RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12195
(254 letters)
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 41.5 bits (96), Expect = 4e-05
Identities = 17/119 (14%), Positives = 35/119 (29%), Gaps = 4/119 (3%)
Query: 127 EHKATSLSIQCNMCSLVLDSKESLVTHISQTHTLMFTCRRCPSTFLNSATLSKHVKMEHN 186
++ + I ++ L L + + L+ ++ +
Sbjct: 12 KYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKA 71
Query: 187 SKSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQCPYCITDFSEDKNLIQHIVSVHLG 245
+ C C F LK+H H CP C +F+ + + H+ H
Sbjct: 72 ISQFVCPLCLMPFSSSVSLKQHIRYTE----HTKVCPVCKKEFTSTDSALDHVCKKHNI 126
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 39.8 bits (94), Expect = 4e-05
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 188 KSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQCPYCITDFSEDKNLIQHIVSVHLG 245
K Y+C C F + +K H Q H ++V + CP+C T + +L H+ H
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY 71
Score = 37.1 bits (87), Expect = 4e-04
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 162 FTCRRCPSTFLNSATLSKHVKMEH--NSKSYQCNECPESFERLNKLKRHKFQAH 213
+ C C + F S T+ H+ +H N + C C R + L H + H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 40.3 bits (93), Expect = 7e-05
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 136 QCNMCSLVLDSKESLVTHISQTHTLMFTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNEC 195
QC +C+ L S +H C C F + +H + + K C EC
Sbjct: 18 QCRLCNAKLSSLLEQGSHERLCRNA-AVCPYCSLRFFSPELKQEH-ESKCEYKKLTCLEC 75
Query: 196 PESFERLNKLKRHKFQAHN 214
+F+ + RH+ + HN
Sbjct: 76 MRTFKSSFSIWRHQVEVHN 94
Score = 36.4 bits (83), Expect = 0.002
Identities = 24/93 (25%), Positives = 32/93 (34%), Gaps = 4/93 (4%)
Query: 106 SCVPCDVLFHNKATLYKHLYLEHKATSLSIQCNMCSLVLDSKESLVTHISQTHTLMFTCR 165
C C+ + H L A C CSL S E H S+ TC
Sbjct: 18 QCRLCNAKLSSLLEQGSHERLCRNAA----VCPYCSLRFFSPELKQEHESKCEYKKLTCL 73
Query: 166 RCPSTFLNSATLSKHVKMEHNSKSYQCNECPES 198
C TF +S ++ +H HN + P S
Sbjct: 74 ECMRTFKSSFSIWRHQVEVHNQNNMAPTSGPSS 106
Score = 33.7 bits (76), Expect = 0.012
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 162 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQ 221
+ CR C + + H ++ N+ C C F + H+ + ++
Sbjct: 17 YQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEHESKC---EYKKLT 71
Query: 222 CPYCITDFSEDKNLIQHIVSVH 243
C C+ F ++ +H V VH
Sbjct: 72 CLECMRTFKSSFSIWRHQVEVH 93
Score = 31.4 bits (70), Expect = 0.072
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 179 KHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQCPYCITDFSEDKNLIQH 238
N + YQC C L + H+ N +V CPYC F + +H
Sbjct: 6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAV----CPYCSLRFFSPELKQEH 61
Score = 29.9 bits (66), Expect = 0.27
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 6/85 (7%)
Query: 75 IYECNQCKEKTNDMTTMLNHYSVKHYMDINMSCVPCDVLFHNKATLYKHLYLEHKATSLS 134
+Y+C C K + + +H + C C + F + +H E K
Sbjct: 16 VYQCRLCNAKLSSLLEQGSHERLCRN---AAVCPYCSLRFFSPELKQEH---ESKCEYKK 69
Query: 135 IQCNMCSLVLDSKESLVTHISQTHT 159
+ C C S S+ H + H
Sbjct: 70 LTCLECMRTFKSSFSIWRHQVEVHN 94
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 38.6 bits (91), Expect = 2e-04
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Query: 136 QCNMCSLVLDSKESLVTHISQTHT--LMFTCRRCPSTFLNSATLSKHVKMEHNSKSYQCN 193
QC +C + L THI +THT F C C F S +H + + +
Sbjct: 5 QCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKRH-RDIQHILPILED 62
Query: 194 ECPESFERLNKLKRHK 209
+ E + L+
Sbjct: 63 KVEELLSKNYHLENEV 78
Score = 33.6 bits (78), Expect = 0.008
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 162 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 209
F CR C F S L+ H++ K + C+ C F R ++ KRH+
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51
Score = 27.8 bits (63), Expect = 1.1
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K +QC C +F R + L H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHI 23
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 39.0 bits (90), Expect = 2e-04
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 6/86 (6%)
Query: 134 SIQCNMCSLVLDSKESLVTHISQTHTLMFTCRRC------PSTFLNSATLSKHVKMEHNS 187
+C CS D+ L H+++T + +L + E
Sbjct: 19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQ 78
Query: 188 KSYQCNECPESFERLNKLKRHKFQAH 213
K +C C SFE L L H +
Sbjct: 79 KVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 36.3 bits (83), Expect = 0.002
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 162 FTCRRCPSTFLNSATLSKHVKMEH-----NSKSYQCNECPESFERLNKLKRHKFQAHNDS 216
F C+ C + + L+ H+ N ++ N S R L + +
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQK 79
Query: 217 VHQIQCPYCITDFSEDKNLIQHIVSVHLGKE 247
V + C YC F ++L H++ ++
Sbjct: 80 VLK--CMYCGHSFESLQDLSVHMIKTKHYQK 108
Score = 31.3 bits (70), Expect = 0.10
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 2/89 (2%)
Query: 17 RCETCTRNYESLESLTTHL-SFKHSNQFLMKCTNCNVLVPRDEILPHLSIQHCQGTTPSI 75
RC+ C+ Y++L LT H+ H + N N L + +
Sbjct: 21 RCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKV 80
Query: 76 YECNQCKEKTNDMTTMLNH-YSVKHYMDI 103
+C C + + H KHY +
Sbjct: 81 LKCMYCGHSFESLQDLSVHMIKTKHYQKV 109
Score = 27.8 bits (61), Expect = 1.9
Identities = 7/68 (10%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 174 SATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAH---NDSVHQIQCPYCITDFS 230
++ + + + ++C +C +++ L +L H + +D+
Sbjct: 4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKP 63
Query: 231 EDKNLIQH 238
++L++
Sbjct: 64 RKRSLLEM 71
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 37.8 bits (88), Expect = 3e-04
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 162 FTCRRCPSTFLNSATLSKHVKM---EHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVH 218
C C T A+L+ H + + + C C + FE+ + + H+ ++H +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 219 QIQCP 223
Q
Sbjct: 68 APQES 72
Score = 35.1 bits (81), Expect = 0.003
Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 6/70 (8%)
Query: 136 QCNMCSLVLDSKESLVTHISQTHTLM-----FTCRRCPSTFLNSATLSKHVKMEHNSKSY 190
QC +C K SL H + H F C C F +++ H H +
Sbjct: 9 QCEICGFTCRQKASLNWHQ-RKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 191 QCNECPESFE 200
E
Sbjct: 68 APQESSGPSS 77
Score = 28.5 bits (64), Expect = 0.54
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 188 KSYQCNECPESFERLNKLKRHKFQAHNDSV--HQIQCPYCITDFSEDKNLIQHIVSVH 243
QC C + + L H+ + H ++V + C +C F + ++ H H
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQ-RKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 37.3 bits (86), Expect = 4e-04
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 173 NSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQCPYCITDFSED 232
+S + K K+ +S +C++C F R + L R K C C D ++
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRK---------TPMCEKCRKDSCQE 52
Query: 233 KNLIQHIVSVHLGKEGTAPA 252
L + GK+ + P+
Sbjct: 53 AALNKD-EGNESGKKTSGPS 71
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 36.0 bits (84), Expect = 9e-04
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 188 KSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQCPYCITDFSEDKNLIQHI 239
+Y+C C + ++ RH +H +V CP+C +F+ N+ H+
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Score = 36.0 bits (84), Expect = 0.001
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 162 FTCRRCPSTFLNSATLSKHVKMEH--NSKSYQCNECPESFERLNKLKRHK 209
+ C+ C + + + +H H N K Y C C + F R + + H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.001
Identities = 37/199 (18%), Positives = 60/199 (30%), Gaps = 72/199 (36%)
Query: 99 HYMDINMSCVPCDVLFHNKATLYKHLYLEHKATSLSIQCNMCSLVL---DSKESLVTHIS 155
HY V +L L +L K + Q + ++ + DS ES +
Sbjct: 248 HY------VVTAKLLGFTPGELRSYL----KGATGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 156 QTHTLMFTC-RRC----PSTFLNSATLSKHVKMEHNSKSY-----------------QCN 193
+ T++F RC P+T L + L ++ S + N
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357
Query: 194 EC-----------------------PESFERLN-KLKRHKFQAHNDSVHQIQCPYCITDF 229
P+S LN L++ K + D Q + P F
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD---QSRIP-----F 409
Query: 230 SEDKNLIQHI---VSV--H 243
SE K + V+ H
Sbjct: 410 SERKLKFSNRFLPVASPFH 428
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.001
Identities = 48/335 (14%), Positives = 92/335 (27%), Gaps = 142/335 (42%)
Query: 16 IRCET--CTRNYESLESL----TTHLSFKH---------SNQFLMKCTNCNVLVPRDEIL 60
+ C+ TR + + L TTH+S H L+K +C R + L
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC-----RPQDL 318
Query: 61 PHLSIQHCQGTTPSIYECNQCKEKTNDMTTMLNHY--------------SV--------- 97
P + P + E D +++ S+
Sbjct: 319 PR---EVLTTN-PRR--LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 98 KHYMDINM----SCVPCDVL------------------FHNKATLYKH----------LY 125
K + +++ + +P +L H + + K +Y
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 126 LE-----------HKA--TSLSIQCNMCS--LVLDSKES-----LVTHISQTH----TLM 161
LE H++ +I S L+ + + H+ +
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 162 FTCRRCPSTFLNSATLSKHVKMEHNS-------------------KSYQCNECPESFERL 202
F FL+ L + K+ H+S K Y C+ P+ +
Sbjct: 493 F-----RMVFLDFRFLEQ--KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545
Query: 203 NKLKRHKFQAHNDSVHQIQCPYCITDFSEDKNLIQ 237
N + F + I Y +L++
Sbjct: 546 NAIL--DF-LPKIEENLICSKYT--------DLLR 569
Score = 31.7 bits (71), Expect = 0.23
Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 22/140 (15%)
Query: 80 QCKEKTNDMTTMLNHYSVKHYMDINMSCVPCDV---LFHNKATLYKHL--YLEHKATSLS 134
C + + + +D N D + ++ L L+ K
Sbjct: 191 NCNSPETVLEMLQKLL---YQIDPNW-TSRSDHSSNIKLRIHSIQAELRRLLKSK----- 241
Query: 135 IQCNMCSLVLD---SKESLVTHISQTHTLMFTCRRCPSTFLNSATLSKHVKMEHNSKSYQ 191
C LVL + ++ L+ T + + FL++AT + H+ ++H+S +
Sbjct: 242 -PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT-TTHISLDHHSMTL- 298
Query: 192 CNECPESFERLNKLKRHKFQ 211
E L K + Q
Sbjct: 299 --TPDEVKSLLLKYLDCRPQ 316
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 37.9 bits (87), Expect = 0.003
Identities = 12/92 (13%), Positives = 22/92 (23%), Gaps = 4/92 (4%)
Query: 127 EHKATSLSIQCNMCSLVLDSKESLVTH---ISQTHTLMFTCRRCPSTFLNSATLSKHVKM 183
+ KA + + S+ V + +Q +
Sbjct: 115 KSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPT 174
Query: 184 EHNSKSYQCNECPESFERLNKLKRHKFQAHND 215
+ YQC+ C L H +H
Sbjct: 175 ASSGHGYQCHVCSAVLFSPLDLDAHV-ASHGL 205
Score = 31.4 bits (70), Expect = 0.36
Identities = 11/79 (13%), Positives = 20/79 (25%), Gaps = 5/79 (6%)
Query: 126 LEHKATSLSIQCNMCSLVLDSKESLVTHISQTHTLMFTCRRCPSTFLNSATLSKHVKMEH 185
K S I ++V + + + + C C + + L HV
Sbjct: 145 SNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHG 204
Query: 186 NSK-----SYQCNECPESF 199
S + F
Sbjct: 205 LHGNMTLTSSEIQRHITEF 223
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 35.6 bits (83), Expect = 0.004
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 136 QCNMCSLVLDSKESLVTH--ISQTHTLM--FTCRRCPSTFLNSATLSKHVKMEHNSKSYQ 191
+C C KE+L+ H + + FTC C TF L H+ Y+
Sbjct: 37 ECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYK 96
Query: 192 CNECPESFERLNKLKRHKFQAH 213
C+ C + F + L+ H + H
Sbjct: 97 CSSCSQQFMQKKDLQSHMIKLH 118
Score = 34.0 bits (79), Expect = 0.011
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 16/119 (13%)
Query: 136 QCNMCSLVLDSKESLVTHISQTHT--LMFTCRRCPSTFLNSATLSKHVKME--HNS-KSY 190
+C C SK L H ++ HT F C +C + L +H + S + +
Sbjct: 9 ECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 191 QCNECPESFERLNKLKRHKFQAHNDSVHQIQCPY----CITDFSEDKNLIQHIVSVHLG 245
C+ C E+F R +L+ H H + PY C F + K+L H++ +H G
Sbjct: 68 TCSVCQETFRRRMELRLHM------VSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 32.5 bits (75), Expect = 0.036
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 7/81 (8%)
Query: 162 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQ 221
C C FL+ L H + K ++C +C + + R L H+ + +++ +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHE---ARNCMNRSE 64
Query: 222 CPY----CITDFSEDKNLIQH 238
+ C F L H
Sbjct: 65 QVFTCSVCQETFRRRMELRLH 85
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 34.8 bits (81), Expect = 0.005
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 162 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQ-I 220
C C F + L++H K Y C C F+R +++ H ++H+ SV +
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHV-RSHDGSVGKPY 66
Query: 221 QCPYCITDFSEDKNLIQHIVSVHLG 245
C C FS +L HI VH G
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 25.9 bits (58), Expect = 5.2
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
C C + F + L RHK
Sbjct: 6 SGVACEICGKIFRDVYHLNRHK 27
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 35.2 bits (82), Expect = 0.005
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Query: 162 FTCRR--CPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQ 219
C C F +++ + KH+ H + + C EC ++F +KLKRH+ VH
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHT-HGPRVHVCAECGKAFVESSKLKRHQ------LVHT 58
Query: 220 IQCPY-CITD-----FSEDKNLIQH 238
+ P+ C + FS D NL H
Sbjct: 59 GEKPFQCTFEGCGKRFSLDFNLRTH 83
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 34.5 bits (78), Expect = 0.006
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 135 IQCNMCSLVL-DSKESLVTHISQTHTL--MFTCRRCPSTFLNSATLSKHVKMEHNSK 188
C C++V + L H+ L C+ C F + A L+ H EH++K
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 33.7 bits (78), Expect = 0.009
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 162 FTCRRCPSTFLNSATLSKHVKM----EHNSKSYQCNECPESFERLNKLKRHK 209
+ C C TF L H K ++ C++C ++F R N + RH
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 29.4 bits (67), Expect = 0.26
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 7/70 (10%)
Query: 136 QCNMCSLVLDSKESLVTHISQTHT------LMFTCRRCPSTFLNSATLSKHVKMEHNSKS 189
C+ C K+ L H + + F C +C TF T+++H
Sbjct: 17 ACSHCDKTFRQKQLLDMH-FKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG 75
Query: 190 YQCNECPESF 199
+ S
Sbjct: 76 VEGENSGPSS 85
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 33.3 bits (75), Expect = 0.016
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 134 SIQCNMCSLVL-DSKESLVTHISQTHTLMFTCRRCPSTFLNSATLSKHVKMEHNSK 188
S+ C C V + E L H+ MFTC C + A + HV HNS
Sbjct: 34 SVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSL 89
Score = 28.7 bits (63), Expect = 0.60
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 1 MSKYQQHLEEHKVVIIRCETCTRNYESLESLTTHLSFKHSNQ 42
+ ++H+E K + C C + SL + H+ H++
Sbjct: 48 IEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSL 89
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 32.4 bits (75), Expect = 0.016
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 162 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 209
+ C RC ++F L+ H + K Y+CN C F R LK H
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT 65
Score = 29.0 bits (66), Expect = 0.35
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 174 SATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQCPY----CITDF 229
H M H+ K Y+C+ C SF L HK +VH + PY C F
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHK------TVHTGEKPYRCNICGAQF 55
Query: 230 SEDKNLIQH 238
+ NL H
Sbjct: 56 NRPANLKTH 64
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 34.2 bits (79), Expect = 0.016
Identities = 19/87 (21%), Positives = 28/87 (32%), Gaps = 14/87 (16%)
Query: 136 QCNMCSLVLDSKESLVTHISQTHT-----------LMFTCRRCPSTFLNSATLSKHVKME 184
C + LVTH++ C R +F L H+++
Sbjct: 27 PKKSCDRTFSTMHELVTHVT-MEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 185 HNSKSYQCN--ECPESFERLNKLKRHK 209
K + C C + F R LK HK
Sbjct: 86 TGEKPFPCPFPGCGKIFARSENLKIHK 112
Score = 32.6 bits (75), Expect = 0.048
Identities = 19/74 (25%), Positives = 23/74 (31%), Gaps = 9/74 (12%)
Query: 145 DSKESLVTHISQTHTLMFTCRRCPSTFLNSATLSKHVKMEHNSKSYQ---------CNEC 195
K+ L L + C TF L HV MEH Q C
Sbjct: 9 PIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPRE 68
Query: 196 PESFERLNKLKRHK 209
+SF+ KL H
Sbjct: 69 GKSFKAKYKLVNHI 82
Score = 32.3 bits (74), Expect = 0.067
Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 7/81 (8%)
Query: 166 RCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAH-------NDSVH 218
S+ ++ S C +F +++L H H N +
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 219 QIQCPYCITDFSEDKNLIQHI 239
+CP F L+ HI
Sbjct: 62 WEECPREGKSFKAKYKLVNHI 82
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 32.4 bits (75), Expect = 0.021
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 162 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQ 221
F C+ C +F S+TLS H+ + +++ Y C C + F + + +K+H +H +
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT------FIHTGE 55
Query: 222 CPY----CITDFSEDKNLIQH 238
P+ C FS+ NLI H
Sbjct: 56 KPHKCQVCGKAFSQSSNLITH 76
Score = 30.1 bits (69), Expect = 0.13
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 162 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 209
+ C+ C F + + KH + K ++C C ++F + + L H
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHS 77
Score = 25.5 bits (57), Expect = 5.3
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 10/54 (18%)
Query: 189 SYQCNECPESFERLNKLKRHKFQAHNDSVHQ----IQCPYCITDFSEDKNLIQH 238
S+ C C +SF+R + L H +H C YC F + ++ +H
Sbjct: 1 SFDCKICGKSFKRSSTLSTHL------LIHSDTRPYPCQYCGKRFHQKSDMKKH 48
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 32.1 bits (74), Expect = 0.022
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 162 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 209
+ C C F S+ L +H ++ K Y+C EC ++F + + L H+
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
Score = 28.2 bits (64), Expect = 0.60
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
Query: 177 LSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQCPY----CITDFSED 232
S + K Y C EC ++F R + L +H+ VH + PY C FS++
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQ------RVHTGEKPYKCLECGKAFSQN 55
Query: 233 KNLIQH 238
LI H
Sbjct: 56 SGLINH 61
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 32.4 bits (75), Expect = 0.029
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 136 QCNMCSLVLDSKESLVTHISQTHT--LMFTCRRCPSTFLNSATLSKHVKMEHNSKSYQCN 193
+C +C K+ L TH+ + HT + C+ C +S++L+KH+++ + + ++C
Sbjct: 10 KCEVCGKCFSRKDKLKTHM-RCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 194 ECPESFERLNKLKRHK 209
CP + ++L H
Sbjct: 69 ICPYASRNSSQLTVHL 84
Score = 26.6 bits (60), Expect = 3.4
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Query: 188 KSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQCPY----CITDFSEDKNLIQH 238
++C C + F R +KLK H H PY C ++ +L +H
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHM------RCHTGVKPYKCKTCDYAAADSSSLNKH 55
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 30.8 bits (69), Expect = 0.044
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 162 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 209
+ C C + L KH++ + + Y C C SF+ L +H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 31.3 bits (72), Expect = 0.049
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 162 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 209
+ C C +F +S+ LSKH + K Y+C+EC ++F + + L H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHH 66
Score = 28.2 bits (64), Expect = 0.67
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 174 SATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQCPY----CITDF 229
S + + + + Y+C+EC +SF + L +H+ H + PY C F
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHR------RTHTGEKPYKCDECGKAF 56
Query: 230 SEDKNLIQH 238
+ +LI H
Sbjct: 57 IQRSHLIGH 65
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 32.6 bits (75), Expect = 0.051
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 136 QCNMCSLVLDSKESLVTHISQTHT---------LMFTCRRCPSTFLNSATLSKHVKMEHN 186
+ + CS DS+E LV HI+ H C R F L H++
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 187 SKSYQCN--ECPESFERLNKLKRHK 209
K ++C C +S+ RL LK H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHL 89
Score = 31.0 bits (71), Expect = 0.19
Identities = 11/56 (19%), Positives = 16/56 (28%), Gaps = 8/56 (14%)
Query: 162 FTCRRCPSTFLNSATLSKHVKMEH---NSKSYQCNEC-----PESFERLNKLKRHK 209
C F + L H+ EH K + C+ F+ L H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM 59
Score = 29.1 bits (66), Expect = 0.74
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 12/61 (19%)
Query: 188 KSYQCNECPESFERLNKLKRHKFQAHNDSVH---------QIQCPYCITDFSEDKNLIQH 238
+ + C + F+ +L H H +H C + F L+ H
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEH---IHGERKEFVCHWGGCSRELRPFKAQYMLVVH 58
Query: 239 I 239
+
Sbjct: 59 M 59
Score = 27.6 bits (62), Expect = 2.7
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 148 ESLVTHISQTHTLM--FTC--RRCPSTFLNSATLSKHVKMEH-NSKSYQCN--ECPESFE 200
E+L TH+ ++HT + C C F N++ +KH H N K Y C C + +
Sbjct: 83 ENLKTHL-RSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYT 141
Query: 201 RLNKLKRHK 209
+ L++H
Sbjct: 142 DPSSLRKHV 150
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 31.3 bits (72), Expect = 0.057
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 12/83 (14%)
Query: 162 FTCRR--CPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVH- 218
+ C C F S +L++H+++ K +QC C +F R + L H H
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI------RTHT 58
Query: 219 ---QIQCPYCITDFSEDKNLIQH 238
C C F+ +H
Sbjct: 59 GEKPFACDICGRKFARSDERKRH 81
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 31.7 bits (71), Expect = 0.068
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 162 FTCRRCPSTFLNSATLSKHVKMEHN----SKSYQCNECPESFERLNKLKRHKFQAH 213
+ C+ C + + HV EH + SY C EC +R + L H + H
Sbjct: 19 YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYH 74
Score = 30.1 bits (67), Expect = 0.21
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Query: 179 KHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQI--QCPYCITDFSEDKNLI 236
+ + + Y+C C LN H H + V C C L
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS 67
Query: 237 QHIVSVHLG 245
+H + H G
Sbjct: 68 EHNLKYHPG 76
Score = 27.8 bits (61), Expect = 1.4
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 76 YECNQCKEKTNDMTTMLNHYSVKH---YMDINMSCVPCDVLFHNKATLYKHLYLEHKATS 132
YEC C +T D+ H +H ++ + CV C+ L L +H H
Sbjct: 19 YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEE 78
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 29.9 bits (68), Expect = 0.086
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 162 FTCRRCPSTFLNSATLSKHVKMEHNS-KSYQCNECPESF 199
+ C+ C F L+ H+K H S + ++C
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 26.0 bits (58), Expect = 2.4
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 188 KSYQCNECPESFERLNKLKRHKFQAH 213
K Y C C + F R + L H Q H
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVH 36
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 30.9 bits (71), Expect = 0.10
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 162 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 209
F C+ C F S L H + + + Y C+ C ++F R + L+ H+
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR 65
Score = 30.1 bits (69), Expect = 0.19
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 162 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 209
+TC C F L H + K ++C EC + F + L HK
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHK 93
Score = 26.2 bits (59), Expect = 5.4
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 174 SATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 209
S+ S K + C C F + L H+
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHE 37
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 30.4 bits (69), Expect = 0.11
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 146 SKESLVTHISQTHTLMFTCRR--CPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLN 203
+ + + + C C F S L++H+++ K +QC C +F R +
Sbjct: 4 HPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSD 63
Query: 204 KLKRHK 209
L H
Sbjct: 64 HLTTHI 69
Score = 27.3 bits (61), Expect = 1.1
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 188 KSYQCN--ECPESFERLNKLKRHKFQAHNDSVHQIQCPYCITDFSEDKNLIQHI 239
+ Y C C F R ++L RH + H QC C+ +FS +L HI
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHI-RIHT-GQKPFQCRICMRNFSRSDHLTTHI 69
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 29.8 bits (68), Expect = 0.14
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 162 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 209
C C + + A L H ++ + ++CN C ++ + L +H
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM 57
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 29.4 bits (67), Expect = 0.16
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 16/65 (24%)
Query: 188 KSYQCNECPESFERLNKLKRHKFQAHNDSVHQI-------QCPYCITDFSEDKNLIQHIV 240
+S+ C C +F R LKRH ++ C C F+ LI+H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH---------YRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ 51
Query: 241 SVHLG 245
+H G
Sbjct: 52 KIHSG 56
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 29.8 bits (68), Expect = 0.17
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 147 KESLVTHISQTHT--LMFTC--RRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESF 199
++ L H H F+C C +F L +H+K+ +++ Y C S
Sbjct: 22 RQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 28.7 bits (65), Expect = 0.37
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 162 FTCRR--CPSTFLNSATLSKHVKMEHN-SKSYQCNE--CPESFERLNKLKRHK 209
C C F N L+ H K +H KS+ C E C +SF LK H
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 29.9 bits (68), Expect = 0.20
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 167 CPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 209
C F S L++H + +K +QC C SF R + L H
Sbjct: 53 CDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95
Score = 27.2 bits (61), Expect = 2.3
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 167 CPSTFLNSATLSKHVKMEHNSKSYQCN--ECPESFERLNKLKRHKFQAHNDSVHQIQCPY 224
C + S+ L H++ K Y+C C F R ++L RH + H QC
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHY-RKHT-GAKPFQCGV 80
Query: 225 CITDFSEDKNLIQHI 239
C FS +L H+
Sbjct: 81 CNRSFSRSDHLALHM 95
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 28.3 bits (62), Expect = 0.33
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 189 SYQCNECPESFERLNKLKRHKFQAHND 215
++ CNEC F LKRH Q H+D
Sbjct: 10 AFFCNECDCRFSEEASLKRHTLQTHSD 36
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 27.9 bits (63), Expect = 0.34
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
KSY CNEC ++F R+ L RH+
Sbjct: 11 KSYNCNECGKAFTRIFHLTRHQ 32
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 29.4 bits (67), Expect = 0.40
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 162 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCN--ECPESFERLNKLKRHK 209
F C+ C F S L H + K + C C + F R ++L RH
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHH 116
Score = 29.4 bits (67), Expect = 0.52
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 167 CPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 209
C F S L +H + K +QC C F R + LK H
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHT 86
Score = 26.3 bits (59), Expect = 4.5
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 20/89 (22%)
Query: 162 FTC--RRCPSTFLNSATLSKHVKMEHNSKSYQCN--ECPESFERLNKLKRHKFQAHNDSV 217
F C C + + L H + K YQC+ +C F R ++LKRH+
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQ-------- 58
Query: 218 HQI-------QCPYCITDFSEDKNLIQHI 239
+ QC C FS +L H
Sbjct: 59 -RRHTGVKPFQCKTCQRKFSRSDHLKTHT 86
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 30.6 bits (68), Expect = 0.53
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 186 NSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQCPYCI 226
N SY CN C F ++ L H H D + I
Sbjct: 113 NPSSYVCNVCNARFSTMSALSEHLRSDHRDDASTLLATPMI 153
Score = 30.6 bits (68), Expect = 0.57
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 146 SKESLVTHISQTHTLMFTCRRCPSTFLNSATLSKHVKMEHNS------KSYQCNECPESF 199
S + + + C C + F + LS+H++ +H + N SF
Sbjct: 101 SDPQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRSDHRDDASTLLATPMINNAIRSF 160
Score = 29.4 bits (65), Expect = 1.5
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 17 RCETCTRNYESLESLTTHLSFKHS 40
C C + ++ +L+ HL H
Sbjct: 118 VCNVCNARFSTMSALSEHLRSDHR 141
Score = 29.4 bits (65), Expect = 1.5
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 136 QCNMCSLVLDSKESLVTHISQTHTLMFTCRRCPSTFLNSATLSKHVK 182
CN+C+ + +L H+ H ST L + ++ ++
Sbjct: 118 VCNVCNARFSTMSALSEHLRSDHRDD------ASTLLATPMINNAIR 158
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 28.9 bits (66), Expect = 0.61
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 10/77 (12%)
Query: 167 CPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQCPY-- 224
C +F + + +H+ M + Y C C + F+ + L H +H PY
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM------KIHTGIKPYEC 68
Query: 225 --CITDFSEDKNLIQHI 239
C F + +H+
Sbjct: 69 NICAKRFMWRDSFHRHV 85
Score = 25.5 bits (57), Expect = 9.1
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 136 QCNMCSLVLDSKESLVTHISQTHTLM--FTCRRCPSTFLNSATLSKHVKMEHN-SKSYQC 192
C +C K LV H+ + HT + + C C F+ + +HV + +KSY+
Sbjct: 39 GCGVCGKKFKMKHHLVGHM-KIHTGIKPYECNICAKRFMWRDSFHRHV---TSCTKSYEA 94
Query: 193 NECPESF 199
+ ++
Sbjct: 95 AKAEQNT 101
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 29.3 bits (67), Expect = 0.74
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 162 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 209
+ C C +F A L H + K Y+C EC +SF R + L H+
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQ 153
Score = 28.6 bits (65), Expect = 1.5
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 16/76 (21%)
Query: 170 TFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQI-------QC 222
+ S++ +E K Y C EC +SF R + L H + +C
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH---------QRTHTGEKPYKC 52
Query: 223 PYCITDFSEDKNLIQH 238
P C FS+ K+L +H
Sbjct: 53 PECGKSFSDKKDLTRH 68
Score = 28.6 bits (65), Expect = 1.5
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 162 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 209
+ C C +F L H + K Y+C EC +SF R + L H+
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQ 181
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.79
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
+ Y CNEC ++F R + L H
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHL 32
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 26.7 bits (59), Expect = 0.79
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 188 KSYQCNECPESFERLNKLKRHKFQAHNDSV 217
K+Y C C +F R + L RH + H+ ++
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL 30
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 26.7 bits (60), Expect = 0.94
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 188 KSYQCNECPESFERLNKLKRH 208
K Y C C F L LK H
Sbjct: 10 KPYPCEICGTRFRHLQTLKSH 30
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 26.7 bits (60), Expect = 0.99
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y+C C F ++ L+ H
Sbjct: 10 KPYKCETCGARFVQVAHLRAHV 31
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 26.2 bits (57), Expect = 1.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 162 FTCRRCPSTFLNSATLSKHVK 182
F C CP F+ S LSKH+K
Sbjct: 3 FACPACPKRFMRSDALSKHIK 23
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 27.2 bits (61), Expect = 1.6
Identities = 8/47 (17%), Positives = 16/47 (34%)
Query: 167 CPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAH 213
C F + L +H K+ + + C + +H + H
Sbjct: 39 CDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 25.7 bits (57), Expect = 1.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 188 KSYQCNECPESFERLNKLKRH 208
+S+ C C +F R LKRH
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH 21
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 25.6 bits (56), Expect = 1.9
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 162 FTCRRCPSTFLNSATLSKHVKMEHNSK 188
F C CP F+ S L+ H+ + N K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 26.1 bits (57), Expect = 2.0
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 188 KSYQCNECPESFERLNKLKRHKF 210
K C C + F + L RHK
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKL 33
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 27.1 bits (61), Expect = 2.0
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 167 CPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 209
C F S L++H + + +QC +C +F R + L H
Sbjct: 43 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHM 85
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 26.0 bits (56), Expect = 2.1
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 186 NSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQ 219
K Y C C F+R +++ H ++H+ SV +
Sbjct: 7 GEKPYSCPVCGLRFKRKDRMSYH-VRSHDGSVGK 39
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 26.0 bits (57), Expect = 2.1
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
++C++C F + N L +H+
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHE 32
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 26.9 bits (59), Expect = 2.4
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 10/67 (14%)
Query: 136 QCNMCSLVLDSKESLVTHISQTHT----------LMFTCRRCPSTFLNSATLSKHVKMEH 185
C + LVTH++ H C R +F L H+++
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86
Query: 186 NSKSYQC 192
KS
Sbjct: 87 GEKSGPS 93
Score = 26.9 bits (59), Expect = 2.7
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 7/64 (10%)
Query: 183 MEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQ-------CPYCITDFSEDKNL 235
++ S C +F +++L H H Q CP F L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 236 IQHI 239
+ HI
Sbjct: 79 VNHI 82
Score = 26.5 bits (58), Expect = 3.3
Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 9/73 (12%)
Query: 145 DSKESLVTHISQTHTLMFTCRRCPSTFLNSATLSKHVKMEH----NSKSYQC--NECP-- 196
K+ L L + C TF L HV MEH ++ C ECP
Sbjct: 9 PIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPRE 68
Query: 197 -ESFERLNKLKRH 208
+SF+ KL H
Sbjct: 69 GKSFKAKYKLVNH 81
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 25.6 bits (57), Expect = 2.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 188 KSYQCNECPESFERLNKLKRH 208
KS+QC+EC F + L +H
Sbjct: 11 KSHQCHECGRGFTLKSHLNQH 31
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 2.5
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 5/28 (17%)
Query: 117 KATLYK-----HLYLEHKATSLSIQCNM 139
K L K LY + A +L+I+ M
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATM 46
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 25.6 bits (57), Expect = 2.6
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
KS+ C+EC ++F ++ L+ H+
Sbjct: 11 KSHTCDECGKNFCYISALRIHQ 32
>1h7d_A Aminolevulinic acid synthase 2, erythroid; acyltransferase, ALAS,
presequence, structure; NMR {Mus musculus} SCOP:
j.88.1.1 PDB: 1h7j_A
Length = 49
Score = 25.8 bits (56), Expect = 2.6
Identities = 8/39 (20%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 130 ATSLSIQCNMCSLVLDSKESLVTHISQTHTLMFTCRRCP 168
A ++ ++ C ++ L+ +++T+ +F+ RCP
Sbjct: 3 AAAMLLRS--CPVLSQGPTGLLGKVAKTYQFLFSIGRCP 39
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 27.9 bits (61), Expect = 2.7
Identities = 4/49 (8%), Positives = 14/49 (28%)
Query: 160 LMFTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRH 208
++ + + + H + K Q + + + L+
Sbjct: 179 RVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGP 227
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 2.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y C EC +SF R L +H+
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHE 32
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 26.2 bits (57), Expect = 2.8
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 7/56 (12%)
Query: 110 CDVLFHNKATLYKHLYLEH-------KATSLSIQCNMCSLVLDSKESLVTHISQTH 158
C + L +HL +H L+ C + D S+V HI+ H
Sbjct: 9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH 64
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 25.2 bits (56), Expect = 2.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 188 KSYQCNECPESFERLNKLKRH 208
+ Y+C EC +SF + L H
Sbjct: 9 RVYECQECGKSFRQKGSLTLH 29
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 2.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K ++C+ C +SF ++L RH
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHS 32
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 2.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y+C+EC ++F R L H+
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHR 32
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding
domain, structural genomics, struc genomics consortium,
SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Length = 318
Score = 28.1 bits (63), Expect = 3.0
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 39 HSNQFLMKCTNCNVLVPRDEILPHLSIQHC--QGTTPSIYECNQCK 82
H N F+ +C C RD ++ + ++ T C+
Sbjct: 133 HGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACR 178
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 3.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y CNEC +SF + + L RH+
Sbjct: 11 KPYICNECGKSFIQKSHLNRHR 32
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 3.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y+C+EC + F R + L RH+
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQ 32
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 25.4 bits (56), Expect = 3.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 188 KSYQCNECPESFERLNKLKRH 208
K Y C EC E+F N+L +H
Sbjct: 9 KPYSCAECKETFSDNNRLVQH 29
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 3.6
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K YQCNEC ++F + +KL RH+
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQ 32
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 3.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y+CNEC ++F + L H+
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQ 32
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 3.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y+CNEC + F + + L RH+
Sbjct: 11 KPYKCNECGKVFTQNSHLARHR 32
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 25.2 bits (56), Expect = 3.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 188 KSYQCNECPESFERLNKLKRHKFQAH 213
K Y+C EC ++F + L RH H
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYH 36
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 27.6 bits (62), Expect = 4.0
Identities = 6/52 (11%), Positives = 15/52 (28%), Gaps = 11/52 (21%)
Query: 207 RHKFQAHNDSVHQIQ-----------CPYCITDFSEDKNLIQHIVSVHLGKE 247
H+FQ H + H+++ + E ++ +
Sbjct: 195 GHEFQGHGKTAHEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGS 246
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 4.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y+CNEC + F + + L RH+
Sbjct: 11 KPYKCNECGKVFTQNSHLARHR 32
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics,
PSI, protein structure initiative; 1.80A {Sulfolobus
solfataricus P2} SCOP: b.40.4.15 PDB: 3irb_A
Length = 145
Score = 26.8 bits (59), Expect = 4.2
Identities = 4/21 (19%), Positives = 12/21 (57%)
Query: 1 MSKYQQHLEEHKVVIIRCETC 21
++ L+++K++ +C C
Sbjct: 33 GEQFFNGLKQNKIIGSKCSKC 53
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 24.9 bits (54), Expect = 4.3
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 162 FTCRRCPSTFLNSATLSKHVKMEHNSKS 189
F C CP F+ S LSKH+ +
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGE 30
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 4.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y+CNEC + F + L RH+
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQ 32
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin
remodeling, DNA binding protein/DNA complex; HET: DNA;
NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB:
1yuj_A*
Length = 54
Score = 25.3 bits (54), Expect = 4.4
Identities = 12/53 (22%), Positives = 22/53 (41%)
Query: 196 PESFERLNKLKRHKFQAHNDSVHQIQCPYCITDFSEDKNLIQHIVSVHLGKEG 248
P++ + K ++ + S CP C + +NL +H+ H K G
Sbjct: 1 PKAKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG 53
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 4.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K YQC+EC +SF +L +H
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHW 32
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 4.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y+CNEC + F + + L RH+
Sbjct: 11 KPYKCNECGKVFTQNSHLARHR 32
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 25.2 bits (54), Expect = 4.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
KS+QC EC E F + L H+
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQ 32
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.9 bits (55), Expect = 4.6
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K +QC EC +F L +H
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHL 32
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 24.8 bits (55), Expect = 4.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y+CNEC + F R ++L +H+
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQ 32
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 24.8 bits (55), Expect = 4.8
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 188 KSYQCNECPESFERLNKLKRH 208
Y+C+EC ++F R ++L H
Sbjct: 9 NPYECSECGKAFNRKDQLISH 29
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 4.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y C+ C ++F +L RH+
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQ 32
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 24.8 bits (55), Expect = 5.0
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y CNEC ++F + L H
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHT 32
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 24.8 bits (55), Expect = 5.2
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K+++C EC F + + L+ H+
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQ 32
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 5.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y+CNEC + F + + L H
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHW 32
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 5.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y CNEC ++F + L H+
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQ 32
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 24.8 bits (55), Expect = 5.8
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y+C EC + F L H
Sbjct: 11 KPYKCEECGKGFICRRDLYTHH 32
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 5.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y+CNEC + F + + L H+
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQ 32
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 5.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y CNEC ++F + + L H+
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQ 32
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 5.9
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y+CNEC ++F + +KL RH+
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQ 32
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.7 bits (55), Expect = 5.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y+CNEC + F + + L RH+
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHR 32
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 6.2
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y+C C ++F + L +H
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHH 32
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 24.5 bits (54), Expect = 6.3
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y+C++C ++F + L H
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHI 31
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 6.4
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 188 KSYQCNECPESFERLNKLKRH 208
K ++C EC +S+ + L +H
Sbjct: 11 KPFKCGECGKSYNQRVHLTQH 31
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 6.5
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K + C +C ++F L +H+
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHR 32
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 24.4 bits (54), Expect = 6.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y+CNEC ++F + L H+
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQ 32
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 6.5
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K ++C EC ++F + L H
Sbjct: 11 KPFKCKECGKAFRQNIHLASHL 32
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 6.6
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y+C+ C +SF + L H+
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQ 32
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 27.0 bits (60), Expect = 6.7
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 4/44 (9%)
Query: 39 HSNQFLMKCTNCNVLVPRDEILPHLSIQHCQGTTPSIYECNQCK 82
H + C C + P L+ + +C+ C
Sbjct: 131 HGSFAHCHCIGCGKVYPPQVFKSKLA----EHPIKDFVKCDVCG 170
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 27.1 bits (59), Expect = 6.8
Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 6/57 (10%)
Query: 139 MCSLVLDSKESLVTHISQTHTLMFTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNEC 195
+ + + L+ CRRC + ++ V + ++CN C
Sbjct: 206 VIRPYQHLYDDIDPPPLNEDGLIVRCRRC------RSYMNPFVTFIEQGRRWRCNFC 256
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 6.8
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y C EC ++F ++L+ H+
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQ 32
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 24.4 bits (54), Expect = 6.9
Identities = 5/30 (16%), Positives = 14/30 (46%)
Query: 179 KHVKMEHNSKSYQCNECPESFERLNKLKRH 208
H + ++C++C + F + + +H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQH 31
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 6.9
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 188 KSYQCNECPESFERLNKLKRH 208
K Y+C EC + ++R L H
Sbjct: 11 KPYKCVECGKGYKRRLDLDFH 31
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 6.9
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 188 KSYQCNECPESFERLNKLKRH 208
K +QC EC + F + + L H
Sbjct: 11 KPFQCEECGKRFTQNSHLHSH 31
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Length = 355
Score = 27.0 bits (60), Expect = 6.9
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 39 HSNQFLMKCTNCNVLVPRDEILPHLSIQHC--QGTTPSIYECNQCK 82
H N F+ +C C RD ++ + ++ T C+
Sbjct: 133 HGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACR 178
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.5 bits (54), Expect = 7.0
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y+C EC ++F + +H+
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQ 32
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 7.1
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 188 KSYQCNECPESFERLNKLKRH 208
+ ++CNEC +SF + L +H
Sbjct: 11 RPHKCNECGKSFIQSAHLIQH 31
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 24.4 bits (54), Expect = 7.2
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 188 KSYQCNECPESFERLNKLKRH 208
K ++C EC + F ++ H
Sbjct: 11 KPFKCEECGKGFYTNSQCYSH 31
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 7.6
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y+C+ C + F + + L+ H+
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQ 32
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 7.6
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 188 KSYQCNECPESFERLNKLKRH 208
+ ++CNEC + F R + L H
Sbjct: 11 RPFKCNECGKGFGRRSHLAGH 31
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 7.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y+C EC ++F ++ L +HK
Sbjct: 11 KPYECKECRKTFIQIGHLNQHK 32
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin,
acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ;
1.85A {Saccharomyces cerevisiae}
Length = 354
Score = 26.8 bits (59), Expect = 7.7
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 7/49 (14%)
Query: 39 HSNQFLMKCTNCNVLVPRDEILPHLSIQHCQGTTPSIYECNQCKEKTND 87
H + C C+ +P + I + + C C +K +
Sbjct: 156 HGSFATATCVTCHWNLPGERIFNKIR-------NLELPLCPYCYKKRRE 197
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 26.4 bits (59), Expect = 8.0
Identities = 9/49 (18%), Positives = 17/49 (34%)
Query: 167 CPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHND 215
C F + L +H K+ + + C + +H + H D
Sbjct: 142 CDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQD 190
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 24.0 bits (53), Expect = 8.6
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 179 KHVKMEHNSKSYQCNECPESFERLNKLKRH 208
K Y+C EC ++F + L +H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQH 31
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 8.6
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 162 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNE 194
+ C+ C F A L++H K K +
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS 45
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 26.5 bits (58), Expect = 9.1
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 4/44 (9%)
Query: 39 HSNQFLMKCTNCNVLVPRDEILPHLSIQHCQGTTPSIYECNQCK 82
H + C C + P L+ + +C+ C
Sbjct: 139 HGSFAHCHCIGCGKVYPPQVFKSKLA----EHPIKDFVKCDVCG 178
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.1 bits (53), Expect = 9.3
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 188 KSYQCNECPESFERLNKLKRH 208
K +C EC ++F ++L H
Sbjct: 11 KPCKCTECGKAFCWKSQLIMH 31
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 9.4
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y CN C ++F L +H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHL 32
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.130 0.405
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,448,671
Number of extensions: 179488
Number of successful extensions: 1117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 985
Number of HSP's successfully gapped: 308
Length of query: 254
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 163
Effective length of database: 4,160,982
Effective search space: 678240066
Effective search space used: 678240066
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.0 bits)