BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12199
(597 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 189 LKCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
C IC K +FK +LS H+ H + R Y C+ C K+F KS +K+H+ H KP KC
Sbjct: 2 FDCKICGK-SFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 249 EICGHYLSRASRLRAHLKAHS 269
++CG S++S L H + H+
Sbjct: 61 QVCGKAFSQSSNLITHSRKHT 81
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 217 EYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHSVVASNNK 276
++C+IC K F STL H + H +P+ C+ CG + S +K H+ + + K
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSD----MKKHTFIHTGEK 56
Query: 277 VQNCKKCFK 285
C+ C K
Sbjct: 57 PHKCQVCGK 65
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN 520
+PY C+ C K + + + H +H+GE ++C VC K F S L H+R+H
Sbjct: 28 RPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 496 YQCDVCFKEFRSSVTLRNHTRRHDN---FSCDECSVECQDLNALRMHTLREHGYKILACE 552
+ C +C K F+ S TL H H + + C C + ++ HT G K C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 553 KCDVKFTHKALLAEH 567
C F+ + L H
Sbjct: 62 VCGKAFSQSSNLITH 76
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 469 YTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDNFSCDECS 527
+ C+IC K++ +L TH +HS Y C C K F ++ HT H +C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 528 V 528
V
Sbjct: 62 V 62
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 16/92 (17%)
Query: 126 CEECDINFPSKMRHTFHLQHHLEDPDLPVNFMHECRECGSQF---ADILKHSLETHLSFI 182
C+ C +F + HL H + P C+ CG +F +D+ KH+ FI
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYP------CQYCGKRFHQKSDMKKHT------FI 51
Query: 183 HVQDNQLKCTICNKENFKNQLSLSIHMRYHEN 214
H + KC +C K F +L H R H
Sbjct: 52 HTGEKPHKCQVCGKA-FSQSSNLITHSRKHTG 82
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 62/146 (42%), Gaps = 12/146 (8%)
Query: 125 RCEECDINFPSKMRHTFHLQHHL-EDPDLPVNFMHECRECGSQFADILKHSLETHLSFIH 183
+C EC +F K T H + H E P ++C ECG F+ + +L H H
Sbjct: 51 KCPECGKSFSDKKDLTRHQRTHTGEKP-------YKCPECGKSFSQ--RANLRAHQR-TH 100
Query: 184 VQDNQLKCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSV 243
+ C C K +F L H R H + Y+C C K F + L H +H
Sbjct: 101 TGEKPYACPECGK-SFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGE 159
Query: 244 KPFKCEICGHYLSRASRLRAHLKAHS 269
KP+KC CG SR L H + H+
Sbjct: 160 KPYKCPECGKSFSRRDALNVHQRTHT 185
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 52/131 (39%), Gaps = 5/131 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN---FS 522
KPY C C K+++ L H H+GE Y+C C K F L H R H +
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYK 79
Query: 523 CDECSVECQDLNALRMHTLREHGYKILACEKCDVKFTHKALLAEHINTKHNTDVTLKCQL 582
C EC LR H G K AC +C F+ A L H T H + KC
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT-HTGEKPYKCPE 138
Query: 583 CNVVVLIEEVI 593
C E+ +
Sbjct: 139 CGKSFSREDNL 149
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 64/164 (39%), Gaps = 11/164 (6%)
Query: 418 KSVTCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKM-------KPYT 470
K C C K+FS ++ H G K K P+ G+ + L + KPY
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYK 79
Query: 471 CEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN---FSCDEC 526
C C K+++ +L H H+GE Y C C K F LR H R H + C EC
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPEC 139
Query: 527 SVECQDLNALRMHTLREHGYKILACEKCDVKFTHKALLAEHINT 570
+ L H G K C +C F+ + L H T
Sbjct: 140 GKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRT 183
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 191 CTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCEI 250
C C K +F L+ H R H + Y+C C K F +K L H +H KP+KC
Sbjct: 24 CPECGK-SFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPE 82
Query: 251 CGHYLSRASRLRAHLKAHSVVASNNKVQNCKKCFK 285
CG S+ + LRAH + H + K C +C K
Sbjct: 83 CGKSFSQRANLRAHQRTH----TGEKPYACPECGK 113
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 73/198 (36%), Gaps = 42/198 (21%)
Query: 332 FLCELCDKTSIHYTYLCLHKKLKHSNLTYGGESPV-CEPCNLTFKNEWQYLVHNRAVHEL 390
+ C C K+ +L H++ T+ GE P C C +F ++ H R
Sbjct: 22 YACPECGKSFSRSDHLAEHQR------THTGEKPYKCPECGKSFSDKKDLTRHQR----- 70
Query: 391 PPEPNSGAGSVLQNNPYPPLRKAKQHVKSVTCSVCEKAFSSKENCKAHYTRQHGNKEPKE 450
+ PY C C K+FS + N +AH G K
Sbjct: 71 ---------THTGEKPY-------------KCPECGKSFSQRANLRAHQRTHTGEKPYAC 108
Query: 451 PKSGEGLPALEQL-------LKMKPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCF 502
P+ G+ L L KPY C C K+++ E +L TH H+GE Y+C C
Sbjct: 109 PECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECG 168
Query: 503 KEFRSSVTLRNHTRRHDN 520
K F L H R H
Sbjct: 169 KSFSRRDALNVHQRTHTG 186
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 62/167 (37%), Gaps = 21/167 (12%)
Query: 85 HTAVHQATPWQEVPGSIP------SQAMNPTMLTTTRVGNISLKIPRCEECDINFPSKMR 138
H A HQ T E P P S + T T G K P EC +F +
Sbjct: 36 HLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP---ECGKSFSQRAN 92
Query: 139 HTFHLQHHL-EDPDLPVNFMHECRECGSQFADILKHSLETHLSFIHVQDNQLKCTICNKE 197
H + H E P + C ECG F+ + L H H + KC C K
Sbjct: 93 LRAHQRTHTGEKP-------YACPECGKSFSQLAH--LRAHQR-THTGEKPYKCPECGK- 141
Query: 198 NFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVK 244
+F + +L H R H + Y+C C K F + L H +H K
Sbjct: 142 SFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 75/230 (32%), Gaps = 64/230 (27%)
Query: 218 YECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHSVVASNNKV 277
Y C C K F L EH +H KP+KC CG S L H + H+
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG------- 74
Query: 278 QNCKKCFKCCQVFPSNEENLRKHFEKVHFDLEFDEAHFYDVVLKCVYRFRIVQYFLCELC 337
+ KC +C + F S NLR H ++ H + + C C
Sbjct: 75 EKPYKCPECGKSF-SQRANLRAH-QRTHTG---------------------EKPYACPEC 111
Query: 338 DKTSIHYTYLCLHKKLKHSNLTYGGESPV-CEPCNLTFKNEWQYLVHNRAVHELPPEPNS 396
K+ +L H++ T+ GE P C C +F E H R
Sbjct: 112 GKSFSQLAHLRAHQR------THTGEKPYKCPECGKSFSREDNLHTHQR----------- 154
Query: 397 GAGSVLQNNPYPPLRKAKQHVKSVTCSVCEKAFSSKENCKAHYTRQHGNK 446
+ PY C C K+FS ++ H G K
Sbjct: 155 ---THTGEKPY-------------KCPECGKSFSRRDALNVHQRTHTGKK 188
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 190 KCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
KC +C K F + L HMR H V+ Y+C+ C + S+L +H H +PFKC+
Sbjct: 10 KCEVCGK-CFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 250 ICGHYLSRASRLRAHLKAHS 269
IC + +S+L HL++H+
Sbjct: 69 ICPYASRNSSQLTVHLRSHT 88
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 218 YECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
++CE+C K F K LK H H VKP+KC+ C + + +S L HL+ HS
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS 60
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 468 PYTCEICSKTYTVEGSLLTHYDMHSG-EFYQCDVCFKEFRSSVTLRNHTRRHDN---FSC 523
P+ CE+C K ++ + L TH H+G + Y+C C S +L H R H + F C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 524 DECSVECQDLNALRMHTLREH 544
C ++ + L +H LR H
Sbjct: 68 QICPYASRNSSQLTVH-LRSH 87
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 13/71 (18%)
Query: 239 SHMSVKPFKCEICGHYLSRASRLRAHLKAHSVVASNNKVQNCKKCFKC--CQVFPSNEEN 296
S S P KCE+CG SR +L+ H++ H+ V K +KC C ++ +
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGV----------KPYKCKTCDYAAADSSS 51
Query: 297 LRKHFEKVHFD 307
L KH ++H D
Sbjct: 52 LNKHL-RIHSD 61
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 38/102 (37%), Gaps = 22/102 (21%)
Query: 422 CSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTVE 481
C VC K FS K+ K H G +KPY C+ C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTG---------------------VKPYKCKTCDYAAADS 49
Query: 482 GSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDNFS 522
SL H +HS E ++C +C R+S L H R H S
Sbjct: 50 SSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDS 91
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 189 LKCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
KC C K +F +L H R H + Y+C C K F S L++H +H KP+KC
Sbjct: 5 YKCPECGK-SFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 249 EICGHYLSRASRLRAHLKAH 268
CG SR+ L H + H
Sbjct: 64 PECGKSFSRSDHLSRHQRTH 83
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 216 REYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHSVVASNN 275
+ Y+C C K F S L++H +H KP+KC CG S++S L+ H + H +
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH----TGE 58
Query: 276 KVQNCKKCFK 285
K C +C K
Sbjct: 59 KPYKCPECGK 68
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN---FS 522
KPY C C K+++ +L H H+GE Y+C C K F S L+ H R H +
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 523 CDECSVECQDLNALRMH 539
C EC + L H
Sbjct: 63 CPECGKSFSRSDHLSRH 79
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 42/104 (40%), Gaps = 22/104 (21%)
Query: 418 KSVTCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKT 477
K C C K+FS N + H R H +GE KPY C C K+
Sbjct: 3 KPYKCPECGKSFSQSSNLQKH-QRTH---------TGE-----------KPYKCPECGKS 41
Query: 478 YTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN 520
++ L H H+GE Y+C C K F S L H R H N
Sbjct: 42 FSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQN 85
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 158 HECRECGSQFADILKHSLETHLSFIHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVRE 217
++C ECG F+ +L+ H H + KC C K +F L H R H +
Sbjct: 5 YKCPECGKSFSQSS--NLQKHQR-THTGEKPYKCPECGK-SFSQSSDLQKHQRTHTGEKP 60
Query: 218 YECEICKKKFINKSTLKEHSVSHMSVK 244
Y+C C K F L H +H + K
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQNKK 87
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 12/111 (10%)
Query: 194 CNKENFKNQLS-LSIHMRYHENVREYECEI--CKKKFINKSTLKEHSVSHMSVKPFKCEI 250
CNK FK LS L +H R H + Y+C+ C+++F LK H H VKPF+C+
Sbjct: 14 CNKRYFK--LSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKT 71
Query: 251 CGHYLSRASRLRAHLKAHSVVASNNKVQNCKKCFKCCQ-VFPSNEENLRKH 300
C SR+ HLK H+ + K +C+ + CQ F ++E +R H
Sbjct: 72 CQRKFSRSD----HLKTHTRTHTGEKPFSCR--WPSCQKKFARSDELVRHH 116
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 43/121 (35%), Gaps = 31/121 (25%)
Query: 467 KPYTCEI--CSKTYTVEGSLLTHYDMHSGEF-YQCDV--CFKEFRSSVTLRNHTRRHDNF 521
+P+ C C+K Y L H H+GE YQCD C + F S L+ H RRH
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT-- 62
Query: 522 SCDECSVECQDLNALRMHTLREHGYKILACEKCDVKFTHKALLAEHINTKHNTDVTLKCQ 581
G K C+ C KF+ L H T H + C+
Sbjct: 63 -----------------------GVKPFQCKTCQRKFSRSDHLKTHTRT-HTGEKPFSCR 98
Query: 582 L 582
Sbjct: 99 W 99
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 25/94 (26%)
Query: 425 CEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTVEGSL 484
CE+ FS + K H R G +KP+ C+ C + ++ L
Sbjct: 44 CERRFSRSDQLKRHQRRHTG---------------------VKPFQCKTCQRKFSRSDHL 82
Query: 485 LTHYDMHSGEF-YQCD--VCFKEF-RSSVTLRNH 514
TH H+GE + C C K+F RS +R+H
Sbjct: 83 KTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHH 116
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 23/77 (29%)
Query: 417 VKSVTCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEI--C 474
VK C C++ FS ++ K H TR H +GE KP++C C
Sbjct: 64 VKPFQCKTCQRKFSRSDHLKTH-TRTH---------TGE-----------KPFSCRWPSC 102
Query: 475 SKTYTVEGSLLTHYDMH 491
K + L+ H++MH
Sbjct: 103 QKKFARSDELVRHHNMH 119
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%)
Query: 197 ENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLS 256
F SL+ H+R H + ++C IC + F L H +H KPF C+ICG +
Sbjct: 14 RRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 73
Query: 257 RASRLRAHLKAH 268
R+ + H K H
Sbjct: 74 RSDERKRHTKIH 85
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 467 KPYTC--EICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN--- 520
+PY C E C + ++ GSL H +H+G+ +QC +C + F S L H R H
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 521 FSCDECSVECQDLNALRMHT 540
F+CD C + + + HT
Sbjct: 63 FACDICGRKFARSDERKRHT 82
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 174 SLETHLSFIHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTL 233
SL H+ IH +C IC + NF L+ H+R H + + C+IC +KF
Sbjct: 21 SLTRHIR-IHTGQKPFQCRICMR-NFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDER 78
Query: 234 KEHSVSHMSVK 244
K H+ H+ K
Sbjct: 79 KRHTKIHLRQK 89
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
KP+ C IC + ++ L TH H+GE + CD+C ++F S + HT+ H
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 216 REYEC--EICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
R Y C E C ++F +L H H KPF+C IC SR+ L H++ H+
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 191 CTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCEI 250
C C + +F +L IH R H + R Y C+IC K F + L++H H KPFKC+
Sbjct: 20 CKFCGR-HFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQE 78
Query: 251 CGHYLSRASRLRAHLKAHSVVAS 273
CG ++ L H H +S
Sbjct: 79 CGKGFCQSRTLAVHKTLHMQTSS 101
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN---FS 522
K + C+ C + +T +LL H H+ E Y CD+C K FR LR+H H F
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 523 CDECS 527
C EC
Sbjct: 76 CQECG 80
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 216 REYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHSVVASNN 275
+E+ C+ C + F L H +H +P+ C+IC +A R + HL+ H + S
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDIC----HKAFRRQDHLRDHRYIHSKE 71
Query: 276 KVQNCKKCFK 285
K C++C K
Sbjct: 72 KPFKCQECGK 81
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+PYTC+IC K + + L H +HS E ++C C K F S TL H H
Sbjct: 44 RPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 197 ENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLS 256
F + +L+ H+R H + ++C IC + F L H +H KPF C+ICG +
Sbjct: 14 RRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 73
Query: 257 RASRLRAHLKAH 268
R+ + H K H
Sbjct: 74 RSDERKRHTKIH 85
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 163 CGSQFADILKHSLETHLSFIHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVREYECEI 222
C +F+D +L H+ IH +C IC + NF L+ H+R H + + C+I
Sbjct: 12 CDRRFSD--SSNLTRHIR-IHTGQKPFQCRICMR-NFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 223 CKKKFINKSTLKEHSVSHMSVK 244
C +KF K H+ H+ K
Sbjct: 68 CGRKFARSDERKRHTKIHLRQK 89
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 216 REYEC--EICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
R Y C E C ++F + S L H H KPF+C IC SR+ L H++ H+
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
KP+ C IC + ++ L TH H+GE + CD+C ++F S + HT+ H
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 467 KPYTC--EICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN--- 520
+PY C E C + ++ +L H +H+G+ +QC +C + F S L H R H
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 521 FSCDECSVECQDLNALRMHT 540
F+CD C + + + HT
Sbjct: 63 FACDICGRKFARSDERKRHT 82
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 197 ENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLS 256
F L+ H+R H + ++C IC + F L H +H KPF C+ICG +
Sbjct: 14 RRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 73
Query: 257 RASRLRAHLKAH 268
R+ + H K H
Sbjct: 74 RSDERKRHTKIH 85
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 165 SQFADILKHSLETHLSFIHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVREYECEICK 224
S+ AD+ +H IH +C IC + NF L+ H+R H + + C+IC
Sbjct: 17 SRSADLTRHIR------IHTGQKPFQCRICMR-NFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 225 KKFINKSTLKEHSVSHMSVK 244
+KF K H+ H+ K
Sbjct: 70 RKFARSDERKRHTKIHLRQK 89
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 467 KPYTC--EICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN--- 520
+PY C E C + ++ L H +H+G+ +QC +C + F S L H R H
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 521 FSCDECSVECQDLNALRMHT 540
F+CD C + + + HT
Sbjct: 63 FACDICGRKFARSDERKRHT 82
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
KP+ C IC + ++ L TH H+GE + CD+C ++F S + HT+ H
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 216 REYEC--EICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
R Y C E C ++F + L H H KPF+C IC SR+ L H++ H+
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 197 ENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLS 256
F L+ H+R H + ++C IC + F L H +H KPF C+ICG +
Sbjct: 14 RRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 73
Query: 257 RASRLRAHLKAH 268
R+ + H K H
Sbjct: 74 RSDERKRHTKIH 85
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 467 KPYTC--EICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN--- 520
+PY C E C + ++ L H +H+G+ +QC +C + F S L H R H
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 521 FSCDECSVECQDLNALRMHT 540
F+CD C + + + HT
Sbjct: 63 FACDICGRKFARSDERKRHT 82
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
KP+ C IC + ++ L TH H+GE + CD+C ++F S + HT+ H
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 182 IHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHM 241
IH +C IC + NF L+ H+R H + + C+IC +KF K H+ H+
Sbjct: 28 IHTGQKPFQCRICMR-NFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
Query: 242 SVK 244
K
Sbjct: 87 RQK 89
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 216 REYEC--EICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
R Y C E C ++F + L H H KPF+C IC SR+ L H++ H+
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 197 ENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLS 256
F L+ H+R H + ++C IC + F L H +H KPF C+ICG +
Sbjct: 14 RRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 73
Query: 257 RASRLRAHLKAH 268
R+ + H K H
Sbjct: 74 RSDERKRHTKIH 85
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
KP+ C IC + ++ L TH H+GE + CD+C ++F S + HT+ H
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 182 IHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHM 241
IH +C IC + NF L+ H+R H + + C+IC +KF K H+ H+
Sbjct: 28 IHTGQKPFQCRICMR-NFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
Query: 242 SVK 244
K
Sbjct: 87 RQK 89
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 467 KPYTC--EICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN--- 520
+PY C E C + ++ L H +H+G+ +QC +C + F S L H R H
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 521 FSCDECSVECQDLNALRMHT 540
F+CD C + + + HT
Sbjct: 63 FACDICGRKFARSDERKRHT 82
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 216 REYEC--EICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
R Y C E C ++F L H H KPF+C IC SR+ L H++ H+
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 197 ENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLS 256
F L+ H+R H + ++C IC + F L H +H KPF C+ICG +
Sbjct: 13 RRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 72
Query: 257 RASRLRAHLKAH 268
R+ + H K H
Sbjct: 73 RSDERKRHTKIH 84
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 466 MKPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
KP+ C IC + ++ L TH H+GE + CD+C ++F S + HT+ H
Sbjct: 31 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 467 KPYTC--EICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN--- 520
+PY C E C + ++ L H +H+G+ +QC +C + F S L H R H
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 521 FSCDECSVECQDLNALRMHT 540
F+CD C + + + HT
Sbjct: 62 FACDICGRKFARSDERKRHT 81
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 182 IHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHM 241
IH +C IC + NF L+ H+R H + + C+IC +KF K H+ H+
Sbjct: 27 IHTGQKPFQCRICMR-NFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 85
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 216 REYEC--EICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
R Y C E C ++F L H H KPF+C IC SR+ L H++ H+
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 57
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 197 ENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLS 256
F L+ H+R H + ++C IC + F L H +H KPF C+ICG +
Sbjct: 14 RRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 73
Query: 257 RASRLRAHLKAH 268
R+ + H K H
Sbjct: 74 RSDERKRHTKIH 85
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
KP+ C IC + ++ L TH H+GE + CD+C ++F S + HT+ H
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 467 KPYTC--EICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN--- 520
+PY C E C + ++ L H +H+G+ +QC +C + F S L H R H
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 521 FSCDECSVECQDLNALRMHT 540
F+CD C + + + HT
Sbjct: 63 FACDICGRKFARSDERKRHT 82
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 182 IHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHM 241
IH +C IC + NF L+ H+R H + + C+IC +KF K H+ H+
Sbjct: 28 IHTGQKPFQCRICMR-NFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 216 REYEC--EICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
R Y C E C ++F L H H KPF+C IC SR+ L H++ H+
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 199 FKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRA 258
F + +L H+R H + ++C IC + F +++L H +H KPF C+ICG +
Sbjct: 16 FSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATL 75
Query: 259 SRLRAHLKAH 268
H K H
Sbjct: 76 HTRTRHTKIH 85
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 163 CGSQFADILKHSLETHLSFIHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVREYECEI 222
C +F+ K +L+TH+ IH +C IC + NF Q SL+ H+R H + + C+I
Sbjct: 12 CDRRFSQ--KTNLDTHIR-IHTGQKPFQCRICMR-NFSQQASLNAHIRTHTGEKPFACDI 67
Query: 223 CKKKFINKSTLKEHSVSHMSVK 244
C +KF T H+ H+ K
Sbjct: 68 CGRKFATLHTRTRHTKIHLRQK 89
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 467 KPYTC--EICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN--- 520
+PY C E C + ++ + +L TH +H+G+ +QC +C + F +L H R H
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 521 FSCDECSVECQDLNALRMHT 540
F+CD C + L+ HT
Sbjct: 63 FACDICGRKFATLHTRTRHT 82
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 216 REYEC--EICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
R Y C E C ++F K+ L H H KPF+C IC S+ + L AH++ H+
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHT 58
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
KP+ C IC + ++ + SL H H+GE + CD+C ++F + T HT+ H
Sbjct: 33 KPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIH 85
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 199 FKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRA 258
F + +L H+R H + ++C IC + F + L +H +H KPF C+ICG +
Sbjct: 16 FSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATL 75
Query: 259 SRLRAHLKAH 268
H K H
Sbjct: 76 HTRDRHTKIH 85
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 163 CGSQFADILKHSLETHLSFIHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVREYECEI 222
C +F+ K +L+TH+ IH +C IC + NF L+ H+R H + + C+I
Sbjct: 12 CDRRFSQ--KTNLDTHIR-IHTGQKPFQCRICMR-NFSQHTGLNQHIRTHTGEKPFACDI 67
Query: 223 CKKKFINKSTLKEHSVSHMSVK 244
C +KF T H+ H+ K
Sbjct: 68 CGRKFATLHTRDRHTKIHLRQK 89
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 467 KPYTC--EICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN--- 520
+PY C E C + ++ + +L TH +H+G+ +QC +C + F L H R H
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 521 FSCDECSVECQDLNALRMHT 540
F+CD C + L+ HT
Sbjct: 63 FACDICGRKFATLHTRDRHT 82
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 216 REYEC--EICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
R Y C E C ++F K+ L H H KPF+C IC S+ + L H++ H+
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHT 58
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
KP+ C IC + ++ L H H+GE + CD+C ++F + T HT+ H
Sbjct: 33 KPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIH 85
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 220 CEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH-SVVASNNKVQ 278
CEIC K F + L H +SH KP+ C +CG R R+ H+++H V Q
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 279 NCKKCFKCCQVFPSNEENLRKHFEKVH 305
+C K F S ++L H ++VH
Sbjct: 70 SCGKGF-------SRPDHLNGHIKQVH 89
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 187 NQLKCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSV--K 244
+ + C IC K F++ L+ H H + Y C +C +F K + H SH K
Sbjct: 6 SGVACEICGKI-FRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 64
Query: 245 PFKCEICGHYLSRASRLRAHLK-AHSVVASN 274
P+ C+ CG SR L H+K HS +S
Sbjct: 65 PYICQSCGKGFSRPDHLNGHIKQVHSGPSSG 95
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 6/81 (7%)
Query: 470 TCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN-----FSC 523
CEIC K + L H HSGE Y C VC F+ + H R HD + C
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 524 DECSVECQDLNALRMHTLREH 544
C + L H + H
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVH 89
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 520 NFSCDECSVECQDLNALRMHTLREHGYKILACEKCDVKFTHKALLAEHINTKHNTDVT-- 577
+C+ C +D+ L H L G K +C C ++F K ++ H+ + H+ V
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGKP 65
Query: 578 LKCQLCN 584
CQ C
Sbjct: 66 YICQSCG 72
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN 520
KPY C+ C ++ +G+L +H +H+GE Y+C++C +F L+ HTR H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 216 REYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
+ Y+C+ C+ F K L H H KP++C ICG +R + L+ H + HS
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 186 DNQLKCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKP 245
D KC C + +F+ + +L+ H H + Y C IC +F + LK H+ H KP
Sbjct: 15 DKPYKCDRC-QASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 28/77 (36%), Gaps = 21/77 (27%)
Query: 418 KSVTCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKT 477
K C C+ +F K N +H T G K PY C IC
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEK---------------------PYRCNICGAQ 54
Query: 478 YTVEGSLLTHYDMHSGE 494
+ +L TH +HSGE
Sbjct: 55 FNRPANLKTHTRIHSGE 71
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 13/125 (10%)
Query: 161 RECGSQFADILKHSLETHLSFIHVQDNQLKCTICNKE-------NFKNQLSLSIHMRYHE 213
+ C F+ + H L TH++ HV + +C E +FK + L H+R H
Sbjct: 29 KSCDRTFSTM--HELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86
Query: 214 NVREYECEI--CKKKFINKSTLKEHSVSHMSVKPFKCEI--CGHYLSRASRLRAHLKAHS 269
+ + C C K F LK H +H KPFKCE C + +S + H+ H+
Sbjct: 87 GEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
Query: 270 VVASN 274
S
Sbjct: 147 SDKSG 151
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 12/141 (8%)
Query: 111 LTTTRVGNISLKIPRCEECDINFPSKMRHTFHL-QHHLEDPDLP--VNFMHECRECGSQF 167
L+ + L P+ + CD F + H+ H+ P+ V + EC G F
Sbjct: 14 LSCKWIDEAQLSRPK-KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSF 72
Query: 168 ADILKHSLETHLSFIHVQDNQLKCTI--CNKENFKNQLSLSIHMRYHENVREYECEI--C 223
K+ L H+ +H + C C K F +L IH R H + ++CE C
Sbjct: 73 K--AKYKLVNHIR-VHTGEKPFPCPFPGCGK-IFARSENLKIHKRTHTGEKPFKCEFEGC 128
Query: 224 KKKFINKSTLKEHSVSHMSVK 244
++F N S K+H H S K
Sbjct: 129 DRRFANSSDRKKHMHVHTSDK 149
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 205 LSIHMRYHENVREYEC--EICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLR 262
L H+R H + Y+C E C +F L H H KPF+C +C SR+ L
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLA 92
Query: 263 AHLKAH 268
H+K H
Sbjct: 93 LHMKRH 98
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 467 KPYTC--EICSKTYTVEGSLLTHYDMHSG-EFYQCDVCFKEFRSSVTLRNHTRRHDN 520
KPY C E C + L HY H+G + +QC VC + F S L H +RH N
Sbjct: 44 KPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 4/95 (4%)
Query: 150 PDLPVNFMHECRECGSQFADILKHSLETHLSFIHVQDNQLKCTI--CNKENFKNQLSLSI 207
PDL +H C G L+ HL H + KCT C+ F L+
Sbjct: 8 PDLEKRRIHYCDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCD-WRFARSDELTR 65
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMS 242
H R H + ++C +C + F L H H +
Sbjct: 66 HYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 59/132 (44%), Gaps = 13/132 (9%)
Query: 182 IHVQDNQLKC--TICNKE--NFKNQLSLSIHMRYHENVREYEC--EICKKKFINKSTLKE 235
IH + + C C++E FK Q L +HMR H + ++C E C+K + LK
Sbjct: 28 IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKT 87
Query: 236 HSVSHMSVKPFKC--EICGHYLSRASRLRAHLKAHSVVASNNKVQNCKKCFKCCQVFPSN 293
H SH KP+ C E C S AS H + SN K CK C ++
Sbjct: 88 HLRSHTGEKPYMCEHEGCSKAFSNASDRAKH---QNRTHSNEKPYVCK--LPGCTKRYTD 142
Query: 294 EENLRKHFEKVH 305
+LRKH + VH
Sbjct: 143 PSSLRKHVKTVH 154
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 467 KPYTC--EICSKTYTVEGSLLTHYDMHSGEF-YQC--DVCFKEFRSSVTLRNHTRR-HDN 520
KP+ C E C K+Y+ +L TH H+GE Y C + C K F ++ H R H N
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN 125
Query: 521 ---FSCD--ECSVECQDLNALRMHTLREHG 545
+ C C+ D ++LR H HG
Sbjct: 126 EKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 498 CDVCFKEFRSSVTLRNHTRRHDNFSCDECSVECQDLNALRMHTLREH-----GYKILACE 552
C + F++ L H RRH +C+ E + R+ L+ H G K CE
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE 101
Query: 553 --KCDVKFTHKALLAEHINTKHNTDVTLKCQL 582
C F++ + A+H N H+ + C+L
Sbjct: 102 HEGCSKAFSNASDRAKHQNRTHSNEKPYVCKL 133
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 157 MHECRECGSQFADILKHSLETHLSFIHVQDNQLKCTI--CNKENFKNQLSLSIHMRYHEN 214
+H C ECG F + K L+ H +H + +CT C K F +L H+R H
Sbjct: 34 VHVCAECGKAFVESSK--LKRH-QLVHTGEKPFQCTFEGCGKR-FSLDFNLRTHVRIHTG 89
Query: 215 VREYEC--EICKKKFINKSTLKEHSVSHMSVK 244
R Y C + C KKF + LK H ++H K
Sbjct: 90 DRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 199 FKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC--EICGHYLS 256
F++ ++ H+ H R + C C K F+ S LK H + H KPF+C E CG S
Sbjct: 17 FRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFS 75
Query: 257 RASRLRAHLKAHS 269
LR H++ H+
Sbjct: 76 LDFNLRTHVRIHT 88
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 161 RECGSQFAD--ILKHSLETHLSFIHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVREY 218
+ C F D ++ L TH +HV C C K F L H H + +
Sbjct: 11 KGCTKMFRDNSAMRKHLHTHGPRVHV------CAECGKA-FVESSKLKRHQLVHTGEKPF 63
Query: 219 EC--EICKKKFINKSTLKEHSVSHMSVKPFKC--EICGHYLSRASRLRAHLKAHSVVASN 274
+C E C K+F L+ H H +P+ C + C ++++ L++H+ H+ +N
Sbjct: 64 QCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 467 KPYTC--EICSKTYTVEGSLLTHYDMHSGEF-YQC--DVCFKEFRSSVTLRNHTRRH 518
KP+ C E C K ++++ +L TH +H+G+ Y C D C K+F S L++H H
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 9/105 (8%)
Query: 474 CSKTYTVEGSLLTHYDMHSGEFYQCDVCFKEFRSSVTLRNHTRRHDNFSCDECSVE---- 529
C+K + ++ H H + C C K F S L+ H H +C+ E
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 530 --CQDLNALRMHTLREHGYKILAC--EKCDVKFTHKALLAEHINT 570
D N LR H G + C + C+ KF L HI T
Sbjct: 73 RFSLDFN-LRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 116
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 469 YTCEICSKTYTVEGSLLTHYDMHSGEF-YQC--DVCFKEFRSSVTLRNHTRRHDN---FS 522
+ C C K + L H +H+GE +QC + C K F LR H R H +
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYV 94
Query: 523 C--DECSVECQDLNALRMHTL 541
C D C+ + L+ H L
Sbjct: 95 CPFDGCNKKFAQSTNLKSHIL 115
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 162 ECGSQFADILKHSLETHLSFIHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVREYECE 221
+CG F K + H+S +H+ C +C K+ FK + L HM+ H ++ YEC
Sbjct: 14 QCGKSFTH--KSQRDRHMS-MHLGLRPYGCGVCGKK-FKMKHHLVGHMKIHTGIKPYECN 69
Query: 222 ICKKKFINKSTLKEHSVS 239
IC K+F+ + + H S
Sbjct: 70 ICAKRFMWRDSFHRHVTS 87
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 197 ENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCEIC 251
++F ++ HM H +R Y C +C KKF K L H H +KP++C IC
Sbjct: 17 KSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNIC 71
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 464 LKMKPYTCEICSKTYTVEGSLLTHYDMHSG-EFYQCDVCFKEF 505
L ++PY C +C K + ++ L+ H +H+G + Y+C++C K F
Sbjct: 33 LGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRF 75
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 218 YECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHSVV 271
Y C+ C K F +KS H H+ ++P+ C +CG L H+K H+ +
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSG-EFYQCDVCFKEFRSSVTLRNHTRRHDNFSCDE 525
K Y C+ C K++T + H MH G Y C VC K+F+ L H + H E
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYE 67
Query: 526 CSV 528
C++
Sbjct: 68 CNI 70
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 216 REYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHSVVA 272
R Y+C+ C K F + S L +H +H KP+KC+ CG + S L H + H+
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSG 73
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 188 QLKCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKP 245
+ KC C K +F + LS H R H + Y+C+ C K FI +S L H H P
Sbjct: 18 RYKCDECGK-SFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 462 QLLKMKPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
Q + + Y C+ C K+++ L H H+GE Y+CD C K F L H R H
Sbjct: 12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 496 YQCDVCFKEFRSSVTLRNHTRRHDN---FSCDECS 527
Y+CD C K F S L H R H + CDEC
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECG 53
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 205 LSIHMRYHENVREYECEI--CKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLR 262
L H+R H + Y C+ C KF L H H +PF+C+ C SR+ L
Sbjct: 23 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA 82
Query: 263 AHLKAH 268
H+K H
Sbjct: 83 LHMKRH 88
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 465 KMKPYTCEI--CSKTYTVEGSLLTHYDMHSGEF-YQCDV--CFKEFRSSVTLRNHTRRHD 519
+ +TC+ C KTYT L H H+GE Y CD C +F S L H R+H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 520 N---FSCDECSVECQDLNALRMHTLR 542
F C +C + L +H R
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKR 87
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 467 KPYTCEI--CSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
KPY C+ C + L HY H+G +QC C + F S L H +RH
Sbjct: 34 KPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 419 SVTCSVCEKAFSSKENCKAHYTRQHGNKEPKE-PKSGEGLPALEQLLKMKP--------- 468
V C C K F SK K H R+H ++P E PK G+ E LL+ +
Sbjct: 7 GVECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQ 65
Query: 469 -YTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNH 514
+TC +C +T+ L H H+GE Y+C C ++F L++H
Sbjct: 66 VFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 159 ECRECGSQFADILKHSLETHLSFIHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVRE- 217
EC C +F + K+ L+ H + H + +C C K F+ + L R N E
Sbjct: 9 ECPTCHKKF--LSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQ 65
Query: 218 -YECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHL-KAHSVVASN 274
+ C +C++ F + L+ H VSH P+KC C + L++H+ K HS +S
Sbjct: 66 VFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPSSG 124
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 219 ECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHSVVASNNKVQ 278
EC C KKF++K LK H+ H KPF+C CG R L H +A + + + +V
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH-EARNCMNRSEQVF 67
Query: 279 NCKKC 283
C C
Sbjct: 68 TCSVC 72
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 7/110 (6%)
Query: 471 CEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFK-EFRSSVTLRNHTRRHDN-----FSC 523
C C K + + L H H+GE ++C C K FR L + R N F+C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 524 DECSVECQDLNALRMHTLREHGYKILACEKCDVKFTHKALLAEHINTKHN 573
C + LR+H + G C C +F K L H+ H+
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 17/99 (17%)
Query: 497 QCDVCFKEFRSSVTLRNHTRRHDN---FSCDECSVECQDLNALRMHTLREH--------G 545
+C C K+F S L+ H R+H F C +C +C R L EH
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCG-KC----YFRKENLLEHEARNCMNRS 63
Query: 546 YKILACEKCDVKFTHKALLAEHINTKHNTDVTLKCQLCN 584
++ C C F + L H+ H ++ KC C+
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHM-VSHTGEMPYKCSSCS 101
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 205 LSIHMRYHENVREYECEI--CKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLR 262
L H+R H + Y C+ C KF L H H +PF+C+ C SR+ L
Sbjct: 24 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA 83
Query: 263 AHLKAH 268
H+K H
Sbjct: 84 LHMKRH 89
Score = 33.9 bits (76), Expect = 0.24, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 469 YTCEI--CSKTYTVEGSLLTHYDMHSGEF-YQCDV--CFKEFRSSVTLRNHTRRHDN--- 520
+TC+ C KTYT L H H+GE Y CD C +F S L H R+H
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 521 FSCDECSVECQDLNALRMHTLR 542
F C +C + L +H R
Sbjct: 67 FQCQKCDRAFSRSDHLALHMKR 88
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 467 KPYTCEI--CSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
KPY C+ C + L HY H+G +QC C + F S L H +RH
Sbjct: 35 KPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 215 VREYEC--EICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
+R Y C E C ++F L H H KPF+C IC SR+ L H++ H+
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 465 KMKPYTC--EICSKTYTVEGSLLTHYDMHSGE-FYQCDVCFKEFRSSVTLRNHTRRH 518
KM+PY C E C + ++ L H +H+G+ +QC +C + F S L H R H
Sbjct: 16 KMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 466 MKPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNH 514
MKP+ C IC + ++ L TH H+GE + CD+C ++F S + H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 215 VREYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAH 264
++ ++C IC + F L H +H KPF C+ICG +R+ + H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 189 LKCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEH 236
+C IC + NF L+ H+R H + + C+IC +KF K H
Sbjct: 4 FQCRICMR-NFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 243 VKPFKCEICGHYLSRASRLRAHLKAHS 269
+KPF+C IC SR+ L H++ H+
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHT 27
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN 520
KPY C C K ++ L+ H +H+GE Y+C C K F + L NH R H +
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%)
Query: 216 REYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHSVVASNN 275
+ Y C C K F S L +H H KP+KC CG S+ S L H + H+ S+
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSSG 72
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 219 ECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
EC C K F + L H +H KP+KCE C + ++ + LR HL+ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 190 KCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSH 240
+C+ C K F++ L+IH+R H + Y+CE C+ K++L+ H H
Sbjct: 6 ECSYCGK-FFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 497 QCDVCFKEFRSSVTLRNHTRRHDN---FSCDECSVECQDLNALRMHTLREH 544
+C C K FRS+ L H R H + C+ C +LR H R H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 216 REYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
R + C C K + + S L H +H+ +P C CG S + HLK H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSG-EFYQCDVCFKEFRSSVTLRNHTRRHDN 520
+P+ C C KTY L H H G C C K FR + H + H N
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 191 CTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMS 242
C C K +++ LS H R H R C C K F ++S + H H +
Sbjct: 7 CNFCGK-TYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 22/78 (28%)
Query: 419 SVTCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTY 478
S C VC +AF+ +E+ K HY R H N+ KPY C +C++ +
Sbjct: 2 SFVCEVCTRAFARQEHLKRHY-RSHTNE--------------------KPYPCGLCNRAF 40
Query: 479 TVEGSLLTHYD-MHSGEF 495
T L+ H +HSG
Sbjct: 41 TRRDLLIRHAQKIHSGNL 58
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 218 YECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHL-KAHS 269
+ CE+C + F + LK H SH + KP+ C +C +R L H K HS
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 191 CTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHS 237
C +C + F Q L H R H N + Y C +C + F + L H+
Sbjct: 5 CEVCTRA-FARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 469 YTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRR 517
+ CE+C++ + + L HY H+ E Y C +C + F L H ++
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C++C K + V L+ H+ +HSGE
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGE 38
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 210 RYHENVREYECEICKKKFINKSTLKEHSVSHMS--VKPFKCEICGHYLSRASRLRAHLK 266
R H + YEC IC +F T+K H + + V F C C ++R S L HL+
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 466 MKPYTCEICSKTYTVEGSLLTHYDMHSG 493
M+PY+C +C K ++++ + THY +H+G
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSG 493
KPY C+ C K ++ +GSL+ H +H+G
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTG 36
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 466 MKPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KP+ C C K++ +G+L+TH +H+GE
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGE 38
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 501 CFKEFRSSVTLRNHTRRHDN---FSCDE--CSVECQDLNALRMHTLREHGYKILACEK-- 553
C + + L+ H +H F C E C L+ L H+L G K C+
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 554 CDVKFTHKALLAEHINTKHNTDVTL 578
CD++FT KA + +H N HN + +
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICV 104
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 199 FKNQLSLSIHMRYHENVREYEC--EICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLS 256
+ L H+ H + + C E C+K F + L HS++H K F C+ G L
Sbjct: 24 YNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLR 83
Query: 257 RASRLRAHLKAHSVVASNNKV-------QNCKKCFK 285
+ +A++K H N K+ +NC K FK
Sbjct: 84 FTT--KANMKKHFNRFHNIKICVYVCHFENCGKAFK 117
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C++CSK +T + L H H+GE
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGE 38
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 216 REYECEICKKKFINKSTLKEHSVSHMSVKP 245
+ YEC++C K F K+ L +H +H KP
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C C K ++V SL TH +H+G+
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGK 38
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 501 CFKEFRSSVTLRNHTRRHDN---FSCDE--CSVECQDLNALRMHTLREHGYKILACEK-- 553
C + + L+ H +H F C E C L+ L H+L G K C+
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 554 CDVKFTHKALLAEHINTKHN 573
CD++FT KA + +H N HN
Sbjct: 71 CDLRFTTKANMKKHFNRFHN 90
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 199 FKNQLSLSIHMRYHENVREYEC--EICKKKFINKSTLKEHSVSHMSVKPFKCEICG 252
+ L H+ H + + C E C+K F + L HS++H K F C+ G
Sbjct: 15 YNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 466 MKPYTCEICSKTYTVEGSLLTHYDMHSGE 494
+KPY C C K ++V SL TH +H+GE
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGE 38
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 33.1 bits (74), Expect = 0.43, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSG 493
KPY C C K +T + L+ H +H+G
Sbjct: 9 KPYVCSDCGKAFTFKSQLIVHQGIHTG 35
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C++C K ++ SL H +HSGE
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGE 38
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 216 REYECEICKKKFINKSTLKEHSVSHMSVKP 245
+ YEC++C+K F + ++L +H H KP
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 33.1 bits (74), Expect = 0.46, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSG 493
KPY C+ C K+++ GSL H +H+G
Sbjct: 9 KPYQCKECGKSFSQRGSLAVHERLHTG 35
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C IC K++T + L H +H+GE
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGE 38
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 216 REYECEICKKKFINKSTLKEHSVSHMSVKP 245
+ YEC IC K F KS L H H KP
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 26/108 (24%)
Query: 469 YTCEICSKTYTVEGSLLTHYDMHSGE-FYQCDVCFKEFRSSVTLRNHTRRHDNFSCDECS 527
Y C +C ++Y SL H+++HS E Y C C K F L + +H+
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVF----PLAEYRTKHE-------- 70
Query: 528 VECQDLNALRMHTLREHGYKILACEKCDVKFTHKALLAEHINTKHNTD 575
+H E Y+ LAC K F + ++ HI + H+ D
Sbjct: 71 ----------IHHTGERRYQCLACGK---SFINYQFMSSHIKSVHSQD 105
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 191 CTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCEI 250
C +C K ++ SL H H ++Y C C+K F +H + H + ++C
Sbjct: 25 CIVC-KRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLA 83
Query: 251 CGHYLSRASRLRAHLKA 267
CG + +H+K+
Sbjct: 84 CGKSFINYQFMSSHIKS 100
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 174 SLETHLSFIHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTL 233
SL H + IH + + C C K F + H +H R Y+C C K FIN +
Sbjct: 37 SLRRHFN-IHSWEKKYPCRYCEKV-FPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFM 94
Query: 234 KEHSVSHMSVKP 245
H S S P
Sbjct: 95 SSHIKSVHSQDP 106
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 16/30 (53%)
Query: 216 REYECEICKKKFINKSTLKEHSVSHMSVKP 245
R YEC C K FI KSTL H H KP
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C C K +T +L TH +H+GE
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGE 38
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
+PY C +C K +T +L+ H +H+GE
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGE 38
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.69, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSG 493
KPY+C C K +T + L+ H +H+G
Sbjct: 9 KPYSCNECGKAFTFKSQLIVHKGVHTG 35
>pdb|2GQJ|A Chain A, Solution Structure Of The Two Zf-C2h2 Like
Domains(493-575) Of Human Zinc Finger Protein Kiaa1196
Length = 98
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 191 CTICNKENFKNQLSLSIHMRYHENVRE-YECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
C CN K + L HM + +++ +C+ C+K+F +K+ L H+++ S KP E
Sbjct: 27 CPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDAE 86
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 221 EICKKKFINKSTLKEHSVSHMSVKPFKC--EICGHYLSRASRLRAHLKAHS 269
E C K F + LK H SH P++C E C S SRL+ H K H+
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.0 bits (71), Expect = 0.98, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C C K + ++ L+ H +H+GE
Sbjct: 9 KPYVCNECGKAFGLKSQLIIHERIHTGE 36
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 221 EICKKKFINKSTLKEHSVSHMSVKPFKC--EICGHYLSRASRLRAHLKAHS 269
E C K F + LK H SH P++C E C S SRL+ H K H+
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 217 EYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHL--KAHS 269
+Y CE C + S LK+H +H V+P+ C C L H+ KAHS
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KP+ C C K++++ L TH +H+GE
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGE 38
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C+ C K + + L+ H +H+GE
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGE 38
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 223 CKKKFINKSTLKEHSVSHMSVKPFKCEI--CGHYLSRASRLRAHLKAH 268
C K + S LK H+ +H KPF C C +R+ L H + H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C++C K++ SL H +H+GE
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGE 38
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 496 YQCDVCFKEFRSSVTLRNHTRRHDN 520
Y+CDVC K FR +L H R H
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 418 KSVTCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSG 454
K CSVC KAFS +++ H R H K+P P SG
Sbjct: 11 KPYECSVCGKAFSHRQSLSVH-QRIHSGKKPSGPSSG 46
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C +C K ++ SL H +HSG+
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGK 38
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 216 REYECEICKKKFINKSTLKEHSVSHMSVKP 245
+ ++C+IC K F +S L HS+ H + KP
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 244 KPFKCEICGHYLSRASRLRAHLKAHSV 270
KPFKC+ICG SRL H H+
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTA 37
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 466 MKPYTCEICSKTYTVEGSLLTHYDMHSG 493
+KPY C C+KT++++ L+ H H+G
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTG 37
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 215 VREYECEICKKKFINKSTLKEHSVSHMSVKP 245
V+ Y C C K F KS L H SH VKP
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C+ C K++ LL H +HSGE
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGE 38
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C C K +T L H+ +H+GE
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGE 38
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 216 REYECEICKKKFINKSTLKEHSVSHMSVKP 245
+ Y CE C K FI+ S L+EH H KP
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY CE C K + + L H +H+GE
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGE 38
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C C K + SL H HSGE
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGE 38
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C C K + ++ L+ H H+GE
Sbjct: 9 KPYECTDCGKAFGLKSQLIIHQRTHTGE 36
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C C K ++ + L+ H +H+GE
Sbjct: 9 KPYGCNECGKDFSSKSYLIVHQRIHTGE 36
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 244 KPFKCEICGHYLSRASRLRAHLKAHSVVASNN 275
+PFKC CG R S L HL+ HS S+
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREKSSG 42
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 244 KPFKCEICGHYLSRASRLRAHLKAHS 269
KPFKCE CG ++ S+L +H + H+
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHT 36
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KP+ CE C K +T L +H +H+GE
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGE 38
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 496 YQCDVCFKEFRSSVTLRNHTRRHDN 520
Y+CDVC KEF S L+ H R H
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 417 VKSVTCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSG 454
VK CS C KAF SK H R H ++P P SG
Sbjct: 8 VKPYGCSECGKAFRSKSYLIIH-MRTHTGEKPSGPSSG 44
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 466 MKPYTCEICSKTYTVEGSLLTHYDMHSGE 494
+KPY C C K + + L+ H H+GE
Sbjct: 8 VKPYGCSECGKAFRSKSYLIIHMRTHTGE 36
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 239 SHMSVKPFKCEICGHYLSRASRLRAHLKAHSV 270
S S KPFKC +C + S L+AH+ HS
Sbjct: 3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHST 34
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C+ C K +T L H +H+GE
Sbjct: 9 KPYVCQECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY CE C K + L TH+ +H+GE
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGE 38
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KP C +C K +T SL+ H H+GE
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGE 28
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 244 KPFKCEICGHYLSRASRLRAHLKAHS 269
KP+KCE CG + + LRAH+ H+
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHT 35
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 465 KMKPYTCEICSKTYTVEGSLLTHYDMHSGE 494
+ KPY C C K + L+ H HSGE
Sbjct: 9 REKPYECSECGKAFIRNSQLIVHQRTHSGE 38
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 454 GEGLPALEQLLKMKPYTCEICSKTYTVEGSLLTHYDM-HSGEFYQCDVCFKEFRSSVTLR 512
GEG L + + C +C +++ +G+ H + H+ + + C C F SS L
Sbjct: 14 GEGAGVLGLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLT 73
Query: 513 NHTRR 517
H +
Sbjct: 74 RHINK 78
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C C K + + +TH +H+GE
Sbjct: 9 KPYVCTECGKAFIRKSHFITHERIHTGE 36
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY CE C K Y + +L H +H+GE
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGE 38
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 244 KPFKCEICGHYLSRASRLRAHLKAHS 269
KP+KC CG + SRLR H K H+
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHT 36
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C C K++T + L H H+GE
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C C K +T L+ H +H+GE
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGE 38
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 469 YTCEICSKTYTVEGSLLTHY---DMHSGEFYQCDVCFKEFRSSVTLRNHTR 516
Y C++CS+ YT + HY + + Y C CFKEF + H +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 468 PYTCEICSKTYTVEGSLLTHYDMHSGE 494
P C C K +T G+L H +HSGE
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGE 28
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C C K ++ + L+ H HSGE
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGE 38
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 418 KSVTCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSG 454
K CS C KAFSSK H R H ++P P SG
Sbjct: 11 KPYGCSECGKAFSSKSYLIIH-MRTHSGEKPSGPSSG 46
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 15/30 (50%)
Query: 216 REYECEICKKKFINKSTLKEHSVSHMSVKP 245
R YEC C K F KSTL H H KP
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 244 KPFKCEICGHYLSRASRLRAHLKAH 268
KP+ C +CG R R+ H+++H
Sbjct: 9 KPYSCPVCGLRFKRKDRMSYHVRSH 33
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C C K + +L TH +H+GE
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGE 38
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C C K + + +L+ H H+GE
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGE 38
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 418 KSVTCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSG 454
K CS C+KAF++K N H R H ++P P SG
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQ-RTHTGEKPSGPSSG 46
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 466 MKPYTCEICSKTYTVEGSLLTHYDMHSGE 494
MKPY C C K + + L+ H H+GE
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHS 492
KPY C C K +T+ +L+ H +H+
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHT 36
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C C K +T L H +H+GE
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGE 38
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KP+ CE C K +T L +H +H+GE
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGE 38
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C C K +T L H +H+GE
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGE 38
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 465 KMKPYTCEICSKTYTVEGSLLTHYDMHSGE 494
K KPY C C K + +L TH +H+GE
Sbjct: 9 KEKPYKCYECGKAFRTRSNLTTHQVIHTGE 38
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C+ C KT+ G L H +H+GE
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGE 38
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KP+ C+ C K++ +L +H +H+GE
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGE 38
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C C K +T + L H H+GE
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KP+ C C K+++ L+ H +H+GE
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGE 38
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 28.9 bits (63), Expect = 7.5, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 466 MKPYTCEICSKTYTVEGSLLTHYDMHSGE 494
MKPY C C + + G+L H +H+GE
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGE 29
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C C K + + +L H +H+GE
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGE 38
>pdb|2ELX|A Chain A, Solution Structure Of The 8th C2h2 Zinc Finger Of Mouse
Zinc Finger Protein 406
Length = 35
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 496 YQCDVCFKEFRSSVTLRNHTR 516
Y C +C K+F SS+ LR+H R
Sbjct: 8 YVCALCLKKFVSSIRLRSHIR 28
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 492 SGEFYQCDVCFKEFRSSVTLRNHTRRH 518
SG+ + CD+C K+F+S TL++H H
Sbjct: 6 SGKTHLCDMCGKKFKSKGTLKSHKLLH 32
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 163 CGSQFADILKHSLETHLSFIHVQDNQLKCT--ICNKE-NFKNQLSLSIHMRYHENVREYE 219
CG F++ + L H + H+ C C K NFK L HM+ H + R+Y
Sbjct: 15 CGRIFSN--RQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKE--HMKLHSDTRDYI 70
Query: 220 CEI 222
CE
Sbjct: 71 CEF 73
>pdb|2GAI|A Chain A, Structure Of Full Length Topoisomerase I From Thermotoga
Maritima In Triclinic Crystal Form
pdb|2GAI|B Chain B, Structure Of Full Length Topoisomerase I From Thermotoga
Maritima In Triclinic Crystal Form
pdb|2GAJ|A Chain A, Structure Of Full Length Topoisomerase I From Thermotoga
Maritima In Monoclinic Crystal Form
pdb|2GAJ|B Chain B, Structure Of Full Length Topoisomerase I From Thermotoga
Maritima In Monoclinic Crystal Form
Length = 633
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
Query: 161 RECGSQFADILKHSLETHLSFIHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVREY-- 218
R G + +L + +++LS VQ LK +C++E ++ + +YH +
Sbjct: 145 RIVGYSLSPVLWRNFKSNLSAGRVQSATLKL-VCDRER---EILRFVPKKYHRITVNFDG 200
Query: 219 ---ECEICKKKFINKSTLKE-HSVSHMSVKPFKCEI 250
E ++ +KKF + TLKE S+ + V+ K +
Sbjct: 201 LTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSV 236
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C C KT++ + L H H+GE
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGE 38
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 244 KPFKCEICGHYLSRASRLRAHLKAHSVVASNN 275
KP+ CEICG L++HL+ H+ ++
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,513,780
Number of Sequences: 62578
Number of extensions: 774746
Number of successful extensions: 2732
Number of sequences better than 100.0: 157
Number of HSP's better than 100.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1832
Number of HSP's gapped (non-prelim): 777
length of query: 597
length of database: 14,973,337
effective HSP length: 104
effective length of query: 493
effective length of database: 8,465,225
effective search space: 4173355925
effective search space used: 4173355925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)