RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12194
(2042 letters)
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl
isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM
NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A*
2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A*
3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A*
3nyh_A* 3ql6_A* 3r4x_A* ...
Length = 595
Score = 328 bits (840), Expect = 1e-97
Identities = 156/568 (27%), Positives = 236/568 (41%), Gaps = 75/568 (13%)
Query: 564 PAEPCDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTP----RVHSVSGA 619
P CD SP+RTI+G CNN + G + +R LP+ YED ++ P + + +G
Sbjct: 11 PLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGF 70
Query: 620 PLPTARLVSAMVHADIS---HLSNRYSLMVMQLAQTIDHDLTFTPVYRGFFTSIPDCRPC 676
+P AR VS + + L SL+ MQ Q +DHDL F P ++ C
Sbjct: 71 RVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPE-TELGSNEHSKTQC 129
Query: 677 DSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRSL----SGQQGFGPREQINQN 732
+ C PI P DP + C+PF R+ + REQIN
Sbjct: 130 EEYCIQGDNCFPIMFPKNDPKLKTQGK------CMPFFRAGFVCPTPPYQSLAREQINAV 183
Query: 733 SAYLDGSLIYGEHACQAKDLRSYDG-----KLNVTLMPGRKDLLPNTPTHP-ECRSR--- 783
+++LD SL+YG A LR+ +N LP P C
Sbjct: 184 TSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEFINTT 243
Query: 784 ---YCFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQ 840
CF+AGD RASEQ L HT+L+REHNRLA +L ++NPHWN E+L+Q AR+I+
Sbjct: 244 ARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAF 303
Query: 841 WQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIGHSLLR 900
Q I + ++LP +LG Y+GYN++ P I F T A+R GH +
Sbjct: 304 IQIITFRDYLPIVLGSEMQKWI-------PPYQGYNNSVDPRISNVF-TFAFRFGHMEVP 355
Query: 901 PFIPRLVIARFRRIYASPDDVDLFPGGLSERPVAARLRRIYASPDDVDLFPGGLSEQPVA 960
+ RL + + ++ L + + +D GL +
Sbjct: 356 STVSRL--DENYQPWGPEAELPLHTLFFNTWRI--------IKDGGIDPLVRGLLAKKSK 405
Query: 961 VIVRFRRIYASPDDVDLFPGGLSERPVAARLRRIYASPDDVDLFPGGLSERPVAVGTL-S 1019
++ + + + ++ + + L I +L R + S
Sbjct: 406 LMNQDKMV---TSELRNKLFQPTHKIHGFDLAAI-------NLQRC----RDHGMPGYNS 451
Query: 1020 FKLHC-LKGYRTFE-----------KKSCEKTHTNIDNVDLLIGGLLENSEPGSALGITF 1067
++ C L +T + K + DN+D+ IGG E +G
Sbjct: 452 WRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLL 511
Query: 1068 SCLLARQFSVLKDSDRFWYENDFPPTSF 1095
+CLL RQF ++D DRFW+EN T
Sbjct: 512 ACLLGRQFQQIRDGDRFWWENPGVFTEK 539
Score = 192 bits (487), Expect = 2e-51
Identities = 82/251 (32%), Positives = 127/251 (50%), Gaps = 26/251 (10%)
Query: 1648 YHTLIEGTVT------AEVLSDGHVLLRDHFFNPDLIYKPNMIDEMMRGLAGTPME--NL 1699
H + TV+ + + L FFN I K ID ++RGL + N
Sbjct: 350 GHMEVPSTVSRLDENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQ 409
Query: 1700 DQFVTGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTWADLS 1759
D+ VT E+ N LF+ + H G DL A+N+QR RDHG+P YN +R C L + KT L
Sbjct: 410 DKMVTSELRNKLFQPTHKIH-GFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQ 468
Query: 1760 REIPDEVIA-RFRRIYASPDDVDLFPGGLSERPVAGGMVGPTFACIIGLQFRQLRKCDRF 1818
+ ++++A + +Y +PD++D++ GG +E V G VGP AC++G QF+Q+R DRF
Sbjct: 469 TVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRF 528
Query: 1819 WYETDDPVIRFTEPQLQEIRKATLAKEIKKATLAKVICANMDYPGEITNHLFEEKGRPHS 1878
W+E FTE Q ++ K + +++IC N ++ H F+ PH
Sbjct: 529 WWENPGV---FTEKQRDSLQ---------KVSFSRLICDNTH-ITKVPLHAFQANNYPHD 575
Query: 1879 GV---DLPALN 1886
V + L+
Sbjct: 576 FVDCSTVDKLD 586
Score = 130 bits (328), Expect = 4e-31
Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 4/138 (2%)
Query: 1311 HELLSDGHVLLRDHFFNPDLIYKPNMIDEMMRGLAGTPME--NLDQFVTGEITNHLFEEK 1368
+ + L FFN I K ID ++RGL + N D+ VT E+ N LF+
Sbjct: 366 QPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPT 425
Query: 1369 GRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIA-RFRRIY 1427
+ H G DL A+N+QR RDHG+P YN +R C L + KT L + ++++A + +Y
Sbjct: 426 HKIH-GFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLY 484
Query: 1428 ASPDDVDLFPGGLSERPV 1445
+PD++D++ GG +E V
Sbjct: 485 KTPDNIDIWIGGNAEPMV 502
Score = 129 bits (324), Expect = 1e-30
Identities = 50/167 (29%), Positives = 72/167 (43%), Gaps = 14/167 (8%)
Query: 1482 PAEPCDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTP----RVHSVSGA 1537
P CD SP+RTI+G CNN + G + +R LP+ YED ++ P + + +G
Sbjct: 11 PLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGF 70
Query: 1538 PLPTARLVSAMVHADIS---HLSNRYSLMVMQLAQTIDHDLTFTPVYRGFFTSIPDCRPC 1594
+P AR VS + + L SL+ MQ Q +DHDL F P ++ C
Sbjct: 71 RVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPE-TELGSNEHSKTQC 129
Query: 1595 DSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRSLSGKKTG 1641
+ C PI P DP + C+PF R+ T
Sbjct: 130 EEYCIQGDNCFPIMFPKNDPKLKTQGK------CMPFFRAGFVCPTP 170
Score = 100 bits (250), Expect = 1e-21
Identities = 36/103 (34%), Positives = 61/103 (59%), Gaps = 2/103 (1%)
Query: 1849 ATLAKVICANMDYPGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLK 1908
A +K++ + E+ N LF+ + H G DL A+N+QR RDHG+P YN +R C L
Sbjct: 401 AKKSKLMNQDKMVTSELRNKLFQPTHKIH-GFDLAAINLQRCRDHGMPGYNSWRGFCGLS 459
Query: 1909 KAKTWADLSREIPDEVIA-RFRRIYASPDDVDLFPGGLSERPV 1950
+ KT L + ++++A + +Y +PD++D++ GG +E V
Sbjct: 460 QPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMV 502
Score = 77.7 bits (190), Expect = 2e-14
Identities = 51/253 (20%), Positives = 90/253 (35%), Gaps = 51/253 (20%)
Query: 5 FELEHNRLVTELAEVNPDWSEDVLFEEARSIVIAQ-IQHVTYDEYLPVLIGEVACPSRNI 63
F + R V+ ++ E+ + ++ RS++ Q Q V +D +
Sbjct: 70 FRVPLAREVSN--KIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETELGSNEHSKT 127
Query: 64 IASPSGKEISHKIKTSPQPHEYLSNFVGLWSQLIR---DDLTSANTTTAKKVVNQATGFL 120
+ + ++ G R T + A++ +N T FL
Sbjct: 128 QCEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSLAREQINAVTSFL 187
Query: 121 DGSKIYGSDSILS---RTQYGAYLQ------------------------CVSCNSPSN-- 151
D S +YGS+ L+ R C N+ +
Sbjct: 188 DASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEFINTTARVP 247
Query: 152 ----------------LMYKLFELEHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHV 195
+ L EHNRL EL ++NP W+ + L++EAR I+ A IQ +
Sbjct: 248 CFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQII 307
Query: 196 TYDEYLPVLIGEC 208
T+ +YLP+++G
Sbjct: 308 TFRDYLPIVLGSE 320
Score = 74.6 bits (182), Expect = 2e-13
Identities = 24/55 (43%), Positives = 38/55 (69%)
Query: 1 MYKLFELEHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIGE 55
+ L EHNRL EL ++NP W+ + L++EAR I+ A IQ +T+ +YLP+++G
Sbjct: 265 AHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGS 319
Score = 46.9 bits (110), Expect = 6e-05
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 437 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGEN 474
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSE 320
Score = 46.5 bits (109), Expect = 9e-05
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 247 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGEC 284
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSE 320
Score = 46.5 bits (109), Expect = 9e-05
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 285 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGEC 322
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSE 320
Score = 46.5 bits (109), Expect = 9e-05
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 323 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGEC 360
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSE 320
Score = 46.5 bits (109), Expect = 9e-05
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 361 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGEC 398
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSE 320
Score = 46.5 bits (109), Expect = 9e-05
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 399 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGEC 436
+NP W+ L +EAR I+ A IQ +T+ +YLP+++G
Sbjct: 283 LNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSE 320
Score = 39.2 bits (90), Expect = 0.015
Identities = 5/41 (12%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 1237 CTNEK-GTMQQNVLEMPNDFTNLRVPCNALPEININMWKQN 1276
C N + + + ++ + V C+ + +++++ W
Sbjct: 554 CDNTHITKVPLHAFQAN-NYPHDFVDCSTVDKLDLSPWASR 593
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide;
HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP:
a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C*
1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Length = 466
Score = 267 bits (682), Expect = 3e-78
Identities = 120/446 (26%), Positives = 193/446 (43%), Gaps = 67/446 (15%)
Query: 676 CDSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRSL--SGQQGFGPREQINQNS 733
C++ P C P+ IP DP C+PF RS R QIN +
Sbjct: 3 CETSCVQQPPCFPLKIPPNDPRIKNQAD------CIPFFRSCPACPGSNITIRNQINALT 56
Query: 734 AYLDGSLIYGEHACQAKDLRSYDG-----KLNVTLMPGRKDLLPNTPTHP-ECRSR---- 783
+++D S++YG A++LR+ +N + LLP H C
Sbjct: 57 SFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSA 116
Query: 784 --YCFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQW 841
CF+AGD R+SE P LT+MHT+L+REHNRLA +L +NP W+ E+L+Q AR+I+
Sbjct: 117 RIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMV 176
Query: 842 QHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIGHSLLRP 901
Q I Y ++LP +LG A+ Y Y+ YND+ P I F T A+R GH+L++P
Sbjct: 177 QIITYRDYLPLVLGPTAMRKYL------PTYRSYNDSVDPRIANVF-TNAFRYGHTLIQP 229
Query: 902 FIPRLVIARFRRIYASPDDVDLFPGGLSERPVAARLRRIYASPDDVDLFPGGLSEQPVAV 961
F+ RL R++ + +P + V R+ +D GL P +
Sbjct: 230 FMFRLD-NRYQPMEPNPR--------VPLSRVFFASWRVV-LEGGIDPILRGLMATPAKL 279
Query: 962 IVRFRRIYASPDDVDLFPGGLSERPVAARLRRIYASPDDVDLFPGGLSE-RPVAVGTL-S 1019
+ + D++ +DL + R + +
Sbjct: 280 NRQNQIAV---DEIRERLFEQVM-------------RIGLDLPALNMQRSRDHGLPGYNA 323
Query: 1020 FKLHC-LKGYRTFE-----------KKSCEKTHTNIDNVDLLIGGLLENSEPGSALGITF 1067
++ C L T + + + +N+D+ +GG+ E + +G
Sbjct: 324 WRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLL 383
Query: 1068 SCLLARQFSVLKDSDRFWYENDFPPT 1093
+C++ QF L+D DRFW+EN+ +
Sbjct: 384 ACIIGTQFRKLRDGDRFWWENEGVFS 409
Score = 194 bits (494), Expect = 2e-53
Identities = 87/296 (29%), Positives = 134/296 (45%), Gaps = 36/296 (12%)
Query: 1604 CMPIPIPAGDPYFPQYNRTTGRPLCLPFMRSLSGKKTGEPSYYTYHTLIEGTVTA----- 1658
P + P + YN + + F ++ HTLI+ +
Sbjct: 189 LGPTAMRKYLPTYRSYNDSVDPRIANVF----------TNAFRYGHTLIQPFMFRLDNRY 238
Query: 1659 -EVLSDGHVLLRDHFFNPDLIYKPNMIDEMMRGLAGTP--MENLDQFVTGEITNHLFEEK 1715
+ + V L FF + ID ++RGL TP + +Q EI LFE+
Sbjct: 239 QPMEPNPRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQV 298
Query: 1716 GRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPD-EVIARFRRIY 1774
R G+DLPALN+QR+RDHG+P YN +R C L + +T L + + ++ + Y
Sbjct: 299 MR--IGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQY 356
Query: 1775 ASPDDVDLFPGGLSERPVAGGMVGPTFACIIGLQFRQLRKCDRFWYETDDPVIRFTEPQL 1834
+P+++D++ GG+SE G VGP ACIIG QFR+LR DRFW+E +
Sbjct: 357 GTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENEGVF-------- 408
Query: 1835 QEIRKATLAKEIKKATLAKVICANMDYPGEITNHLFEEKGRPHSGV---DLPALNI 1887
+ + + +L ++IC N N++F P V LPALN+
Sbjct: 409 ----SMQQRQALAQISLPRIICDNTGITTVSKNNIFMSNSYPRDFVNCSTLPALNL 460
Score = 130 bits (328), Expect = 8e-32
Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 5/138 (3%)
Query: 1311 HELLSDGHVLLRDHFFNPDLIYKPNMIDEMMRGLAGTP--MENLDQFVTGEITNHLFEEK 1368
+ + V L FF + ID ++RGL TP + +Q EI LFE+
Sbjct: 239 QPMEPNPRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQV 298
Query: 1369 GRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPD-EVIARFRRIY 1427
R G+DLPALN+QR+RDHG+P YN +R C L + +T L + + ++ + Y
Sbjct: 299 MR--IGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQY 356
Query: 1428 ASPDDVDLFPGGLSERPV 1445
+P+++D++ GG+SE
Sbjct: 357 GTPNNIDIWMGGVSEPLK 374
Score = 122 bits (307), Expect = 4e-29
Identities = 79/397 (19%), Positives = 127/397 (31%), Gaps = 61/397 (15%)
Query: 1594 CDSRITVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRSLSGKKTGEPSYYTY----- 1648
C++ P C P+ IP DP C+PF RS +
Sbjct: 3 CETSCVQQPPCFPLKIPPNDPRIKNQAD------CIPFFRSCPACPGSNITIRNQINALT 56
Query: 1649 HTLIEGTV-----------------------TAEVLSDGHVLLRDHFFNPDLIYKPNMID 1685
+ V +G LL + D N
Sbjct: 57 SFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSA 116
Query: 1686 EMMRGLAGTPMENLDQFVTGEIT------NHLFEEKGRPHSGVDLPALNIQRARDHGVPS 1739
+ LAG + +T T N L E + D L Q AR
Sbjct: 117 RIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERL-YQEAR------ 169
Query: 1740 YNEYRALCNLKKAKTWADLSREIPDEVIARFRRIYASPDDVDLFPGGLSERPVAGGMVGP 1799
+ + + + T+ D + R + + P + A
Sbjct: 170 ----KIVGAMVQIITYRDYLPLVLGPTAMRKYLPTYRSYNDSVDPRIANVFTNAFRY--- 222
Query: 1800 TFACIIGLQFRQLRKCDRFWYETDDPVIRFTEPQLQEIRKATLAKEIKK---ATLAKVIC 1856
+I +L + + + I + AT AK+
Sbjct: 223 -GHTLIQPFMFRLDNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNR 281
Query: 1857 ANMDYPGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTWADL 1916
N EI LFE+ R G+DLPALN+QR+RDHG+P YN +R C L + +T L
Sbjct: 282 QNQIAVDEIRERLFEQVMR--IGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQL 339
Query: 1917 SREIPD-EVIARFRRIYASPDDVDLFPGGLSERPVAD 1952
+ + ++ + Y +P+++D++ GG+SE
Sbjct: 340 GTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRK 376
Score = 78.7 bits (193), Expect = 6e-15
Identities = 38/146 (26%), Positives = 56/146 (38%), Gaps = 45/146 (30%)
Query: 113 VNQATGFLDGSKIYGSDSILS---RTQYGAYL---------------------QCVSCNS 148
+N T F+D S +YGS+ L+ R C
Sbjct: 52 INALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLL 111
Query: 149 PSN---------------------LMYKLFELEHNRLVTELAEVNPDWSEDVLFEEARSI 187
+ M+ L EHNRL TEL +NP W + L++EAR I
Sbjct: 112 TNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKI 171
Query: 188 VIAQIQHVTYDEYLPVLIGECVNPDW 213
V A +Q +TY +YLP+++G +
Sbjct: 172 VGAMVQIITYRDYLPLVLGPTAMRKY 197
Score = 71.8 bits (175), Expect = 1e-12
Identities = 28/60 (46%), Positives = 39/60 (65%)
Query: 1 MYKLFELEHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIGEVACPS 60
M+ L EHNRL TEL +NP W + L++EAR IV A +Q +TY +YLP+++G A
Sbjct: 137 MHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRK 196
Score = 49.1 bits (116), Expect = 1e-05
Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 5/119 (4%)
Query: 437 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGENVDVDDLLESVNLILQEQSEKPN 496
+NP W L +EAR IV A +Q +TY +YLP+++G L + ++ +
Sbjct: 155 LNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKYLPT-----YRSYNDSVD 209
Query: 497 ISPDQMMRRLARWSPIQIPTTRNVGELDEQIDRRVTESAGSQIFNFIDDLNKAGFLPPI 555
+ R+ I + Q S++F + G + PI
Sbjct: 210 PRIANVFTNAFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPI 268
Score = 45.6 bits (107), Expect = 1e-04
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 247 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGECVNPDW 289
+NP W L +EAR IV A +Q +TY +YLP+++G +
Sbjct: 155 LNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKY 197
Score = 45.6 bits (107), Expect = 1e-04
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 285 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGECVNPDW 327
+NP W L +EAR IV A +Q +TY +YLP+++G +
Sbjct: 155 LNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKY 197
Score = 45.6 bits (107), Expect = 1e-04
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 323 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGECVNPDW 365
+NP W L +EAR IV A +Q +TY +YLP+++G +
Sbjct: 155 LNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKY 197
Score = 45.6 bits (107), Expect = 1e-04
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 361 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGECVNPDW 403
+NP W L +EAR IV A +Q +TY +YLP+++G +
Sbjct: 155 LNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKY 197
Score = 45.6 bits (107), Expect = 1e-04
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 399 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGECVNPDW 441
+NP W L +EAR IV A +Q +TY +YLP+++G +
Sbjct: 155 LNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKY 197
Score = 37.9 bits (87), Expect = 0.037
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 1237 CTN-EKGTMQQNVLEMPNDFTNLRVPCNALPEININMWKQ 1275
C N T+ +N + M N + V C+ LP +N+ W++
Sbjct: 426 CDNTGITTVSKNNIFMSNSYPRDFVNCSTLPALNLASWRE 465
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A*
3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A*
3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A*
3hs7_A* 3krk_A* ...
Length = 587
Score = 251 bits (643), Expect = 8e-72
Identities = 93/558 (16%), Positives = 147/558 (26%), Gaps = 151/558 (27%)
Query: 561 PSCPAEPCDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTPRVHSVSGAP 620
S P + +++ N ++ ++R LP V +D TP
Sbjct: 94 DSPP--TYNVHYGYKSWEAFSN----------LSYYTRALPPVADD-CPTPM-GVKGNKE 139
Query: 621 LPTARLVSAMVHADISHLSNRYSLMVMQLAQTIDHDLTFTPVYRGFFTSIPDCRPCDSRI 680
LP ++ V V + P
Sbjct: 140 LPDSKEVLEKVLLR------------------------------------REFIPDPQGS 163
Query: 681 TVHPECMPIPIPAGDPYFPQYNRTTGRPLCLPFMRSLSGQQGFGPREQINQNSAYLDGSL 740
+ +F Q+ F +D +
Sbjct: 164 NMMF-----------AFFAQH-----------FTHQFFKTDHKRGPGFTRGLGHGVDLNH 201
Query: 741 IYGEHACQAKDLRSY-DGKLNVT------LMPGRKDLLPNTPTHPECRSRYCFVAGDGRA 793
IYGE + LR + DGKL P KD P F G
Sbjct: 202 IYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAVGQEVF 261
Query: 794 SEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNEFLPRL 853
PGL TI +REHNR+ + L Q +P W DEQLFQ +R I++G+ IV +++ L
Sbjct: 262 GLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHL 321
Query: 854 LGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIGHSLLRPFIPRLVIARFRR 913
G + + +N + H LL +
Sbjct: 322 SGYHFKLKFDP-------ELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQEYSFK 374
Query: 914 IYASPDDVDLFPGGLSERPVAARLRRIYASP----DDVDLFPGGLSEQPVAVIVRFR--- 966
+ L E + + P + A I + R
Sbjct: 375 QFLYN------NSILLEHGLTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMK 428
Query: 967 -------RIYASPDDVDLFPGGLSERPVAARLRRIYASPDDVDLFPGGLSERPVAVGTLS 1019
R S F E+ +AA L+ +Y+ D ++L+P L E+P
Sbjct: 429 YQSLNEYRKRFSLKPYTSFEELTGEKEMAAELKALYSDIDVMELYPALLVEKPR------ 482
Query: 1020 FKLHCLKGYRTFEKKSCEKTHTNIDNVDLLIGGLLENSEPGSALGITFSCLLARQFSVLK 1079
P + G T L A
Sbjct: 483 ---------------------------------------PDAIFGETMVELGAPFSLKGL 503
Query: 1080 DSDRFWYENDFPPTSFSR 1097
+ + P++F
Sbjct: 504 MGNPICSPQYWKPSTFGG 521
Score = 196 bits (499), Expect = 6e-53
Identities = 38/238 (15%), Positives = 87/238 (36%), Gaps = 28/238 (11%)
Query: 1645 YYTYHTLIEGTVTAEVLSDGHVLLRDHFFNPDLIYKPNMIDEMMRGLAGTPMENLDQFVT 1704
Y +H L+ T + D + +N ++ + + + T
Sbjct: 353 LYHWHPLLPDTFN---IEDQEYSFKQFLYNNSILLEHGL-------------TQFVESFT 396
Query: 1705 GEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPD 1764
+I + + P + + +I ++R+ S NEYR +LK ++ +L+ E
Sbjct: 397 RQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTGE--K 454
Query: 1765 EVIARFRRIYASPDDVDLFPGGLSERPVAGGMVGPTFACIIGLQFRQLRKCDRFWYET-D 1823
E+ A + +Y+ D ++L+P L E+P + G T + + +
Sbjct: 455 EMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYW 514
Query: 1824 DPVIRFTEPQLQEIRKATLAKEIKKATLAKVICANMDYPGEITNHLFEEKGRPHSGVD 1881
P E + I A++ +IC N+ + ++ + + + ++
Sbjct: 515 KPSTFGGEVGFKIIN---------TASIQSLICNNVKGCPFTSFNVQDPQPTKTATIN 563
Score = 119 bits (300), Expect = 1e-27
Identities = 26/137 (18%), Positives = 57/137 (41%), Gaps = 15/137 (10%)
Query: 1309 PNHELLSDGHVLLRDHFFNPDLIYKPNMIDEMMRGLAGTPMENLDQFVTGEITNHLFEEK 1368
P+ + D + +N ++ + + + T +I + +
Sbjct: 361 PDTFNIEDQEYSFKQFLYNNSILLEHGL-------------TQFVESFTRQIAGRVAGGR 407
Query: 1369 GRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIARFRRIYA 1428
P + + +I ++R+ S NEYR +LK ++ +L+ E E+ A + +Y+
Sbjct: 408 NVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTGE--KEMAAELKALYS 465
Query: 1429 SPDDVDLFPGGLSERPV 1445
D ++L+P L E+P
Sbjct: 466 DIDVMELYPALLVEKPR 482
Score = 108 bits (271), Expect = 4e-24
Identities = 25/138 (18%), Positives = 56/138 (40%), Gaps = 5/138 (3%)
Query: 1815 CDRFWYETDDPVIRFTEPQLQEIRKATLAKEIKKATLAKVICANMDYPGEITNHLFEEKG 1874
W+ + + + + + L + + + +I + +
Sbjct: 352 TLYHWHPLLPDTFNIEDQEYSFKQFLYNNSILLEHGLTQFV---ESFTRQIAGRVAGGRN 408
Query: 1875 RPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIARFRRIYAS 1934
P + + +I ++R+ S NEYR +LK ++ +L+ E E+ A + +Y+
Sbjct: 409 VPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTGE--KEMAAELKALYSD 466
Query: 1935 PDDVDLFPGGLSERPVAD 1952
D ++L+P L E+P D
Sbjct: 467 IDVMELYPALLVEKPRPD 484
Score = 91.3 bits (226), Expect = 1e-18
Identities = 28/184 (15%), Positives = 57/184 (30%), Gaps = 43/184 (23%)
Query: 67 PSGKEISHKI---KTSPQPHEYLSNFVGLWSQLIRDDLTSANTTTAKKVVNQATGFLDGS 123
P KE+ K+ + + + ++Q + +D +
Sbjct: 141 PDSKEVLEKVLLRREFIPDPQGSNMMFAFFAQHFTHQFFKTDHKRGPGFTRGLGHGVDLN 200
Query: 124 KIYGSD---SILSRTQYGAYLQC----------------VSCNSPSN------------- 151
IYG R L+ V P +
Sbjct: 201 HIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAVGQEV 260
Query: 152 --------LMYKLFELEHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPV 203
+ ++ EHNR+ L + +P+W ++ LF+ +R I+I + + ++Y+
Sbjct: 261 FGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQH 320
Query: 204 LIGE 207
L G
Sbjct: 321 LSGY 324
Score = 74.8 bits (183), Expect = 2e-13
Identities = 15/55 (27%), Positives = 31/55 (56%)
Query: 1 MYKLFELEHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIGE 55
++ EHNR+ L + +P+W ++ LF+ +R I+I + + ++Y+ L G
Sbjct: 270 YATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGY 324
Score = 56.3 bits (135), Expect = 9e-08
Identities = 25/128 (19%), Positives = 41/128 (32%), Gaps = 17/128 (13%)
Query: 1458 LDFIDDLNKAGFLPPIRLQNEPSCPAEPCDPTSPFRTISGRCNNLVNTEHGRSMTTFSRL 1517
+ F+ L L R S P + +++ N ++ ++R
Sbjct: 74 IPFLRSLIMKYVLT-SRSYLIDSPP--TYNVHYGYKSWEAFSN----------LSYYTRA 120
Query: 1518 LPSVYEDLISTPRVHSVSGAPLPTARLVSAMVHADISHL--SNRYSLMVMQLAQTIDHDL 1575
LP V +D TP LP ++ V V + ++M AQ H
Sbjct: 121 LPPVADD-CPTPM-GVKGNKELPDSKEVLEKVLLRREFIPDPQGSNMMFAFFAQHFTHQF 178
Query: 1576 TFTPVYRG 1583
T RG
Sbjct: 179 FKTDHKRG 186
Score = 49.0 bits (116), Expect = 2e-05
Identities = 20/122 (16%), Positives = 43/122 (35%)
Query: 399 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGECVNPDWSEGVLSEEARSIVIAQI 458
+P+W + L + +R I+I + + ++Y+ L G + +L +
Sbjct: 288 EHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHFKLKFDPELLFNQQFQYQNRIA 347
Query: 459 QHVTYDEYLPVLIGENVDVDDLLESVNLILQEQSEKPNISPDQMMRRLARWSPIQIPTTR 518
+ L+ + +++D S L S Q + R ++ R
Sbjct: 348 SEFNTLYHWHPLLPDTFNIEDQEYSFKQFLYNNSILLEHGLTQFVESFTRQIAGRVAGGR 407
Query: 519 NV 520
NV
Sbjct: 408 NV 409
Score = 47.0 bits (111), Expect = 6e-05
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 247 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGE 283
+P+W + L + +R I+I + + ++Y+ L G
Sbjct: 288 EHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGY 324
Score = 47.0 bits (111), Expect = 6e-05
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 285 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGE 321
+P+W + L + +R I+I + + ++Y+ L G
Sbjct: 288 EHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGY 324
Score = 47.0 bits (111), Expect = 6e-05
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 323 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGE 359
+P+W + L + +R I+I + + ++Y+ L G
Sbjct: 288 EHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGY 324
Score = 47.0 bits (111), Expect = 6e-05
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 361 VNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGE 397
+P+W + L + +R I+I + + ++Y+ L G
Sbjct: 288 EHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGY 324
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A*
3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P*
2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A*
1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 246 bits (629), Expect = 3e-70
Identities = 98/552 (17%), Positives = 154/552 (27%), Gaps = 147/552 (26%)
Query: 569 DPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTPRVHSVSGAPLPTARLVS 628
SP ++ ++ E +++ ++R+LPSV D + LP A +S
Sbjct: 92 LIPSPPTYNI--AHDYISWESFSNVSYYTRILPSVPRDCPTPMGTKGK--KQLPDAEFLS 147
Query: 629 AMVHADISHL--SNRYSLMVMQLAQTIDHDLTFTPVYRGFFTSIPDCRPCDSRITVHPEC 686
+ +LM AQ H FF
Sbjct: 148 RRFLLRRKFIPDPQGTNLMFAFFAQHFTHQ---------FF------------------- 179
Query: 687 MPIPIPAGDPYFPQYNRTTGRPLCLPFMRSLSGQQGFGPREQINQNSAYLDGSLIYGEHA 746
+T+G+ +D IYG++
Sbjct: 180 ----------------KTSGKM----------------GPGFTKALGHGVDLGHIYGDNL 207
Query: 747 CQAKDLRSY-DGKLNVTLMPGRKDLLPNTPTHPECRSR-------YCFVAGDGRASEQPG 798
+ LR + DGKL ++ G P+ P G PG
Sbjct: 208 ERQYQLRLFKDGKLKYQMLNGE-VYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLLPG 266
Query: 799 LTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNEFLPRLLGLNA 858
L TI +REHNR+ + L +P W DEQLFQ AR I++G+ IV E++ +L G
Sbjct: 267 LMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFL 326
Query: 859 VNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIGHSLLRPFIPRLVIARFRRIYASP 918
+ +L G + I EF H L+ R S
Sbjct: 327 QLKFDPEL-----LFGAQFQYRNRIAMEFNQ--LYHWHPLMPDSF------RVGPQDYSY 373
Query: 919 DDVDLFPGGLSERPVAARLRRIYASP----DDVDLFPGGLSEQPVAVIVRFR-------- 966
+ L + V A + P + V VI R
Sbjct: 374 EQFLFNTSMLVDYGVEALVDAFSRQPAGRIGGGRNIDHHILHVAVDVIKESRVLRLQPFN 433
Query: 967 --RIYASPDDVDLFPGGLSERPVAARLRRIYASPDDVDLFPGGLSERPVAVGTLSFKLHC 1024
R F E+ +AA L +Y D ++ +PG L E+
Sbjct: 434 EYRKRFGMKPYTSFQELTGEKEMAAELEELYGDIDALEFYPGLLLEKCH----------- 482
Query: 1025 LKGYRTFEKKSCEKTHTNIDNVDLLIGGLLENSEPGSALGITFSCLLARQFSVLKDSDRF 1084
P S G + + A +
Sbjct: 483 ----------------------------------PNSIFGESMIEMGAPFSLKGLLGNPI 508
Query: 1085 WYENDFPPTSFS 1096
+ ++F
Sbjct: 509 CSPEYWKASTFG 520
Score = 196 bits (498), Expect = 4e-53
Identities = 32/217 (14%), Positives = 70/217 (32%), Gaps = 28/217 (12%)
Query: 1645 YYTYHTLIEGTVTAEVLSDGHVLLRDHFFNPDLIYKPNMIDEMMRGLAGTPMENLDQFVT 1704
Y +H L+ + FN ++ ++ ++ + P +
Sbjct: 353 LYHWHPLMPDSFRV---GPQDYSYEQFLFNTSMLVDYG-VEALVDAFSRQPAGRIGGG-- 406
Query: 1705 GEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPD 1764
+ H + + I+ +R + +NEYR +K ++ +L+ E
Sbjct: 407 ----------RNIDHHILHVAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTGEK-- 454
Query: 1765 EVIARFRRIYASPDDVDLFPGGLSERPVAGGMVGPTFACIIGLQFRQLRKCDRFWYET-D 1823
E+ A +Y D ++ +PG L E+ + G + + + +
Sbjct: 455 EMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLGNPICSPEYW 514
Query: 1824 DPVIRFTEPQLQEIRKATLAKEIKKATLAKVICANMD 1860
E ++ ATL K++C N
Sbjct: 515 KASTFGGEVGFNLVK---------TATLKKLVCLNTK 542
Score = 121 bits (305), Expect = 2e-28
Identities = 22/137 (16%), Positives = 50/137 (36%), Gaps = 15/137 (10%)
Query: 1309 PNHELLSDGHVLLRDHFFNPDLIYKPNMIDEMMRGLAGTPMENLDQFVTGEITNHLFEEK 1368
P+ + FN ++ ++ ++ + P + +
Sbjct: 361 PDSFRVGPQDYSYEQFLFNTSMLVDYG-VEALVDAFSRQPAGRIGGG------------R 407
Query: 1369 GRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIARFRRIYA 1428
H + + I+ +R + +NEYR +K ++ +L+ E E+ A +Y
Sbjct: 408 NIDHHILHVAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTGEK--EMAAELEELYG 465
Query: 1429 SPDDVDLFPGGLSERPV 1445
D ++ +PG L E+
Sbjct: 466 DIDALEFYPGLLLEKCH 482
Score = 98.2 bits (244), Expect = 8e-21
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 1869 LFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIARF 1928
+ + H + + I+ +R + +NEYR +K ++ +L+ E E+ A
Sbjct: 403 IGGGRNIDHHILHVAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTGEK--EMAAEL 460
Query: 1929 RRIYASPDDVDLFPGGLSERPVAD 1952
+Y D ++ +PG L E+ +
Sbjct: 461 EELYGDIDALEFYPGLLLEKCHPN 484
Score = 87.8 bits (217), Expect = 1e-17
Identities = 29/196 (14%), Positives = 55/196 (28%), Gaps = 43/196 (21%)
Query: 67 PSGKEISHKIKTSPQPHEYLSNFVGL---WSQLIRDDLTSANTTTAKKVVNQATGFLDGS 123
P + +S + + + ++Q + +D
Sbjct: 141 PDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTHQFFKTSGKMGPGFTKALGHGVDLG 200
Query: 124 KIYGSDSILSR--------------TQYGAYL-----QCVSCNSPSN------------- 151
IYG + Y V + P
Sbjct: 201 HIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEV 260
Query: 152 --------LMYKLFELEHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPV 203
L ++ EHNR+ L +P W ++ LF+ AR I+I + + +EY+
Sbjct: 261 FGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQ 320
Query: 204 LIGECVNPDWSEGVLS 219
L G + + +L
Sbjct: 321 LSGYFLQLKFDPELLF 336
Score = 72.0 bits (176), Expect = 1e-12
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 4 LFELEHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIGEVACPSRN 62
++ EHNR+ L +P W ++ LF+ AR I+I + + +EY+ L G +
Sbjct: 273 IWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFLQLKFD 331
Score = 49.3 bits (117), Expect = 1e-05
Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 1487 DPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTPRVHSVSGAPLPTARLVS 1546
SP ++ ++ E +++ ++R+LPSV D + LP A +S
Sbjct: 92 LIPSPPTYNI--AHDYISWESFSNVSYYTRILPSVPRDCPTPMGTKGK--KQLPDAEFLS 147
Query: 1547 AMVHADISHL--SNRYSLMVMQLAQTIDHDLTFT 1578
+ +LM AQ H T
Sbjct: 148 RRFLLRRKFIPDPQGTNLMFAFFAQHFTHQFFKT 181
Score = 46.6 bits (110), Expect = 8e-05
Identities = 21/121 (17%), Positives = 43/121 (35%)
Query: 400 NPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGECVNPDWSEGVLSEEARSIVIAQIQ 459
+P W + L + AR I+I + + +EY+ L G + + +L
Sbjct: 289 HPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFLQLKFDPELLFGAQFQYRNRIAM 348
Query: 460 HVTYDEYLPVLIGENVDVDDLLESVNLILQEQSEKPNISPDQMMRRLARWSPIQIPTTRN 519
+ L+ ++ V S L S + + ++ +R +I RN
Sbjct: 349 EFNQLYHWHPLMPDSFRVGPQDYSYEQFLFNTSMLVDYGVEALVDAFSRQPAGRIGGGRN 408
Query: 520 V 520
+
Sbjct: 409 I 409
Score = 45.0 bits (106), Expect = 2e-04
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 248 NPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGECVNPDWSEGVLS 295
+P W + L + AR I+I + + +EY+ L G + + +L
Sbjct: 289 HPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFLQLKFDPELLF 336
Score = 45.0 bits (106), Expect = 2e-04
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 286 NPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGECVNPDWSEGVLS 333
+P W + L + AR I+I + + +EY+ L G + + +L
Sbjct: 289 HPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFLQLKFDPELLF 336
Score = 45.0 bits (106), Expect = 2e-04
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 324 NPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGECVNPDWSEGVLS 371
+P W + L + AR I+I + + +EY+ L G + + +L
Sbjct: 289 HPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFLQLKFDPELLF 336
Score = 45.0 bits (106), Expect = 2e-04
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 362 NPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGECVNPDWSEGVLS 409
+P W + L + AR I+I + + +EY+ L G + + +L
Sbjct: 289 HPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFLQLKFDPELLF 336
>1d2v_A Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide;
HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP:
a.93.1.2 PDB: 1cxp_A* 1d5l_A* 1d7w_A* 1dnu_A* 1dnw_A*
4dl1_A* 3zs1_A* 3f9p_A* 1mhl_A* 1myp_A* 3zs0_A*
Length = 104
Score = 108 bits (270), Expect = 8e-28
Identities = 39/101 (38%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 568 CDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTPRV----HSVSGAPLPT 623
C +RTI+G CNN + G S F R LP+ YED S P +G P+
Sbjct: 1 CPEQDKYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVAL 60
Query: 624 ARLVSAMV---HADISHLSNRYSLMVMQLAQTIDHDLTFTP 661
AR VS + D SLM MQ Q +DHDL FTP
Sbjct: 61 ARAVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTP 101
Score = 108 bits (270), Expect = 8e-28
Identities = 39/101 (38%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 1486 CDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTPRV----HSVSGAPLPT 1541
C +RTI+G CNN + G S F R LP+ YED S P +G P+
Sbjct: 1 CPEQDKYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVAL 60
Query: 1542 ARLVSAMV---HADISHLSNRYSLMVMQLAQTIDHDLTFTP 1579
AR VS + D SLM MQ Q +DHDL FTP
Sbjct: 61 ARAVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTP 101
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 77.2 bits (189), Expect = 4e-14
Identities = 100/696 (14%), Positives = 207/696 (29%), Gaps = 200/696 (28%)
Query: 1409 ADLS-REIPD---EVI--ARFRRIYASPDDVD----LFPGGLSERP---VAALLDNSLDP 1455
+ +++ D ++ I S D V LF L + V ++ L
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF-WTLLSKQEEMVQKFVEEVLRI 89
Query: 1456 IGLDFIDDLNKAGFL-PPIRLQNEPSCPAEPCDPTSPFRTISGRCNNLVNTEHGRSMTTF 1514
++ FL PI+ E P+ R + + L N +
Sbjct: 90 ---NY-------KFLMSPIK--------TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 1515 SRL-----LPSVYEDLISTPRV--HSVSGA--------PLPTARLVSAM---VH-ADISH 1555
SRL L +L V V G+ + ++ M + ++ +
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 1556 LSNRYSLMVMQLAQTIDHDLTFTPVYRGFFTSIPDCRPCDSRITVHPECMPIPIPAGDPY 1615
++ +++ M Q + + + +TS D H + + I +
Sbjct: 192 CNSPETVLEML--QKLLYQID------PNWTSRSD----------HSSNIKLRIHSIQAE 233
Query: 1616 FPQYNRTTGRPLCLPFMRSLSGKKTGEPSYYTYH--TLIEGTVTAEVLSDGHVLLRDHFF 1673
+ ++ CL + ++ K + L+ T +V H
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWN--AFNLSCKILLT-TRFKQVTDFLSAATTTHIS 290
Query: 1674 NPDLIYKPNMIDEMMRGLAGTPMENLDQF--VTGEITNHLFEE--KGRPHSGVDLPALNI 1729
+D L TP E L E P + + A +I
Sbjct: 291 ----------LDHHSMTL--TPDEVKSLLLKYLDCRPQDLPREVLTTNPRR-LSIIAESI 337
Query: 1730 QRARDHGVPSYNEYRALCNLKKAKTWADLSREI--PDEVIARFRRIYASPDDVDLFPGGL 1787
+ ++ ++ + N K T + S + P E F R+ P + L
Sbjct: 338 RDGLAT----WDNWKHV-NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 1788 SERPVAGGMVGPTFACIIGLQFRQLRKCDRFWYETDDPVIRFTEPQ--LQEIRKATLA-K 1844
S W++ ++ + ++ K +L K
Sbjct: 393 S----------------------------LIWFDVIK-----SDVMVVVNKLHKYSLVEK 419
Query: 1845 EIKKATLAKVICANMDYPGEITNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRAL 1904
+ K++T+ I + E K + + AL+ + DH YN +
Sbjct: 420 QPKESTI------------SIPSIYLELKVKLE---NEYALH-RSIVDH----YNIPKTF 459
Query: 1905 CNLKKAKTWAD----------LSREIPDEVIARFRRIYASPDDVDL-FPGGLSERPVADD 1953
+ + D L E + FR ++ +D F E+ + D
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF-----LDFRF----LEQKIRHD 510
Query: 1954 NLARYLRARLQLNDTYGRKKIYHGLARPFYKIKEPKNVSWGDSEMLDDLCEGYKKATFIP 2013
+ A A + +T + K Y +P+ +PK +++ + F+P
Sbjct: 511 STA--WNASGSILNTLQQLKFY----KPYICDNDPKY-----ERLVNAI------LDFLP 553
Query: 2014 GV--DLSSGDISN------DFEGKDVIKTGFSKYQK 2041
+ +L ++ E + + + + Q+
Sbjct: 554 KIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 68.7 bits (167), Expect = 2e-11
Identities = 75/603 (12%), Positives = 162/603 (26%), Gaps = 173/603 (28%)
Query: 1223 YR-IGHSLLRPFI--LPCTNEKGTMQQ--------NVLEMPNDFTNLRVPCNALPEININ 1271
Y+ I F+ C + + + +++ + + L
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS---- 73
Query: 1272 MWKQNSHGGCNIGGVQVSVGQSHLPSPCTSCICTSEGPNHELLSDGHVLLRDHFFNPDLI 1331
KQ VQ V + N++ L ++ P ++
Sbjct: 74 --KQEE-------MVQKFVEEVL-------------RINYKFLMSP---IKTEQRQPSMM 108
Query: 1332 YKPNMIDEMMRGLAGTPMENLDQFVT-----GEITNHLFEEKGRPHSGVDL--------P 1378
+ I++ R L V+ ++ L E RP V +
Sbjct: 109 TR-MYIEQRDR-LYNDNQVFAKYNVSRLQPYLKLRQALLEL--RPAKNVLIDGVLGSGKT 164
Query: 1379 ALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSR-EIPDEVIARFRRIY--ASPDDVDL 1435
+ + + V +++ W +L P+ V+ +++ P+
Sbjct: 165 WVALDVCLSYKVQCKMDFKIF--------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 1436 --FPGGLSERPVAA------LLDNSLDPIGLDFIDDLNKAGFLPPIRLQNEPSCPAEPCD 1487
+ R + LL + L + ++ +
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV---------------------QN 255
Query: 1488 PTSPFRTISGRCNNLVNT--------------------------EHGRSMTTFSRLLPSV 1521
+ + + C L+ T + + L
Sbjct: 256 AKA-WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 1522 YEDLISTPRVHSVSGAPLPTARLVSAMVHADISHLSNRYSLMVMQLAQTIDHDL-TFTPV 1580
+DL PR ++ P + +++ + ++ N + +L I+ L P
Sbjct: 315 PQDL---PRE-VLTTNPRRLS-IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 1581 -YRGFFTSIPDCRPCDSRITVHPECMPIPIP-------AGDPYFPQYNRTTGRPLCLPFM 1632
YR F + +V P IP +
Sbjct: 370 EYRKMFDRL----------SVFPPSAHIPTILLSLIWFDVIKSDVM------VVVNKLHK 413
Query: 1633 RSLSGKKTGEPSYYTYHTL-IEGTVTAEVLSDGHVLLRDHFFNPDLIYKPNMIDEMMRGL 1691
SL +K + S + ++ +E V E H + DH +N + +
Sbjct: 414 YSLV-EKQPKESTISIPSIYLELKVKLENEYALHRSIVDH-YNIPKTFDSD--------- 462
Query: 1692 AGTPMENLDQFVTGEITNHLFEEKGRPHSGVDLPA--LN---IQRARDHGVPSYNEYRAL 1746
LDQ+ I +HL + P L+ +++ H ++N ++
Sbjct: 463 -DLIPPYLDQYFYSHIGHHL-KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520
Query: 1747 CNL 1749
N
Sbjct: 521 LNT 523
Score = 57.6 bits (138), Expect = 5e-08
Identities = 74/607 (12%), Positives = 159/607 (26%), Gaps = 204/607 (33%)
Query: 379 IAQIQHVTYDEYLPVLIGECVN-------PDWSEGVLS-EEARSIVIA--QIQHVTY--- 425
+ Q+ Y + L V V+ D + +LS EE I+++ +
Sbjct: 11 TGEHQY-QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 426 ------DEYLPVLIGECVNPD--WSEGVLSEEARSIVIAQIQHVTYDEYL----PVLIGE 473
+E + + E + + + + E R + ++ + L V
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 474 NVDVDDLLESVNLILQEQSEKPNISPDQMM--------RRLARWSPIQIPTTRNV----- 520
NV + L E N+ D ++ + +Q +
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 521 GELDE-------------QIDRRVTESAGSQIFNFIDDLN--KAGFLPPIRLQNEPSC-- 563
+ QID T + N ++ +A ++ + +C
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRS-DHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 564 -PAEPCDPTSPFRTISGRCNNLVNT--------------------------EHGRSMTTF 596
+ + + + C L+ T +
Sbjct: 249 VLLNVQNAKA-WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 597 SRLLPSVYEDLISTPRVHSVSGAPLPTARLVSAMVHADISHLSNRYSLMVMQLAQTIDHD 656
+ L +DL PR ++ P + +++ + ++ N + +L I+
Sbjct: 308 LKYLDCRPQDL---PRE-VLTTNPRRLS-IIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 657 L-TFTPV-YRGFFTS---------IP-----------------------------DCRPC 676
L P YR F IP + +P
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 677 DSRITVH--------------------------PECMP---IPIPAGDPYFPQYNRTTGR 707
+S I++ P+ + P D YF +
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH------ 476
Query: 708 PLCLPF-MRSLSGQQGFGPREQINQNSAYLDGSLIYGEHACQAK--------DLRSY--- 755
+ ++++ + + + +L+ + + A A L+ Y
Sbjct: 477 ---IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 756 ----DGKLNVTLMPGRKDLLPNTPTHPE--CRSRYCFVAGDGRASEQPGLTAMHTILMRE 809
D K + +L P E S+Y + + LM E
Sbjct: 534 ICDNDPKYERLV----NAILDFLPKIEENLICSKYTDL--------------LRIALMAE 575
Query: 810 HNRLAEQ 816
+ E+
Sbjct: 576 DEAIFEE 582
Score = 47.5 bits (112), Expect = 5e-05
Identities = 77/522 (14%), Positives = 153/522 (29%), Gaps = 143/522 (27%)
Query: 819 QINPHWNDEQLFQ--HARRIMVGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGY- 875
Q + +ND Q+F + R+ ++ + L L V + G+ G K +
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQ----PYLKLRQALLELRPAKNVLIDGVL----GSGKTWV 166
Query: 876 -NDNCKPN-IMTEFATAAYRIGHSLLRPFIPRLVIARFRRIYASPDDVDLFPGGLSERP- 932
D C + + + + +L P V+ +++ D S
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 933 -----VAARLRRIYASP---------DDV------DLFPGGLSEQPVAVIVRFRRI---- 968
+ A LRR+ S +V + F + + RF+++
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC---KILLTTRFKQVTDFL 281
Query: 969 ---YASPDDVDLFPGGLSERPVAARLRRIYASPDDVDLFPGGLSERPVAVGTLSFKLH-- 1023
+ +D L+ V + L + Y DL L+ P + ++ +
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLK-YLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 1024 --CLKGYRTFEKKSCEKTHTNIDNVDLLIGGLLENSEPGSALGITFSCLLARQFSVL-KD 1080
++ H N D + +I L EP + + SV
Sbjct: 341 LATWDNWK----------HVNCDKLTTIIESSLNVLEPAEYRK------MFDRLSVFPPS 384
Query: 1081 SD-------RFWYE----------NDFPPTSFSRGISVDPASPT----GIAAAFSKPTAE 1119
+ W++ N S + P T I
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL---VEKQPKESTISIPSIYLELKVKLEN 441
Query: 1120 ALRLSNNSIFYEYATRELMRSLKNHTI--------FY----YGMCN---------FVHVF 1158
L + SI Y + ++ + + FY + + N F VF
Sbjct: 442 EYAL-HRSIVDHY---NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497
Query: 1159 LFWFSQEFPWILLHPQGLLLHSAILITGLNAVN--LYGLKLSPTGYYKGY---NDNCKPN 1213
L +F ++ + + H + ++ L LK +YK Y ND
Sbjct: 498 L-----DFRFL----EQKIRHDSTAWNASGSILNTLQQLK-----FYKPYICDNDPKYER 543
Query: 1214 IMTEFATAAYRIGHSLLRPFILPCTNEKGTMQQNVLEMPNDF 1255
++ +I +L+ T+ + + L ++
Sbjct: 544 LVNAILDFLPKIEENLICS---KYTD----LLRIALMAEDEA 578
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 72.4 bits (177), Expect = 2e-12
Identities = 103/612 (16%), Positives = 195/612 (31%), Gaps = 238/612 (38%)
Query: 33 RSIVIAQ--IQHVTYDEYLPVLIGEVACPSRN-------------IIASPSGKEISHKIK 77
R + ++ ++HV L V P+ + I+ P+ +
Sbjct: 7 RPLTLSHGSLEHV-----LLV-------PTASFFIASQLQEQFNKILPEPTEGFAADDEP 54
Query: 78 TSPQPHEYLSNFVGLWSQLIRDDLTSANTTTAKKVVNQA-TGFLDGSKIY--------GS 128
T+P E + F+G S L+ + + +L+G+ I+ +
Sbjct: 55 TTPA--ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN 112
Query: 129 DSILSRTQYG--AYLQ-CVSCNSPSNLMYK--LFEL---EHNRLVTELAEV------NPD 174
D+ L +T+ Y+ + P + LF + +LV + D
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA----IFGGQGNTDD 168
Query: 175 WSEDVLFEEARSIVIAQIQHVTYDEYLPVLIGECVNPDWSEGVLSEEARSIVIAQIQHVT 234
+ FEE R + Y Y L+G+ + S LSE R+ + A+
Sbjct: 169 Y-----FEELRDL---------YQTYHV-LVGDLIKF--SAETLSELIRTTLDAE---KV 208
Query: 235 YDEYLPVLIGECVNPDWSEGVLSEEARSIVIAQIQHVTYDEYL---PV---LIGECVNPD 288
+ + L +L +W E +YL P+ LIG
Sbjct: 209 FTQGLNIL-------EWLEN--PSNTPD-----------KDYLLSIPISCPLIG------ 242
Query: 289 WSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGECVNPDWSEGVLSEEARSIVIAQIQ--- 345
+ + A +V A++ T E L G + S+G+++ ++ IA+
Sbjct: 243 -----VIQLAHYVVTAKLLGFTPGELRSYLKGATGH---SQGLVT----AVAIAETDSWE 290
Query: 346 --HVTYDEYLPVL--IGECVNPDWSEGVLSEEARSIVIAQIQHVTYDEYL-PVLIGECVN 400
V+ + + VL IG R + L P ++ + +
Sbjct: 291 SFFVSVRKAITVLFFIG---------------VRC------YEAYPNTSLPPSILEDSLE 329
Query: 401 PDWSEGV----LSEEARSIVIAQIQ-HVTY-DEYLPVLIGECVNPDWSEGVLSEEARSIV 454
+ EGV LS ++ Q+Q +V + +LP + +
Sbjct: 330 NN--EGVPSPMLS--ISNLTQEQVQDYVNKTNSHLP------------------AGKQVE 367
Query: 455 IAQI---QHVTYDEYLPVLIGENVDVDDLLESVNLILQ--------EQS------EKPNI 497
I+ + +++ V+ G L +NL L+ +QS K
Sbjct: 368 ISLVNGAKNL-------VVSGPPQS----LYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 498 S--------P----------DQMMRRLAR----WSP--IQIP-----TTRNVGELDEQID 528
S P D + + L + ++ IQIP ++ L I
Sbjct: 417 SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS 476
Query: 529 RRVTESAGSQIF 540
R+ + I
Sbjct: 477 ERIVD----CII 484
Score = 67.4 bits (164), Expect = 6e-11
Identities = 98/593 (16%), Positives = 175/593 (29%), Gaps = 243/593 (40%)
Query: 905 RLVIARFRRIYASPDDVDLFPGGL------------------------SERPVAAR---- 936
L + F Y +D+ L ++RP +
Sbjct: 85 NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 937 -LR-------RIYASPDDVDLFPG-GLSEQPVAVIVRF---RRIYASPDDV--DLFPGGL 982
R ++ A +F G G ++ F R +Y + + DL
Sbjct: 145 LFRAVGEGNAQLVA------IFGGQGNTDDY------FEELRDLYQTYHVLVGDLI---- 188
Query: 983 SERPVAARLRRIYASPDDVD-LFPGGL---------SERP----VAVGTLSFKLHCL--- 1025
+ A L + + D + +F GL S P + +S L +
Sbjct: 189 --KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQL 246
Query: 1026 KGYRTFEKKSCEKTHTNIDNVDLLIGGLLENSEPG--SALGI-------TFSCLLARQFS 1076
Y + + + G +S+ G +A+ I +F + + +
Sbjct: 247 AHYVVT----AKLLGFTPGELRSYLKGATGHSQ-GLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 1077 VLKDSDRFW-----YENDFPPTSFSRGISVD-------PASP----TGIAAAFSKPTAEA 1120
VL F+ YE +P TS I D SP + + ++ +
Sbjct: 302 VL-----FFIGVRCYEA-YPNTSLPPSILEDSLENNEGVPSPMLSISNL----TQEQVQD 351
Query: 1121 -LRLSNNSIFYEYATRELMRSLKNHTIFYYGMCNFVHVFLFWFSQEFPWILLHPQGLLLH 1179
+ +N+ + A +++ SL N G N V
Sbjct: 352 YVNKTNSHLP---AGKQVEISLVN------GAKNLV------------------------ 378
Query: 1180 SAILITGLNAVNLYGLKLS------PTGYYKGYNDNC-------KPNIMTEF--ATAAYR 1224
++G +LYGL L+ P+G D K F + +
Sbjct: 379 ----VSG-PPQSLYGLNLTLRKAKAPSG-----LDQSRIPFSERKLKFSNRFLPVASPF- 427
Query: 1225 IGHS-LLRPFILPCTNEKGTMQQNVLEMPNDFTNLRVPCNALPEININMWKQNSHGGCNI 1283
HS LL P ++ + D V NA +I I ++ ++ G ++
Sbjct: 428 --HSHLLVP-----ASDL---------INKDLVKNNVSFNA-KDIQIPVY--DTFDGSDL 468
Query: 1284 GGVQVSVGQSHLPSPCTSCICTSEGPNH-ELLSDG---HVLLRDHFFNPDLIYKPNMIDE 1339
+ S+ + + CI P E + H+L D F P
Sbjct: 469 RVLSGSISERIVD-----CIIRL--PVKWETTTQFKATHIL--D--FGPG---------- 507
Query: 1340 MMRGLAGTPMENLDQFVTGEITNHLFEEKGRPHSGVDL---PALNIQRARDHG 1389
G +G G +T+ + G GV + L+I D+G
Sbjct: 508 ---GASG----------LGVLTHRNKD--GT---GVRVIVAGTLDINPDDDYG 542
Score = 63.9 bits (155), Expect = 6e-10
Identities = 98/616 (15%), Positives = 177/616 (28%), Gaps = 215/616 (34%)
Query: 1060 GSALGITFSCLLARQ----FSVLKDSDRFWYENDFP-PTSFSRGISVD--PASPTGIAAA 1112
GS + L+ S L++ +F P PT G + D P +P +
Sbjct: 14 GS---LEHVLLVPTASFFIASQLQE--QF--NKILPEPT---EGFAADDEPTTPAELVGK 63
Query: 1113 FSKPTAEALRLSNNSIFYEYATRELMRSLKNH--TIFYYGMCNFVHVFLFWFSQEFPWIL 1170
F + + S +++ + G N +H QE L
Sbjct: 64 FLGYVSSLVEPSKVG-----QFDQVLNLCLTEFENCYLEG--NDIHALAAKLLQENDTTL 116
Query: 1171 LHPQGLLLH--SAILITGLNAVNLYG---LKLSPTGYYK--------GYNDNCKPNIMTE 1217
+ + L+ + +A ++ + G + G D+ E
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY----FEE 172
Query: 1218 FATAAYRIGHSLLRPFILPCTNEKGTMQQNVLEMPNDFTNLRVPCNALPEININMWKQNS 1277
Y+ H L+ I + + L+ FT +NI W +N
Sbjct: 173 LRDL-YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ---------GLNILEWLENP 222
Query: 1278 HGGCNIGGVQVSVGQSHLPSPCTSCICTSEGPNHELLSDGH--VLLRDHFFNPDLIYKPN 1335
+ + +L S SC P ++ H V + F P +
Sbjct: 223 ---------SNTPDKDYLLSIPISC------PLIGVIQLAHYVVTAKLLGFTPGELR--- 264
Query: 1336 MIDEMMRGLAGTP------------------MENLDQFVTGEITNHLFEEKGRPHSGV-- 1375
++G G ++ + +T LF GV
Sbjct: 265 ---SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT-----VLF------FIGVRC 310
Query: 1376 -------DLPALNIQRARDH--GVPSYNEYRALCNLKKAKTWADLSREIPDEVIARFRRI 1426
LP ++ + ++ GVPS L ++ +L++E + + +
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSP----ML-SIS------NLTQEQVQDYVNKTNSH 359
Query: 1427 YASPDDVDLFPGGLSERPVAALLDNSLDPIGLDFIDDLNKAGFLPPIRLQN------EPS 1480
P + + V L N + + + +G PP L +
Sbjct: 360 ---------LP---AGKQVEISLVNGAK----NLV--V--SG--PPQSLYGLNLTLRKAK 397
Query: 1481 CPAEPCDPT-SPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLISTPRVHSVSGAPL 1539
P+ D + PF R + +R LP +++P HS L
Sbjct: 398 APSG-LDQSRIPFS--------------ERKLKFSNRFLP------VASP-FHS----HL 431
Query: 1540 PTARLVSA--MVHADISHLSNRYSLMVMQLAQTID---HDLTFTPVY--------RGFFT 1586
LV A +++ D+ + D+ PVY R
Sbjct: 432 ----LVPASDLINKDLV-------------KNNVSFNAKDIQI-PVYDTFDGSDLRVLSG 473
Query: 1587 SIPDCRPCDSRITVHP 1602
SI + R D I P
Sbjct: 474 SISE-RIVDC-IIRLP 487
Score = 57.8 bits (139), Expect = 4e-08
Identities = 118/657 (17%), Positives = 197/657 (29%), Gaps = 229/657 (34%)
Query: 515 PTTRNVGELDEQIDRRVTES---AGSQIF-NFIDDLNKAGFLPPIRL--QNEPSCPAE-- 566
P T + G L+ + V + SQ+ F L + P +EP+ PAE
Sbjct: 8 PLTLSHGSLEHVLL--VPTASFFIASQLQEQFNKILPE----PTEGFAADDEPTTPAELV 61
Query: 567 ---------PCDPTSP-------------FRT--ISGRCNNL------VNTEHGRSMTTF 596
+P+ F + G N++ + E+ ++
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG--NDIHALAAKLLQENDTTLVKT 119
Query: 597 SRLLPSVYE--DLISTPRVHSVSGAPLPTARLVSAMVHA-------------DISHLSNR 641
L+ + + P + A +A + A ++ L
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT 179
Query: 642 YSLMV--------MQLAQTIDHDLTFTPVY-RGF----FTSIPDCRPCDSRITVHPECMP 688
Y ++V L++ I L V+ +G + P P + P P
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239
Query: 689 IPIPAGDPYFPQYNRTTGRPLCLPFMRSLSGQQGFGPREQINQNSAYLDGSLIYGEH--- 745
+ I G Y T + L GF P E +YL G+ + +
Sbjct: 240 L-I--GVIQLAHYVVT-----A----KLL----GFTPGEL----RSYLKGATGHSQGLVT 279
Query: 746 AC---QAKDLRSYD--GKLNVTLM--PG-R-KDLLPNTPTHPECRSRYCFVAGDGRASEQ 796
A + S+ + +T++ G R + PNT P +G S
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI-LEDSLENNEGVPS-- 336
Query: 797 PGLTAMHTI--LMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHI-VYNEFLPRL 853
P M +I L +E + + + + N H +++ I + N +
Sbjct: 337 P----MLSISNLTQEQ--VQDYVNKTNSH------LPAGKQV------EISLVNG--AK- 375
Query: 854 LGLNAV------NLYGLKLS------PTGYYKGYNDNC-------KPNIMTEF--ATAAY 892
N V +LYGL L+ P+G D K F + +
Sbjct: 376 ---NLVVSGPPQSLYGLNLTLRKAKAPSG-----LDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 893 RIGHS-LLRPFIPRLVIARFRRIYASPDDVDLFPGGLSERPVAARLRRIYASPDDVDL-- 949
HS LL P + ++V + PV Y + D DL
Sbjct: 428 ---HSHLLVPASDLINKD------LVKNNVSFNAKDIQI-PV-------YDTFDGSDLRV 470
Query: 950 FPGGLSEQPVAVIVRFRRIYASPDDVDLFPGGLSERPVAARLRRIYASPDDVDLFPGGLS 1009
G +SE+ V I+R V E + I +D PGG S
Sbjct: 471 LSGSISERIVDCIIRLP--------VKW------ETTTQFKATHI------LDFGPGGAS 510
Query: 1010 ERPVAVGTLSFKLHCLKGYRTFEKKSCEKTHTNIDN--VDLLIGGLLENSEPGSALG 1064
+G L TH N D V +++ G L+ + P G
Sbjct: 511 ----GLGVL--------------------THRNKDGTGVRVIVAGTLDIN-PDDDYG 542
Score = 53.9 bits (129), Expect = 6e-07
Identities = 88/589 (14%), Positives = 145/589 (24%), Gaps = 272/589 (46%)
Query: 334 EEARSIVIAQIQHVTYDEYLPVLIGECVNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPV 393
EE R + Y Y L+G+ + S LSE R+ + A+ + + L +
Sbjct: 171 EELRDL---------YQTYHV-LVGDLIKF--SAETLSELIRTTLDAE---KVFTQGLNI 215
Query: 394 LIGECVNPDW--------SEGVLSEEARS---IVIAQIQHVTYDEYLPVLIGECVNP--- 439
L +W + L S I + Q+ H Y+ P
Sbjct: 216 L-------EWLENPSNTPDKDYLLSIPISCPLIGVIQLAH-----YVVTAKLLGFTPGEL 263
Query: 440 -DWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGENVDVDDLLESVNLILQE-------- 490
+ +G + ++ +V A V I E + SV +
Sbjct: 264 RSYLKG-ATGHSQGLVTA------------VAIAETDSWESFFVSVRKAITVLFFIGVRC 310
Query: 491 QSEKPNISPDQMMRRLARWSPIQIPTTRNVGE------LDEQIDRRVTESAGSQIFNFID 544
PN S P + + E L ++ Q+ ++++
Sbjct: 311 YEAYPNTSL----------PPSILEDSLENNEGVPSPML------SISNLTQEQVQDYVN 354
Query: 545 DLNKAGFLPP-----IRLQNEPSCPAEPCDP---TSPFRTISGRCNNL----VNTEHGRS 592
N LP I L N + P +++ G L + +S
Sbjct: 355 KTNS--HLPAGKQVEISLVNGA-------KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 593 MTTFS--------RLLPSVYEDLISTPRVHSVSGAPLPTARLVSAMVHADISHLSNRYSL 644
FS R LP +++P HS L LV A
Sbjct: 406 RIPFSERKLKFSNRFLP------VASP-FHS----HL----LVPA--------------- 435
Query: 645 MVMQLAQTIDHDLTFTPVYRGFFTSIPDCRPCDSRITVHPECMPIPIPAGDPYFPQYNRT 704
+ I+ DL + A D P Y+
Sbjct: 436 -----SDLINKDL---------------------------VKNNVSFNAKDIQIPVYDTF 463
Query: 705 TGRPLCLPFMRSLSGQQGFGPREQINQNSAYLDGSLIYGEHACQAKDLRSYDGKLN---- 760
G DLR G ++
Sbjct: 464 DG-------------------------------------------SDLRVLSGSISERIV 480
Query: 761 --VTLMPGR-KDLLPNTPTHPECRSRYCFVA-GDGRASEQPGLTAMHTILMREHNRLAEQ 816
+ +P + + TH + G G AS LT
Sbjct: 481 DCIIRLPVKWETTTQFKATH--------ILDFGPGGASGLGVLTH--------------- 517
Query: 817 LVQINPHWNDEQLFQHARRIMVGQWQHIVYNEFLPRLLGLNAVNLYGLK 865
R G ++ + L +N + YG K
Sbjct: 518 ------------------RNKDGTGVRVI----VAGTLDINPDDDYGFK 544
Score = 53.9 bits (129), Expect = 7e-07
Identities = 115/655 (17%), Positives = 195/655 (29%), Gaps = 232/655 (35%)
Query: 1439 GLSERPVAALLDNSLD-----PIGLDFIDDLNKAGF---LPP----IRLQNEPSCPAE-- 1484
S RP+ L SL+ P FI + F LP +EP+ PAE
Sbjct: 3 AYSTRPLT-LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 1485 ---------PCDPTSP-------------FRT--ISGRCNNL------VNTEHGRSMTTF 1514
+P+ F + G N++ + E+ ++
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG--NDIHALAAKLLQENDTTLVKT 119
Query: 1515 SRLLPSVYE--DLISTPRVHSVSGAPLPTARLVSAMVHA-------------DISHLSNR 1559
L+ + + P + A +A + A ++ L
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT 179
Query: 1560 YSLMV--------MQLAQTIDHDLTFTPVY-RGF----FTSIPDCRPCDSRITVHPECMP 1606
Y ++V L++ I L V+ +G + P P + P P
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239
Query: 1607 IPIPAGDPYFPQYNRTTGRPLCL-P--FMRSLSGKKTGEPSYYTYHTLIEGTVTAEVLSD 1663
+ I G Y T + L P L G T H+ +G VTA +++
Sbjct: 240 L-I--GVIQLAHY-VVTAKLLGFTPGELRSYLKGA--------TGHS--QGLVTAVAIAE 285
Query: 1664 GHVLLRDHFFNPDLIYKPNMIDEMMRGLAGTPMENLDQFVTGEITNHLFEEKGRPHSGVD 1723
+ FF + + + L F G + P++
Sbjct: 286 TDS--WESFFV--------SVRKAITVL----------FFIGVRCYEAY-----PNT--S 318
Query: 1724 LPALNIQRARDH--GVPSYNEYRALCNLKKAKTWADLSREIPDEVIARF-------RRIY 1774
LP ++ + ++ GVPS L ++ +L++E + + + +++
Sbjct: 319 LPPSILEDSLENNEGVPSP----ML-SIS------NLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 1775 ASPDDVDLFPGGLSERPVAGGMV--GPTFACIIGLQFRQLRK--CDRFWYETDDPVIRFT 1830
S L G +V GP + + GL LRK D I F+
Sbjct: 368 IS-----LVNG-----AKN--LVVSGPPQS-LYGLN-LTLRKAKAPS---GLDQSRIPFS 410
Query: 1831 EPQLQEIRKATLAKEIKKATLAKVICANMDYPGEITNHLFEEKGRPHS----------GV 1880
E RK + L + + P F HS
Sbjct: 411 E------RKLKFSNRF----L--PVAS----P-------F------HSHLLVPASDLINK 441
Query: 1881 DLPALNIQ-RARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIAR-FRRIYASPDD- 1937
DL N+ A+D +P Y+ +DL R + + R I P
Sbjct: 442 DLVKNNVSFNAKDIQIPVYD----------TFDGSDL-RVLSGSISERIVDCIIRLPVKW 490
Query: 1938 -----------VDLFPGGLSE-RPVADDNL----ARYLRA---RLQLNDTYGRKK 1973
+D PGG S + N R + A + +D YG K+
Sbjct: 491 ETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545
Score = 52.4 bits (125), Expect = 2e-06
Identities = 65/433 (15%), Positives = 126/433 (29%), Gaps = 148/433 (34%)
Query: 1716 GRPHSGVDLPALNIQRARDHGVPSY---------NEY----RALCNLKKAKTWADLSREI 1762
RP AL + + ++Y R L +T+ L ++
Sbjct: 134 KRPFDKKSNSAL-FRAVGEGNAQLVAIFGGQGNTDDYFEELRDL-----YQTYHVLVGDL 187
Query: 1763 PDEVIARFRRIYASPDDVD-LFPGGL---------SERPVAGGMVGPTFAC-IIGL-QFR 1810
+ + D + +F GL S P ++ +C +IG+ Q
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLA 247
Query: 1811 QLRKCDRFWYETDDPVIRFTEPQLQEIRKATLAKEIKKATL-AKVICANMDYPGEITN-- 1867
Y ++ FT +L+ K + + A I + +
Sbjct: 248 H--------YVVTAKLLGFTPGELRSYLKGATG--HSQGLVTAVAIAETDSWESFFVSVR 297
Query: 1868 ----HLFEEKGRPHSGV---------DLPALNIQRARDH--GVPSYNEYRALCNLKKAKT 1912
LF GV LP ++ + ++ GVPS L ++
Sbjct: 298 KAITVLF------FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP----ML-SIS---- 342
Query: 1913 WADLSREIPDEVIARF-------RRIYAS----PDDV-------DLF-----------PG 1943
+L++E + + + +++ S ++ L+ P
Sbjct: 343 --NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS 400
Query: 1944 GL-------SERPVADDNLARYLR-------------ARLQLNDTYGRKKIYHG--LARP 1981
GL SER + N R+L + L D ++ + P
Sbjct: 401 GLDQSRIPFSERKLKFSN--RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 1982 FYKIKEPKNVSWGDSEMLDDLCE------------GYKKAT----FIPGVDLSSGDISND 2025
Y + ++ + + + + KAT F PG G +++
Sbjct: 459 VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHR 518
Query: 2026 F-EGK--DVIKTG 2035
+G VI G
Sbjct: 519 NKDGTGVRVIVAG 531
Score = 50.8 bits (121), Expect = 5e-06
Identities = 49/272 (18%), Positives = 80/272 (29%), Gaps = 77/272 (28%)
Query: 69 GKEISHKIKTSPQPHEYLSNFVGLWSQLIRD-------DLTSANTTTAKKVVNQATGFLD 121
G I + +P +F G + IR+ + +K+ +
Sbjct: 1658 GFSILDIVINNPV--NLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHST 1715
Query: 122 GSKIYGSDSILSRTQYGAYLQCVSCNSPSNLM---YKLFE-LEHNRLVTE---------- 167
+LS TQ + Q P+ L FE L+ L+
Sbjct: 1716 SYTFRSEKGLLSATQ---FTQ------PA-LTLMEKAAFEDLKSKGLIPADATFAGHSLG 1765
Query: 168 ----LAEVNPDWSEDVL-FEEARSIV----IAQIQHVTYDEYLPVLIGEC-VNPDWSEGV 217
LA + DV+ E +V + V DE G +NP
Sbjct: 1766 EYAALASLA-----DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAAS 1820
Query: 218 LSEEARSIVIAQIQHVTYDEYLPVLIGECVNPDWSEGVLSEEARSIVIAQIQHVTYDEYL 277
S+EA V+ ++ T + E VN E + V A
Sbjct: 1821 FSQEALQYVVERVGKRT-GWLV-----EIVN-YNVEN------QQYVAA----------- 1856
Query: 278 PVLIGECVNPDWSEGVLSE-EARSIVIAQIQH 308
G+ D VL+ + + I I ++Q
Sbjct: 1857 ----GDLRALDTVTNVLNFIKLQKIDIIELQK 1884
Score = 45.4 bits (107), Expect = 2e-04
Identities = 91/639 (14%), Positives = 181/639 (28%), Gaps = 224/639 (35%)
Query: 414 SIVIAQIQHVTY----DEYLPVLIGECVNPDWSEGV-LSEEARSIV--IAQ-IQHVT--- 462
+++ +++ +L P+ +EG +E + + + + +V+
Sbjct: 19 VLLVPTASFFIASQLQEQFNKIL------PEPTEGFAADDEPTTPAELVGKFLGYVSSLV 72
Query: 463 -------YDEYLPVLIGE-------NVDVDDLLESVNLILQEQSEKPNISPDQMMRR--L 506
+D+ L + + E D+ L L ++++ + ++++
Sbjct: 73 EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK----LLQENDTTLVKTKELIKNYIT 128
Query: 507 ARWSPIQIPTTRNVGELDEQIDRRVTESA----------------GSQ--IFNFIDDLNK 548
AR + P + + SA G Q ++ ++L
Sbjct: 129 AR-IMAKRPFDKK------------SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 549 AGFLPPIRLQNEPSCPAEPCDPTSPFRTISGRCNNLVNTEHGRSMTTFSRLLPSVYEDLI 608
L + + + L+ R+ ++ +++
Sbjct: 176 --------LYQTYHVLVGDL-----IKFSAETLSELI-----RTTLDAEKVFTQGL-NIL 216
Query: 609 S---TPRVHSVSGAPLPTARLVSAMVHADISHLSNRYSL---MVMQLAQ--TIDHDLTFT 660
P S P L+S + S V+QLA L FT
Sbjct: 217 EWLENP-----SNTP-DKDYLLSIPI-----------SCPLIGVIQLAHYVVTAKLLGFT 259
Query: 661 PVYRGFFTSIPDCRPCDSRITVHPECMP--IPIPAGDPYFPQYNRTTGRPLCLPFMRSLS 718
P + R T H + + + I D + + + + + + F +
Sbjct: 260 P---------GELRSYLKGATGHSQGLVTAVAIAETDSW-ESFFVSVRKAITVLFFIGVR 309
Query: 719 GQQGFGPREQINQNSAYLDGSLIYGEHA---------CQAKDLRSYDGKLNVTLMPGRKD 769
+ + P + + L+ SL E + ++ Y K N L P K
Sbjct: 310 CYEAY-PNTSLP--PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL-PAGKQ 365
Query: 770 L---LPNTPTHPECRSRYCFV-AGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWN 825
+ L N + V +G ++ L ++ L + P
Sbjct: 366 VEISLVNGAKN--------LVVSGPPQS-----LYGLNLTLRKAKA----------PSGL 402
Query: 826 DEQLFQHARRIMVGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMT 885
D Q RI + + N FLP V SP ++ I
Sbjct: 403 D----QS--RIPFSERKLKFSNRFLP-------VA------SP--FHSHLLVPASDLINK 441
Query: 886 EFATAAYRI-GHSL------------LRPF----IPRLV--IARFRRIY---ASPDD--- 920
+ + LR R+V I R + +
Sbjct: 442 DLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIR-LPVKWETTTQFKATH 500
Query: 921 -VDLFPGG------LSERPVAAR-LRRIYA-----SPDD 946
+D PGG L+ R +R I A +PDD
Sbjct: 501 ILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDD 539
Score = 44.3 bits (104), Expect = 5e-04
Identities = 54/315 (17%), Positives = 94/315 (29%), Gaps = 101/315 (32%)
Query: 104 ANTTTAKKVVNQATGFLDGSKIYGSDSILSRTQYGAYLQCVSCNSPSNLMYKLFELEHNR 163
+ A+ V N+A + YG + + N+P NL F E +
Sbjct: 1637 KTSKAAQDVWNRADNHF-------------KDTYGFSILDIVINNPVNL-TIHFGGEKGK 1682
Query: 164 LVTE-----LAEVNPDWSEDV--LFEEARSIVIAQIQHVTYDEYLPVLIGECVNPDWSEG 216
+ E + E D +F+E +E+ + +G
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEI-------------NEHSTSYTFR--SE---KG 1724
Query: 217 VLSE-E----ARSIV---IAQIQHVTYDEYLPVL-------IGE-----CVNPDWSEGVL 256
+LS + A + A + + +P +GE + V+
Sbjct: 1725 LLSATQFTQPA--LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLA-----DVM 1777
Query: 257 S-EEARSIV----IAQIQHVTYDEYLPVLIGEC-VNPDWSEGVLSEEARSIVIAQIQHVT 310
S E +V + V DE G +NP S+EA V+ ++ T
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 311 YDEYLPVLIGECVNPDWSEGVLSEEARSIVIAQIQHVTYDEYLPVLIGECVNPDWSEGVL 370
+ E VN E + V A G+ D VL
Sbjct: 1838 -GWLV-----EIVN-YNVEN------QQYVAA---------------GDLRALDTVTNVL 1869
Query: 371 SE-EARSIVIAQIQH 384
+ + + I I ++Q
Sbjct: 1870 NFIKLQKIDIIELQK 1884
Score = 44.3 bits (104), Expect = 6e-04
Identities = 54/356 (15%), Positives = 95/356 (26%), Gaps = 142/356 (39%)
Query: 1072 ARQFSVLKDSDRFWYENDFPPTSFS-RGISVDPASPTGIAAAFSKPTAEALRLSNNSIFY 1130
A+ V +D + + FS I ++ +P + F + +R + +++ +
Sbjct: 1642 AQD--VWNRADNHFKDT----YGFSILDIVIN--NPVNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 1131 EYA------TRELMRSLKNHTIFYYGMCNFVHVFLFWFSQEFPWILLHPQGLLLHS---- 1180
E T ++ + + H+ Y +GLL +
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSY--------------------TFRSEKGLLSATQFTQ 1733
Query: 1181 -AILITGLNAVNLYGLK---LSPTGYYKGYNDNCKPNIMTEFATAAYRIGHSL------- 1229
A+ + A LK L P FA GHSL
Sbjct: 1734 PALTLMEKAAFED--LKSKGLIPADAT--------------FA------GHSLGEYAALA 1771
Query: 1230 -----LRPF--ILPCTNEKGTMQQNVLEMPNDFTNLRVPCNALPEININMWKQNSHGGCN 1282
+ ++ +G Q VP + L N M N
Sbjct: 1772 SLADVM-SIESLVEVVFYRGMTMQVA-----------VPRDELGRSNYGM------IAIN 1813
Query: 1283 IGGVQVSVGQSHLPSPCTSCICTSEGP-----NHELLSDGHVLLRDHFFN-PDLIYKPNM 1336
G V S Q L + G N +N + Y
Sbjct: 1814 PGRVAASFSQEALQYVV-ERVGKRTGWLVEIVN---------------YNVENQQY---- 1853
Query: 1337 IDEMMRGLAGTPMENLDQFVTGEITNHLFEEKGRPHSGVDLPALN----IQRARDH 1388
+ AG + LD + N + +K +D+ L ++ H
Sbjct: 1854 V------AAGD-LRALDTVT--NVLNFIKLQK------IDIIELQKSLSLEEVEGH 1894
Score = 41.6 bits (97), Expect = 0.004
Identities = 31/170 (18%), Positives = 52/170 (30%), Gaps = 58/170 (34%)
Query: 357 IGE-----CVNPDWSEGVLS-EEARSIV----IAQIQHVTYDEYLPVLIGEC-VNPDWSE 405
+GE + V+S E +V + V DE G +NP
Sbjct: 1764 LGEYAALASLA-----DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVA 1818
Query: 406 GVLSEEARSIVIAQIQHVTYDEYLPVLIGECVNPDWSEGVLSEEARSIVIAQIQHVTYDE 465
S+EA V+ ++ T + E VN E + V A
Sbjct: 1819 ASFSQEALQYVVERVGKRT-GWLV-----EIVN-YNVEN------QQYVAA--------- 1856
Query: 466 YLPVLIGENVDVDDLLESVNLI---------LQEQSEKPNISPDQMMRRL 506
G+ +D + +N I LQ+ +S +++ L
Sbjct: 1857 ------GDLRALDTVTNVLNFIKLQKIDIIELQKS-----LSLEEVEGHL 1895
Score = 41.2 bits (96), Expect = 0.005
Identities = 57/374 (15%), Positives = 102/374 (27%), Gaps = 153/374 (40%)
Query: 1563 MVMQLAQTIDH--------DLTFTPVYRGFFTSIPDC---RPCDSRITVHPECMPIPIPA 1611
M M L +T D F Y GF SI D P +T+H
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTY-GF--SILDIVINNP--VNLTIH---------- 1675
Query: 1612 GDPYFPQYNRTTGRPLCLPFMRSLSGKKTGEPSYYTYHTLIEGTVTAE-VLSDGHVLLRD 1670
F G+ + + + T+++G + E + + +
Sbjct: 1676 ----FGGEK---GKRIRENYSA------------MIFETIVDGKLKTEKIFKEINEHSTS 1716
Query: 1671 HFFNPDLIYKPNMIDEMMRGLAGTPMENLDQ---FVTGEITNHLFEEKG-RP-------H 1719
+ F + + L+ T + Q + + + KG P H
Sbjct: 1717 YTFRSE--------KGL---LSAT--QFT-QPALTLMEKAAFEDLKSKGLIPADATFAGH 1762
Query: 1720 SGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVIARFRRIYASPDD 1779
S L G EY AL +L + L + +R
Sbjct: 1763 S------L--------G-----EYAALASLADVMSIESLVE------VVFYR-------- 1789
Query: 1780 VDLFPGGLSERPVAGGMVGPTFACIIGLQFRQLRKCDRFWYETDDP---VIRFTEPQLQE 1836
G + V +G + +I + +P F++ LQ
Sbjct: 1790 -----GMTMQVAVPRDELGRSNYGMIAI----------------NPGRVAASFSQEALQY 1828
Query: 1837 IRKATLAKEIKKATLAKVICANMDYPGE-------------ITNHLFEEKGRPHSGVDLP 1883
+ + + K T V N + + +TN L K + +D+
Sbjct: 1829 V-----VERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQ---KIDII 1880
Query: 1884 ALN----IQRARDH 1893
L ++ H
Sbjct: 1881 ELQKSLSLEEVEGH 1894
Score = 32.3 bits (73), Expect = 2.3
Identities = 26/166 (15%), Positives = 53/166 (31%), Gaps = 48/166 (28%)
Query: 1321 LRDHFFNPDLIYKPNMIDEMMRGLAGTPMENLDQFVTGEITNHLFEEKGRPHSGVDL--- 1377
+R+++ +I++ ++D E + + + T++ F +
Sbjct: 1684 IRENY--SAMIFE-TIVD------GKLKTEKIFKEINEHSTSYTFRS---EKGLLSATQF 1731
Query: 1378 --PAL------NIQRARDHG-VP--------SYNEYRALCNLKKAKTWADLSREIPDEVI 1420
PAL + + G +P S EY AL +L + L +
Sbjct: 1732 TQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE------V 1785
Query: 1421 ARFRRIY---ASPDDVDLFPGGLSERPVAALLDNSLDPIGLDFIDD 1463
+R + A P D G S + A+ + F +
Sbjct: 1786 VFYRGMTMQVAVPRD----ELGRSNYGMIAINPGR---VAASFSQE 1824
Score = 31.6 bits (71), Expect = 3.6
Identities = 14/92 (15%), Positives = 26/92 (28%), Gaps = 24/92 (26%)
Query: 8 EHNRLVTELAEVNPDWSEDVLFEEARSIVIAQIQHVTYDEYLPVLIGEVA---CPSRNII 64
E R + +NP +EA V+ ++ T + E+ ++ +
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT-GWLV-----EIVNYNVENQQYV 1854
Query: 65 ASPSG------------KEI-SHKIKTSPQPH 83
A +G I KI
Sbjct: 1855 A--AGDLRALDTVTNVLNFIKLQKIDIIELQK 1884
Score = 31.6 bits (71), Expect = 4.2
Identities = 38/247 (15%), Positives = 66/247 (26%), Gaps = 92/247 (37%)
Query: 925 PG-GLSER---PVAARLRRIYASPDDVDLFPG---GLS------EQPVAVIVRF-----R 966
G G+ A + ++ + D G S PV + + F +
Sbjct: 1629 QGMGMDLYKTSKAA---QDVW---NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 967 RI---YASPDDVDLFPGGLSERPVAARLRR-----IYASPDDVDLF------PGGLSERP 1012
RI Y++ + G L + + + S + L P
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL-LSATQFTQP------- 1734
Query: 1013 VAVGTLSFKLHCLKGYRTFEKKSCEKTHTNIDNVDLLIG---GLLENSEPGSALGITFSC 1069
A+ + + + K I G G E + AL
Sbjct: 1735 -ALTLMEKAA-----FEDLKSK------GLIPADATFAGHSLG--EYA----AL-----A 1771
Query: 1070 LLARQFSVLKDSDRFWYENDFPPTSFSRGISVDPASP--------TGIAAAFSKPTAEAL 1121
LA S ++ F RG+++ A P G+ A P A
Sbjct: 1772 SLADVMS-IESLVE---------VVFYRGMTMQVAVPRDELGRSNYGMIAI--NPGRVAA 1819
Query: 1122 RLSNNSI 1128
S ++
Sbjct: 1820 SFSQEAL 1826
Score = 31.2 bits (70), Expect = 4.6
Identities = 39/246 (15%), Positives = 77/246 (31%), Gaps = 80/246 (32%)
Query: 1838 RKATLAKEI-KKA----------TLAKVICANMDYPGEITNHLFEEKGRPHSGVDLPALN 1886
+ + A+++ +A ++ ++ N P +T H EKG+ + A+
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFSILDIVINN---PVNLTIHFGGEKGK-RIRENYSAMI 1692
Query: 1887 IQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEV---------------IARFRRI 1931
+ D + + ++ + + T+ + A F +
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTF-----RSEKGLLSATQFTQPALTLMEKAAFEDL 1747
Query: 1932 YA---SPDDVDLFPG---G----LSERPVAD----DNLARYLRARLQL------NDTYGR 1971
+ P D F G G L+ +AD ++L + R D GR
Sbjct: 1748 KSKGLIPAD-ATFAGHSLGEYAALAS--LADVMSIESLVEVVFYRGMTMQVAVPRDELGR 1804
Query: 1972 KKIYHGLARPFYKIKEPKNVSWG-DSEMLDDLCEGYKKAT--------F-IPG---VDLS 2018
Y +A P V+ E L + E K T + + V +
Sbjct: 1805 SN-YGMIAI------NPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV--A 1855
Query: 2019 SGDISN 2024
+GD+
Sbjct: 1856 AGDLRA 1861
>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two
SUB-domain architecture, beta-sheet, structural protein;
NMR {Homo sapiens} SCOP: g.27.1.2
Length = 73
Score = 29.9 bits (67), Expect = 1.4
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 1279 GGCNIGGVQVSVGQSHLPSPCTSCIC 1304
G C G + + P PC C+C
Sbjct: 8 GSCVQDGQRYNDKDVWKPEPCRICVC 33
>3naf_A Calcium-activated potassium channel subunit alpha; ION channel,
gating ring, rossman fold, transport, ION trans; 3.10A
{Homo sapiens}
Length = 798
Score = 32.3 bits (72), Expect = 2.0
Identities = 8/84 (9%), Positives = 23/84 (27%), Gaps = 3/84 (3%)
Query: 780 CRSRYCFVAGDGRASEQP---GLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRI 836
+ C + + ++ M I ++ ++ + Q+ + N L
Sbjct: 128 ESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAHLLNIPSWN 187
Query: 837 MVGQWQHIVYNEFLPRLLGLNAVN 860
I E + + +
Sbjct: 188 WKEGDDAICLAELKLGFIAQSCLA 211
>3kbe_A Superoxide dismutase [CU-ZN]; Cu-Zn superoxide dismutase,
antioxidant, oxidoreductase, NEM disulfide bond,
metal-binding; 1.10A {Caenorhabditis elegans} PDB: 3kbf_A
Length = 157
Score = 30.4 bits (69), Expect = 3.3
Identities = 25/102 (24%), Positives = 35/102 (34%), Gaps = 16/102 (15%)
Query: 1708 TNHLFEEKGRPHSGVDLPALNIQRARDHGVPSYNEYRALCNLKKAKTWADLSREIPDEVI 1767
H + H G DL N++ A GV L L P+ V+
Sbjct: 68 KTHGGPKSEIRHVG-DLG--NVE-AGADGVAKIKLTDTLVTLYG-----------PNTVV 112
Query: 1768 ARFRRIYASPDDVDLFPGGLSERPVAGGMVGPTFAC-IIGLQ 1808
R ++A DD+ G +E G G AC +I L
Sbjct: 113 GRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIALA 154
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance,
acquired B3, drug binding; 1.40A {Pseudomonas
aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B
Length = 303
Score = 30.8 bits (69), Expect = 4.3
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 5/53 (9%)
Query: 934 AARLRR-----IYASPDDVDLFPGGLSEQPVAVIVRFRRIYASPDDVDLFPGG 981
A L++ +YA +D GL ++ + + V L G
Sbjct: 113 LAELQKATGAPVYARAPAIDTLKRGLPDRTDPNFEVAEPVAPVANIVTLADDG 165
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure
initiative, NEW YORK SGX research center for structural
genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Length = 282
Score = 30.1 bits (68), Expect = 7.3
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 10/62 (16%)
Query: 1833 QLQEIRK--ATLAKEIKKATLAKVICANMDYP--GEIT------NHLFEEKGRPHSGVDL 1882
L+ I + A ++ + +D P G ++ E+ PHSG+D
Sbjct: 126 DLKRIERELAEQTAAYRRFSPGLPSNLMLDKPVDGPLSSPFGLRRFFNGEERNPHSGLDF 185
Query: 1883 PA 1884
Sbjct: 186 AV 187
>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.51A {Lactobacillus delbrueckii}
Length = 240
Score = 29.6 bits (67), Expect = 8.8
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 19/102 (18%)
Query: 1361 TNHLFEEKG-RPHSGVD---------LPALNIQRARDHGVPSYNEYRALCNLKKAKTWAD 1410
N+ FE+ G R V+ + + RA + S E K +
Sbjct: 26 LNYAFEQTGHRHDFTVEDIKNFFGSGVVVA-VTRALAYEAGSSRESLVAFGTKDEQIPEA 84
Query: 1411 LSREIPDEVIARFRRIYA--SPDDVDLFPGGLSERPVAALLD 1450
+++ + V+ F+ YA FPG + L+
Sbjct: 85 VTQTEVNRVLEVFKPYYADHCQIKTGPFPG------ILDLMK 120
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.423
Gapped
Lambda K H
0.267 0.0545 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 33,495,152
Number of extensions: 2194813
Number of successful extensions: 4335
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4221
Number of HSP's successfully gapped: 112
Length of query: 2042
Length of database: 6,701,793
Length adjustment: 108
Effective length of query: 1934
Effective length of database: 3,686,325
Effective search space: 7129352550
Effective search space used: 7129352550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.2 bits)