RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12196
(150 letters)
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 30.8 bits (69), Expect = 0.009
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 63 CPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHK 105
C +F + + +H+ M + Y C C + F+ + L H
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 50
Score = 27.7 bits (61), Expect = 0.13
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 84 KSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQCPYCITDFSEDKNLIQH 134
K Y C +C +SF ++ RH + + + C C F +L+ H
Sbjct: 2 KLYPC-QCGKSFTHKSQRDRH--MSMHLGLRPYGCGVCGKKFKMKHHLVGH 49
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 27.6 bits (62), Expect = 0.081
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 84 KSYQCNECPESFERLNKLKRHKFQAHNDSV 113
K Y+C C F + +K H Q H ++V
Sbjct: 7 KPYECYICHARFTQSGTMKMHILQKHTENV 36
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 27.3 bits (61), Expect = 0.13
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 84 KSYQCNECPESFERLNKLKRHKFQAH 109
K Y C C + F R + L H Q H
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIKQVH 29
Score = 23.8 bits (52), Expect = 2.2
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 58 FTCRRCPSTFLNSATLSKHVKMEH-NSKSYQCN 89
+ C+ C F L+ H+K H + + ++C
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 26.8 bits (60), Expect = 0.14
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
+S+ C C +F R LKRH
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY 22
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 26.8 bits (60), Expect = 0.16
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K +QC C +F R + L H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHI 23
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 26.8 bits (60), Expect = 0.17
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y C EC ++F R + L +H+
Sbjct: 6 KPYGCVECGKAFSRSSILVQHQ 27
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 26.6 bits (59), Expect = 0.20
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 84 KSYQCNECPESFERLNKLKRHKFQAHNDS 112
K Y C+ C ++F + L H + H+ +
Sbjct: 7 KPYACSHCDKTFRQKQLLDMHFKRYHDPN 35
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 25.8 bits (57), Expect = 0.35
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K + C ECP+ F R + L +H
Sbjct: 1 KKFACPECPKRFMRSDHLSKHI 22
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 25.1 bits (55), Expect = 0.68
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 75 KHVKMEHNSKSYQCNECPESFERLNKLKRHK 105
+ + + Y+C+EC +SF + L +H+
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHR 32
>d1rwja_ a.138.1.1 (A:) Cytochrome c7 (cytochrome c551.5, PpcA)
{Geobacter sulfurreducens, GSU1996 [TaxId: 35554]}
Length = 81
Score = 25.6 bits (56), Expect = 0.97
Identities = 9/38 (23%), Positives = 12/38 (31%)
Query: 54 HTLMFTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNEC 91
H M+ C C + +K M K C C
Sbjct: 26 HLGMYKCNECHTKLFAYKAGAKRFTMADMDKGKSCGAC 63
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 24.5 bits (54), Expect = 1.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K Y+C EC ++F + + L H+
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQ 22
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 26
Score = 24.2 bits (52), Expect = 1.5
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 118 CPYCITDFSEDKNLIQHIVSVH 139
CP+C +F+ N+ H+ +H
Sbjct: 4 CPFCFKEFTRKDNMTAHVKIIH 25
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 23.6 bits (51), Expect = 2.4
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
+ + C C +F RH
Sbjct: 6 RPFVCRICLSAFTTKANCARHL 27
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 23.5 bits (51), Expect = 2.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 84 KSYQCNECPESFERLNKLKRHK 105
K +QC +C SF R + L H+
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHR 31
>d1qu9a_ d.79.1.1 (A:) Conserved 'hypothetical' protein YjgF
{Escherichia coli [TaxId: 562]}
Length = 127
Score = 24.7 bits (53), Expect = 3.3
Identities = 9/78 (11%), Positives = 26/78 (33%)
Query: 73 LSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQCPYCITDFSEDKNLI 132
S + + + + ++ + L+ +K A ++ + D ++ +
Sbjct: 28 TSGQIPVNPKTGEVPADVAAQARQSLDNVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVN 87
Query: 133 QHIVSVHLGKEGTAPART 150
+ T PAR+
Sbjct: 88 ATYEAFFTEHNATFPARS 105
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 22.5 bits (48), Expect = 4.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 84 KSYQCNECPESFERLNKLKRH 104
K + C+ C F R ++ KRH
Sbjct: 2 KPFACDICGRKFARSDERKRH 22
>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 22.4 bits (47), Expect = 6.3
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 57 MFTCRRCPSTFLNSATLSKHVKMEHNS 83
MFTC C + A + HV HNS
Sbjct: 2 MFTCHHCGKQLRSLAGMKYHVMANHNS 28
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 22.4 bits (47), Expect = 6.4
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 85 SYQCNECPESFERLNKLKRH 104
++ C++C ++F R N + RH
Sbjct: 4 AFVCSKCGKTFTRRNTMARH 23
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 22.3 bits (47), Expect = 6.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 88 CNECPESFERLNKLKRH 104
C EC ++F +KLKRH
Sbjct: 5 CAECGKAFVESSKLKRH 21
>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 50
Score = 22.8 bits (49), Expect = 7.0
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 50 ISQTHTLMFTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNEC 91
T T +FTC +C + E + CNEC
Sbjct: 2 TGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNEC 43
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 22.3 bits (48), Expect = 7.1
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 84 KSYQCN--ECPESFERLNKLKRHK 105
+ + C C + F R ++L+RHK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHK 24
>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId:
7227]}
Length = 54
Score = 22.4 bits (47), Expect = 8.8
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 99 NKLKRH-----KFQAHNDSVHQIQCPYCITDFSEDKNLIQHIVSVHLGKEG 144
K +H K ++ + S CP C + +NL +H+ H K G
Sbjct: 3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG 53
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.130 0.405
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 490,722
Number of extensions: 19482
Number of successful extensions: 162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 67
Length of query: 150
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 72
Effective length of database: 1,336,656
Effective search space: 96239232
Effective search space used: 96239232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.2 bits)