLARQFSVLKDSDRFWYENDFPPTSF 1095 (2042)
Q Consensus 1016 ~~~~~r~~~~~~~~~f~~~~~~~~y~~vddIDL~vGGL~E~~~~G~~vGPTf~CII~~QF~rlR~GDRFwYEN~~~p~~F 1095 (2042)
...++++|++|||||||||||+|++++|++|||||+|||++||.|+|+|||||||| |++|
T Consensus 439 -----------------~~~L~~~Y~~vddvDL~vG~laE~~~~G~~lGpt~~~Ii~~qf~~l~~gDRf~yen---~~~f 498 (530)
T PF03098_consen 439 -----------------AAALRALYGHVDDVDLWVGGLAEKPVPGGLLGPTFSCIIAEQFSRLRRGDRFWYEN---PGSF 498 (530)
T ss_dssp -----------------HHHHHHHHSSGGGSBHHHHHHHS-BSTTSSSBHHHHHHHHHHHHHHHHTSTTGTTS---CTTC
T ss_pred -----------------HHHHHHhccchhcccccceeeeeccccCCCCCHHHHhHHHHHHHHHHhcCcccccC---cCcC
Confidence 12356788999999999999999999999999999999999999999999999996 5889
Q ss_pred CCC
Q psy12194 1096 SRG 1098 (2042)
Q Consensus 1096 T~~ 1098 (2042)
|++
T Consensus 499 t~~ 501 (530)
T PF03098_consen 499 TPE 501 (530)
T ss_dssp THH
T ss_pred CHH
Confidence 999
No 3
>PLN02283 alpha-dioxygenase
Probab=100.00 E-value=4.2e-87 Score=848.42 Aligned_cols=435 Identities=21% Similarity=0.295 Sum_probs=332.4
Q ss_pred CCccCCCCCCcCCCCCcCCCCCCCccccccCc-CCCCcCCccccCCCCCCCCCHHHHHHhhhcCc-cC-CChhhHHHHHH
Q psy12194 572 SPFRTISGRCNNLVNTEHGRSMTTFSRLLPSV-YEDLISTPRVHSVSGAPLPTARLVSAMVHADI-SH-LSNRYSLMVMQ 648 (2042)
Q Consensus 572 ~~YRs~DGsCNNl~~P~wG~a~tpf~Rllpp~-Y~DGv~~Pr~~s~~G~~LPspR~VS~~l~~~~-~~-~~~~~t~m~m~ 648 (2042)
.+|||+||+|||+.||.||++||||.|++||. |.||+ .+|+||.||++++... .. +....|+|+|+
T Consensus 83 ~~yRt~DGscNNl~~P~~G~agt~f~R~v~p~~~~~~~-----------~~P~pr~vs~~ll~r~~f~~~~~~~n~~~~~ 151 (633)
T PLN02283 83 YPYRTADGKCNDPFNEGAGSQGTFFGRNMPPVDQKDKL-----------LDPHPSVVATKLLARKKFIDTGKQFNMIAAS 151 (633)
T ss_pred ccccCCCCCCcCCCCcccccCCCccccCCCccccCCCC-----------CCCCHHHHHHHHHhhccccCCCCcchHHHHH
Confidence 79999999999999999999999999999996 54443 4799999999999643 33 24578999999
Q ss_pred HHHHHHhhcccCccccCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCccccccccCCCCCC--CCcc
Q psy12194 649 LAQTIDHDLTFTPVYRGFFTSIPDCRPCDSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRSLSGQQG--FGPR 726 (2042)
Q Consensus 649 wGQFidHDl~~t~~~~~~~~~~~~C~~c~~~~~~~~~C~pI~ip~~Dp~y~~~~~~~g~~~Cm~f~RS~~~~~~--~gpR 726 (2042)
||||++|||+.... ..+|.+|.+|.... .. -.. +||+|.||.+++.. ..+|
T Consensus 152 w~Qf~~HD~~~~~~--------------------~~~~~~i~~p~~~~--~~----~~~-~~~~f~RT~~~~~~~~~~~~ 204 (633)
T PLN02283 152 WIQFMIHDWIDHLE--------------------DTQQIELTAPKEVA--SQ----CPL-KSFKFYKTKEVPTGSPDIKT 204 (633)
T ss_pred HHHHHHhhhhhhcC--------------------ccccccccCCcccc--cC----Ccc-cccccccCCCCCCCCCCCCc
Confidence 99999999876521 11344555553210 00 112 79999999987652 2389
Q ss_pred ccccCCCCccccccCCCCCHhhhccccccC-CcccccccCCCCCCCCCCCCCCCcccccccccCCCCCCCChhHHHHHHH
Q psy12194 727 EQINQNSAYLDGSLIYGEHACQAKDLRSYD-GKLNVTLMPGRKDLLPNTPTHPECRSRYCFVAGDGRASEQPGLTAMHTI 805 (2042)
Q Consensus 727 eQiN~~TsfLD~S~VYGSs~~~a~~LR~~~-G~L~~~~~~~~~~~LP~~~~~~~c~~~~Cf~aGD~R~Ne~p~LtalHtl 805 (2042)
+|+|++|||||||+||||+++++++||+|+ |+||++. ..+||... ..||++||.| |++|+|++||||
T Consensus 205 ~qiN~~Ts~lD~S~IYGss~~~~~~LRtf~~GkLk~~~----~~~l~~~~-------~~~~~~Gd~r-n~~pGL~~lhtL 272 (633)
T PLN02283 205 GSLNIRTPWWDGSVIYGSNEKGLRRVRTFKDGKLKISE----DGLLLHDE-------DGIPISGDVR-NSWAGVSLLQAL 272 (633)
T ss_pred cccccccceeecccccCCCHHHHHhhhCCCCCccCcCC----CCCCCCCc-------cCCcccCccc-cccHHHHHHHHH
Confidence 999999999999999999999999999999 9999853 23566532 2499999999 899999999999
Q ss_pred HhhhhHHHHHHHHhhCCCCChhHhHHHHHHHHHHHhhhhhhhhhhhhhhCcchh------hccccccC------------
Q psy12194 806 LMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNEFLPRLLGLNAV------NLYGLKLS------------ 867 (2042)
Q Consensus 806 flReHNRiA~~L~~~NP~W~DE~LFQEARrIviA~~QhIty~E~LP~iLG~~~~------~~~~L~~~------------ 867 (2042)
|+|||||||++|+++||+|+||+||||||+||+|+||||||+||||.|||.+.| .++||...
T Consensus 273 F~REHNrIad~L~~~nP~w~DE~LFQeAR~Iv~A~~q~I~~~EylP~iLg~~~~~~~~~~~w~gllg~~~~~~~g~~~~~ 352 (633)
T PLN02283 273 FVKEHNAVCDALKEEYPDFDDEELYRHARLVTSAVIAKIHTIDWTVELLKTDTLLAGMRANWYGLLGKKFKDTFGHIGGP 352 (633)
T ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHheeeeeeeccHHhcCCcccccccccccccccchhhhhhccccccc
Confidence 999999999999999999999999999999999999999999999999998876 33444311
Q ss_pred -CC---CCcCCCCCCCCCccHHHHHHHHHhhccccCCCCcchhh-ccccc--------------cccc-------CCCcc
Q psy12194 868 -PT---GYYKGYNDNCKPNIMTEFATAAYRIGHSLLRPFIPRLV-IARFR--------------RIYA-------SPDDV 921 (2042)
Q Consensus 868 -~~---g~~~gYd~~v~p~i~nEFatAAfRfgHSli~~~~~r~~-f~~p~--------------~l~~-------~~g~i 921 (2042)
.. ||...+++.++++|++||+ ||||| ||+||+.+.+.. +.++. .++. ...++
T Consensus 353 ~~~g~~gy~~~~~~~v~~~is~EF~-aaYR~-Hslip~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~l~~~Gl 430 (633)
T PLN02283 353 ILSGLVGLKKPNNHGVPYSLTEEFT-SVYRM-HSLLPDHLILRDITAAPGENKSPPLIEEIPMPELIGLKGEKKLSKIGF 430 (633)
T ss_pred ccccccCCCccccCCCCcchhHHHH-HHHhh-hhcCCCceecccccccccccccccccccccHHHHHhhcccccccccCH
Confidence 12 2333455678899999995 69997 999999876542 11110 0000 13467
Q ss_pred c-cccccccCcchhhccccccCChhhhhcCC----CC----ccchhHHHHHhhhcCC--CCccccccCCCCCCcHHHHHH
Q psy12194 922 D-LFPGGLSERPVAARLRRIYASPDDVDLFP----GG----LSEQPVAVIVRFRRIY--ASPDDVDLFPGGLSERPVAAR 990 (2042)
Q Consensus 922 d-llrGl~~~p~~~~d~~~l~~~~el~~~f~----~G----~~~DL~AlnIQRGRDH--~sf~dl~~~~~~~~~~~~~~~ 990 (2042)
+ +++|+..|++++.+. +.+|...+.+. .| .+.||+|+|||||||| ++|++++.+. +++. + +.
T Consensus 431 ~~ll~~l~~q~aga~~l---~n~p~~l~~l~~~~~~g~~~~~g~DLaal~IqRgRDhGlp~YNefR~~~-gL~~--~-~s 503 (633)
T PLN02283 431 EKLMVSMGHQACGALEL---WNYPSWMRDLVPQDIDGEDRPDHVDMAALEIYRDRERGVARYNEFRRNL-LMIP--I-SK 503 (633)
T ss_pred HHHHHHHhhcchhcccc---ccCcHHHHhhhhccccCCcccccccHHHHHHHhhhhcCCccHHHHHHHc-CCCC--C-CC
Confidence 7 999999999988753 46666433221 11 2349999999999999 7787766433 2222 0 11
Q ss_pred HHHhhCCCCccccccCcccCccccccccccccccccccccccccccccccC-CCCcchhhhccccccCCCCCCcChHHHH
Q psy12194 991 LRRIYASPDDVDLFPGGLSERPVAVGTLSFKLHCLKGYRTFEKKSCEKTHT-NIDNVDLLIGGLLENSEPGSALGITFSC 1069 (2042)
Q Consensus 991 L~~lY~~~~diDL~~G~l~E~p~~~~~~~~r~~~~~~~~~f~~~~~~~~y~-~vddIDL~vGGL~E~~~~G~~vGPTf~C 1069 (2042)
+.++-++ +. ....+..+|+ +||||||||||++|++++|+.+||||.|
T Consensus 504 Fedlt~d--------------~e------------------~~~~L~~lY~~~vddVDL~VG~laE~~v~G~~vG~T~~~ 551 (633)
T PLN02283 504 WEDLTDD--------------EE------------------AIEVLREVYGDDVEKLDLLVGLMAEKKIKGFAISETAFF 551 (633)
T ss_pred HHHcCCC--------------HH------------------HHHHHHHHhCCCHHHHHhhhhheecccCCCCCcCHHHHH
Confidence 2222110 00 0123456776 7888999999999999999999999999
Q ss_pred HHHHHHHHhhccCcceeecCCCCCCCCCC
Q psy12194 1070 LLARQFSVLKDSDRFWYENDFPPTSFSRG 1098 (2042)
Q Consensus 1070 II~~QF~rlR~GDRFwYEN~~~p~~FT~~ 1098 (2042)
|+..||.|+++||||||||. .|+.||++
T Consensus 552 i~~~~a~r~~~gDRF~~en~-np~~fT~~ 579 (633)
T PLN02283 552 IFLLMASRRLEADRFFTSNF-NEKTYTKK 579 (633)
T ss_pred HHHHHHHHHhcCCCCeEecC-CcCcCCHH
Confidence 99999999999999999995 48999999
No 4
>KOG2408|consensus
Probab=100.00 E-value=5.3e-74 Score=737.12 Aligned_cols=386 Identities=45% Similarity=0.740 Sum_probs=344.2
Q ss_pred CCCccccccCccCCCCCCCCCCCCccccCcccccccCCCcccccccCCCCCCChhhhhhhhccCc-ccCCcchhHHHHHH
Q psy12194 1489 TSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTPRVHSVSGAPLPTARLVSAMVHADI-SHLSNRYSLMVMQL 1567 (2042)
Q Consensus 1489 ~~~YRT~DGsCNNL~~P~wGaa~Tpf~RlLpp~Y~DGis~PR~~s~~G~~LPsaR~VS~~i~~d~-~~~~~~~T~mlmqf 1567 (2042)
+++|||+||+|||+++|.||+|+++|+|+|||.|+||+++||..+ .|.+||+||+||++|+.+. ..+|.++|+|+|||
T Consensus 148 ~~~yRt~dG~CNN~~~P~~Gas~~~~~Rllpp~Yedg~~~p~~~~-~~~~lP~~R~vS~~l~~~~~~~~~~~~~~~~mqw 226 (719)
T KOG2408|consen 148 HSKYRTIDGTCNNLRNPTLGASNSPFRRLLPPKYEDGFSTPRGWS-DGTPLPSARLVSNKLLSRSFSPPDSKFNHMAMQW 226 (719)
T ss_pred ccCccccccccCCCCCCCcccccChhhccCCccccccccCccccc-cCCCCCchHHhhHhhhccccCCCCcchhHHHHHH
Confidence 689999999999999999999999999999999999999999754 4599999999999999999 89999999999999
Q ss_pred HHHHhhccCCCCcccCCCCCCCCCCCCCCCCCCCCCccCccCCCCCCCCCCCCCCCCCCceecCccccCCCCC-------
Q psy12194 1568 AQTIDHDLTFTPVYRGFFTSIPDCRPCDSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRSLSGKKT------- 1640 (2042)
Q Consensus 1568 GQFIdHDlt~Tp~~~~~~~s~~~C~~C~~~~~~hp~CfPI~IP~dDP~y~~~n~~~g~~~Cm~F~RS~~~~~~------- 1640 (2042)
||||+|||+++|......+ ..+|..|++++..||+|+||+||++||+|... ..||+|+||.++|..
T Consensus 227 gQFi~HDl~~~~~~~~~~~-~~~~~~C~~~~~~~p~C~pi~~p~~dp~~~~~------~~C~~f~Rs~~~~~~~~~~~~r 299 (719)
T KOG2408|consen 227 GQFIDHDLYFTPLSTVQNG-ELNIRCCNKPQLPSPPCFPIKIPPNDPYFPSN------QRCLPFVRSLPACGSGYNLGPR 299 (719)
T ss_pred HHHhcccccccCCcccccC-CccccccCCCcCCCCcccceecCCCCCccCCc------ccceeceecCCCccccccCChh
Confidence 9999999999999887666 66788889999999999999999999999852 289999999998751
Q ss_pred ----------------C------------------------------------------C------CCccch--------
Q psy12194 1641 ----------------G------------------------------------------E------PSYYTY-------- 1648 (2042)
Q Consensus 1641 ----------------G------------------------------------------~------~~~~cf-------- 1648 (2042)
| | ....||
T Consensus 300 eQlNq~T~~lD~S~IYGss~~~~~~lR~f~~~~g~l~~~~~~~~~~~~~lP~~~~~~~~c~~~~~~~~~~cf~aGD~R~~ 379 (719)
T KOG2408|consen 300 EQLNQLTSFLDASVIYGSSDEDARKLRLFKDGKGLLRVDTGLFENGRPLLPFSTDPPNSCRSKPPGAPKPCFTAGDERAN 379 (719)
T ss_pred hhhccccccccchhccCCCHHHHHHHhcccCcccceeecccccccCcccCCCCCCCCccccccCCCCCCcccccCccccc
Confidence 1 0 013576
Q ss_pred --------hhhh---------------------------hhhhhhhc---------------------------------
Q psy12194 1649 --------HTLI---------------------------EGTVTAEV--------------------------------- 1660 (2042)
Q Consensus 1649 --------HT~f---------------------------e~iv~A~~--------------------------------- 1660 (2042)
||+| ++|++|++
T Consensus 380 ~~pgL~~~hti~lREHNRiA~~Lk~~np~W~dE~lfQeaRkI~~A~~q~Ity~e~LP~ilG~~~~~~~g~~~gY~~~~dp 459 (719)
T KOG2408|consen 380 EQPGLAALHTLFLREHNRIATELKALNPHWSDERLFQEARKIVGAQVQHITYNEYLPKLLGAPLKVSLGGYRGYDPNVDP 459 (719)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHhhhhHHhhhhhhcCcccccCCccccCcCCCCCh
Confidence 8888 34777765
Q ss_pred ------------------------------cCC--CccchhhhccCccccccCCCchhHhhhhcCCCcccC-CCcchhhh
Q psy12194 1661 ------------------------------LSD--GHVLLRDHFFNPDLIYKPNMIDEMMRGLAGTPMENL-DQFVTGEI 1707 (2042)
Q Consensus 1661 ------------------------------~~~--~~v~L~d~F~dps~ly~~~~id~ilrGl~~~~~~~~-d~f~~gdl 1707 (2042)
... ..+.+.+.|+++..+...+++|++++||++++++.. |.++++++
T Consensus 460 ~IsneFataAfRfgHsli~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~i~~~ggid~llrGl~~~~~~~~~d~~~~~~i 539 (719)
T KOG2408|consen 460 TISNEFATAAFRFGHSLIPPFFQRLDENFQPIGEVVNLPLHDAFFNPWLILNEGGIDPLLRGLTTQPAKMPDDQLLNGEI 539 (719)
T ss_pred hhhhhhhHHHHhhhcccCchhhhhhcccCcccccccCchhhhhhcchhhhhhccChhHHHHHHHhchhhcccchhcCHHH
Confidence 001 134556778888888888999999999999999988 89999999
Q ss_pred hhhhcccCCCCCCCCCchhhHHHHhhhcCCCCHHHHHHHcCCCCCCChhhhcccCChHHHHHHHHhhcCCCCcccccccc
Q psy12194 1708 TNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIARFRRIYASPDDVDLFPGGL 1787 (2042)
Q Consensus 1708 rn~LF~~~~r~~~glDLaALNIQRgRDHGlp~YNeyR~~cgL~~a~tF~dLn~~~d~EvI~~L~~iY~~vddIDLlpG~L 1787 (2042)
+++||...+.. ..+||+|||||||||||+++||+||++|||+++++|+||...+.++++++|+.+|++++|||||+|++
T Consensus 540 ~~~lf~~~~~~-~~~DL~ainIQRgRDhGlp~Yn~yR~~cgL~~~~s~edL~~~i~~~~~~kl~~lY~~~ddiDL~vG~~ 618 (719)
T KOG2408|consen 540 TERLFVKTDED-GELDLAALNIQRGRDHGLPPYNEYRKFCGLSPATSFEDLSDEIEPEIINKLRTLYGTPDDIDLYVGLL 618 (719)
T ss_pred HHHHhhhcCcc-cccchhhhhhhccccCCCCCHHHHHHHcCCCCCCCHHHhhhhhhHHHHHHHHHhcCCchhhccccccc
Confidence 99999987764 23999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHhhhcCcccccCCCCCCCCCHHHHHHHHHhhhHHHHHhhhHHHHHHhc-CCCcccch
Q psy12194 1788 SERPVAGGMVGPTFACIIGLQFRQLRKCDRFWYETDDPVIRFTEPQLQEIRKATLAKEIKKATLAKVICAN-MDYPGEIT 1866 (2042)
Q Consensus 1788 ~E~~~~Gg~vGPTf~ciI~~QF~rlr~gDRF~yEn~~~~~~FT~~qL~eIRk~~l~~~l~~~tLariic~n-~~i~~eVq 1866 (2042)
.|++++||++|||++|||++||+|+|.|||||||| ..+..||++||+||||+ ||++|||+| ..++.-++
T Consensus 619 ~E~~~~g~~vGPTl~cii~~Qf~r~r~gDRf~yen-~~~~~Ft~~QL~ei~k~---------sLariiC~N~~~~~~~~~ 688 (719)
T KOG2408|consen 619 LEKPLPGGLVGPTLACIIAEQFLRLRDGDRFWYEN-FNPGVFTPEQLEEIRKV---------SLARIICDNGTKITKVSR 688 (719)
T ss_pred ccccCCCceecccHHHHHHHHHHHHhccCceeecC-CCCCccCHHHHHHHHHh---------hchheeecCCcccccccc
Confidence 99999999999999999999999999999999999 55679999999999999 999999999 66665555
Q ss_pred hhhcccC---CCCCcccccCcccccccccc
Q psy12194 1867 NHLFEEK---GRPHSGVDLPALNIQRARDH 1893 (2042)
Q Consensus 1867 ~~lF~~~---n~~~~c~DLpSLNIQRwRDh 1893 (2042)
+++|..+ +..++|+++|.+|+..||+.
T Consensus 689 ~~~f~~~~~~~~~~~c~~ip~~dl~~w~~~ 718 (719)
T KOG2408|consen 689 FDVFDFPDAPNDPVPCSSIPGLDLNAWREQ 718 (719)
T ss_pred cCCccccccCCCCCCccccchhhhhhhhhc
Confidence 5999755 67788999999999999974
No 5
>PF03098 An_peroxidase: Animal haem peroxidase; InterPro: IPR002007 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. On the basis of sequence similarity, a number of animal haem peroxidases can be categorised as members of a superfamily: myeloperoxidase (MPO); eosinophil peroxidase (EPO); lactoperoxidase (LPO); thyroid peroxidase (TPO); prostaglandin H synthase (PGHS); and peroxidasin [, , ]. MPO plays a major role in the oxygen-dependent microbicidal system of neutrophils. EPO from eosinophilic granulocytes participates in immunological reactions, and potentiates tumor necrosis factor (TNF) production and hydrogen peroxide release by human monocyte-derived macrophages [, ]. In the main, MPO (and possibly EPO) utilises Cl-ions and H2O2 to form hypochlorous acid (HOCl), which can effectively kill bacteria or parasites. In secreted fluids, LPO catalyses the oxidation of thiocyanate ions (SCN-) by H2O2, producing the weak oxidising agent hypothiocyanite (OSCN-), which has bacteriostatic activity []. TPO uses I- ions and H2O2 to generate iodine, and plays a central role in the biosynthesis of thyroid hormones T(3) and T(4). To date, the 3D structures of MPO and PGHS have been reported. MPO is a homodimer: each monomer consists of a light (A or B) and a heavy (C or D) chain resulting from post-translational excision of 6 residues from the common precursor. Monomers are linked by a single inter-chain disulphide. Each monomer includes a bound calcium ion []. PGHS exists as a symmetric dimer, each monomer of which consists of 3 domains: an N-terminal epidermal growth factor (EGF) like module; a membrane-binding domain; and a large C-terminal catalytic domain containing the cyclooxygenase and the peroxidase active sites. The catalytic domain shows striking structural similarity to MPO. The cyclooxygenase active site, which catalyses the formation of prostaglandin G2 (PGG2) from arachidonic acid, resides at the apex of a long hydrophobic channel, extending from the membrane-binding domain to the centre of the molecule. The peroxidase active site, which catalyses the reduction of PGG2 to PGH2, is located on the other side of the molecule, at the haem binding site []. Both MPO and the catalytic domain of PGHS are mainly alpha-helical, 19 helices being identified as topologically and spatially equivalent; PGHS contains 5 additional N-terminal helices that have no equivalent in MPO. In both proteins, three Asn residues in each monomer are glycosylated.; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1FE2_A 1PGG_B 1PGF_A 3N8W_B 1IGZ_A 3KK6_B 3N8Z_A 1Q4G_A 1PTH_A 1EQH_A ....
Probab=100.00 E-value=1.1e-64 Score=646.38 Aligned_cols=345 Identities=46% Similarity=0.844 Sum_probs=270.5
Q ss_pred ccccccCccCCCCCCCCCCCCccccCcccccccCCCcccccccCCCCCCChhhhhhhhccCcc---cCCcchhHHHHHHH
Q psy12194 1492 FRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTPRVHSVSGAPLPTARLVSAMVHADIS---HLSNRYSLMVMQLA 1568 (2042)
Q Consensus 1492 YRT~DGsCNNL~~P~wGaa~Tpf~RlLpp~Y~DGis~PR~~s~~G~~LPsaR~VS~~i~~d~~---~~~~~~T~mlmqfG 1568 (2042)
|||+||+|||+.||.||+++|||.|+|||.|+||+++||. +++|.+||+||+||++|+.+.. ..++.+|+|+|+||
T Consensus 1 yRt~dG~cNN~~~p~~G~~~~~~~Rllp~~Y~dg~~~pr~-~~~g~~lP~pR~is~~l~~~~~~~~~~~~~~t~l~~~~g 79 (530)
T PF03098_consen 1 YRTYDGSCNNLANPSWGAAGTPFRRLLPPAYADGVSEPRG-SSNGSPLPNPREISNALFRRKDGFDPSHSGLTALFMQWG 79 (530)
T ss_dssp S--SSSTTSSSSSTTTT-SSEE-BESS-B--TTSSSBTTT-SBTTBS---HHHHHHHHTB-SSGTTBEEEEEEHHHHHHH
T ss_pred CCCCCCCccCCCcccccCCCCcccccCCcccccccccccc-ccCCccCCCHHHHHHHHhhcccccCCCCCcchHHHHHHH
Confidence 9999999999999999999999999999999999999996 7899999999999999999864 35678999999999
Q ss_pred HHHhhccCCCCcccCCCCCCCCCCCCCCCCCCCCCccCccCCCCCCCCCCCCCCCCCCceecCccccCCCCC--------
Q psy12194 1569 QTIDHDLTFTPVYRGFFTSIPDCRPCDSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRSLSGKKT-------- 1640 (2042)
Q Consensus 1569 QFIdHDlt~Tp~~~~~~~s~~~C~~C~~~~~~hp~CfPI~IP~dDP~y~~~n~~~g~~~Cm~F~RS~~~~~~-------- 1640 (2042)
|||+|||++++... . | ++ ||+|+||+||++||+|... .+||+|+||.+++.+
T Consensus 80 Qfi~HDi~~~~~~~-~------C--~~-----~~~c~~I~ip~~Dp~~~~~------~~c~~~~Rs~~~~~~~~~~~~~r 139 (530)
T PF03098_consen 80 QFIDHDITLTPDSS-S------C--SD-----HPECFPIPIPPDDPFYRPF------VRCMPFTRSAPAPDPGQSCSLPR 139 (530)
T ss_dssp HHHHHHH--BEBTT-T------H--HC-----BTTB--EE--TTEHHHHHT------TSEE--B-B-BSSTSSS-SSSST
T ss_pred HHHhhhhccccccc-c------c--cC-----CCCccccccCCCcccccCC------CCCcccccccccccCCCCCccch
Confidence 99999999988653 1 4 22 8999999999999999852 589999999887431
Q ss_pred ----------------C----------C-------CC------------------------ccch---------------
Q psy12194 1641 ----------------G----------E-------PS------------------------YYTY--------------- 1648 (2042)
Q Consensus 1641 ----------------G----------~-------~~------------------------~~cf--------------- 1648 (2042)
| . .. ..||
T Consensus 140 eq~N~~T~~lD~S~vYGs~~~~~~~LR~~~~~G~L~~~~~~~~~~~~~~~lp~~~~~~~~~~~~f~~GD~R~ne~~~l~~ 219 (530)
T PF03098_consen 140 EQINQATSYLDLSQVYGSSEEQARRLRSSFKGGKLKSDNGEFPPPNGGGLLPSDDPPTDSGCRCFLAGDPRVNENPGLTA 219 (530)
T ss_dssp TBEE-STSSSS-HHHH-SSHHHHHHTBESSTTTEB--ETSSEEBBTTBES--B-TSCSSGHHGSB-TSSTTTTSBHHHHH
T ss_pred hhhccccceeecccccCCCHHHHHHhhcchhhhhhhcccccccccCCCCCCCCCcccccccccccccccccccchHHHHH
Confidence 1 0 00 0244
Q ss_pred -hhhh---------------------------hhhhhhhc----------------------------------------
Q psy12194 1649 -HTLI---------------------------EGTVTAEV---------------------------------------- 1660 (2042)
Q Consensus 1649 -HT~f---------------------------e~iv~A~~---------------------------------------- 1660 (2042)
||+| ++||+|++
T Consensus 220 lhtlflReHNria~~L~~~np~w~de~lFqeAR~iv~a~~Q~Ivy~E~LP~llG~~~~~~~~~~~~~~g~~~~y~~~~~~ 299 (530)
T PF03098_consen 220 LHTLFLREHNRIADELKKINPHWDDERLFQEARRIVIAQYQHIVYNEYLPALLGPEAMNKFLLPPLNNGYYKGYDPSVDP 299 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHHHHHHHTTHHHHHGHGGHHHHS-G----GCGTTS-TTS--
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHhhhhHhhhhhhhcchhhhhhccccccccccccCCCCCCCC
Confidence 7777 23555554
Q ss_pred -----------------------c-------CCCccchhhhccCcc-ccccCCCchhHhhhhcCCCcccCC--Ccchhhh
Q psy12194 1661 -----------------------L-------SDGHVLLRDHFFNPD-LIYKPNMIDEMMRGLAGTPMENLD--QFVTGEI 1707 (2042)
Q Consensus 1661 -----------------------~-------~~~~v~L~d~F~dps-~ly~~~~id~ilrGl~~~~~~~~d--~f~~gdl 1707 (2042)
. ..+.+.|.+.|+++. .++.+++++.+++|++.++++..+ .+++.++
T Consensus 300 ~i~~EFa~aA~RfgHs~i~~~~~~~~~~~~~~~~~~~L~d~f~~~~~~~~~~~gid~ll~G~~~~~a~~~d~~~~~~~~l 379 (530)
T PF03098_consen 300 SISNEFAAAAYRFGHSMIPDTYDRWDENFEIPEPSLPLSDAFFNPSNRLLEEGGIDPLLRGLASQPAQKVDNPRFLVDDL 379 (530)
T ss_dssp S-BTTH-HHHGGGGGGGS-SEEEEBTTTSBETTSEEEGGGGBT-HH-HHHTTTCSHHHHHHHHHSEEEHHBTTBHSHHHH
T ss_pred chhHHHHHHHHHhhheeehhhhhhccccCCcccccccccccccCcchhhhhccchHHHHhHHhhCccccccHHHHhhhHh
Confidence 0 123457888999998 667788999999999999999999 9999999
Q ss_pred hhhhcccCCCCCCCCCchhhHHHHhhhcCCCCHHHHHHHcCCCCCCChhhhcccCChH-HHHHHHHhhcCCCCccccccc
Q psy12194 1708 TNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDE-VIARFRRIYASPDDVDLFPGG 1786 (2042)
Q Consensus 1708 rn~LF~~~~r~~~glDLaALNIQRgRDHGlp~YNeyR~~cgL~~a~tF~dLn~~~d~E-vI~~L~~iY~~vddIDLlpG~ 1786 (2042)
++++|+..+.+ ..+||+++|||||||||+|+||+||++|||+++++|+||.+.++++ ++++|+.+|++++|||||+|+
T Consensus 380 ~~~lf~~~~~~-~~~DL~a~nIqRGRdhGLp~yn~~R~~cgl~~~~sf~dl~~~~~~~~i~~~L~~~Y~~vddvDL~vG~ 458 (530)
T PF03098_consen 380 RNHLFGPRNVP-GSLDLAALNIQRGRDHGLPSYNDYREFCGLPPATSFEDLTDEISDEEIAAALRALYGHVDDVDLWVGG 458 (530)
T ss_dssp HTSEESTTSSS-EEEHHHHHHHHHHHHTTB-BHHHHHHHTT----SSHHHHHHHHTSHHHHHHHHHHHSSGGGSBHHHHH
T ss_pred hcccccccCCc-chhHHHHHHHHHHHHhCCchHHHHHHHhccCCCCCHHHhhhhhhHHHHHHHHHHhccchhccccccee
Confidence 99999876543 2259999999999999999999999999999999999998766644 559999999999999999999
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHhhhcCcccccCCCCCCCCCHHHHHHHHHhhhHHHHHhhhHHHHHHhcCCCcccch
Q psy12194 1787 LSERPVAGGMVGPTFACIIGLQFRQLRKCDRFWYETDDPVIRFTEPQLQEIRKATLAKEIKKATLAKVICANMDYPGEIT 1866 (2042)
Q Consensus 1787 L~E~~~~Gg~vGPTf~ciI~~QF~rlr~gDRF~yEn~~~~~~FT~~qL~eIRk~~l~~~l~~~tLariic~n~~i~~eVq 1866 (2042)
++|.+++|+.+|||++|||++||.+++.||||||||. ..||++|+++||++ ||+++||+|++..+.||
T Consensus 459 laE~~~~G~~lGpt~~~Ii~~qf~~l~~gDRf~yen~---~~ft~~ql~~i~~~---------tla~iic~n~~~~~~iq 526 (530)
T PF03098_consen 459 LAEKPVPGGLLGPTFSCIIAEQFSRLRRGDRFWYENP---GSFTPEQLEEIRKT---------TLARIICDNTDDITRIQ 526 (530)
T ss_dssp HHS-BSTTSSSBHHHHHHHHHHHHHHHHTSTTGTTSC---TTCTHHHHHHHTTT----------HHHHHHHHSTS-SEEE
T ss_pred eeeccccCCCCCHHHHhHHHHHHHHHHhcCcccccCc---CcCCHHHHHHHHHC---------CHHHHHHhcCCccccCC
Confidence 9999999999999999999999999999999999975 47999999999999 99999999997778999
Q ss_pred hhhc
Q psy12194 1867 NHLF 1870 (2042)
Q Consensus 1867 ~~lF 1870 (2042)
+++|
T Consensus 527 ~~~F 530 (530)
T PF03098_consen 527 PNAF 530 (530)
T ss_dssp SSTT
T ss_pred CCCC
Confidence 9998
No 6
>PLN02283 alpha-dioxygenase
Probab=100.00 E-value=1.8e-56 Score=568.89 Aligned_cols=370 Identities=15% Similarity=0.146 Sum_probs=278.9
Q ss_pred cccccccccCCccCCccccCccccCCCChHHHH-HhhccC-CC-CCCCcchHHHHHHHHHHhhc----------------
Q psy12194 41 QHVTYDEYLPVLIGEVACPSRNIIASPSGKEIS-HKIKTS-PQ-PHEYLSNFVGLWSQLIRDDL---------------- 101 (2042)
Q Consensus 41 ~~ity~r~lP~~~~~~~~p~~~~~~lP~~~~v~-~l~~~~-~~-~~~~~s~lf~~faQfi~HD~---------------- 101 (2042)
....|.|.+||.... .+..+|+|++|+ +++.+. .. .+.++|+|+++||||++|||
T Consensus 103 agt~f~R~v~p~~~~------~~~~~P~pr~vs~~ll~r~~f~~~~~~~n~~~~~w~Qf~~HD~~~~~~~~~~~~i~~p~ 176 (633)
T PLN02283 103 QGTFFGRNMPPVDQK------DKLLDPHPSVVATKLLARKKFIDTGKQFNMIAASWIQFMIHDWIDHLEDTQQIELTAPK 176 (633)
T ss_pred CCCccccCCCccccC------CCCCCCCHHHHHHHHHhhccccCCCCcchHHHHHHHHHHHhhhhhhcCccccccccCCc
Confidence 355788999987542 123369999999 555322 23 45678999999999999997
Q ss_pred -------------cCCCC-----C-CcccccccccCccccccccCCCchhh---cc-cCCCcce------------eecc
Q psy12194 102 -------------TSANT-----T-TAKKVVNQATGFLDGSKIYGSDSILS---RT-QYGAYLQ------------CVSC 146 (2042)
Q Consensus 102 -------------~~t~~-----~-~~~~~~N~~t~~lDls~iYG~~~~~~---R~-~dG~~~~------------~~~~ 146 (2042)
++|.. . .+++|+|..|||||+|+|||++++++ |+ ++||++. |++.
T Consensus 177 ~~~~~~~~~~~~f~RT~~~~~~~~~~~~~qiN~~Ts~lD~S~IYGss~~~~~~LRtf~~GkLk~~~~~~l~~~~~~~~~~ 256 (633)
T PLN02283 177 EVASQCPLKSFKFYKTKEVPTGSPDIKTGSLNIRTPWWDGSVIYGSNEKGLRRVRTFKDGKLKISEDGLLLHDEDGIPIS 256 (633)
T ss_pred ccccCCcccccccccCCCCCCCCCCCCccccccccceeecccccCCCHHHHHhhhCCCCCccCcCCCCCCCCCccCCccc
Confidence 44431 1 27899999999999999999999999 88 8898865 6788
Q ss_pred CC------hHHHHHHHHHHHhHHHHHHHHhhCCCCChhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCC---------
Q psy12194 147 NS------PSNLMYKLFELEHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIGECVNP--------- 211 (2042)
Q Consensus 147 Gd------~~~~l~tlflReHNrv~d~L~~~~p~w~DE~lFq~AR~ivia~~q~Iv~~dylp~ilg~~~~~--------- 211 (2042)
|| |+++|||||+|||||||++|+++||+|+||+||||||+||||+||||||+||||.|||.+.+.
T Consensus 257 Gd~rn~~pGL~~lhtLF~REHNrIad~L~~~nP~w~DE~LFQeAR~Iv~A~~q~I~~~EylP~iLg~~~~~~~~~~~w~g 336 (633)
T PLN02283 257 GDVRNSWAGVSLLQALFVKEHNAVCDALKEEYPDFDDEELYRHARLVTSAVIAKIHTIDWTVELLKTDTLLAGMRANWYG 336 (633)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHheeeeeeeccHHhcCCccccccccccccc
Confidence 88 999999999999999999999999999999999999999999999999999999999876531
Q ss_pred --------------------------CCCCCCchhHHHHHHhhhhhcccccccccccccccCC--C-----------CCC
Q psy12194 212 --------------------------DWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGECVN--P-----------DWS 252 (2042)
Q Consensus 212 --------------------------~~~~~~~ne~s~~~~~~~~~H~~v~~l~P~~~~~~~~--~-----------~f~ 252 (2042)
..++++++.++.||...||||++| |+.+..... . .+.
T Consensus 337 llg~~~~~~~g~~~~~~~~g~~gy~~~~~~~v~~~is~EF~aaYR~Hsli----p~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (633)
T PLN02283 337 LLGKKFKDTFGHIGGPILSGLVGLKKPNNHGVPYSLTEEFTSVYRMHSLL----PDHLILRDITAAPGENKSPPLIEEIP 412 (633)
T ss_pred ccchhhhhhcccccccccccccCCCccccCCCCcchhHHHHHHHhhhhcC----CCceeccccccccccccccccccccc
Confidence 012334444444444455556655 433221110 0 111
Q ss_pred ccchhh--hhhh-HHHHHHHHhhhhccCccc-cCccCCCccccccc-----c--cchhhHHHHHHHHHhhhcCCCccc--
Q psy12194 253 EGVLSE--EARS-IVIAQIQHVTYDEYLPVL-IGECVNPDWSEGVL-----S--EEARSIVIAQIQHVTYDEYLPVLI-- 319 (2042)
Q Consensus 253 ~~~~~~--~~~~-~~~g~~~~~~~~~~~~~~-~Gl~~~p~~~~~v~-----~--~~~~~dla~~~I~~gRd~gl~~yN-- 319 (2042)
...+.. .... ...|..++++.+..+++. .+++++|.+++.+. | +..++|||++.||||||||||+||
T Consensus 413 l~d~~~~~~~~~l~~~Gl~~ll~~l~~q~aga~~l~n~p~~l~~l~~~~~~g~~~~~g~DLaal~IqRgRDhGlp~YNef 492 (633)
T PLN02283 413 MPELIGLKGEKKLSKIGFEKLMVSMGHQACGALELWNYPSWMRDLVPQDIDGEDRPDHVDMAALEIYRDRERGVARYNEF 492 (633)
T ss_pred HHHHHhhcccccccccCHHHHHHHHhhcchhccccccCcHHHHhhhhccccCCcccccccHHHHHHHhhhhcCCccHHHH
Confidence 111110 0111 113455599999999887 89999999877552 2 336899999999999999999999
Q ss_pred -cccCCCC---CccCCCCHHHHHHHHHHhc-CCCccCcccccccCcCCccceeeccccchh----------hHHHHhhhh
Q psy12194 320 -GECVNPD---WSEGVLSEEARSIVIAQIQ-HVTYDEYLPVLIGECVNPDWSEGVLSEEAR----------SIVIAQIQH 384 (2042)
Q Consensus 320 -~~~gl~~---f~e~t~d~~~~~~L~~lY~-~id~~~~~~~~~~~~~~vel~vGll~E~~~----------~i~~~qf~~ 384 (2042)
++|||++ |+|+++|++++++|+++|+ ||| +||||||+++|++. ||+..||.+
T Consensus 493 R~~~gL~~~~sFedlt~d~e~~~~L~~lY~~~vd-------------dVDL~VG~laE~~v~G~~vG~T~~~i~~~~a~r 559 (633)
T PLN02283 493 RRNLLMIPISKWEDLTDDEEAIEVLREVYGDDVE-------------KLDLLVGLMAEKKIKGFAISETAFFIFLLMASR 559 (633)
T ss_pred HHHcCCCCCCCHHHcCCCHHHHHHHHHHhCCCHH-------------HHHhhhhheecccCCCCCcCHHHHHHHHHHHHH
Confidence 9999999 9999999999999999998 899 99999999999996 888777765
Q ss_pred ------ccccccCCccccccCCCCCChhhhhHhhhhhhhhhccccccCccCCcccCCccCc--ccc
Q psy12194 385 ------VTYDEYLPVLIGECVNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGECVNP--DWS 442 (2042)
Q Consensus 385 ------~~~~~~~~~~~~~~~~s~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 442 (2042)
|||||+.| +.||..||+||++-.....+=-+.|.+--+...+ |.|. .|.
T Consensus 560 ~~~gDRF~~en~np--------~~fT~~gl~~I~~t~tl~dvl~r~~p~~~~~~~~-~~~~f~~w~ 616 (633)
T PLN02283 560 RLEADRFFTSNFNE--------KTYTKKGLEWVNTTESLKDVIDRHYPEMTDKWMN-SSSAFSVWD 616 (633)
T ss_pred HhcCCCCeEecCCc--------CcCCHHHHHHHHccCcHHHHHHHhCcchhhhhhh-cccCCCcCC
Confidence 99999874 5799999999998432222222234333333345 7654 676
No 7
>smart00214 VWC von Willebrand factor (vWF) type C domain.
Probab=67.68 E-value=2.9 Score=39.09 Aligned_cols=38 Identities=21% Similarity=0.442 Sum_probs=32.2
Q ss_pred CCCCCceecccCccCCCCCccccccCCC-CCCcccccCc
Q psy12194 1281 CNIGGVQVSVGQSHLPSPCTSCICTSEG-PNHELLSDGH 1318 (2042)
Q Consensus 1281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 1318 (2042)
|.++|+....|++-.+.||++|+|.+.+ -.|..+.=+.
T Consensus 1 C~~~g~~y~~G~~W~~~~C~~C~C~~g~~v~C~~~~Cp~ 39 (59)
T smart00214 1 CVHNGEVYNDGETWKPDPCQICTCLDGETVLCDPVECPP 39 (59)
T ss_pred CccCCEEeCCCCEECCCCCeECCcCCCCEEEeeeecCCC
Confidence 6789999999999999999999999988 6677665443
No 8
>PF00093 VWC: von Willebrand factor type C domain; InterPro: IPR001007 The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. The domain is named after the von Willebrand factor (VWF) type C repeat which is found in multidomain protein/multifunctional proteins involved in maintaining homeostasis [, ]. For the von Willebrand factor the duplicated VWFC domain is thought to participate in oligomerization, but not in the initial dimerization step []. The presence of this region in a number of other complex-forming proteins points to the possible involvment of the VWFC domain in complex formation.; GO: 0005515 protein binding; PDB: 1U5M_A.
Probab=43.42 E-value=5.9 Score=36.77 Aligned_cols=36 Identities=28% Similarity=0.644 Sum_probs=23.9
Q ss_pred CCCCCceecccCccCCCCCccccccCCCCCCccccc
Q psy12194 1281 CNIGGVQVSVGQSHLPSPCTSCICTSEGPNHELLSD 1316 (2042)
Q Consensus 1281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1316 (2042)
|.++|+....|++-.+.+|+.|+|......|..+.=
T Consensus 1 C~~~g~~y~~g~~w~~~~C~~C~C~~G~v~C~~~~C 36 (57)
T PF00093_consen 1 CSFNGRVYQNGESWHPDPCTTCTCQDGEVQCSRIQC 36 (57)
T ss_dssp EESSS-EE-SS-EE-S-SSEEEEEETTEEEEEE---
T ss_pred CeeCCEEeCCCCEECCCCCcEeEecCCEEEEcCCCC
Confidence 678999999999999999999999995555665543
No 9
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=18.06 E-value=96 Score=29.38 Aligned_cols=16 Identities=38% Similarity=0.843 Sum_probs=14.2
Q ss_pred HhhCCCCChhHHHHHH
Q psy12194 169 AEVNPDWSEDVLFEEA 184 (2042)
Q Consensus 169 ~~~~p~w~DE~lFq~A 184 (2042)
-+.||+||-.+|||.|
T Consensus 18 ie~hP~WDQ~Rl~~aA 33 (57)
T PF10929_consen 18 IETHPNWDQYRLFQAA 33 (57)
T ss_pred HHcCCCchHHHHHHHH
Confidence 3579999999999998
No 10
>PF12714 TILa: TILa domain
Probab=13.76 E-value=1.2e+02 Score=28.50 Aligned_cols=27 Identities=33% Similarity=0.792 Sum_probs=22.7
Q ss_pred CCC-CCCceecccCccCCCCCc-cccccC
Q psy12194 1280 GCN-IGGVQVSVGQSHLPSPCT-SCICTS 1306 (2042)
Q Consensus 1280 ~~~-~~~~~~~~~~~~~~~~~~-~~~~~~ 1306 (2042)
||. .+|++.++|++-...-|+ .|+|.+
T Consensus 1 GC~d~~G~yy~~Ge~~~~~~C~~~C~C~~ 29 (56)
T PF12714_consen 1 GCTDYNGRYYPPGESWWTDDCTQRCTCQP 29 (56)
T ss_pred CCcCcCCEEECCCCEEeCCCCCEeEEEcC
Confidence 588 899999999997777776 699954
Done!