RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12195
(254 letters)
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 30.8 bits (69), Expect = 0.019
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 167 CPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 209
C +F + + +H+ M + Y C C + F+ + L H
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 50
Score = 27.3 bits (60), Expect = 0.26
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 188 KSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQCPYCITDFSEDKNLIQH 238
K Y C +C +SF ++ RH + + + C C F +L+ H
Sbjct: 2 KLYPC-QCGKSFTHKSQRDRH--MSMHLGLRPYGCGVCGKKFKMKHHLVGH 49
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 27.6 bits (62), Expect = 0.16
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 188 KSYQCNECPESFERLNKLKRHKFQAHNDSV 217
K Y+C C F + +K H Q H ++V
Sbjct: 7 KPYECYICHARFTQSGTMKMHILQKHTENV 36
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 27.3 bits (61), Expect = 0.23
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 188 KSYQCNECPESFERLNKLKRHKFQAH 213
K Y C C + F R + L H Q H
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIKQVH 29
Score = 23.8 bits (52), Expect = 3.8
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 162 FTCRRCPSTFLNSATLSKHVKMEH-NSKSYQCN 193
+ C+ C F L+ H+K H + + ++C
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 26.8 bits (60), Expect = 0.24
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
+S+ C C +F R LKRH
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY 22
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 26.8 bits (60), Expect = 0.28
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K +QC C +F R + L H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHI 23
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 26.4 bits (59), Expect = 0.33
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y C EC ++F R + L +H+
Sbjct: 6 KPYGCVECGKAFSRSSILVQHQ 27
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 26.6 bits (59), Expect = 0.40
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 188 KSYQCNECPESFERLNKLKRHKFQAHNDS 216
K Y C+ C ++F + L H + H+ +
Sbjct: 7 KPYACSHCDKTFRQKQLLDMHFKRYHDPN 35
>d2gnra1 b.40.4.15 (A:8-144) Hypothetical protein SSO2064
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 137
Score = 28.0 bits (62), Expect = 0.61
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 1 MSKYQQHLEEHKVVIIRCETCTRNY 25
++ L+++K++ +C C R +
Sbjct: 25 GEQFFNGLKQNKIIGSKCSKCGRIF 49
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 25.8 bits (57), Expect = 0.66
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K + C ECP+ F R + L +H
Sbjct: 1 KKFACPECPKRFMRSDHLSKHI 22
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 25.1 bits (55), Expect = 1.4
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 179 KHVKMEHNSKSYQCNECPESFERLNKLKRHK 209
+ + + Y+C+EC +SF + L +H+
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHR 32
>d1rwja_ a.138.1.1 (A:) Cytochrome c7 (cytochrome c551.5, PpcA)
{Geobacter sulfurreducens, GSU1996 [TaxId: 35554]}
Length = 81
Score = 26.0 bits (57), Expect = 1.6
Identities = 9/38 (23%), Positives = 12/38 (31%)
Query: 158 HTLMFTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNEC 195
H M+ C C + +K M K C C
Sbjct: 26 HLGMYKCNECHTKLFAYKAGAKRFTMADMDKGKSCGAC 63
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 24.5 bits (54), Expect = 1.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K Y+C EC ++F + + L H+
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQ 22
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 26
Score = 23.8 bits (51), Expect = 2.6
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 222 CPYCITDFSEDKNLIQHIVSVH 243
CP+C +F+ N+ H+ +H
Sbjct: 4 CPFCFKEFTRKDNMTAHVKIIH 25
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 23.6 bits (51), Expect = 4.8
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
+ + C C +F RH
Sbjct: 6 RPFVCRICLSAFTTKANCARHL 27
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 23.2 bits (50), Expect = 5.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 188 KSYQCNECPESFERLNKLKRHK 209
K +QC +C SF R + L H+
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHR 31
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 22.9 bits (49), Expect = 6.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 188 KSYQCNECPESFERLNKLKRH 208
K + C+ C F R ++ KRH
Sbjct: 2 KPFACDICGRKFARSDERKRH 22
>d1qu9a_ d.79.1.1 (A:) Conserved 'hypothetical' protein YjgF
{Escherichia coli [TaxId: 562]}
Length = 127
Score = 24.7 bits (53), Expect = 6.8
Identities = 9/78 (11%), Positives = 26/78 (33%)
Query: 177 LSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQCPYCITDFSEDKNLI 236
S + + + + ++ + L+ +K A ++ + D ++ +
Sbjct: 28 TSGQIPVNPKTGEVPADVAAQARQSLDNVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVN 87
Query: 237 QHIVSVHLGKEGTAPART 254
+ T PAR+
Sbjct: 88 ATYEAFFTEHNATFPARS 105
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 22.3 bits (47), Expect = 9.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 192 CNECPESFERLNKLKRH 208
C EC ++F +KLKRH
Sbjct: 5 CAECGKAFVESSKLKRH 21
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.130 0.405
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 885,079
Number of extensions: 40036
Number of successful extensions: 254
Number of sequences better than 10.0: 1
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 71
Length of query: 254
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 171
Effective length of database: 1,268,006
Effective search space: 216829026
Effective search space used: 216829026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.1 bits)