RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12196
(150 letters)
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 41.1 bits (95), Expect = 1e-05
Identities = 17/119 (14%), Positives = 35/119 (29%), Gaps = 4/119 (3%)
Query: 23 EHKATSLSIQCNMCSLVLDSKESLVTHISQTHTLMFTCRRCPSTFLNSATLSKHVKMEHN 82
++ + I ++ L L + + L+ ++ +
Sbjct: 12 KYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKA 71
Query: 83 SKSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQCPYCITDFSEDKNLIQHIVSVHLG 141
+ C C F LK+H H CP C +F+ + + H+ H
Sbjct: 72 ISQFVCPLCLMPFSSSVSLKQHIRYTE----HTKVCPVCKKEFTSTDSALDHVCKKHNI 126
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 39.8 bits (94), Expect = 1e-05
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 84 KSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQCPYCITDFSEDKNLIQHIVSVHLG 141
K Y+C C F + +K H Q H ++V + CP+C T + +L H+ H
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY 71
Score = 37.1 bits (87), Expect = 2e-04
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 58 FTCRRCPSTFLNSATLSKHVKMEH--NSKSYQCNECPESFERLNKLKRHKFQAH 109
+ C C + F S T+ H+ +H N + C C R + L H + H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 39.9 bits (92), Expect = 4e-05
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 32 QCNMCSLVLDSKESLVTHISQTHTLMFTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNEC 91
QC +C+ L S +H C C F + +H + + K C EC
Sbjct: 18 QCRLCNAKLSSLLEQGSHERLCRNA-AVCPYCSLRFFSPELKQEH-ESKCEYKKLTCLEC 75
Query: 92 PESFERLNKLKRHKFQAHN 110
+F+ + RH+ + HN
Sbjct: 76 MRTFKSSFSIWRHQVEVHN 94
Score = 36.0 bits (82), Expect = 9e-04
Identities = 24/93 (25%), Positives = 32/93 (34%), Gaps = 4/93 (4%)
Query: 2 SCVPCDVLFHNKATLYKHLYLEHKATSLSIQCNMCSLVLDSKESLVTHISQTHTLMFTCR 61
C C+ + H L A C CSL S E H S+ TC
Sbjct: 18 QCRLCNAKLSSLLEQGSHERLCRNAA----VCPYCSLRFFSPELKQEHESKCEYKKLTCL 73
Query: 62 RCPSTFLNSATLSKHVKMEHNSKSYQCNECPES 94
C TF +S ++ +H HN + P S
Sbjct: 74 ECMRTFKSSFSIWRHQVEVHNQNNMAPTSGPSS 106
Score = 33.3 bits (75), Expect = 0.007
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 58 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQ 117
+ CR C + + H ++ N+ C C F + H+ + ++
Sbjct: 17 YQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEHESKC---EYKKLT 71
Query: 118 CPYCITDFSEDKNLIQHIVSVH 139
C C+ F ++ +H V VH
Sbjct: 72 CLECMRTFKSSFSIWRHQVEVH 93
Score = 31.4 bits (70), Expect = 0.041
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 75 KHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQCPYCITDFSEDKNLIQH 134
N + YQC C L + H+ N +V CPYC F + +H
Sbjct: 6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAV----CPYCSLRFFSPELKQEH 61
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 38.6 bits (91), Expect = 6e-05
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Query: 32 QCNMCSLVLDSKESLVTHISQTHT--LMFTCRRCPSTFLNSATLSKHVKMEHNSKSYQCN 89
QC +C + L THI +THT F C C F S +H + + +
Sbjct: 5 QCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKRH-RDIQHILPILED 62
Query: 90 ECPESFERLNKLKRHK 105
+ E + L+
Sbjct: 63 KVEELLSKNYHLENEV 78
Score = 33.6 bits (78), Expect = 0.003
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 58 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 105
F CR C F S L+ H++ K + C+ C F R ++ KRH+
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51
Score = 27.8 bits (63), Expect = 0.54
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K +QC C +F R + L H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHI 23
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 39.0 bits (90), Expect = 9e-05
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 6/86 (6%)
Query: 30 SIQCNMCSLVLDSKESLVTHISQTHTLMFTCRRC------PSTFLNSATLSKHVKMEHNS 83
+C CS D+ L H+++T + +L + E
Sbjct: 19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQ 78
Query: 84 KSYQCNECPESFERLNKLKRHKFQAH 109
K +C C SFE L L H +
Sbjct: 79 KVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 36.3 bits (83), Expect = 8e-04
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 58 FTCRRCPSTFLNSATLSKHVKMEH-----NSKSYQCNECPESFERLNKLKRHKFQAHNDS 112
F C+ C + + L+ H+ N ++ N S R L + +
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQK 79
Query: 113 VHQIQCPYCITDFSEDKNLIQHIVSVHLGKE 143
V + C YC F ++L H++ ++
Sbjct: 80 VLK--CMYCGHSFESLQDLSVHMIKTKHYQK 108
Score = 27.8 bits (61), Expect = 0.89
Identities = 7/68 (10%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 70 SATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAH---NDSVHQIQCPYCITDFS 126
++ + + + ++C +C +++ L +L H + +D+
Sbjct: 4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKP 63
Query: 127 EDKNLIQH 134
++L++
Sbjct: 64 RKRSLLEM 71
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 37.4 bits (87), Expect = 1e-04
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 58 FTCRRCPSTFLNSATLSKHVK---MEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVH 114
C C T A+L+ H + + + C C + FE+ + + H+ ++H +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 115 QIQCP 119
Q
Sbjct: 68 APQES 72
Score = 34.7 bits (80), Expect = 0.001
Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 6/70 (8%)
Query: 32 QCNMCSLVLDSKESLVTHISQTHTLM-----FTCRRCPSTFLNSATLSKHVKMEHNSKSY 86
QC +C K SL H + H F C C F +++ H H +
Sbjct: 9 QCEICGFTCRQKASLNWHQ-RKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 87 QCNECPESFE 96
E
Sbjct: 68 APQESSGPSS 77
Score = 28.1 bits (63), Expect = 0.31
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 84 KSYQCNECPESFERLNKLKRHKFQAHNDSV--HQIQCPYCITDFSEDKNLIQHIVSVH 139
QC C + + L H+ + H ++V + C +C F + ++ H H
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQ-RKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 36.9 bits (85), Expect = 2e-04
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 69 NSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQCPYCITDFSED 128
+S + K K+ +S +C++C F R + L R K C C D ++
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRK---------TPMCEKCRKDSCQE 52
Query: 129 KNLIQHIVSVHLGKEGTAPA 148
L + GK+ + P+
Sbjct: 53 AALNKD-EGNESGKKTSGPS 71
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 36.0 bits (84), Expect = 4e-04
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 84 KSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQCPYCITDFSEDKNLIQHI 135
+Y+C C + ++ RH +H +V CP+C +F+ N+ H+
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Score = 36.0 bits (84), Expect = 4e-04
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 58 FTCRRCPSTFLNSATLSKHVKMEH--NSKSYQCNECPESFERLNKLKRHK 105
+ C+ C + + + +H H N K Y C C + F R + + H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 37.9 bits (87), Expect = 7e-04
Identities = 12/92 (13%), Positives = 22/92 (23%), Gaps = 4/92 (4%)
Query: 23 EHKATSLSIQCNMCSLVLDSKESLVTH---ISQTHTLMFTCRRCPSTFLNSATLSKHVKM 79
+ KA + + S+ V + +Q +
Sbjct: 115 KSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPT 174
Query: 80 EHNSKSYQCNECPESFERLNKLKRHKFQAHND 111
+ YQC+ C L H +H
Sbjct: 175 ASSGHGYQCHVCSAVLFSPLDLDAHV-ASHGL 205
Score = 31.4 bits (70), Expect = 0.12
Identities = 11/79 (13%), Positives = 20/79 (25%), Gaps = 5/79 (6%)
Query: 22 LEHKATSLSIQCNMCSLVLDSKESLVTHISQTHTLMFTCRRCPSTFLNSATLSKHVKMEH 81
K S I ++V + + + + C C + + L HV
Sbjct: 145 SNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHG 204
Query: 82 NSK-----SYQCNECPESF 95
S + F
Sbjct: 205 LHGNMTLTSSEIQRHITEF 223
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 35.6 bits (83), Expect = 0.002
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 32 QCNMCSLVLDSKESLVTH--ISQTHTLM--FTCRRCPSTFLNSATLSKHVKMEHNSKSYQ 87
+C C KE+L+ H + + FTC C TF L H+ Y+
Sbjct: 37 ECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYK 96
Query: 88 CNECPESFERLNKLKRHKFQAH 109
C+ C + F + L+ H + H
Sbjct: 97 CSSCSQQFMQKKDLQSHMIKLH 118
Score = 34.4 bits (80), Expect = 0.004
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 16/119 (13%)
Query: 32 QCNMCSLVLDSKESLVTHISQTHT--LMFTCRRCPSTFLNSATLSKHVKME--HNS-KSY 86
+C C SK L H ++ HT F C +C + L +H + S + +
Sbjct: 9 ECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 87 QCNECPESFERLNKLKRHKFQAHNDSVHQIQCPY----CITDFSEDKNLIQHIVSVHLG 141
C+ C E+F R +L+ H H + PY C F + K+L H++ +H G
Sbjct: 68 TCSVCQETFRRRMELRLHM------VSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 32.9 bits (76), Expect = 0.015
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 7/81 (8%)
Query: 58 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQ 117
C C FL+ L H + K ++C +C + + R L H+ + +++ +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHE---ARNCMNRSE 64
Query: 118 CPY----CITDFSEDKNLIQH 134
+ C F L H
Sbjct: 65 QVFTCSVCQETFRRRMELRLH 85
Score = 25.2 bits (56), Expect = 5.9
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 16/58 (27%)
Query: 84 KSYQCNECPESFERLNKLKRHKFQAHNDSVHQI-------QCPYCITDFSEDKNLIQH 134
+C C + F LK H ++ +CP C + +NL++H
Sbjct: 6 SGVECPTCHKKFLSKYYLKVH---------NRKHTGEKPFECPKCGKCYFRKENLLEH 54
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 34.8 bits (81), Expect = 0.002
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 58 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQ-I 116
C C F + L++H K Y C C F+R +++ H ++H+ SV +
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHV-RSHDGSVGKPY 66
Query: 117 QCPYCITDFSEDKNLIQHIVSVHLG 141
C C FS +L HI VH G
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 25.9 bits (58), Expect = 2.6
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
C C + F + L RHK
Sbjct: 6 SGVACEICGKIFRDVYHLNRHK 27
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 35.2 bits (82), Expect = 0.002
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Query: 58 FTCRR--CPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQ 115
C C F +++ + KH+ H + + C EC ++F +KLKRH+ VH
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHT-HGPRVHVCAECGKAFVESSKLKRHQ------LVHT 58
Query: 116 IQCPY-CITD-----FSEDKNLIQH 134
+ P+ C + FS D NL H
Sbjct: 59 GEKPFQCTFEGCGKRFSLDFNLRTH 83
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.003
Identities = 35/191 (18%), Positives = 58/191 (30%), Gaps = 66/191 (34%)
Query: 3 CVPCDVLFHNKATLYKHLYLEHKATSLSIQCNMCSLVL---DSKESLVTHISQTHTLMFT 59
V +L L +L K + Q + ++ + DS ES + + T++F
Sbjct: 250 VVTAKLLGFTPGELRSYL----KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF 305
Query: 60 C-RRC----PSTFLNSATLSKHVKMEHNSKSY-----------------QCNEC------ 91
RC P+T L + L ++ S + N
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 92 -----------------PESFERLN-KLKRHKFQAHNDSVHQIQCPYCITDFSEDKNLIQ 133
P+S LN L++ K + D Q + P FSE K
Sbjct: 366 VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD---QSRIP-----FSERKLKFS 417
Query: 134 HI---VSV--H 139
+ V+ H
Sbjct: 418 NRFLPVASPFH 428
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 34.5 bits (78), Expect = 0.003
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 31 IQCNMCSLVL-DSKESLVTHISQTHTL--MFTCRRCPSTFLNSATLSKHVKMEHNSK 84
C C++V + L H+ L C+ C F + A L+ H EH++K
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
Score = 24.9 bits (53), Expect = 7.1
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 58 FTCRRCPSTFLNSAT-LSKHVKMEHNSKS-YQCNECPESFERLNKLKRHKFQAHN 110
C C + L KH+++ + +C C + F+ L H H+
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 33.7 bits (78), Expect = 0.004
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 58 FTCRRCPSTFLNSATLSKHVKM----EHNSKSYQCNECPESFERLNKLKRHK 105
+ C C TF L H K ++ C++C ++F R N + RH
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 29.4 bits (67), Expect = 0.12
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 7/70 (10%)
Query: 32 QCNMCSLVLDSKESLVTHISQTHT------LMFTCRRCPSTFLNSATLSKHVKMEHNSKS 85
C+ C K+ L H + + F C +C TF T+++H
Sbjct: 17 ACSHCDKTFRQKQLLDMH-FKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG 75
Query: 86 YQCNECPESF 95
+ S
Sbjct: 76 VEGENSGPSS 85
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 34.2 bits (79), Expect = 0.006
Identities = 19/87 (21%), Positives = 28/87 (32%), Gaps = 14/87 (16%)
Query: 32 QCNMCSLVLDSKESLVTHISQTHT-----------LMFTCRRCPSTFLNSATLSKHVKME 80
C + LVTH++ C R +F L H+++
Sbjct: 27 PKKSCDRTFSTMHELVTHVT-MEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 81 HNSKSYQCN--ECPESFERLNKLKRHK 105
K + C C + F R LK HK
Sbjct: 86 TGEKPFPCPFPGCGKIFARSENLKIHK 112
Score = 32.6 bits (75), Expect = 0.019
Identities = 19/74 (25%), Positives = 23/74 (31%), Gaps = 9/74 (12%)
Query: 41 DSKESLVTHISQTHTLMFTCRRCPSTFLNSATLSKHVKMEHNSKSYQ---------CNEC 91
K+ L L + C TF L HV MEH Q C
Sbjct: 9 PIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPRE 68
Query: 92 PESFERLNKLKRHK 105
+SF+ KL H
Sbjct: 69 GKSFKAKYKLVNHI 82
Score = 32.3 bits (74), Expect = 0.027
Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 7/81 (8%)
Query: 62 RCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAH-------NDSVH 114
S+ ++ S C +F +++L H H N +
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 115 QIQCPYCITDFSEDKNLIQHI 135
+CP F L+ HI
Sbjct: 62 WEECPREGKSFKAKYKLVNHI 82
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 32.8 bits (76), Expect = 0.007
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 58 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 105
+ C RC ++F L+ H + K Y+CN C F R LK H
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT 65
Score = 29.0 bits (66), Expect = 0.17
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 70 SATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQCPY----CITDF 125
H M H+ K Y+C+ C SF L HK +VH + PY C F
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHK------TVHTGEKPYRCNICGAQF 55
Query: 126 SEDKNLIQH 134
+ NL H
Sbjct: 56 NRPANLKTH 64
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 32.9 bits (74), Expect = 0.008
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 30 SIQCNMCSLVL-DSKESLVTHISQTHTLMFTCRRCPSTFLNSATLSKHVKMEHNSK 84
S+ C C V + E L H+ MFTC C + A + HV HNS
Sbjct: 34 SVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSL 89
Score = 24.4 bits (52), Expect = 9.9
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 58 FTCRRCPSTFLNS-ATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHND 111
+C C + + L KH++ + + C+ C + L +K H HN
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHMEN-CKQEMFTCHHCGKQLRSLAGMKYHVMANHNS 88
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 32.1 bits (74), Expect = 0.010
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 58 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 105
+ C C F S+ L +H ++ K Y+C EC ++F + + L H+
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
Score = 28.2 bits (64), Expect = 0.30
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
Query: 73 LSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQCPY----CITDFSED 128
S + K Y C EC ++F R + L +H+ VH + PY C FS++
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQ------RVHTGEKPYKCLECGKAFSQN 55
Query: 129 KNLIQH 134
LI H
Sbjct: 56 SGLINH 61
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 32.4 bits (75), Expect = 0.010
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 58 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQ 117
F C+ C +F S+TLS H+ + +++ Y C C + F + + +K+H +H +
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT------FIHTGE 55
Query: 118 CPY----CITDFSEDKNLIQH 134
P+ C FS+ NLI H
Sbjct: 56 KPHKCQVCGKAFSQSSNLITH 76
Score = 30.1 bits (69), Expect = 0.064
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 58 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 105
+ C+ C F + + KH + K ++C C ++F + + L H
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHS 77
Score = 25.8 bits (58), Expect = 2.8
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 10/54 (18%)
Query: 85 SYQCNECPESFERLNKLKRHKFQAHNDSVHQ----IQCPYCITDFSEDKNLIQH 134
S+ C C +SF+R + L H +H C YC F + ++ +H
Sbjct: 1 SFDCKICGKSFKRSSTLSTHL------LIHSDTRPYPCQYCGKRFHQKSDMKKH 48
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 32.4 bits (75), Expect = 0.013
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 32 QCNMCSLVLDSKESLVTHISQTHT--LMFTCRRCPSTFLNSATLSKHVKMEHNSKSYQCN 89
+C +C K+ L TH+ + HT + C+ C +S++L+KH+++ + + ++C
Sbjct: 10 KCEVCGKCFSRKDKLKTHM-RCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 90 ECPESFERLNKLKRHK 105
CP + ++L H
Sbjct: 69 ICPYASRNSSQLTVHL 84
Score = 26.6 bits (60), Expect = 1.6
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Query: 84 KSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQCPY----CITDFSEDKNLIQH 134
++C C + F R +KLK H H PY C ++ +L +H
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHM------RCHTGVKPYKCKTCDYAAADSSSLNKH 55
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 31.2 bits (70), Expect = 0.017
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 58 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 105
+ C C + L KH++ + + Y C C SF+ L +H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 32.6 bits (75), Expect = 0.019
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 32 QCNMCSLVLDSKESLVTHISQTHT---------LMFTCRRCPSTFLNSATLSKHVKMEHN 82
+ + CS DS+E LV HI+ H C R F L H++
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 83 SKSYQCN--ECPESFERLNKLKRHK 105
K ++C C +S+ RL LK H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHL 89
Score = 31.0 bits (71), Expect = 0.074
Identities = 11/56 (19%), Positives = 16/56 (28%), Gaps = 8/56 (14%)
Query: 58 FTCRRCPSTFLNSATLSKHVKMEH---NSKSYQCNEC-----PESFERLNKLKRHK 105
C F + L H+ EH K + C+ F+ L H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM 59
Score = 29.5 bits (67), Expect = 0.30
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 12/61 (19%)
Query: 84 KSYQCNECPESFERLNKLKRHKFQAHNDSVH---------QIQCPYCITDFSEDKNLIQH 134
+ + C + F+ +L H H +H C + F L+ H
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEH---IHGERKEFVCHWGGCSRELRPFKAQYMLVVH 58
Query: 135 I 135
+
Sbjct: 59 M 59
Score = 27.6 bits (62), Expect = 1.1
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 44 ESLVTHISQTHTLM--FTC--RRCPSTFLNSATLSKHVKMEH-NSKSYQCN--ECPESFE 96
E+L TH+ ++HT + C C F N++ +KH H N K Y C C + +
Sbjct: 83 ENLKTHL-RSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYT 141
Query: 97 RLNKLKRHK 105
+ L++H
Sbjct: 142 DPSSLRKHV 150
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 31.3 bits (72), Expect = 0.024
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 58 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 105
+ C C +F +S+ LSKH + K Y+C+EC ++F + + L H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHH 66
Score = 28.2 bits (64), Expect = 0.34
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 70 SATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQCPY----CITDF 125
S + + + + Y+C+EC +SF + L +H+ H + PY C F
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHR------RTHTGEKPYKCDECGKAF 56
Query: 126 SEDKNLIQH 134
+ +LI H
Sbjct: 57 IQRSHLIGH 65
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 31.7 bits (73), Expect = 0.024
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 12/83 (14%)
Query: 58 FTCRR--CPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVH- 114
+ C C F S +L++H+++ K +QC C +F R + L H H
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI------RTHT 58
Query: 115 ---QIQCPYCITDFSEDKNLIQH 134
C C F+ +H
Sbjct: 59 GEKPFACDICGRKFARSDERKRH 81
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 31.7 bits (71), Expect = 0.028
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 58 FTCRRCPSTFLNSATLSKHVKMEHN----SKSYQCNECPESFERLNKLKRHKFQAH 109
+ C+ C + + HV EH + SY C EC +R + L H + H
Sbjct: 19 YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYH 74
Score = 30.1 bits (67), Expect = 0.091
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Query: 75 KHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQI--QCPYCITDFSEDKNLI 132
+ + + Y+C C LN H H + V C C L
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS 67
Query: 133 QHIVSVHLG 141
+H + H G
Sbjct: 68 EHNLKYHPG 76
Score = 27.8 bits (61), Expect = 0.73
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 2 SCVPCDVLFHNKATLYKHLYLEHK--ATSLSIQCNMCSLVLDSKESLVTHISQTHT 55
C C + H+ EH + S C C+ + ++L H + H
Sbjct: 20 ECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHP 75
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 30.9 bits (71), Expect = 0.047
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 58 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 105
F C+ C F S L H + + + Y C+ C ++F R + L+ H+
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR 65
Score = 30.1 bits (69), Expect = 0.087
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 58 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 105
+TC C F L H + K ++C EC + F + L HK
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHK 93
Score = 26.2 bits (59), Expect = 2.7
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 70 SATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 105
S+ S K + C C F + L H+
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHE 37
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 29.9 bits (68), Expect = 0.052
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 58 FTCRRCPSTFLNSATLSKHVKMEHNS-KSYQCNECPESF 95
+ C+ C F L+ H+K H S + ++C
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 26.0 bits (58), Expect = 1.5
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 84 KSYQCNECPESFERLNKLKRHKFQAH 109
K Y C C + F R + L H Q H
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVH 36
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 30.0 bits (68), Expect = 0.063
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 42 SKESLVTHISQTHTLMFTCRR--CPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLN 99
+ + + + C C F S L++H+++ K +QC C +F R +
Sbjct: 4 HPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSD 63
Query: 100 KLKRHK 105
L H
Sbjct: 64 HLTTHI 69
Score = 27.3 bits (61), Expect = 0.68
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 84 KSYQCN--ECPESFERLNKLKRHKFQAHNDSVHQIQCPYCITDFSEDKNLIQHI 135
+ Y C C F R ++L RH + H QC C+ +FS +L HI
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHI-RIHT-GQKPFQCRICMRNFSRSDHLTTHI 69
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 29.8 bits (68), Expect = 0.071
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 58 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 105
C C + + A L H ++ + ++CN C ++ + L +H
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM 57
Score = 24.0 bits (53), Expect = 9.6
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Query: 84 KSYQCNECPESFERLNKLKRHKFQAHNDSVHQ----IQCPYCITDFSEDKNLIQH 134
+C+EC S L+ H+ +H +C YC D + NL +H
Sbjct: 8 HPEKCSECSYSCSSKAALRIHE------RIHCTDRPFKCNYCSFDTKQPSNLSKH 56
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 29.4 bits (67), Expect = 0.088
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 16/65 (24%)
Query: 84 KSYQCNECPESFERLNKLKRHKFQAHNDSVHQI-------QCPYCITDFSEDKNLIQHIV 136
+S+ C C +F R LKRH ++ C C F+ LI+H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH---------YRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ 51
Query: 137 SVHLG 141
+H G
Sbjct: 52 KIHSG 56
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 29.8 bits (68), Expect = 0.090
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 43 KESLVTHISQTHT--LMFTC--RRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESF 95
++ L H H F+C C +F L +H+K+ +++ Y C S
Sbjct: 22 RQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 28.7 bits (65), Expect = 0.21
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 58 FTCRR--CPSTFLNSATLSKHVKMEHN-SKSYQCNE--CPESFERLNKLKRHK 105
C C F N L+ H K +H KS+ C E C +SF LK H
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 29.9 bits (68), Expect = 0.11
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 63 CPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 105
C F S L++H + +K +QC C SF R + L H
Sbjct: 53 CDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95
Score = 26.8 bits (60), Expect = 1.5
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 63 CPSTFLNSATLSKHVKMEHNSKSYQCN--ECPESFERLNKLKRHKFQAHNDSVHQIQCPY 120
C + S+ L H++ K Y+C C F R ++L RH + H QC
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHY-RKHT-GAKPFQCGV 80
Query: 121 CITDFSEDKNLIQHI 135
C FS +L H+
Sbjct: 81 CNRSFSRSDHLALHM 95
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 29.4 bits (67), Expect = 0.18
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 58 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCN--ECPESFERLNKLKRHK 105
F C+ C F S L H + K + C C + F R ++L RH
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHH 116
Score = 29.4 bits (67), Expect = 0.24
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 63 CPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 105
C F S L +H + K +QC C F R + LK H
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHT 86
Score = 26.7 bits (60), Expect = 2.1
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 20/89 (22%)
Query: 58 FTC--RRCPSTFLNSATLSKHVKMEHNSKSYQCN--ECPESFERLNKLKRHKFQAHNDSV 113
F C C + + L H + K YQC+ +C F R ++LKRH+
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQ-------- 58
Query: 114 HQI-------QCPYCITDFSEDKNLIQHI 135
+ QC C FS +L H
Sbjct: 59 -RRHTGVKPFQCKTCQRKFSRSDHLKTHT 86
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 30.6 bits (68), Expect = 0.18
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 82 NSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQCPYCI 122
N SY CN C F ++ L H H D + I
Sbjct: 113 NPSSYVCNVCNARFSTMSALSEHLRSDHRDDASTLLATPMI 153
Score = 30.6 bits (68), Expect = 0.19
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 42 SKESLVTHISQTHTLMFTCRRCPSTFLNSATLSKHVKMEHNS------KSYQCNECPESF 95
S + + + C C + F + LS+H++ +H + N SF
Sbjct: 101 SDPQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRSDHRDDASTLLATPMINNAIRSF 160
Score = 29.4 bits (65), Expect = 0.53
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 32 QCNMCSLVLDSKESLVTHISQTHTLMFTCRRCPSTFLNSATLSKHVK 78
CN+C+ + +L H+ H ST L + ++ ++
Sbjct: 118 VCNVCNARFSTMSALSEHLRSDHRDD------ASTLLATPMINNAIR 158
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 28.3 bits (64), Expect = 0.18
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
KSY CNEC ++F R+ L RH+
Sbjct: 11 KSYNCNECGKAFTRIFHLTRHQ 32
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 27.9 bits (61), Expect = 0.24
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 85 SYQCNECPESFERLNKLKRHKFQAHND 111
++ CNEC F LKRH Q H+D
Sbjct: 10 AFFCNECDCRFSEEASLKRHTLQTHSD 36
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 28.9 bits (66), Expect = 0.29
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 10/77 (12%)
Query: 63 CPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQCPY-- 120
C +F + + +H+ M + Y C C + F+ + L H +H PY
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM------KIHTGIKPYEC 68
Query: 121 --CITDFSEDKNLIQHI 135
C F + +H+
Sbjct: 69 NICAKRFMWRDSFHRHV 85
Score = 25.5 bits (57), Expect = 4.5
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 32 QCNMCSLVLDSKESLVTHISQTHTLM--FTCRRCPSTFLNSATLSKHVKMEHN-SKSYQC 88
C +C K LV H+ + HT + + C C F+ + +HV + +KSY+
Sbjct: 39 GCGVCGKKFKMKHHLVGHM-KIHTGIKPYECNICAKRFMWRDSFHRHV---TSCTKSYEA 94
Query: 89 NECPESF 95
+ ++
Sbjct: 95 AKAEQNT 101
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 29.3 bits (67), Expect = 0.29
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 58 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 105
+ C C +F A L H + K Y+C EC +SF R + L H+
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQ 153
Score = 29.3 bits (67), Expect = 0.36
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 58 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 105
+ C C +F S L++H + K Y+C EC +SF L RH+
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQ 69
Score = 28.6 bits (65), Expect = 0.59
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 16/76 (21%)
Query: 66 TFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQI-------QC 118
+ S++ +E K Y C EC +SF R + L H + +C
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH---------QRTHTGEKPYKC 52
Query: 119 PYCITDFSEDKNLIQH 134
P C FS+ K+L +H
Sbjct: 53 PECGKSFSDKKDLTRH 68
Score = 28.6 bits (65), Expect = 0.60
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 58 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 105
+ C C +F L H + K Y+C EC +SF R + L H+
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQ 181
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.37
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 36 CSLVLD---SKESLVTHISQTHTLMFTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECP 92
C LVL + ++ L+ T + + FL++AT + H+ ++H+S +
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT-TTHISLDHHSMTL---TPD 301
Query: 93 ESFERLNKLKRHKFQ 107
E L K + Q
Sbjct: 302 EVKSLLLKYLDCRPQ 316
Score = 26.0 bits (56), Expect = 7.4
Identities = 26/177 (14%), Positives = 49/177 (27%), Gaps = 71/177 (40%)
Query: 10 FHNKATLYKH----------LYLE-----------HKA--TSLSIQCNMCS--LVLDSKE 44
H + + K +YLE H++ +I S L+ +
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 45 S-----LVTHISQTH----TLMFTCRRCPSTFLNSATLSKHVKMEHNS------------ 83
+ H+ +F FL+ L + K+ H+S
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLF-----RMVFLDFRFLEQ--KIRHDSTAWNASGSILNT 523
Query: 84 -------KSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQCPYCITDFSEDKNLIQ 133
K Y C+ P+ +N + F + I Y +L++
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAIL--DF-LPKIEENLICSKYT--------DLLR 569
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.44
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
+ Y CNEC ++F R + L H
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHL 32
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 26.7 bits (60), Expect = 0.50
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
K Y C C F L LK H
Sbjct: 10 KPYPCEICGTRFRHLQTLKSH 30
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 26.7 bits (60), Expect = 0.52
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y+C C F ++ L+ H
Sbjct: 10 KPYKCETCGARFVQVAHLRAHV 31
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 26.4 bits (58), Expect = 0.59
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 84 KSYQCNECPESFERLNKLKRHKFQAHNDSV 113
K+Y C C +F R + L RH + H+ ++
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL 30
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 27.2 bits (61), Expect = 0.87
Identities = 8/47 (17%), Positives = 16/47 (34%)
Query: 63 CPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAH 109
C F + L +H K+ + + C + +H + H
Sbjct: 39 CDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 28.2 bits (62), Expect = 0.95
Identities = 4/49 (8%), Positives = 14/49 (28%)
Query: 56 LMFTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRH 104
++ + + + H + K Q + + + L+
Sbjct: 179 RVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGP 227
Score = 26.3 bits (57), Expect = 4.8
Identities = 2/28 (7%), Positives = 6/28 (21%)
Query: 58 FTCRRCPSTFLNSATLSKHVKMEHNSKS 85
+ N L + + +
Sbjct: 209 LQREKSEQVLDNPEDLRGPIHLSVLRQG 236
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 25.8 bits (56), Expect = 1.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 58 FTCRRCPSTFLNSATLSKHVK 78
F C CP F+ S LSKH+K
Sbjct: 3 FACPACPKRFMRSDALSKHIK 23
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 26.7 bits (60), Expect = 1.2
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 63 CPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 105
C F S L++H + + +QC +C +F R + L H
Sbjct: 43 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHM 85
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 26.6 bits (58), Expect = 1.2
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 6 CDVLFHNKATLYKHLYLEH-----KATSLSIQC--NMCSLVLDSKESLVTHISQTH 54
C + L +HL +H K + C C + D S+V HI+ H
Sbjct: 9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH 64
Score = 23.9 bits (51), Expect = 9.2
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 89 NECPESFERLNKLKRHKFQAH-----NDSVHQIQC--PYCITDFSEDKNLIQHIVSVH 139
ECPES L L+RH + H + + C C + +++ HI + H
Sbjct: 7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH 64
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 1.2
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 5/28 (17%)
Query: 13 KATLYK-----HLYLEHKATSLSIQCNM 35
K L K LY + A +L+I+ M
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATM 46
Score = 26.8 bits (58), Expect = 2.4
Identities = 6/22 (27%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 128 DKNLIQHI-VSVHLGKEGTAPA 148
+K ++ + S+ L + +APA
Sbjct: 18 EKQALKKLQASLKLYADDSAPA 39
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 25.4 bits (56), Expect = 1.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
+S+ C C +F R LKRH
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH 21
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 26.9 bits (59), Expect = 1.3
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 10/67 (14%)
Query: 32 QCNMCSLVLDSKESLVTHISQTHT----------LMFTCRRCPSTFLNSATLSKHVKMEH 81
C + LVTH++ H C R +F L H+++
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86
Query: 82 NSKSYQC 88
KS
Sbjct: 87 GEKSGPS 93
Score = 26.9 bits (59), Expect = 1.4
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 7/64 (10%)
Query: 79 MEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQ-------CPYCITDFSEDKNL 131
++ S C +F +++L H H Q CP F L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 132 IQHI 135
+ HI
Sbjct: 79 VNHI 82
Score = 26.5 bits (58), Expect = 1.7
Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 9/73 (12%)
Query: 41 DSKESLVTHISQTHTLMFTCRRCPSTFLNSATLSKHVKMEH----NSKSYQC--NECP-- 92
K+ L L + C TF L HV MEH ++ C ECP
Sbjct: 9 PIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPRE 68
Query: 93 -ESFERLNKLKRH 104
+SF+ KL H
Sbjct: 69 GKSFKAKYKLVNH 81
Score = 24.5 bits (53), Expect = 9.9
Identities = 15/61 (24%), Positives = 19/61 (31%), Gaps = 8/61 (13%)
Query: 2 SCVPCDVLFHNKATLYKHLYLEHKATSLSIQ-------CNMCSLVLDSKESLVTHISQTH 54
CD F L H+ +EH C +K LV HI + H
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI-RVH 85
Query: 55 T 55
T
Sbjct: 86 T 86
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 25.6 bits (56), Expect = 1.3
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
++C++C F + N L +H+
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHE 32
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 25.2 bits (55), Expect = 1.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 58 FTCRRCPSTFLNSATLSKHVKMEHNSK 84
F C CP F+ S L+ H+ + N K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 25.7 bits (56), Expect = 1.4
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 84 KSYQCNECPESFERLNKLKRHKF 106
K C C + F + L RHK
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKL 33
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 25.6 bits (57), Expect = 1.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
KS+QC+EC F + L +H
Sbjct: 11 KSHQCHECGRGFTLKSHLNQH 31
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 25.6 bits (57), Expect = 1.5
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
+ Y+C EC +SF + L H
Sbjct: 9 RVYECQECGKSFRQKGSLTLH 29
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 27.6 bits (62), Expect = 1.5
Identities = 6/52 (11%), Positives = 15/52 (28%), Gaps = 11/52 (21%)
Query: 103 RHKFQAHNDSVHQIQ-----------CPYCITDFSEDKNLIQHIVSVHLGKE 143
H+FQ H + H+++ + E ++ +
Sbjct: 195 GHEFQGHGKTAHEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGS 246
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 25.6 bits (57), Expect = 1.6
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
KS+ C+EC ++F ++ L+ H+
Sbjct: 11 KSHTCDECGKNFCYISALRIHQ 32
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 1.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y C EC +SF R L +H+
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHE 32
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 1.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K ++C+ C +SF ++L RH
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHS 32
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 1.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y+C+EC ++F R L H+
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHR 32
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 1.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y CNEC +SF + + L RH+
Sbjct: 11 KPYICNECGKSFIQKSHLNRHR 32
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 25.6 bits (55), Expect = 1.6
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 82 NSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQ 115
K Y C C F+R +++ H ++H+ SV +
Sbjct: 7 GEKPYSCPVCGLRFKRKDRMSYH-VRSHDGSVGK 39
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 1.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y+C+EC + F R + L RH+
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQ 32
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 25.4 bits (56), Expect = 1.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
K Y C EC E+F N+L +H
Sbjct: 9 KPYSCAECKETFSDNNRLVQH 29
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.9
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K YQCNEC ++F + +KL RH+
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQ 32
>1h7d_A Aminolevulinic acid synthase 2, erythroid; acyltransferase, ALAS,
presequence, structure; NMR {Mus musculus} SCOP:
j.88.1.1 PDB: 1h7j_A
Length = 49
Score = 25.4 bits (55), Expect = 1.9
Identities = 8/39 (20%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 26 ATSLSIQCNMCSLVLDSKESLVTHISQTHTLMFTCRRCP 64
A ++ ++ C ++ L+ +++T+ +F+ RCP
Sbjct: 3 AAAMLLRS--CPVLSQGPTGLLGKVAKTYQFLFSIGRCP 39
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 2.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y+CNEC ++F + L H+
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQ 32
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 2.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y+CNEC + F + + L RH+
Sbjct: 11 KPYKCNECGKVFTQNSHLARHR 32
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 25.2 bits (56), Expect = 2.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 84 KSYQCNECPESFERLNKLKRHKFQAH 109
K Y+C EC ++F + L RH H
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYH 36
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 2.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y+CNEC + F + + L RH+
Sbjct: 11 KPYKCNECGKVFTQNSHLARHR 32
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 2.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y+CNEC + F + L RH+
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQ 32
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 27.5 bits (60), Expect = 2.4
Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 6/57 (10%)
Query: 35 MCSLVLDSKESLVTHISQTHTLMFTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNEC 91
+ + + L+ CRRC + ++ V + ++CN C
Sbjct: 206 VIRPYQHLYDDIDPPPLNEDGLIVRCRRC------RSYMNPFVTFIEQGRRWRCNFC 256
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 2.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y+CNEC + F + + L RH+
Sbjct: 11 KPYKCNECGKVFTQNSHLARHR 32
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 25.2 bits (56), Expect = 2.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y+CNEC + F R ++L +H+
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQ 32
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K YQC+EC +SF +L +H
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHW 32
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 24.8 bits (55), Expect = 2.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
Y+C+EC ++F R ++L H
Sbjct: 9 NPYECSECGKAFNRKDQLISH 29
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.6
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y C+ C ++F +L RH+
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQ 32
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 24.8 bits (55), Expect = 2.7
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y CNEC ++F + L H
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHT 32
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 25.2 bits (54), Expect = 2.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
KS+QC EC E F + L H+
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQ 32
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.9 bits (55), Expect = 2.7
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K +QC EC +F L +H
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHL 32
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y+CNEC + F + + L H
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHW 32
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 3.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y CNEC ++F + + L H+
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQ 32
Score = 23.3 bits (51), Expect = 9.2
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 58 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNE 90
+ C C TF + LS H + K +
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGPSS 45
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 24.8 bits (55), Expect = 3.0
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K+++C EC F + + L+ H+
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQ 32
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 3.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y CNEC ++F + L H+
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQ 32
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 3.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y+CNEC + F + + L H+
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQ 32
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 24.8 bits (55), Expect = 3.1
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y+C EC + F L H
Sbjct: 11 KPYKCEECGKGFICRRDLYTHH 32
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin
remodeling, DNA binding protein/DNA complex; HET: DNA;
NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB:
1yuj_A*
Length = 54
Score = 25.3 bits (54), Expect = 3.1
Identities = 12/53 (22%), Positives = 22/53 (41%)
Query: 92 PESFERLNKLKRHKFQAHNDSVHQIQCPYCITDFSEDKNLIQHIVSVHLGKEG 144
P++ + K ++ + S CP C + +NL +H+ H K G
Sbjct: 1 PKAKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG 53
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 24.5 bits (53), Expect = 3.1
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 58 FTCRRCPSTFLNSATLSKHVKMEHNSKS 85
F C CP F+ S LSKH+ +
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGE 30
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.7 bits (55), Expect = 3.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y+CNEC + F + + L RH+
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHR 32
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 3.2
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y+CNEC ++F + +KL RH+
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQ 32
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 3.3
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y+C C ++F + L +H
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHH 32
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 26.4 bits (59), Expect = 3.4
Identities = 9/49 (18%), Positives = 17/49 (34%)
Query: 63 CPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHND 111
C F + L +H K+ + + C + +H + H D
Sbjct: 142 CDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQD 190
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 24.7 bits (55), Expect = 3.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y+CNEC ++F + L H+
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQ 32
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 3.4
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
K ++C EC +S+ + L +H
Sbjct: 11 KPFKCGECGKSYNQRVHLTQH 31
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 3.5
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y+C+ C +SF + L H+
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQ 32
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 24.5 bits (54), Expect = 3.5
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y+C++C ++F + L H
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHI 31
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.6
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K ++C EC ++F + L H
Sbjct: 11 KPFKCKECGKAFRQNIHLASHL 32
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.6
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K + C +C ++F L +H+
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHR 32
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
K +QC EC + F + + L H
Sbjct: 11 KPFQCEECGKRFTQNSHLHSH 31
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y C EC ++F ++L+ H+
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQ 32
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
K Y+C EC + ++R L H
Sbjct: 11 KPYKCVECGKGYKRRLDLDFH 31
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.5 bits (54), Expect = 3.8
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y+C EC ++F + +H+
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQ 32
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.8
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
+ ++CNEC +SF + L +H
Sbjct: 11 RPHKCNECGKSFIQSAHLIQH 31
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 24.4 bits (54), Expect = 3.9
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
K ++C EC + F ++ H
Sbjct: 11 KPFKCEECGKGFYTNSQCYSH 31
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 24.4 bits (54), Expect = 4.0
Identities = 5/30 (16%), Positives = 14/30 (46%)
Query: 75 KHVKMEHNSKSYQCNECPESFERLNKLKRH 104
H + ++C++C + F + + +H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQH 31
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 4.1
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y+C+ C + F + + L+ H+
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQ 32
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 4.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y+C EC ++F ++ L +HK
Sbjct: 11 KPYECKECRKTFIQIGHLNQHK 32
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 4.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
+ ++CNEC + F R + L H
Sbjct: 11 RPFKCNECGKGFGRRSHLAGH 31
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 4.5
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 58 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNE 90
+ C+ C F A L++H K K +
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS 45
Score = 23.6 bits (52), Expect = 7.8
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
K Y+C C ++F + L +H
Sbjct: 11 KPYECKVCSKAFTQKAHLAQH 31
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 24.4 bits (54), Expect = 4.7
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 75 KHVKMEHNSKSYQCNECPESFERLNKLKRH 104
K Y+C EC ++F + L +H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQH 31
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 5.2
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y CN C ++F L +H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHL 32
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.1 bits (53), Expect = 5.2
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
K +C EC ++F ++L H
Sbjct: 11 KPCKCTECGKAFCWKSQLIMH 31
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 24.1 bits (53), Expect = 5.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y C EC +SF + L +H+
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQ 32
Score = 24.1 bits (53), Expect = 5.6
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 58 FTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNE 90
+ C+ C +F ++ L KH ++ K +
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 24.0 bits (53), Expect = 5.7
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
K ++C C +SF L H
Sbjct: 11 KPFECTHCGKSFRAKGNLVTH 31
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 24.0 bits (53), Expect = 5.9
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
+ Y+C EC ++F+ + L H+
Sbjct: 11 RPYECIECGKAFKTKSSLICHR 32
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 6.0
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K ++C EC + F + ++L H+
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQ 32
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 24.0 bits (53), Expect = 6.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
Y+C EC + F R ++L H
Sbjct: 11 NPYECCECGKVFSRKDQLVSH 31
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 6.2
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y+C+ C ++F L +H+
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQ 32
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 24.0 bits (53), Expect = 6.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y+CNEC ++F + L H+
Sbjct: 11 KPYECNECGKAFIWKSLLIVHE 32
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 6.2
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y+C EC ++F + L +H+
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQ 32
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 6.4
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
+ Y+C+EC ++F R + L H
Sbjct: 11 RHYECSECGKAFARKSTLIMH 31
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 6.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
Y+C+EC ++F R +L H
Sbjct: 11 NPYECHECGKAFSRKYQLISH 31
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 24.0 bits (53), Expect = 6.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
K ++C EC +SF ++L H
Sbjct: 11 KPFECAECGKSFSISSQLATH 31
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 6.7
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y+C +C + + R L H+
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQ 32
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 6.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
K ++C EC ++F R + L H
Sbjct: 11 KHFECTECGKAFTRKSTLSMH 31
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 23.6 bits (52), Expect = 7.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
K ++C EC + F R + L H
Sbjct: 11 KPFKCVECGKGFSRRSALNVH 31
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 23.6 bits (52), Expect = 7.2
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
K Y C++C ++F ++L H
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVH 31
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.7 bits (52), Expect = 7.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y+CNEC ++F + L H+
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQ 32
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.7 bits (52), Expect = 7.4
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y C+EC ++F + L H
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHM 32
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 7.5
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
K Y+C++C +SF ++L+ H
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIH 31
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 23.8 bits (52), Expect = 7.5
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
Y C +C +SF + L H
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVH 30
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 7.5
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
+ Y+C+EC ++F + + L H
Sbjct: 11 RHYECSECGKAFIQKSTLSMH 31
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 7.8
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
K ++C+EC ++F + L H
Sbjct: 11 KPFECSECQKAFNTKSNLIVH 31
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 7.8
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y+CN+C ++F + L H+
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQ 32
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 7.9
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
K Y C EC ++F + L +H
Sbjct: 11 KPYICAECGKAFTIRSNLIKH 31
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 25.7 bits (55), Expect = 8.3
Identities = 4/28 (14%), Positives = 16/28 (57%)
Query: 86 YQCNECPESFERLNKLKRHKFQAHNDSV 113
+ C + + FE++ H+ ++ ++++
Sbjct: 419 FGCRDSADHFEQMAAASMHQVRSPSNAI 446
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 24.3 bits (53), Expect = 8.4
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 63 CPSTFLNSATLSKHVKMEHNSKSYQCN--ECPESFERLNKLKRHK 105
C T+ S+ L H + K + C+ C F R ++L RH+
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHR 69
>3oue_A Cytochrome C family protein; multiheme cytochrome-C, electron
transfer, Fe reduction, GEO sulfurreducens, cytochrome
C7 (C3) fold; HET: HEM; 2.15A {Geobacter
sulfurreducens}
Length = 158
Score = 25.3 bits (54), Expect = 8.7
Identities = 9/40 (22%), Positives = 13/40 (32%)
Query: 52 QTHTLMFTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNEC 91
+ H M+ C C + +K M K C C
Sbjct: 22 EFHLGMYKCNECHTKLFAYKAGAKRFTMADMDKGKSCGAC 61
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 9.0
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
+ Y C C ++F + L +H
Sbjct: 11 RPYICTVCGKAFTDRSNLIKH 31
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 9.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
K Y+C++C +SF + ++L H
Sbjct: 11 KPYECSDCGKSFIKKSQLHVH 31
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 23.3 bits (51), Expect = 9.2
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
K + C+ C ++F + L H
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVH 29
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 9.2
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y+C +C + + L H+
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQ 32
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.130 0.405
Gapped
Lambda K H
0.267 0.0498 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,933,880
Number of extensions: 90424
Number of successful extensions: 692
Number of sequences better than 10.0: 1
Number of HSP's gapped: 580
Number of HSP's successfully gapped: 279
Length of query: 150
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 65
Effective length of database: 4,328,508
Effective search space: 281353020
Effective search space used: 281353020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.7 bits)