RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12199
(597 letters)
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 59.1 bits (144), Expect = 2e-11
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 204 SLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHM--SVKPFKCEICGHYLSRASRL 261
S R H + YEC IC +F T+K H + +V F C C ++R S L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 262 RAHLK 266
HL+
Sbjct: 62 GVHLR 66
Score = 54.8 bits (133), Expect = 6e-10
Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF---YQCDVCFKEFRSSVTLRNHTRRH 518
KPY C IC +T G++ H E + C C L H R+
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQ 68
Score = 44.4 bits (106), Expect = 2e-06
Identities = 13/75 (17%), Positives = 18/75 (24%), Gaps = 20/75 (26%)
Query: 421 TCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTV 480
C +C F+ K H Q E + + C C
Sbjct: 17 ECYICHARFTQSGTMKMH-ILQK---------HTE---------NVAKFHCPHCDTVIAR 57
Query: 481 EGSLLTHY-DMHSGE 494
+ L H HS
Sbjct: 58 KSDLGVHLRKQHSYS 72
Score = 42.9 bits (102), Expect = 9e-06
Identities = 21/94 (22%), Positives = 30/94 (31%), Gaps = 28/94 (29%)
Query: 482 GSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDNFSCDECSVECQDLNALRMHT 540
GS + HSGE Y+C +C F S T++ H +
Sbjct: 1 GSSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQK---------------------- 38
Query: 541 LREHG--YKILACEKCDVKFTHKALLAEHINTKH 572
H C CD K+ L H+ +H
Sbjct: 39 ---HTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 42.5 bits (101), Expect = 1e-05
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 232 TLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHSVVASNNKVQNCKKCFKCCQVFP 291
+ +H KP++C IC +++ ++ H+ N +C C
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKH--TENVAKFHCPHCDTVI---- 55
Query: 292 SNEENLRKHFEKVH 305
+ + +L H K H
Sbjct: 56 ARKSDLGVHLRKQH 69
Score = 37.5 bits (88), Expect = 9e-04
Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 34/81 (41%)
Query: 158 HECRECGSQFADILKHSLETHLSFIHVQDNQLKCTICNKENFKNQLSLSIHMRYH--ENV 215
+EC C ++F T ++ +H+ ENV
Sbjct: 16 YECYICHARF---------TQSG-----------------------TMKMHILQKHTENV 43
Query: 216 REYECEICKKKFINKSTLKEH 236
++ C C KS L H
Sbjct: 44 AKFHCPHCDTVIARKSDLGVH 64
Score = 29.0 bits (66), Expect = 0.68
Identities = 12/59 (20%), Positives = 15/59 (25%), Gaps = 6/59 (10%)
Query: 125 RCEECDINFPSKMRHTFHLQHHLEDPDLPVNFMHECRECGSQFADILKHSLETHLSFIH 183
C C F H+ + C C + A K L HL H
Sbjct: 17 ECYICHARFTQSGTMKMHILQKHTENVAK----FHCPHCDTVIAR--KSDLGVHLRKQH 69
Score = 27.9 bits (63), Expect = 2.2
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 421 TCSVCEKAFSSKENCKAHYTRQHGNKEP 448
C C+ + K + H +QH P
Sbjct: 47 HCPHCDTVIARKSDLGVHLRKQHSYSGP 74
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 60.8 bits (148), Expect = 3e-11
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 15/124 (12%)
Query: 158 HECRECGSQFADILKHSLETHLSFIHVQ--------DNQLKCTICNKENFKNQLSLSIHM 209
+ C F+ H L TH++ HV +C K +FK + L H+
Sbjct: 26 RPKKSCDRTFST--MHELVTHVTMEHVGGPEQNNHVCYWEECPREGK-SFKAKYKLVNHI 82
Query: 210 RYHENVREYECEI--CKKKFINKSTLKEHSVSHMSVKPFKCEI--CGHYLSRASRLRAHL 265
R H + + C C K F LK H +H KPFKCE C + +S + H+
Sbjct: 83 RVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142
Query: 266 KAHS 269
H+
Sbjct: 143 HVHT 146
Score = 56.1 bits (136), Expect = 1e-09
Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 11/131 (8%)
Query: 125 RCEECDINFPSKMRHTFHLQ-HHLEDP--DLPVNFMHECRECGSQFADILKHSLETHLSF 181
+ CD F + H+ H+ P + V + EC G F K+ L H+
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFK--AKYKLVNHIR- 83
Query: 182 IHVQDNQLKCTI--CNKENFKNQLSLSIHMRYHENVREYECEI--CKKKFINKSTLKEHS 237
+H + C C K F +L IH R H + ++CE C ++F N S K+H
Sbjct: 84 VHTGEKPFPCPFPGCGKI-FARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142
Query: 238 VSHMSVKPFKC 248
H S K
Sbjct: 143 HVHTSDKSGPS 153
Score = 48.1 bits (115), Expect = 9e-07
Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 21/122 (17%)
Query: 418 KSVTCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLP---------ALEQLLK-M- 466
S C++ FS+ H T +H + A +L+ +
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR 83
Query: 467 -----KPYTCEI--CSKTYTVEGSLLTHYDMHSGEF-YQCDV--CFKEFRSSVTLRNHTR 516
KP+ C C K + +L H H+GE ++C+ C + F +S + H
Sbjct: 84 VHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMH 143
Query: 517 RH 518
H
Sbjct: 144 VH 145
Score = 45.7 bits (109), Expect = 5e-06
Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 19/122 (15%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE----------FYQCDVCFKEFRSSVTLRNHTR 516
+ C +T++ L+TH M + +C K F++ L NH R
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR 83
Query: 517 RHDN---FSCD--ECSVECQDLNALRMHTLREH-GYKILAC--EKCDVKFTHKALLAEHI 568
H F C C L++H R H G K C E CD +F + + +H+
Sbjct: 84 VHTGEKPFPCPFPGCGKIFARSENLKIH-KRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142
Query: 569 NT 570
+
Sbjct: 143 HV 144
Score = 40.3 bits (95), Expect = 4e-04
Identities = 19/108 (17%), Positives = 28/108 (25%), Gaps = 25/108 (23%)
Query: 207 IHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFK---------CEICGHYLSR 257
E + C + F L H P + C G
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKA 74
Query: 258 ASRLRAHLKAHSVVASNNK-----VQNCKKCFKCCQVFPSNEENLRKH 300
+L H++ H + K C K F + ENL+ H
Sbjct: 75 KYKLVNHIRVH----TGEKPFPCPFPGCGKIF-------ARSENLKIH 111
Score = 35.3 bits (82), Expect = 0.018
Identities = 18/78 (23%), Positives = 26/78 (33%), Gaps = 24/78 (30%)
Query: 425 CEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEI--CSKTYTVEG 482
C K F+ EN K H R H +GE KP+ CE C + +
Sbjct: 98 CGKIFARSENLKIH-KRTH---------TGE-----------KPFKCEFEGCDRRFANSS 136
Query: 483 SLLTHYDMHSGEF-YQCD 499
H +H+ +
Sbjct: 137 DRKKHMHVHTSDKSGPSS 154
Score = 31.1 bits (71), Expect = 0.57
Identities = 8/70 (11%), Positives = 16/70 (22%), Gaps = 8/70 (11%)
Query: 225 KKFINKSTLKEHSV---SHMSVKPFKCEICGHYLSRASRLRAHLKAHSV-----VASNNK 276
+ +K+ + + C S L H+ V
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 277 VQNCKKCFKC 286
+ C + K
Sbjct: 62 WEECPREGKS 71
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 61.3 bits (150), Expect = 5e-11
Identities = 47/148 (31%), Positives = 62/148 (41%), Gaps = 20/148 (13%)
Query: 126 CEECDINFPSKMRHTFHLQHHL-----EDPDLPVNFMHECRECGSQFADILKHSLETHLS 180
C EC +F + HL H E P ++C ECG F+D K L H
Sbjct: 24 CPECGKSF----SRSDHLAEHQRTHTGEKP-------YKCPECGKSFSD--KKDLTRHQR 70
Query: 181 FIHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSH 240
H + KC C K +F + +L H R H + Y C C K F + L+ H +H
Sbjct: 71 -THTGEKPYKCPECGK-SFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH 128
Query: 241 MSVKPFKCEICGHYLSRASRLRAHLKAH 268
KP+KC CG SR L H + H
Sbjct: 129 TGEKPYKCPECGKSFSREDNLHTHQRTH 156
Score = 60.9 bits (149), Expect = 6e-11
Identities = 43/148 (29%), Positives = 57/148 (38%), Gaps = 20/148 (13%)
Query: 126 CEECDINFPSKMRHTFHLQHHL-----EDPDLPVNFMHECRECGSQFADILKHSLETHLS 180
C EC +F L H E P ++C ECG F+ + +L H
Sbjct: 52 CPECGKSF----SDKKDLTRHQRTHTGEKP-------YKCPECGKSFSQ--RANLRAHQR 98
Query: 181 FIHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSH 240
H + C C K +F L H R H + Y+C C K F + L H +H
Sbjct: 99 -THTGEKPYACPECGK-SFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTH 156
Query: 241 MSVKPFKCEICGHYLSRASRLRAHLKAH 268
KP+KC CG SR L H + H
Sbjct: 157 TGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 59.8 bits (146), Expect = 2e-10
Identities = 47/155 (30%), Positives = 63/155 (40%), Gaps = 33/155 (21%)
Query: 421 TCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTV 480
C C K+FS ++ H R H +GE KPY C C K+++
Sbjct: 23 ACPECGKSFSRSDHLAEHQ-RTH---------TGE-----------KPYKCPECGKSFSD 61
Query: 481 EGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN---FSCDECS---VECQDL 533
+ L H H+GE Y+C C K F LR H R H ++C EC + L
Sbjct: 62 KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHL 121
Query: 534 NA-LRMHTLREHGYKILACEKCDVKFTHKALLAEH 567
A R HT E YK C +C F+ + L H
Sbjct: 122 RAHQRTHT-GEKPYK---CPECGKSFSREDNLHTH 152
Score = 58.6 bits (143), Expect = 3e-10
Identities = 46/151 (30%), Positives = 60/151 (39%), Gaps = 27/151 (17%)
Query: 422 CSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTVE 481
C C K+FS K++ H R H +GE KPY C C K+++
Sbjct: 52 CPECGKSFSDKKDLTRHQ-RTH---------TGE-----------KPYKCPECGKSFSQR 90
Query: 482 GSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN---FSCDECSVECQDLNALR 537
+L H H+GE Y C C K F LR H R H + C EC + L
Sbjct: 91 ANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLH 150
Query: 538 MHTLREH-GYKILACEKCDVKFTHKALLAEH 567
H R H G K C +C F+ + L H
Sbjct: 151 TH-QRTHTGEKPYKCPECGKSFSRRDALNVH 180
Score = 58.2 bits (142), Expect = 5e-10
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 158 HECRECGSQFADILKHSLETHLSFIHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVRE 217
+ C ECG F+ L H H + KC C K +F ++ L+ H R H +
Sbjct: 22 YACPECGKSFSR--SDHLAEHQR-THTGEKPYKCPECGK-SFSDKKDLTRHQRTHTGEKP 77
Query: 218 YECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
Y+C C K F ++ L+ H +H KP+ C CG S+ + LRAH + H
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH 128
Score = 55.5 bits (135), Expect = 4e-09
Identities = 35/110 (31%), Positives = 45/110 (40%), Gaps = 25/110 (22%)
Query: 421 TCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTV 480
C C K+FS + N +AH R H +GE KPY C C K+++
Sbjct: 79 KCPECGKSFSQRANLRAHQ-RTH---------TGE-----------KPYACPECGKSFSQ 117
Query: 481 EGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN---FSCDEC 526
L H H+GE Y+C C K F L H R H + C EC
Sbjct: 118 LAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPEC 167
Score = 54.8 bits (133), Expect = 7e-09
Identities = 36/109 (33%), Positives = 46/109 (42%), Gaps = 12/109 (11%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN---FS 522
KPY C C K+++ L H H+GE Y+C C K F L H R H +
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYK 79
Query: 523 CDECS---VECQDLNA-LRMHTLREHGYKILACEKCDVKFTHKALLAEH 567
C EC + +L A R HT E Y C +C F+ A L H
Sbjct: 80 CPECGKSFSQRANLRAHQRTHT-GEKPYA---CPECGKSFSQLAHLRAH 124
Score = 52.8 bits (128), Expect = 4e-08
Identities = 33/99 (33%), Positives = 43/99 (43%), Gaps = 22/99 (22%)
Query: 421 TCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTV 480
C C K+FS + +AH R H +GE KPY C C K+++
Sbjct: 107 ACPECGKSFSQLAHLRAHQ-RTH---------TGE-----------KPYKCPECGKSFSR 145
Query: 481 EGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
E +L TH H+GE Y+C C K F L H R H
Sbjct: 146 EDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 49.4 bits (119), Expect = 6e-07
Identities = 20/70 (28%), Positives = 24/70 (34%)
Query: 199 FKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRA 258
S + Y C C K F L EH +H KP+KC CG S
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62
Query: 259 SRLRAHLKAH 268
L H + H
Sbjct: 63 KDLTRHQRTH 72
Score = 47.1 bits (113), Expect = 3e-06
Identities = 60/276 (21%), Positives = 88/276 (31%), Gaps = 99/276 (35%)
Query: 227 FINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHSVVASNNKVQNCKKCFKC 286
S+ + KP+ C CG SR+ L H + H+ K C +C K
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHT----GEKPYKCPECGKS 58
Query: 287 CQVFPSNEENLRKHF-----EKVHFDLEFDEAHFYDVVLKCVYRFRIVQYFLCELCDKTS 341
F S++++L +H EK + C C K+
Sbjct: 59 ---F-SDKKDLTRHQRTHTGEK---------------------------PYKCPECGKSF 87
Query: 342 IHYTYLCLHKKLKHSNLTYGGESP-VCEPCNLTFKNEWQYLVHNRAVH--ELPPEPNSGA 398
L H++ H+ GE P C C +F H R H E
Sbjct: 88 SQRANLRAHQRT-HT-----GEKPYACPECGKSFSQLAHLRAHQR-THTGE--------- 131
Query: 399 GSVLQNNPYPPLRKAKQHVKSVTCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLP 458
PY C C K+FS ++N H R H +GE
Sbjct: 132 ------KPY-------------KCPECGKSFSREDNLHTHQ-RTH---------TGE--- 159
Query: 459 ALEQLLKMKPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C C K+++ +L H H+G+
Sbjct: 160 --------KPYKCPECGKSFSRRDALNVHQRTHTGK 187
Score = 43.2 bits (103), Expect = 7e-05
Identities = 34/125 (27%), Positives = 47/125 (37%), Gaps = 20/125 (16%)
Query: 126 CEECDINFPSKMRHTFHLQHHL-----EDPDLPVNFMHECRECGSQFADILKHSLETHLS 180
C EC +F +L+ H E P + C ECG F+ L H
Sbjct: 80 CPECGKSF----SQRANLRAHQRTHTGEKP-------YACPECGKSFSQ--LAHLRAHQR 126
Query: 181 FIHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSH 240
H + KC C K +F + +L H R H + Y+C C K F + L H +H
Sbjct: 127 -THTGEKPYKCPECGK-SFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Query: 241 MSVKP 245
K
Sbjct: 185 TGKKT 189
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 58.2 bits (142), Expect = 5e-11
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 190 KCTI--CNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFK 247
C + C++ F SL+ H+R H + ++C IC + F L H +H KPF
Sbjct: 6 ACPVESCDR-RFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 248 CEICGHYLSRASRLRAHLKAH 268
C+ICG +R+ + H K H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 55.6 bits (135), Expect = 4e-10
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 22/95 (23%)
Query: 425 CEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTVEGSL 484
C++ FS + H R H +G+ KP+ C IC + ++ L
Sbjct: 12 CDRRFSQSGSLTRH-IRIH---------TGQ-----------KPFQCRICMRNFSRSDHL 50
Query: 485 LTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
TH H+GE + CD+C ++F S + HT+ H
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 45.1 bits (108), Expect = 2e-06
Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 28/107 (26%)
Query: 467 KPYTCEI--CSKTYTVEGSLLTHYDMHSGE-FYQCDVCFKEFRSSVTLRNHTRRHDNFSC 523
+PY C + C + ++ GSL H +H+G+ +QC +C + F S L H
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH--------- 53
Query: 524 DECSVECQDLNALRMHTLREHGYKILACEKCDVKFTHKALLAEHINT 570
+R HT G K AC+ C KF H
Sbjct: 54 ------------IRTHT----GEKPFACDICGRKFARSDERKRHTKI 84
Score = 40.9 bits (97), Expect = 7e-05
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 21/74 (28%)
Query: 421 TCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTV 480
C +C + FS ++ H R H +GE KP+ C+IC + +
Sbjct: 36 QCRICMRNFSRSDHLTTH-IRTH---------TGE-----------KPFACDICGRKFAR 74
Query: 481 EGSLLTHYDMHSGE 494
H +H +
Sbjct: 75 SDERKRHTKIHLRQ 88
Score = 34.0 bits (79), Expect = 0.019
Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 34/80 (42%)
Query: 158 HECRECGSQFADILKHSLETHLSFIHVQDNQLKCTICNKENFKNQLS-LSIHMRYHENVR 216
+CR C F ++ L+ H+R H +
Sbjct: 35 FQCRICMRNF---------------------------------SRSDHLTTHIRTHTGEK 61
Query: 217 EYECEICKKKFINKSTLKEH 236
+ C+IC +KF K H
Sbjct: 62 PFACDICGRKFARSDERKRH 81
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 57.0 bits (139), Expect = 1e-10
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 190 KCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
C IC K +FK +LS H+ H + R Y C+ C K+F KS +K+H+ H KP KC+
Sbjct: 3 DCKICGK-SFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 250 ICGHYLSRASRLRAHLKAH 268
+CG S++S L H + H
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
Score = 50.5 bits (122), Expect = 2e-08
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 22/98 (22%)
Query: 422 CSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTVE 481
C +C K+F H H S +PY C+ C K + +
Sbjct: 4 CKICGKSFKRSSTLSTH-LLIH---------SDT-----------RPYPCQYCGKRFHQK 42
Query: 482 GSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ H +H+GE ++C VC K F S L H+R+H
Sbjct: 43 SDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 43.6 bits (104), Expect = 6e-06
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 218 YECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
++C+IC K F STL H + H +P+ C+ CG + S ++ H H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH 52
Score = 43.6 bits (104), Expect = 7e-06
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 469 YTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN---FSCD 524
+ C+IC K++ +L TH +HS Y C C K F ++ HT H C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 525 EC 526
C
Sbjct: 62 VC 63
Score = 35.1 bits (82), Expect = 0.006
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 21/72 (29%)
Query: 422 CSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTVE 481
C C K F K + K H T H +GE KP+ C++C K ++
Sbjct: 32 CQYCGKRFHQKSDMKKH-TFIH---------TGE-----------KPHKCQVCGKAFSQS 70
Query: 482 GSLLTHYDMHSG 493
+L+TH H+G
Sbjct: 71 SNLITHSRKHTG 82
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 58.3 bits (142), Expect = 1e-10
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 190 KCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEH---SVSHMSVKPF 246
+C C+K F ++ L +H R H + +EC C K + K L EH + + S + F
Sbjct: 9 ECPTCHK-KFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 247 KCEICGHYLSRASRLRAHLKAHSVVASNNKVQNCKKCFKCCQVFPSNEENLRKHFEKVH 305
C +C R LR H+ +H + C C + F +++L+ H K+H
Sbjct: 68 TCSVCQETFRRRMELRLHMVSH----TGEMPYKCSSCSQQ---F-MQKKDLQSHMIKLH 118
Score = 57.9 bits (141), Expect = 2e-10
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 7/109 (6%)
Query: 159 ECRECGSQFADILKHSLETHLSFIHVQDNQLKCTICNKENFKNQLSLSIHMRY---HENV 215
EC C +F K+ L+ H H + +C C K + + +L H + +
Sbjct: 9 ECPTCHKKFLS--KYYLKVHNR-KHTGEKPFECPKCGK-CYFRKENLLEHEARNCMNRSE 64
Query: 216 REYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAH 264
+ + C +C++ F + L+ H VSH P+KC C + L++H
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 57.5 bits (140), Expect = 2e-10
Identities = 35/116 (30%), Positives = 45/116 (38%), Gaps = 28/116 (24%)
Query: 418 KSVTCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKT 477
V C C K F SK K H R+H +GE KP+ C C K
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHN-RKH---------TGE-----------KPFECPKCGKC 44
Query: 478 YTVEGSLLTH---YDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN---FSCDEC 526
Y + +LL H M+ E + C VC + FR + LR H H + C C
Sbjct: 45 YFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSC 100
Score = 53.7 bits (130), Expect = 5e-09
Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 9/109 (8%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN----- 520
C C K + + L H H+GE ++C C K + L H R+
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQ 65
Query: 521 -FSCDECSVECQDLNALRMHTLREH-GYKILACEKCDVKFTHKALLAEH 567
F+C C + LR+H + H G C C +F K L H
Sbjct: 66 VFTCSVCQETFRRRMELRLH-MVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 50.2 bits (121), Expect = 9e-08
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 21/118 (17%)
Query: 126 CEECDINFPSKMRHTFHLQHHL-----EDPDLPVNFMHECRECGSQFADILKHSLETH-- 178
C C F ++L+ H E P EC +CG + K +L H
Sbjct: 10 CPTCHKKF----LSKYYLKVHNRKHTGEKP-------FECPKCGKCYFR--KENLLEHEA 56
Query: 179 LSFIHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEH 236
+ ++ + C++C + F+ ++ L +HM H Y+C C ++F+ K L+ H
Sbjct: 57 RNCMNRSEQVFTCSVCQE-TFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 49.4 bits (119), Expect = 1e-07
Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 23/100 (23%)
Query: 421 TCSVCEKAFSSKENCKAH--YTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTY 478
C C K + KEN H + E + +TC +C +T+
Sbjct: 37 ECPKCGKCYFRKENLLEHEARNCMN---------RSE-----------QVFTCSVCQETF 76
Query: 479 TVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRR 517
L H H+GE Y+C C ++F L++H +
Sbjct: 77 RRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIK 116
Score = 44.4 bits (106), Expect = 9e-06
Identities = 20/47 (42%), Positives = 24/47 (51%)
Query: 218 YECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAH 264
EC C KKF++K LK H+ H KPF+C CG R L H
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
Score = 28.6 bits (65), Expect = 2.3
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 244 KPFKCEICGHYLSRASRLRAHLKAHSVVASNNKVQNCKKCFKCCQVFPSNEENLRKH 300
+C C L+ H + H + K C KC KC + +ENL +H
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKH----TGEKPFECPKCGKC---Y-FRKENLLEH 54
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 58.8 bits (143), Expect = 1e-10
Identities = 41/165 (24%), Positives = 60/165 (36%), Gaps = 35/165 (21%)
Query: 125 RCEECDINFPSKMRHTFHLQHHL--------EDPDLPVNFMHECRECGS-----QFADIL 171
R + C F S+ L HH+ C G F
Sbjct: 5 RWDGCSQEFDSQE----QLVHHINSEHIHGERKE-------FVCHWGGCSRELRPFKA-- 51
Query: 172 KHSLETHLSFIHVQDNQLKCTI--CNKENFKNQLSLSIHMRYHENVREYECE--ICKKKF 227
++ L H+ H + KCT C K + +L H+R H + Y CE C K F
Sbjct: 52 QYMLVVHM-RRHTGEKPHKCTFEGCRKS-YSRLENLKTHLRSHTGEKPYMCEHEGCSKAF 109
Query: 228 INKSTLKEHSV-SHMSVKPFKCEI--CGHYLSRASRLRAHLKAHS 269
N S +H +H + KP+ C++ C + S LR H+K
Sbjct: 110 SNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 51.8 bits (125), Expect = 5e-08
Identities = 33/166 (19%), Positives = 56/166 (33%), Gaps = 34/166 (20%)
Query: 421 TCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEIC-----S 475
C + F S+E H +H K + C
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEH-------IHGER-----------KEFVCHWGGCSREL 46
Query: 476 KTYTVEGSLLTHYDMHSGEF-YQCDV--CFKEFRSSVTLRNHTRRHDN---FSCDE--CS 527
+ + + L+ H H+GE ++C C K + L+ H R H + C+ CS
Sbjct: 47 RPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCS 106
Query: 528 VECQDLNALRMHTLREH-GYKILACEK--CDVKFTHKALLAEHINT 570
+ + H R H K C+ C ++T + L +H+ T
Sbjct: 107 KAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 45.7 bits (109), Expect = 5e-06
Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 18/123 (14%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYD---MHSGEF-YQCDVC-----FKEFRSSVTLRNHTRR 517
+ CS+ + + L+ H + +H + C + F++ L H RR
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 518 HDN---FSCD--ECSVECQDLNALRMHTLREH-GYKILACE--KCDVKFTHKALLAEHIN 569
H C C L L+ H LR H G K CE C F++ + A+H N
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRLENLKTH-LRSHTGEKPYMCEHEGCSKAFSNASDRAKHQN 120
Query: 570 TKH 572
H
Sbjct: 121 RTH 123
Score = 45.7 bits (109), Expect = 6e-06
Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 27/100 (27%)
Query: 425 CEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCE--ICSKTYTVEG 482
C K++S EN K H R H +GE KPY CE CSK ++
Sbjct: 75 CRKSYSRLENLKTH-LRSH---------TGE-----------KPYMCEHEGCSKAFSNAS 113
Query: 483 SLLTHYD-MHSGE-FYQCDV--CFKEFRSSVTLRNHTRRH 518
H + HS E Y C + C K + +LR H +
Sbjct: 114 DRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 39.9 bits (94), Expect = 5e-04
Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 22/71 (30%)
Query: 425 CEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEI--CSKTYTVEG 482
C KAFS+ + H R H S E KPY C++ C+K YT
Sbjct: 105 CSKAFSNASDRAKHQNRTH---------SNE-----------KPYVCKLPGCTKRYTDPS 144
Query: 483 SLLTHYDMHSG 493
SL H G
Sbjct: 145 SLRKHVKTVHG 155
Score = 39.1 bits (92), Expect = 0.001
Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 218 YECEICKKKFINKSTLKEHSVS---HMSVKPFKCEICG-HYLSRASRLRAHLKAHSVVAS 273
+ C ++F ++ L H S H K F C G R + + L H +
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 274 NNKVQNCKKCFKCCQVFPSNEENLRKH 300
K C C + + S ENL+ H
Sbjct: 64 GEKPHKCTFE-GCRKSY-SRLENLKTH 88
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 57.0 bits (139), Expect = 1e-10
Identities = 31/98 (31%), Positives = 39/98 (39%), Gaps = 22/98 (22%)
Query: 422 CSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTVE 481
C VC K FS K+ K H R H +G KPY C+ C
Sbjct: 11 CEVCGKCFSRKDKLKTHM-RCH---------TGV-----------KPYKCKTCDYAAADS 49
Query: 482 GSLLTHYDMHSGE-FYQCDVCFKEFRSSVTLRNHTRRH 518
SL H +HS E ++C +C R+S L H R H
Sbjct: 50 SSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 53.2 bits (129), Expect = 3e-09
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 158 HECRECGSQFADILKHSLETHLSFIHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVRE 217
H+C CG F+ K L+TH+ H KC C+ + SL+ H+R H + R
Sbjct: 9 HKCEVCGKCFSR--KDKLKTHMR-CHTGVKPYKCKTCDY-AAADSSSLNKHLRIHSDERP 64
Query: 218 YECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
++C+IC N S L H SH
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 50.1 bits (121), Expect = 4e-08
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN---FS 522
P+ CE+C K ++ + L TH H+G Y+C C S +L H R H + F
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Query: 523 CDEC 526
C C
Sbjct: 67 CQIC 70
Score = 49.3 bits (119), Expect = 9e-08
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 218 YECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
++CE+C K F K LK H H VKP+KC+ C + + +S L HL+ HS
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS 60
Score = 40.5 bits (96), Expect = 1e-04
Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 22/78 (28%)
Query: 422 CSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTVE 481
C C+ A + + H R H S E +P+ C+IC
Sbjct: 39 CKTCDYAAADSSSLNKHL-RIH---------SDE-----------RPFKCQICPYASRNS 77
Query: 482 GSLLTHYDMHSGE-FYQC 498
L H H+G+
Sbjct: 78 SQLTVHLRSHTGDSGPSS 95
Score = 28.9 bits (66), Expect = 1.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 239 SHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
S S P KCE+CG SR +L+ H++ H+
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHT 32
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 63.3 bits (153), Expect = 2e-10
Identities = 54/373 (14%), Positives = 106/373 (28%), Gaps = 97/373 (26%)
Query: 104 QAMNP--TMLTTTR-------VGNISLKIPRCEECDINF-PSKMRHTFHLQHHLEDPDLP 153
A N +L TTR + + + + P +++ DLP
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 154 VNFMHECRECG----SQFADILKHSLETHLSFIHVQDNQLKCTICNKENFKNQLSLSIHM 209
E S A+ ++ L T ++ HV ++L I E+ N L + +
Sbjct: 320 ----REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII---ESSLNVLEPAEYR 372
Query: 210 RYH-------ENVR--------------EYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ + + + + K S +++ K
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP------KESTI 426
Query: 249 EICGHYLSRASRLRAHLKAH-SVVASNNKVQNCKKCFKCCQVFPSNEEN-----LRKHFE 302
I YL +L H S+V N K F + P + + H +
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNI----PKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 303 KVHFDLEFDEAHFYDVVLKCVYRFRIVQYFLCELCDKTSIHYTYLCLHKKLKHSNLTYGG 362
+ F V L +RF L +K++H + +
Sbjct: 483 NIEHPERMTL--FRMVFLD--FRF----------------------LEQKIRHDSTAWNA 516
Query: 363 ESPVCEPCNLTFKNEWQYLVHNRAVHELPPEPNSGAGSVLQNNPYPPLRKAKQH-VKSVT 421
+ K Y+ N P+ ++L L K +++ + S
Sbjct: 517 SGSIL-NTLQQLKFYKPYICDND------PKYERLVNAILDF-----LPKIEENLICSKY 564
Query: 422 CSVCEKAFSSKEN 434
+ A +++
Sbjct: 565 TDLLRIALMAEDE 577
Score = 29.4 bits (65), Expect = 4.0
Identities = 36/201 (17%), Positives = 56/201 (27%), Gaps = 61/201 (30%)
Query: 423 SVCEKAFSSKENCK--AHYTRQHGNKEP-----KEPKSGEGLPALEQLLKMKPYTCEICS 475
SV E AF +CK + +KE + G L L K
Sbjct: 23 SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ------E 76
Query: 476 KTYT--VEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN--FSCDECSVEC 530
+ VE L +Y + R + R+ DN F+
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQVFA-------- 127
Query: 531 QDLNALRMHTLREHGYKILACEKCDVKFTHKALLAEHINTKHNTDVTL-------KCQLC 583
+ + R Y L +ALL + +V + K +
Sbjct: 128 ------KYNVSRLQPYLKL----------RQALL----ELRPAKNVLIDGVLGSGKTWVA 167
Query: 584 NVVVLIEEV-------IFWIS 597
V L +V IFW++
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLN 188
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 56.3 bits (136), Expect = 2e-10
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
Query: 218 YECEICKKKFINKSTLKEHSVSH---MSVKPFKCEICGHYLSRASRLRAHLKAHSVVASN 274
+CEIC K++L H H ++ F CE CG + + AH
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 275 NKVQNCKKCF 284
++
Sbjct: 68 APQESSGPSS 77
Score = 53.9 bits (130), Expect = 1e-09
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF----YQCDVCFKEFRSSVTLRNHTRRH 518
CEIC T + SL H H+ + C+ C K F ++ H +
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 51.3 bits (123), Expect = 1e-08
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 189 LKCTICNKENFKNQLSLSIHMRYH---ENVREYECEICKKKFINKSTLKEH-SVSHMSVK 244
L+C IC + + SL+ H R H + CE C K+F ++ H S SH ++
Sbjct: 8 LQCEICGF-TCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 245 PFKCEICG 252
E G
Sbjct: 67 LAPQESSG 74
Score = 47.0 bits (112), Expect = 4e-07
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 491 HSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN------FSCDECSVECQDLNALRMHTLRE 543
SG QC++C R +L H R+H F C+ C + +++ H +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 544 HGYKILACEKC 554
H +LA ++
Sbjct: 62 HPALLLAPQES 72
Score = 43.2 bits (102), Expect = 8e-06
Identities = 12/74 (16%), Positives = 18/74 (24%), Gaps = 18/74 (24%)
Query: 421 TCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTV 480
C +C K + H R+H + CE C K +
Sbjct: 9 QCEICGFTCRQKASLNWH-QRKHAETV------AA-----------LRFPCEFCGKRFEK 50
Query: 481 EGSLLTHYDMHSGE 494
S+ H
Sbjct: 51 PDSVAAHRSKSHPA 64
Score = 37.8 bits (88), Expect = 6e-04
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 244 KPFKCEICGHYLSRASRLRAHLKAHSVVASNNKVQNCKKCFKCCQVFPSNEENLRKHFEK 303
+CEICG + + L H + H+ + C+ C K +++ H K
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVA-ALRFPCEFCGKRF----EKPDSVAAHRSK 60
Query: 304 VH 305
H
Sbjct: 61 SH 62
Score = 36.6 bits (85), Expect = 0.002
Identities = 14/72 (19%), Positives = 20/72 (27%), Gaps = 7/72 (9%)
Query: 158 HECRECGSQFADILKHSLETHLSFIHVQDNQLK---CTICNKENFKNQLSLSIHMRYHEN 214
+C CG K SL H H + C C K F+ S++ H
Sbjct: 8 LQCEICGFTCRQ--KASLNWHQR-KHAETVAALRFPCEFCGK-RFEKPDSVAAHRSKSHP 63
Query: 215 VREYECEICKKK 226
+
Sbjct: 64 ALLLAPQESSGP 75
Score = 30.8 bits (70), Expect = 0.18
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 421 TCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKS 453
C C K F ++ AH ++ H +S
Sbjct: 40 PCEFCGKRFEKPDSVAAHRSKSHPALLLAPQES 72
Score = 27.8 bits (62), Expect = 2.0
Identities = 17/72 (23%), Positives = 23/72 (31%), Gaps = 5/72 (6%)
Query: 332 FLCELCDKTSIHYTYLCLHKKLKHSNLTYGGESP-VCEPCNLTFKNEWQYLVHNRAVH-E 389
CE+C T L H++ KH+ CE C F+ H H
Sbjct: 8 LQCEICGFTCRQKASLNWHQR-KHAETV--AALRFPCEFCGKRFEKPDSVAAHRSKSHPA 64
Query: 390 LPPEPNSGAGSV 401
L P +G
Sbjct: 65 LLLAPQESSGPS 76
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 55.6 bits (135), Expect = 2e-10
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 210 RYHENVREYECEICKKKFINKSTLKEH--SVSHMSVKPFKCEICGHYLSRASRLRAHLKA 267
E Y C++C + + + S H + +VK + C C +R + AH+K
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 268 H 268
Sbjct: 63 I 63
Score = 49.1 bits (118), Expect = 4e-08
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 467 KPYTCEICSKTYTVEGSLLTHY--DMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
Y C++CS+ YT + HY Y C CFKEF + H +
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 42.5 bits (101), Expect = 1e-05
Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 19/73 (26%)
Query: 421 TCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTV 480
C VC + ++ N HY H K Y C C K +T
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNV-------------------KVYPCPFCFKEFTR 52
Query: 481 EGSLLTHYDMHSG 493
+ ++ H +
Sbjct: 53 KDNMTAHVKIIHK 65
Score = 32.9 bits (76), Expect = 0.023
Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 34/81 (41%)
Query: 158 HECRECGSQFADILKHSLETHLSFIHVQDNQLKCTICNKENFKNQLSLSIHMR--YHENV 215
+ C+ C + TH+S + H + NV
Sbjct: 11 YRCKVCSRVY---------THIS-----------------------NFCRHYVTSHKRNV 38
Query: 216 REYECEICKKKFINKSTLKEH 236
+ Y C C K+F K + H
Sbjct: 39 KVYPCPFCFKEFTRKDNMTAH 59
Score = 32.9 bits (76), Expect = 0.024
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 244 KPFKCEICGHYLSRASRLRAHLKAHSVVASNNKVQNCKKCFKCCQVFPSNEENLRKHFEK 303
++C++C + S H + N KV C CFK F + ++N+ H K
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYV--TSHKRNVKVYPCPFCFKE---F-TRKDNMTAH-VK 61
Query: 304 VH 305
+
Sbjct: 62 II 63
Score = 32.5 bits (75), Expect = 0.031
Identities = 15/83 (18%), Positives = 22/83 (26%), Gaps = 24/83 (28%)
Query: 491 HSGEF-YQCDVCFKEFRSSVTLRNHTRRHDNFSCDECSVECQDLNALRMHTLREHGYKIL 549
GE Y+C VC + + H K+
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSH-------------------KR----NVKVY 41
Query: 550 ACEKCDVKFTHKALLAEHINTKH 572
C C +FT K + H+ H
Sbjct: 42 PCPFCFKEFTRKDNMTAHVKIIH 64
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 55.2 bits (134), Expect = 4e-10
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 204 SLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRA 263
H + + Y+C+ C+ F K L H H KP++C ICG +R + L+
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 264 HLKAH 268
H + H
Sbjct: 64 HTRIH 68
Score = 50.5 bits (122), Expect = 2e-08
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE-FYQCDVCFKEFRSSVTLRNHTRRH 518
KPY C+ C ++ +G+L +H +H+GE Y+C++C +F L+ HTR H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 40.9 bits (97), Expect = 4e-05
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 21/73 (28%)
Query: 422 CSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTVE 481
C C+ +F K N +H H +GE KPY C IC +
Sbjct: 20 CDRCQASFRYKGNLASHK-TVH---------TGE-----------KPYRCNICGAQFNRP 58
Query: 482 GSLLTHYDMHSGE 494
+L TH +HSGE
Sbjct: 59 ANLKTHTRIHSGE 71
Score = 40.5 bits (96), Expect = 7e-05
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 190 KCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPF 246
KC C F+ + +L+ H H + Y C IC +F + LK H+ H KP+
Sbjct: 19 KCDRCQAS-FRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 32.8 bits (76), Expect = 0.032
Identities = 11/38 (28%), Positives = 14/38 (36%)
Query: 231 STLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
HS S KP+KC+ C L +H H
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVH 40
Score = 32.0 bits (74), Expect = 0.053
Identities = 20/86 (23%), Positives = 25/86 (29%), Gaps = 26/86 (30%)
Query: 483 SLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDNFSCDECSVECQDLNALRMHTL 541
H M + Y+CD C FR L +H +HT
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKT---------------------VHT- 41
Query: 542 REHGYKILACEKCDVKFTHKALLAEH 567
G K C C +F A L H
Sbjct: 42 ---GEKPYRCNICGAQFNRPANLKTH 64
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 54.8 bits (133), Expect = 8e-10
Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 21/102 (20%)
Query: 417 VKSVTCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSK 476
+K C +C + FS ++ H R H +GE KP+ C+IC +
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHI-RTH---------TGE-----------KPFACDICGR 39
Query: 477 TYTVEGSLLTHYDMHSGEFYQCDVCFKEFRSSVTLRNHTRRH 518
+ H D+ D + + L N R
Sbjct: 40 KFARSDERKRHRDIQHILPILEDKVEELLSKNYHLENEVARL 81
Score = 52.9 bits (128), Expect = 4e-09
Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 27/104 (25%)
Query: 466 MKPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDNFSCD 524
MKP+ C IC + ++ L TH H+GE + CD+C ++F S + H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH---------- 50
Query: 525 ECSVECQDLNALRMHTLREHGYKILACEKCDVKFTHKALLAEHI 568
+ +K + + L +
Sbjct: 51 -----------RDIQH--ILPIL---EDKVEELLSKNYHLENEV 78
Score = 50.6 bits (122), Expect = 2e-08
Identities = 19/108 (17%), Positives = 30/108 (27%), Gaps = 35/108 (32%)
Query: 158 HECRECGSQFADILKHSLETHLSFIHVQDNQLKCTICNKENFKNQLS-LSIHMRYHENVR 216
+CR C F ++ L+ H+R H +
Sbjct: 4 FQCRICMRNF---------------------------------SRSDHLTTHIRTHTGEK 30
Query: 217 EYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAH 264
+ C+IC +KF K H P + LS+ L
Sbjct: 31 PFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENE 77
Score = 48.3 bits (116), Expect = 2e-07
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 215 VREYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
++ ++C IC + F L H +H KPF C+ICG +R+ + H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54
Score = 26.3 bits (59), Expect = 9.8
Identities = 18/75 (24%), Positives = 24/75 (32%), Gaps = 25/75 (33%)
Query: 496 YQCDVCFKEFRSSVTLRNHTRRHDNFSCDECSVECQDLNALRMHTLREHGYKILACEKCD 555
+QC +C + F S L H +R HT G K AC+ C
Sbjct: 4 FQCRICMRNFSRSDHLTTH---------------------IRTHT----GEKPFACDICG 38
Query: 556 VKFTHKALLAEHINT 570
KF H +
Sbjct: 39 RKFARSDERKRHRDI 53
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 54.9 bits (133), Expect = 8e-10
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 194 CNKENFKNQLSLSIHMRYHENVREYEC--EICKKKFINKSTLKEHSVSHMSVKPFKCEIC 251
C K K+ L H+R H + Y+C E C +F L H H KPF+C +C
Sbjct: 23 CTKVYTKSS-HLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVC 81
Query: 252 GHYLSRASRLRAHLKAH 268
SR+ L H+K H
Sbjct: 82 NRSFSRSDHLALHMKRH 98
Score = 53.0 bits (128), Expect = 4e-09
Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 26/112 (23%)
Query: 414 KQHVKSVTCSV--CEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTC 471
+ + C C K ++ + KAH R H +GE KPY C
Sbjct: 10 LEKRRIHYCDYPGCTKVYTKSSHLKAHL-RTH---------TGE-----------KPYKC 48
Query: 472 --EICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN 520
E C + L HY H+G +QC VC + F S L H +RH N
Sbjct: 49 TWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 44.5 bits (106), Expect = 4e-06
Identities = 28/111 (25%), Positives = 39/111 (35%), Gaps = 30/111 (27%)
Query: 465 KMKPYTCEI--CSKTYTVEGSLLTHYDMHSGEF-YQC--DVCFKEFRSSVTLRNHTRRHD 519
K + + C+ C+K YT L H H+GE Y+C + C F S L H R+H
Sbjct: 12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHT 71
Query: 520 NFSCDECSVECQDLNALRMHTLREHGYKILACEKCDVKFTHKALLAEHINT 570
G K C C+ F+ LA H+
Sbjct: 72 -------------------------GAKPFQCGVCNRSFSRSDHLALHMKR 97
Score = 36.1 bits (84), Expect = 0.004
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Query: 157 MHECR--ECGSQFADILKHSLETHLSFIHVQDNQLKCTI--CNKENFKNQLSLSIHMRYH 212
+H C C + L+ HL H + KCT C+ F L+ H R H
Sbjct: 15 IHYCDYPGCTKVYTK--SSHLKAHLR-THTGEKPYKCTWEGCDW-RFARSDELTRHYRKH 70
Query: 213 ENVREYECEICKKKFINKSTLKEHSVSHMS 242
+ ++C +C + F L H H +
Sbjct: 71 TGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 54.0 bits (131), Expect = 2e-09
Identities = 25/103 (24%), Positives = 34/103 (33%), Gaps = 24/103 (23%)
Query: 418 KSVTCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKT 477
V C +C K F + H H SGE KPY+C +C
Sbjct: 6 SGVACEICGKIFRDVYHLNRH-KLSH---------SGE-----------KPYSCPVCGLR 44
Query: 478 YTVEGSLLTHYDMHSGEF---YQCDVCFKEFRSSVTLRNHTRR 517
+ + + H H G Y C C K F L H ++
Sbjct: 45 FKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQ 87
Score = 52.5 bits (127), Expect = 5e-09
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 218 YECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHSVVASNNKV 277
CEIC K F + L H +SH KP+ C +CG R R+ H+++H S K
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHD--GSVGKP 65
Query: 278 QNCKKCFKCCQVFPSNEENLRKHFEKVH 305
C+ C K F S ++L H ++VH
Sbjct: 66 YICQSCGKG---F-SRPDHLNGHIKQVH 89
Score = 52.5 bits (127), Expect = 6e-09
Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN----- 520
CEIC K + L H HSGE Y C VC F+ + H R HD
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP 65
Query: 521 FSCDEC 526
+ C C
Sbjct: 66 YICQSC 71
Score = 45.9 bits (110), Expect = 1e-06
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 6/81 (7%)
Query: 158 HECRECGSQFADILKHSLETHLSFIHVQDNQLKCTICNKENFKNQLSLSIHMRYH--ENV 215
C CG F D + L H H + C +C FK + +S H+R H
Sbjct: 8 VACEICGKIFRD--VYHLNRHKL-SHSGEKPYSCPVCGL-RFKRKDRMSYHVRSHDGSVG 63
Query: 216 REYECEICKKKFINKSTLKEH 236
+ Y C+ C K F L H
Sbjct: 64 KPYICQSCGKGFSRPDHLNGH 84
Score = 35.5 bits (83), Expect = 0.005
Identities = 20/75 (26%), Positives = 25/75 (33%), Gaps = 20/75 (26%)
Query: 421 TCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTV 480
+C VC F K+ H R H G KPY C+ C K ++
Sbjct: 37 SCPVCGLRFKRKDRMSYH-VRSH---------DGS---------VGKPYICQSCGKGFSR 77
Query: 481 EGSLLTHYDM-HSGE 494
L H HSG
Sbjct: 78 PDHLNGHIKQVHSGP 92
Score = 29.4 bits (67), Expect = 0.73
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 244 KPFKCEICGHYLSRASRLRAHLKAHS 269
CEICG L H +HS
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHS 31
Score = 27.1 bits (61), Expect = 5.9
Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 26/78 (33%)
Query: 491 HSGE-FYQCDVCFKEFRSSVTLRNHTRRHDNFSCDECSVECQDLNALRMHTLREHGYKIL 549
SG C++C K FR L H H+ G K
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRH---------------------KLSHS----GEKPY 36
Query: 550 ACEKCDVKFTHKALLAEH 567
+C C ++F K ++ H
Sbjct: 37 SCPVCGLRFKRKDRMSYH 54
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 53.3 bits (129), Expect = 3e-09
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 190 KCTICNKENFKNQLSLSIHMRYHENVREYEC--EICKKKFINKSTLKEHSVSHMSVKPFK 247
C K K+ L H+R H + Y C + C KF L H H +PF+
Sbjct: 9 DYAGCGKTYTKSS-HLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 248 CEICGHYLSRASRLRAHLKAH 268
C+ C SR+ L H+K H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 47.5 bits (114), Expect = 3e-07
Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 24/101 (23%)
Query: 421 TCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTC--EICSKTY 478
+ C K ++ + KAH R H +GE KPY C + C +
Sbjct: 9 DYAGCGKTYTKSSHLKAHL-RTH---------TGE-----------KPYHCDWDGCGWKF 47
Query: 479 TVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
L HY H+G +QC C + F S L H +RH
Sbjct: 48 ARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 47.5 bits (114), Expect = 3e-07
Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 465 KMKPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDV--CFKEFRSSVTLRNHTRRHDN- 520
C KTYT L H H+GE Y CD C +F S L H R+H
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 521 --FSCDEC 526
F C +C
Sbjct: 64 RPFQCQKC 71
Score = 41.0 bits (97), Expect = 6e-05
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 11/97 (11%)
Query: 212 HENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC--EICGHYLSRASRLRAHLKAHS 269
+ C K + S LK H +H KP+ C + CG +R+ L H + H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH- 60
Query: 270 VVASNNKVQNCKKCFKCCQVFPSNEENLRKHFEKVHF 306
+ ++ C+KC + F S ++L H K HF
Sbjct: 61 ---TGHRPFQCQKCDRA---F-SRSDHLALH-MKRHF 89
Score = 36.4 bits (85), Expect = 0.002
Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 8/89 (8%)
Query: 156 FMHECRECGSQFADILKHS-LETHLSFIHVQDNQLKCTI--CNKENFKNQLSLSIHMRYH 212
+ CG + K S L+ HL H + C C F L+ H R H
Sbjct: 6 HTCDYAGCGKTYT---KSSHLKAHLR-THTGEKPYHCDWDGCGW-KFARSDELTRHYRKH 60
Query: 213 ENVREYECEICKKKFINKSTLKEHSVSHM 241
R ++C+ C + F L H H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRHF 89
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 54.1 bits (131), Expect = 3e-09
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 190 KCT--ICNKENFKNQLSLSIHMRYHENVREYECEI--CKKKFINKSTLKEHSVSHMSVKP 245
C CNK + L +H R H + Y+C+ C+++F LK H H VKP
Sbjct: 8 MCAYPGCNKR-YFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 246 FKCEICGHYLSRASRLRAHLKAH 268
F+C+ C SR+ L+ H + H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTH 89
Score = 52.9 bits (128), Expect = 8e-09
Identities = 39/115 (33%), Positives = 49/115 (42%), Gaps = 12/115 (10%)
Query: 467 KPYTCE--ICSKTYTVEGSLLTHYDMHSGEF-YQCDV--CFKEFRSSVTLRNHTRRHDN- 520
+P+ C C+K Y L H H+GE YQCD C + F S L+ H RRH
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 521 --FSCDECSVECQDLNALRMHTLREH-GYKILACEK--CDVKFTHKALLAEHINT 570
F C C + + L+ HT R H G K +C C KF L H N
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHT-RTHTGEKPFSCRWPSCQKKFARSDELVRHHNM 118
Score = 51.8 bits (125), Expect = 2e-08
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 24/97 (24%)
Query: 425 CEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEI--CSKTYTVEG 482
C K + + + H +R+H +GE KPY C+ C + ++
Sbjct: 14 CNKRYFKLSHLQMH-SRKH---------TGE-----------KPYQCDFKDCERRFSRSD 52
Query: 483 SLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
L H H+G +QC C ++F S L+ HTR H
Sbjct: 53 QLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTH 89
Score = 49.4 bits (119), Expect = 1e-07
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 24/97 (24%)
Query: 425 CEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTVEGSL 484
CE+ FS + K H R+H +G KP+ C+ C + ++ L
Sbjct: 44 CERRFSRSDQLKRHQ-RRH---------TGV-----------KPFQCKTCQRKFSRSDHL 82
Query: 485 LTHYDMHSGEF-YQCDV--CFKEFRSSVTLRNHTRRH 518
TH H+GE + C C K+F S L H H
Sbjct: 83 KTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 29.8 bits (68), Expect = 0.95
Identities = 14/82 (17%), Positives = 22/82 (26%), Gaps = 36/82 (43%)
Query: 158 HECRECGSQFADILKHSLETHLSFIHVQDNQLKCTICNKENFKNQLS-LSIHMRYHENVR 216
+C+ C +F ++ L H R H +
Sbjct: 67 FQCKTCQRKF---------------------------------SRSDHLKTHTRTHTGEK 93
Query: 217 EYECEI--CKKKFINKSTLKEH 236
+ C C+KKF L H
Sbjct: 94 PFSCRWPSCQKKFARSDELVRH 115
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 56.1 bits (136), Expect = 3e-09
Identities = 41/157 (26%), Positives = 55/157 (35%), Gaps = 22/157 (14%)
Query: 159 ECRE--CGSQFADILKHSLETHLSFIHVQDNQLKCT--ICNKENFKNQLSLSIHMRYH-- 212
C+E C F H L H H + C C+ F + ++ H
Sbjct: 44 PCKEEGCEKGFTS--LHHLTRHSL-THTGEKNFTCDSDGCDLR-FTTKANMKKHFNRFHN 99
Query: 213 ENVREYECEI--CKKKFINKSTLKEHSVSHMSVKPFKC--EICGHYLSRASRLRAHLKAH 268
+ Y C C K F + LK H SH P++C E C S SRL+ H K H
Sbjct: 100 IKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
Query: 269 SVVASNNKVQNCKKCFKCCQVFPSNEENLRKHFEKVH 305
+ CKK C V + KH + H
Sbjct: 160 AG-------YPCKKDDSCSFVGKTW-TLYLKHVAECH 188
Score = 48.0 bits (115), Expect = 2e-06
Identities = 44/219 (20%), Positives = 72/219 (32%), Gaps = 62/219 (28%)
Query: 190 KCTI--CNKENFKNQLSLSIHMRYHENVREYECE--ICKKKFINKSTLKEHSVSHMSVKP 245
C+ C + L H+ H + + C+ C+K F + L HS++H K
Sbjct: 14 ICSFADCGA-AYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 72
Query: 246 FKCE--ICGHYLSRASRLRAHLKAHSVVASNNKVQ-------NCKKCFKCCQVFPSNEEN 296
F C+ C + + ++ H N K+ NC K FK
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFH----NIKICVYVCHFENCGKAFKKHN-------Q 121
Query: 297 LRKHFEKVH-----FDLEFDEAHFYDVVLKCVYRFRIVQYFLCELCDKTSIHYTYLCLHK 351
L+ H + H + +C + E CDK + L H+
Sbjct: 122 LKVH-QFSHTQQLPY--------------ECPH----------EGCDKRFSLPSRLKRHE 156
Query: 352 KLKHSNLTYGGESP-VCEPCNLTFKNEWQYLVHNRAVHE 389
K+ H+ G + C+ K YL H H+
Sbjct: 157 KV-HA-----GYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 47.2 bits (113), Expect = 2e-06
Identities = 29/128 (22%), Positives = 41/128 (32%), Gaps = 27/128 (21%)
Query: 425 CEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEI--CSKTYTVEG 482
C+ F++K N K H+ R H K Y C C K +
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKI-------------------CVYVCHFENCGKAFKKHN 120
Query: 483 SLLTHYDMHSGE-FYQC--DVCFKEFRSSVTLRNHTRRH---DNFSCDECSVECQDLNAL 536
L H H+ + Y+C + C K F L+ H + H D CS +
Sbjct: 121 QLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLY 180
Query: 537 RMHTLREH 544
H H
Sbjct: 181 LKHVAECH 188
Score = 46.0 bits (110), Expect = 8e-06
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 26/99 (26%)
Query: 425 CEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCE--ICSKTYTVEG 482
C A++ +AH +H +GE KP+ C+ C K +T
Sbjct: 20 CGAAYNKNWKLQAHL-CKH---------TGE-----------KPFPCKEEGCEKGFTSLH 58
Query: 483 SLLTHYDMHSGE-FYQCD--VCFKEFRSSVTLRNHTRRH 518
L H H+GE + CD C F + ++ H R
Sbjct: 59 HLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRF 97
Score = 45.7 bits (109), Expect = 1e-05
Identities = 33/165 (20%), Positives = 53/165 (32%), Gaps = 41/165 (24%)
Query: 425 CEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCE--ICSKTYTVEG 482
CEK F+S + H H +GE K +TC+ C +T +
Sbjct: 50 CEKGFTSLHHLTRHS-LTH---------TGE-----------KNFTCDSDGCDLRFTTKA 88
Query: 483 SLLTHYDMHSGE---FYQCDV--CFKEFRSSVTLRNHTRRH--------DNFSCDECSVE 529
++ H++ Y C C K F+ L+ H H + CD+
Sbjct: 89 NMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSL 148
Query: 530 CQDLNA-LRMHTLREHGYKILACEKCDVKFTHKALLAEHINTKHN 573
L ++H GY + C L +H+ H
Sbjct: 149 PSRLKRHEKVHA----GYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 44.5 bits (106), Expect = 2e-05
Identities = 28/117 (23%), Positives = 40/117 (34%), Gaps = 12/117 (10%)
Query: 158 HECRE--CGSQFADILKHSLETHLSFIH--VQDNQLKCTI--CNKENFKNQLSLSIHMRY 211
C C +F K +++ H + ++ C C K FK L +H
Sbjct: 73 FTCDSDGCDLRFTT--KANMKKHFN-RFHNIKICVYVCHFENCGK-AFKKHNQLKVHQFS 128
Query: 212 HENVREYEC--EICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLK 266
H YEC E C K+F S LK H H K + C + H+
Sbjct: 129 HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVA 185
Score = 41.4 bits (98), Expect = 2e-04
Identities = 14/65 (21%), Positives = 19/65 (29%), Gaps = 4/65 (6%)
Query: 208 HMRYHENVREYECEI--CKKKFINKSTLKEHSVSHMSVKPFKCE--ICGHYLSRASRLRA 263
+ Y C C + L+ H H KPF C+ C + L
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 264 HLKAH 268
H H
Sbjct: 63 HSLTH 67
Score = 41.0 bits (97), Expect = 3e-04
Identities = 33/115 (28%), Positives = 40/115 (34%), Gaps = 14/115 (12%)
Query: 467 KPYTCEI--CSKTYTVEGSLLTHYDMHSGE-FYQCD--VCFKEFRSSVTLRNHTRRH--- 518
K Y C C Y L H H+GE + C C K F S L H+ H
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Query: 519 DNFSCDE--CSVECQDLNALRMHTLREHGYKIL----ACEKCDVKFTHKALLAEH 567
NF+CD C + ++ H R H KI E C F L H
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH 125
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 53.2 bits (129), Expect = 5e-09
Identities = 18/66 (27%), Positives = 27/66 (40%)
Query: 204 SLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRA 263
S + +E+ C+ C + F L H +H +P+ C+IC R LR
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63
Query: 264 HLKAHS 269
H HS
Sbjct: 64 HRYIHS 69
Score = 52.4 bits (127), Expect = 9e-09
Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 22/98 (22%)
Query: 422 CSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTVE 481
C C + F+ N H R H + E +PYTC+IC K + +
Sbjct: 20 CKFCGRHFTKSYNLLIH-ERTH---------TDE-----------RPYTCDICHKAFRRQ 58
Query: 482 GSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
L H +HS E ++C C K F S TL H H
Sbjct: 59 DHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 50.5 bits (122), Expect = 4e-08
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE-FYQCDVCFKEFRSSVTLRNHTRRHDN---FS 522
K + C+ C + +T +LL H H+ E Y CD+C K FR LR+H H F
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 523 CDEC 526
C EC
Sbjct: 76 CQEC 79
Score = 50.1 bits (121), Expect = 5e-08
Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
Query: 158 HECRECGSQFADILKHSLETHLSFIHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVRE 217
C+ CG F ++L H H + C IC+K F+ Q L H H +
Sbjct: 18 FICKFCGRHFTK--SYNLLIHER-THTDERPYTCDICHK-AFRRQDHLRDHRYIHSKEKP 73
Query: 218 YECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
++C+ C K F TL H HM
Sbjct: 74 FKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 37.0 bits (87), Expect = 0.002
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 22/79 (27%)
Query: 421 TCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTV 480
TC +C KAF +++ + H H S E KP+ C+ C K +
Sbjct: 47 TCDICHKAFRRQDHLRDHR-YIH---------SKE-----------KPFKCQECGKGFCQ 85
Query: 481 EGSLLTHYDMHSGE-FYQC 498
+L H +H
Sbjct: 86 SRTLAVHKTLHMQTSSPTA 104
Score = 32.4 bits (75), Expect = 0.094
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 230 KSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S + + K F C+ CG + +++ L H + H
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTH 40
Score = 30.1 bits (69), Expect = 0.59
Identities = 16/86 (18%), Positives = 22/86 (25%), Gaps = 26/86 (30%)
Query: 483 SLLTHYDMHSGE-FYQCDVCFKEFRSSVTLRNHTRRHDNFSCDECSVECQDLNALRMHTL 541
+ + C C + F S L H R HT
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHER---------------------THT- 41
Query: 542 REHGYKILACEKCDVKFTHKALLAEH 567
E Y C+ C F + L +H
Sbjct: 42 DERPYT---CDICHKAFRRQDHLRDH 64
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 52.1 bits (126), Expect = 6e-09
Identities = 22/65 (33%), Positives = 28/65 (43%)
Query: 205 LSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAH 264
S H + Y C C K F S L +H H KP+KC CG S+ S L H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 265 LKAHS 269
+ H+
Sbjct: 62 QRIHT 66
Score = 45.9 bits (110), Expect = 7e-07
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
KPY C C K ++ L+ H +H+GE Y+C C K F + L NH R H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 38.2 bits (90), Expect = 4e-04
Identities = 18/57 (31%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 190 KCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPF 246
C C K F L H R H + Y+C C K F S L H H S
Sbjct: 16 GCVECGKA-FSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 35.5 bits (83), Expect = 0.004
Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 21/73 (28%)
Query: 422 CSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTVE 481
C C KAFS H R H +GE KPY C C K ++
Sbjct: 17 CVECGKAFSRSSILVQH-QRVH---------TGE-----------KPYKCLECGKAFSQN 55
Query: 482 GSLLTHYDMHSGE 494
L+ H +H+
Sbjct: 56 SGLINHQRIHTSG 68
Score = 29.0 bits (66), Expect = 0.79
Identities = 23/85 (27%), Positives = 28/85 (32%), Gaps = 26/85 (30%)
Query: 484 LLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDNFSCDECSVECQDLNALRMHTLR 542
+HSGE Y C C K F S L H R +HT
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQR---------------------VHT-G 39
Query: 543 EHGYKILACEKCDVKFTHKALLAEH 567
E YK C +C F+ + L H
Sbjct: 40 EKPYK---CLECGKAFSQNSGLINH 61
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 52.1 bits (126), Expect = 1e-08
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 159 ECRECGSQFADILKHSLETHLSFIHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVREY 218
C +CG F K + H+S +H+ C +C K FK + L HM+ H ++ Y
Sbjct: 12 PC-QCGKSFTH--KSQRDRHMS-MHLGLRPYGCGVCGK-KFKMKHHLVGHMKIHTGIKPY 66
Query: 219 ECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRA 263
EC IC K+F+ + + H K ++ + AS +
Sbjct: 67 ECNICAKRFMWRDSFHRHV--TSCTKSYEAAKAEQNTTEASGPSS 109
Score = 49.7 bits (120), Expect = 8e-08
Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 13/106 (12%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN---FS 522
K Y C+ C K++T + H MH G Y C VC K+F+ L H + H +
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYE 67
Query: 523 CDECS---VECQDLNALRMHTLREHGYKILACEKCDVKFTHKALLA 565
C+ C+ + + + + K K + T + +
Sbjct: 68 CNICAKRFMWRDSFH-RHVTS----CTKSYEAAKAEQNTTEASGPS 108
Score = 47.8 bits (115), Expect = 4e-07
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 199 FKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRA 258
F ++ HM H +R Y C +C KKF K L H H +KP++C IC
Sbjct: 19 FTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWR 78
Query: 259 SRL--RAH 264
Sbjct: 79 DSFHRHVT 86
Score = 45.1 bits (108), Expect = 4e-06
Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 24/93 (25%)
Query: 422 CSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTVE 481
C VC K F K + H + H +G KPY C IC+K +
Sbjct: 40 CGVCGKKFKMKHHLVGHM-KIH---------TGI-----------KPYECNICAKRFMWR 78
Query: 482 GSLLTHYDMHSGE-FYQCDVCFKEFRSSVTLRN 513
S H + S Y+ + + +
Sbjct: 79 DSF--HRHVTSCTKSYEAAKAEQNTTEASGPSS 109
Score = 44.7 bits (107), Expect = 4e-06
Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 27/106 (25%)
Query: 425 CEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTVEGSL 484
C K+F+ K H H G +PY C +C K + ++ L
Sbjct: 15 CGKSFTHKSQRDRHM-SMH---------LGL-----------RPYGCGVCGKKFKMKHHL 53
Query: 485 LTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDN---FSCDEC 526
+ H +H+G Y+C++C K F + H + +
Sbjct: 54 VGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKA 97
Score = 44.7 bits (107), Expect = 5e-06
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 218 YECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
Y C+ C K F +KS H H+ ++P+ C +CG L H+K H+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
Score = 36.7 bits (86), Expect = 0.003
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 6/76 (7%)
Query: 158 HECRECGSQFADILKHSLETHLSFIHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVRE 217
+ C CG +F KH L H+ IH +C IC K F + S H +
Sbjct: 38 YGCGVCGKKFKM--KHHLVGHMK-IHTGIKPYECNICAK-RFMWRDSF--HRHVTSCTKS 91
Query: 218 YECEICKKKFINKSTL 233
YE ++ S
Sbjct: 92 YEAAKAEQNTTEASGP 107
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 50.5 bits (122), Expect = 2e-08
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 204 SLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRA 263
S R Y+C+ C K F + S L +H +H KP+KC+ CG + S L
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 264 HLKAH 268
H + H
Sbjct: 65 HHRVH 69
Score = 46.3 bits (111), Expect = 7e-07
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ Y C+ C K+++ L H H+GE Y+CD C K F L H R H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 40.1 bits (95), Expect = 9e-05
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 190 KCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFK 247
KC C K +F + LS H R H + Y+C+ C K FI +S L H H P
Sbjct: 20 KCDECGK-SFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 35.1 bits (82), Expect = 0.005
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 21/73 (28%)
Query: 422 CSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTVE 481
C C K+FS + H R H +GE KPY C+ C K +
Sbjct: 21 CDECGKSFSHSSDLSKHR-RTH---------TGE-----------KPYKCDECGKAFIQR 59
Query: 482 GSLLTHYDMHSGE 494
L+ H+ +H+G
Sbjct: 60 SHLIGHHRVHTGS 72
Score = 32.0 bits (74), Expect = 0.064
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 230 KSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
+ + +KC+ CG S +S L H + H
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 41
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 49.8 bits (120), Expect = 4e-08
Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 4/69 (5%)
Query: 204 SLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSH----MSVKPFKCEICGHYLSRAS 259
S R H + Y C C K F K L H + F C CG +R +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 260 RLRAHLKAH 268
+ H
Sbjct: 62 TMARHADNC 70
Score = 49.8 bits (120), Expect = 4e-08
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 8/68 (11%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-----YQCDVCFKEFRSSVTLRNHTRRH--- 518
KPY C C KT+ + L H+ + + C C K F T+ H
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGP 73
Query: 519 DNFSCDEC 526
D +
Sbjct: 74 DGVEGENS 81
Score = 47.5 bits (114), Expect = 3e-07
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 190 KCTICNKENFKNQLSLSIHMRYH--ENVRE--YECEICKKKFINKSTLKEHSVSHMSVKP 245
C+ C+K F+ + L +H + + N + C C K F ++T+ H+ +
Sbjct: 17 ACSHCDK-TFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG 75
Query: 246 FKCEICG 252
+ E G
Sbjct: 76 VEGENSG 82
Score = 46.8 bits (112), Expect = 6e-07
Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 18/86 (20%)
Query: 421 TCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTV 480
CS C+K F K+ H+ R H + C C KT+T
Sbjct: 17 ACSHCDKTFRQKQLLDMHFKRYHDPNFVP-----------------AAFVCSKCGKTFTR 59
Query: 481 EGSLLTHYDMHSGEF-YQCDVCFKEF 505
++ H D +G + +
Sbjct: 60 RNTMARHADNCAGPDGVEGENSGPSS 85
Score = 36.3 bits (85), Expect = 0.003
Identities = 21/87 (24%), Positives = 27/87 (31%), Gaps = 22/87 (25%)
Query: 482 GSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRHDNFSCDECSVECQDLNALRMHT 540
GS + H+GE Y C C K FR L H +R+
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRY---------------------H 39
Query: 541 LREHGYKILACEKCDVKFTHKALLAEH 567
C KC FT + +A H
Sbjct: 40 DPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 32.9 bits (76), Expect = 0.045
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 4/69 (5%)
Query: 232 TLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHSVVASNNKVQNCKKCFKCCQVFP 291
+ +H KP+ C C + L H K + C KC K F
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKT---F- 57
Query: 292 SNEENLRKH 300
+ + +H
Sbjct: 58 TRRNTMARH 66
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.1 bits (132), Expect = 6e-08
Identities = 57/364 (15%), Positives = 103/364 (28%), Gaps = 132/364 (36%)
Query: 127 EECDINFPSKMRHTFHLQHHLEDPD--------------LP-------VNFMHECRECG- 164
+ + F ++ LE+P P +++ + G
Sbjct: 203 LDAEKVFT----QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF 258
Query: 165 --SQFADILKHSLETHLS------FIHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVR 216
+ LK H I D+ E+F + +I + + VR
Sbjct: 259 TPGELRSYLK-GATGHSQGLVTAVAIAETDS--------WESFFVSVRKAITVLFFIGVR 309
Query: 217 EYECEICKKKF----INKSTLKEHSV-------SHM-SVK-PFKCEICGHYLSRASRLRA 263
C + + + S L++ S+ S M S+ + ++ ++ +
Sbjct: 310 ------CYEAYPNTSLPPSILED-SLENNEGVPSPMLSISNLTQEQV----QDYVNKTNS 358
Query: 264 HLKAHSVVA-SNNKVQNCKKCFKCCQV---FPSNEENLRKHFEKVHFDLEFDEAH--FYD 317
HL A V S + N K V P + L K D++ F +
Sbjct: 359 HLPAGKQVEIS---LVNGAKNL----VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 318 VVLKCVYRF-RIVQYFLCELCDKTSIHYTYL-----CLHKKLKHSNLTYGGES---PV-- 366
LK RF + F H L ++K L +N+++ + PV
Sbjct: 412 RKLKFSNRFLPVASPF----------HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 367 -----------------------CEPCNLTFKNEWQYLVHNRAVH--ELPPEPNSGAGSV 401
P W+ +A H + P SG G +
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLPVK------WETTTQFKATHILDFGPGGASGLGVL 515
Query: 402 LQNN 405
N
Sbjct: 516 THRN 519
Score = 50.8 bits (121), Expect = 1e-06
Identities = 76/538 (14%), Positives = 142/538 (26%), Gaps = 207/538 (38%)
Query: 105 AMNPTMLTTTRVGNI--SLKIPRCEECDINFP-SKMRHTFHLQHHLEDP----------- 150
+ P L+ G++ L +P F S+++ F L +P
Sbjct: 5 STRPLTLSH---GSLEHVLLVPT----ASFFIASQLQEQF--NKILPEPTEGFAADDEPT 55
Query: 151 ---DLPVNFM----HECRE-CGSQFADILKHSLET-HLSFIHVQDNQLKCTICNKENFKN 201
+L F+ QF +L L ++ D
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND--------------- 100
Query: 202 QLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRL 261
IH + ++E + + K K + K+ + M+ +PF S L
Sbjct: 101 -----IHALAAKLLQENDTTLVKTKELIKNYIT---ARIMAKRPFD-------KKSNSAL 145
Query: 262 RAHLKAHSVVASNNKVQNCKKCFKCCQVFP--SNEENLRKHFEKVHFDLEFDE-AHFYDV 318
+A + +F N ++ F+E Y
Sbjct: 146 ---FRA----VGEGNA-------QLVAIFGGQGNTDDY------------FEELRDLYQ- 178
Query: 319 VLKCVYRFRIVQYF------LCELC----DKTSIHYTYLCLHKKLKHSNLT----YGGES 364
Y + L EL D + L + + L++ + T Y
Sbjct: 179 ----TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 365 PVCEPCN-LTFKNEWQ---YLVHNRAVHELPPEPNSGAGSVLQNNPYPPLRKAKQHVKSV 420
P+ P + Q Y+V + + P L+ A H + +
Sbjct: 235 PISCPLIGVI-----QLAHYVVTAK-LLGFTPG-----------ELRSYLKGATGHSQGL 277
Query: 421 TCSVCEKAFSSKEN----------------CKAHYTRQHGNKEPK----EPKSGEGLPA- 459
+V S E+ + + + + P ++ EG+P+
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 460 --------LEQLLKMKPYTCEICSKTYTVEGSLLTHYDMHSGEFYQCDVCFKEFRSSVTL 511
EQ+ + + H + ++L
Sbjct: 338 MLSISNLTQEQVQD------------------YVNKTNSHLPA---------GKQVEISL 370
Query: 512 RNHTRRHDNFSCDECSVEC---QDLNALRMHTLREHGYKILACEKCD---VKFTHKAL 563
N + N V Q L L + LR K A D + F+ + L
Sbjct: 371 VN-GAK--NL------VVSGPPQSLYGLNLT-LR----KAKAPSGLDQSRIPFSERKL 414
Score = 40.4 bits (94), Expect = 0.002
Identities = 39/235 (16%), Positives = 70/235 (29%), Gaps = 102/235 (43%)
Query: 3 IALIQLLKAETLL---------S-GEHSALSIDQVERSDDFKPPSSTLPRAQPKRLGDDD 52
A + LK++ L+ S GE++AL +D S +
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGHSLGEYAAL----ASLADVM-SIESLVE----------- 1784
Query: 53 ILLRKRPHKKKKARLLKEEVP---VVMVRQAMVTCHTAVHQATPWQEVPGSIPSQAMNPT 109
++ R ++ VP + M+ A+NP
Sbjct: 1785 -VVFYR------GMTMQVAVPRDELGRSNYGMI----------------------AINP- 1814
Query: 110 MLTTTRVGNISLKIPRCEECDINFPSKM-RHTFHLQHHLEDPDLPVNFMHECRECGSQFA 168
G ++ +E ++ + T L +E VN+ Q+
Sbjct: 1815 -------GRVAASF--SQEALQYVVERVGKRTGWL---VE----IVNY--NVE--NQQYV 1854
Query: 169 ---DILKHSLET---HLSFIHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVRE 217
D +L+T L+FI +Q K I +L S+ + E V
Sbjct: 1855 AAGD--LRALDTVTNVLNFIKLQ----KIDII-------ELQKSLSL---EEVEG 1893
Score = 31.9 bits (72), Expect = 0.83
Identities = 44/279 (15%), Positives = 73/279 (26%), Gaps = 82/279 (29%)
Query: 340 TSIHYTYLCL----HKKLKHSNLTYGGESPVCEPCNLTFKNEWQYLVHNRAVHELPPEPN 395
T+ + L +K L + + P L K +L + + P
Sbjct: 24 TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK----FLGY--VSSLVEPSKV 77
Query: 396 SGAGSVLQ------NNPYPPLRKAKQH--VKSVTCSVCEKAFSSKENCKAHYT-RQHGNK 446
VL N Y L H + +KE K + T R +
Sbjct: 78 GQFDQVLNLCLTEFENCY--LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 447 EPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTVEGSLLTHYDMHSGEFYQ--CDVCFKE 504
+ + AL + + ++ + G G Q D F+E
Sbjct: 136 PFDKKSN----SALFRAVGEGN------AQLVAIFG----------G---QGNTDDYFEE 172
Query: 505 FRSSVTLRN--HTRRH--DNFSCDECSVECQDL--NALRMHTLREHGYKILACEKCDVKF 558
LR+ T + + +L L + G IL
Sbjct: 173 ------LRDLYQTYHVLVGDL-IKFSAETLSELIRTTLDAEKVFTQGLNIL--------- 216
Query: 559 THKALLAEHINTKHNTDVTLKC----------QLCNVVV 587
L E+ + + D L QL + VV
Sbjct: 217 ---EWL-ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV 251
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 49.0 bits (118), Expect = 6e-08
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 218 YECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
+C C +K+ L+ H H + +PFKC C + S L H+K
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 47.1 bits (113), Expect = 3e-07
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
P C CS + + + +L H +H + ++C+ C + + L H ++
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 42.1 bits (100), Expect = 2e-05
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 190 KCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSH 240
KC+ C+ + ++ +L IH R H R ++C C S L +H
Sbjct: 11 KCSECSY-SCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 39.4 bits (93), Expect = 1e-04
Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 21/73 (28%)
Query: 422 CSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTVE 481
CS C + SSK + H R H + +P+ C CS
Sbjct: 12 CSECSYSCSSKAALRIHE-RIH---------CTD-----------RPFKCNYCSFDTKQP 50
Query: 482 GSLLTHYDMHSGE 494
+L H G+
Sbjct: 51 SNLSKHMKKFHGD 63
Score = 29.8 bits (68), Expect = 0.34
Identities = 14/78 (17%), Positives = 21/78 (26%), Gaps = 26/78 (33%)
Query: 491 HSGEF-YQCDVCFKEFRSSVTLRNHTRRHDNFSCDECSVECQDLNALRMHTLREHGYKIL 549
S +C C S LR H R+H + +K
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIH---------------------ERIHC-TDRPFK-- 39
Query: 550 ACEKCDVKFTHKALLAEH 567
C C + L++H
Sbjct: 40 -CNYCSFDTKQPSNLSKH 56
Score = 29.4 bits (67), Expect = 0.48
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 239 SHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S S P KC C + S + LR H + H
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIH 32
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 48.7 bits (117), Expect = 8e-08
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 190 KCTI--CNKENFKNQLSLSIHMRY-HENVREYECE--ICKKKFINKSTLKEHSVSHMSVK 244
C C + F N+ L+ H +Y H + + + C C K F K LKEH H +
Sbjct: 9 PCDFPGCGR-IFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 245 PFKCEICG 252
+ CE G
Sbjct: 68 DYICEFSG 75
Score = 41.8 bits (99), Expect = 2e-05
Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 23/84 (27%)
Query: 425 CEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCE--ICSKTYTVEG 482
C + FS+++ H QH + K ++C C K++ +
Sbjct: 15 CGRIFSNRQYLNHHKKYQH---------IHQ-----------KSFSCPEPACGKSFNFKK 54
Query: 483 SLLTHYDMHSGEF-YQCDVCFKEF 505
L H +HS Y C+
Sbjct: 55 HLKEHMKLHSDTRDYICEFSGPSS 78
Score = 39.8 bits (94), Expect = 1e-04
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 9/69 (13%)
Query: 467 KPYTCEI--CSKTYTVEGSLLTHY-DMHSGEF-YQCD--VCFKEFRSSVTLRNHTRRHDN 520
C+ C + ++ L H H + + C C K F L+ H + H +
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65
Query: 521 ---FSCDEC 526
+ C+
Sbjct: 66 TRDYICEFS 74
Score = 39.8 bits (94), Expect = 1e-04
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 216 REYECEI--CKKKFINKSTLKEHS-VSHMSVKPFKCE--ICGHYLSRASRLRAHLKAHS 269
C+ C + F N+ L H H+ K F C CG + L+ H+K HS
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHS 64
Score = 34.4 bits (80), Expect = 0.009
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 156 FMHECRECGSQFADILKHSLETHLSFIHVQDNQLKCT--ICNKENFKNQLSLSIHMRYHE 213
+ CG F++ + L H + H+ C C K +F + L HM+ H
Sbjct: 8 MPCDFPGCGRIFSN--RQYLNHHKKYQHIHQKSFSCPEPACGK-SFNFKKHLKEHMKLHS 64
Query: 214 NVREYECEICKKKF 227
+ R+Y CE
Sbjct: 65 DTRDYICEFSGPSS 78
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 48.8 bits (117), Expect = 9e-08
Identities = 23/81 (28%), Positives = 28/81 (34%), Gaps = 5/81 (6%)
Query: 190 KCTI--CNKENFKNQLSLSIHMRYHENVREYEC--EICKKKFINKSTLKEHSVSHMSVKP 245
C C K FK L +H H YEC E C K+F S LK H H
Sbjct: 3 VCHFENCGK-AFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 246 FKCEICGHYLSRASRLRAHLK 266
K + C + H+
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVA 82
Score = 48.0 bits (115), Expect = 2e-07
Identities = 29/92 (31%), Positives = 35/92 (38%), Gaps = 12/92 (13%)
Query: 218 YECEI--CKKKFINKSTLKEHSVSHMSVKPFKC--EICGHYLSRASRLRAHLKAHSVVAS 273
Y C C K F + LK H SH P++C E C S SRL+ H K H+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA---- 57
Query: 274 NNKVQNCKKCFKCCQVFPSNEENLRKHFEKVH 305
CKK C V KH + H
Sbjct: 58 ---GYPCKKDDSCSFVG-KTWTLYLKHVAECH 85
Score = 43.4 bits (103), Expect = 8e-06
Identities = 20/100 (20%), Positives = 30/100 (30%), Gaps = 24/100 (24%)
Query: 421 TCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTC--EICSKTY 478
C KAF K H H + + PY C E C K +
Sbjct: 5 HFENCGKAFKKHNQLKVH-QFSH---------TQQ-----------LPYECPHEGCDKRF 43
Query: 479 TVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRR 517
++ L H +H+G + D C ++ H
Sbjct: 44 SLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAE 83
Score = 36.1 bits (84), Expect = 0.003
Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 6/81 (7%)
Query: 470 TCEICSKTYTVEGSLLTHYDMHSGEF-YQCDV--CFKEFRSSVTLRNHTRRH---DNFSC 523
E C K + L H H+ + Y+C C K F L+ H + H
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 524 DECSVECQDLNALRMHTLREH 544
D CS + H H
Sbjct: 65 DSCSFVGKTWTLYLKHVAECH 85
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 47.7 bits (114), Expect = 2e-07
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 205 LSIHMRYHENVREYEC--EICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLR 262
L ++ R Y C E C ++F L H H KPF+C IC SR+ L
Sbjct: 9 LLNYVVPKM--RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 66
Query: 263 AHLKAHS 269
H++ H+
Sbjct: 67 THIRTHT 73
Score = 44.6 bits (106), Expect = 2e-06
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 467 KPYTC--EICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+PY C E C + ++ L H +H+G+ +QC +C + F S L H R H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 28.4 bits (64), Expect = 1.1
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 23/79 (29%)
Query: 416 HVKSVTCSV--CEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEI 473
++ C V C++ FS + H R H +G+ KP+ C I
Sbjct: 16 KMRPYACPVESCDRRFSRSDELTRHI-RIH---------TGQ-----------KPFQCRI 54
Query: 474 CSKTYTVEGSLLTHYDMHS 492
C + ++ L TH H+
Sbjct: 55 CMRNFSRSDHLTTHIRTHT 73
Score = 26.9 bits (60), Expect = 4.1
Identities = 18/71 (25%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 504 EFRSSVTLRNHTRRHD-NFSCD--ECSVECQDLNALRMHTLREH-GYKILACEKCDVKFT 559
E L N+ ++C C + L H +R H G K C C F+
Sbjct: 2 EPHPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFS 60
Query: 560 HKALLAEHINT 570
L HI T
Sbjct: 61 RSDHLTTHIRT 71
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 47.8 bits (113), Expect = 5e-07
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 6/93 (6%)
Query: 182 IHVQDNQLKCTICNKENFKNQLSLSIHMRY-----HENVREYECEICKKKFINKSTLKEH 236
I ++ +C C+ + + L++HM +N + K +L E
Sbjct: 13 IFTGASKFRCKDCSAA-YDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEM 71
Query: 237 SVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
+ K KC CGH L H+
Sbjct: 72 EGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 42.8 bits (100), Expect = 3e-05
Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 10/107 (9%)
Query: 483 SLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTR-----RHDNFSCDECSV---ECQDL 533
S + + +G ++C C + + V L H R DN D +
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 534 NALRMHTLREHGYKILACEKCDVKFTHKALLAEH-INTKHNTDVTLK 579
+L +E K+L C C F L+ H I TKH V+
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
Score = 34.7 bits (79), Expect = 0.017
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 7/100 (7%)
Query: 362 GESP-VCEPCNLTFKNEWQYLVHNRAVHELPPEP------NSGAGSVLQNNPYPPLRKAK 414
G S C+ C+ + + VH + N S + + +
Sbjct: 16 GASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKE 75
Query: 415 QHVKSVTCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSG 454
K + C C +F S ++ H + ++ P SG
Sbjct: 76 DAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGPSSG 115
Score = 34.4 bits (78), Expect = 0.022
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 5/86 (5%)
Query: 125 RCEECDINFPSKMRHTFHLQHHLEDPDLPVNFMHECRECGSQFADILKHSLETHLSFIHV 184
RC++C + + + T H+ D HE + + +
Sbjct: 21 RCKDCSAAYDTLVELTVHMNETGHYRDDN----HETDNNNPKRWSKPRKRSLLEMEGKED 76
Query: 185 QDNQLKCTICNKENFKNQLSLSIHMR 210
LKC C F++ LS+HM
Sbjct: 77 AQKVLKCMYCGHS-FESLQDLSVHMI 101
Score = 33.6 bits (76), Expect = 0.046
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 536 LRMHTLREHGYKILACEKCDVKFTHKALLAEHIN-TKHNTDVTLKCQLCN 584
+++ G C+ C + L H+N T H D + N
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNN 56
Score = 33.2 bits (75), Expect = 0.069
Identities = 14/82 (17%), Positives = 22/82 (26%), Gaps = 12/82 (14%)
Query: 418 KSVTCSVCEKAFSSKENCKAH-----YTRQHGNKEPKEPKSGEGLPALEQLLKM------ 466
C C A+ + H + R ++ P LL+M
Sbjct: 18 SKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDA 77
Query: 467 -KPYTCEICSKTYTVEGSLLTH 487
K C C ++ L H
Sbjct: 78 QKVLKCMYCGHSFESLQDLSVH 99
Score = 27.8 bits (61), Expect = 4.6
Identities = 10/70 (14%), Positives = 16/70 (22%), Gaps = 2/70 (2%)
Query: 231 STLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHSVVASNNKVQNCKKCFKCCQVF 290
S+ K + F+C+ C L H+ +N
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHE--TDNNNPKRWSK 62
Query: 291 PSNEENLRKH 300
P L
Sbjct: 63 PRKRSLLEME 72
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 45.9 bits (108), Expect = 5e-07
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 218 YECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
Y CE C + S LK+H +H V+P+ C C L H+K+ +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Score = 39.7 bits (92), Expect = 8e-05
Identities = 13/51 (25%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 469 YTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
Y CE C L H H+ Y C C F++ L H +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 36.2 bits (83), Expect = 0.001
Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 190 KCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVK 244
C C K L H+R H +VR Y C C F K L +H S K
Sbjct: 3 ICEECGIRXKKPS-MLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 30.5 bits (68), Expect = 0.16
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 523 CDECSVECQDLNALRMHTLREHGYKILACEKCDVKFTHKALLAEHINT 570
C+EC + + + L+ H + C C+ F K L +H+ +
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 29.7 bits (66), Expect = 0.36
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
+PY C C+ ++ +G+L H +
Sbjct: 28 RPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 28.5 bits (63), Expect = 0.73
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 496 YQCDVCFKEFRSSVTLRNHTRRHDN---FSCDECSVECQDLNALRMHTLREHGYK 547
Y C+ C + L+ H R H + + C C+ + L H + K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 27.8 bits (61), Expect = 1.7
Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 246 FKCEICGHYLSRASRLRAHLKAHSVVASNNKVQNCKKCFKCCQVFPSNEENLRKH 300
+ CE CG + S L+ H++ H+ + + +C C + + ++++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHT----DVRPYHCTYCNFSFKTKGNLTKHMKSK 52
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 47.9 bits (115), Expect = 5e-07
Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 9/114 (7%)
Query: 159 ECRECGSQFADILKHSLETHLSFIHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVREY 218
+ C F D ++ HL H C C K F L H H + +
Sbjct: 9 PHKGCTKMFRD--NSAMRKHLH-TH-GPRVHVCAECGK-AFVESSKLKRHQLVHTGEKPF 63
Query: 219 ECEI--CKKKFINKSTLKEHSVSHMSVKPFKCEI--CGHYLSRASRLRAHLKAH 268
+C C K+F L+ H H +P+ C C ++++ L++H+ H
Sbjct: 64 QCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 46.7 bits (112), Expect = 1e-06
Identities = 25/106 (23%), Positives = 35/106 (33%), Gaps = 27/106 (25%)
Query: 418 KSVTCSV--CEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICS 475
+++ C C K F + H HG + + C C
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHL-HTHGPR---------------------VHVCAECG 41
Query: 476 KTYTVEGSLLTHYDMHSGEF-YQCDV--CFKEFRSSVTLRNHTRRH 518
K + L H +H+GE +QC C K F LR H R H
Sbjct: 42 KAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 87
Score = 46.0 bits (110), Expect = 2e-06
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 26/103 (25%)
Query: 421 TCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEI--CSKTY 478
C+ C KAF K H H +GE KP+ C C K +
Sbjct: 36 VCAECGKAFVESSKLKRH-QLVH---------TGE-----------KPFQCTFEGCGKRF 74
Query: 479 TVEGSLLTHYDMHSGEF-YQCDV--CFKEFRSSVTLRNHTRRH 518
+++ +L TH +H+G+ Y C C K+F S L++H H
Sbjct: 75 SLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 43.3 bits (103), Expect = 2e-05
Identities = 35/130 (26%), Positives = 49/130 (37%), Gaps = 23/130 (17%)
Query: 126 CEECDINFPSKMRHTFHLQHHL----EDPDLPVNFMHECRECGSQFADILKHSLETHLSF 181
+ C F R ++ HL H C ECG F + L+ H
Sbjct: 10 HKGCTKMF----RDNSAMRKHLHTHGPRV-------HVCAECGKAFVE--SSKLKRHQL- 55
Query: 182 IHVQDNQLKCTI--CNKENFKNQLSLSIHMRYHENVREYECEI--CKKKFINKSTLKEHS 237
+H + +CT C K F +L H+R H R Y C C KKF + LK H
Sbjct: 56 VHTGEKPFQCTFEGCGK-RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Query: 238 VSHMSVKPFK 247
++H K +
Sbjct: 115 LTHAKAKNNQ 124
Score = 39.4 bits (93), Expect = 5e-04
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 218 YECEI--CKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
C C K F + S +++H +H + C CG +S+L+ H H
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVH 57
Score = 32.1 bits (74), Expect = 0.15
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 25/78 (32%)
Query: 421 TCSV--CEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEI--CSK 476
C+ C K FS N + H R H +G+ +PY C C+K
Sbjct: 64 QCTFEGCGKRFSLDFNLRTH-VRIH---------TGD-----------RPYVCPFDGCNK 102
Query: 477 TYTVEGSLLTHYDMHSGE 494
+ +L +H H+
Sbjct: 103 KFAQSTNLKSHILTHAKA 120
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 45.2 bits (108), Expect = 1e-06
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 218 YECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLK 266
+ CE+C + F + LK H SH + KP+ C +C +R L H +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ 51
Score = 45.2 bits (108), Expect = 1e-06
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRR 517
+ + CE+C++ + + L HY H+ E Y C +C + F L H ++
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 38.2 bits (90), Expect = 3e-04
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 190 KCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHS 237
C +C + F Q L H R H N + Y C +C + F + L H+
Sbjct: 4 VCEVCTR-AFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 37.5 bits (88), Expect = 5e-04
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 22/77 (28%)
Query: 422 CSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTVE 481
C VC +AF+ +E+ K HY R H + E KPY C +C++ +T
Sbjct: 5 CEVCTRAFARQEHLKRHY-RSH---------TNE-----------KPYPCGLCNRAFTRR 43
Query: 482 GSLLTHYD-MHSGEFYQ 497
L+ H +HSG +
Sbjct: 44 DLLIRHAQKIHSGNLGE 60
Score = 33.2 bits (77), Expect = 0.018
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 244 KPFKCEICGHYLSRASRLRAHLKAHSVVASNNKVQNCKKCFKCCQVFPSNEENLRKHFEK 303
+ F CE+C +R L+ H ++H +N K C C + + + L +H +K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH----TNEKPYPCGLCNRAF----TRRDLLIRHAQK 52
Query: 304 VH 305
+H
Sbjct: 53 IH 54
Score = 27.5 bits (62), Expect = 2.2
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 496 YQCDVCFKEFRSSVTLRNHTRRHDN---FSCDEC 526
+ C+VC + F L+ H R H N + C C
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLC 36
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 45.7 bits (107), Expect = 2e-06
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Query: 491 HSGEFYQCDVCFKEFRSSVTLRNHTRRHDN-FSCDECSVECQDLNALRMHTLREHGYKIL 549
+ E YQC +C + S + +H R N C CS+ + H + YK L
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHE-SKCEYKKL 70
Query: 550 ACEKCDVKFTHKALLAEHINTKHNTD 575
C +C F + H HN +
Sbjct: 71 TCLECMRTFKSSFSIWRHQVEVHNQN 96
Score = 44.9 bits (105), Expect = 5e-06
Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 4/75 (5%)
Query: 190 KCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+C +CN + + L H R N C C +F + +EH S K C
Sbjct: 18 QCRLCNAK-LSSLLEQGSHERLCRN--AAVCPYCSLRFFSPELKQEHE-SKCEYKKLTCL 73
Query: 250 ICGHYLSRASRLRAH 264
C + + H
Sbjct: 74 ECMRTFKSSFSIWRH 88
Score = 38.3 bits (88), Expect = 8e-04
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 3/86 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEFYQCDVCFKEFRSSVTLRNHTRRHD--NFSCD 524
+ Y C +C+ + +H + C C F S + H + + +C
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERLCR-NAAVCPYCSLRFFSPELKQEHESKCEYKKLTCL 73
Query: 525 ECSVECQDLNALRMHTLREHGYKILA 550
EC + ++ H + H +A
Sbjct: 74 ECMRTFKSSFSIWRHQVEVHNQNNMA 99
Score = 31.4 bits (70), Expect = 0.24
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 159 ECRECGSQFADILKHSLETHLSFIHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVREY 218
+CR C ++ + +L+ +H N C C+ F + H E ++
Sbjct: 18 QCRLCNAKLSSLLE--QGSHERLCR---NAAVCPYCSLR-FFSPELKQEHESKCE-YKKL 70
Query: 219 ECEICKKKFINKSTLKEHSVS 239
C C + F + ++ H V
Sbjct: 71 TCLECMRTFKSSFSIWRHQVE 91
Score = 29.5 bits (65), Expect = 1.1
Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 4/72 (5%)
Query: 513 NHTRRHDNFSCDECSVECQDLNALRMHTLREHGYKILACEKCDVKFTHKALLAEHINTKH 572
+ + + C C+ + L H + C C ++F L EH
Sbjct: 9 SPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAV--CPYCSLRFFSPELKQEH--ESK 64
Query: 573 NTDVTLKCQLCN 584
L C C
Sbjct: 65 CEYKKLTCLECM 76
Score = 29.5 bits (65), Expect = 1.1
Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 11/93 (11%)
Query: 213 ENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHSVVA 272
EN Y+C +C K + H + C C + H
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEHESKCEYKK 69
Query: 273 SNNKVQNCKKCFKCCQVFPSNEENLRKHFEKVH 305
C +C + F S ++ +H +VH
Sbjct: 70 L--------TCLECMRTFKS-SFSIWRHQVEVH 93
Score = 28.7 bits (63), Expect = 2.0
Identities = 17/94 (18%), Positives = 25/94 (26%), Gaps = 23/94 (24%)
Query: 421 TCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTV 480
C +C SS +H R N C CS +
Sbjct: 18 QCRLCNAKLSSLLEQGSH-ERLCRNA----------------------AVCPYCSLRFFS 54
Query: 481 EGSLLTHYDMHSGEFYQCDVCFKEFRSSVTLRNH 514
H + C C + F+SS ++ H
Sbjct: 55 PELKQEHESKCEYKKLTCLECMRTFKSSFSIWRH 88
Score = 27.2 bits (59), Expect = 6.0
Identities = 16/94 (17%), Positives = 26/94 (27%), Gaps = 2/94 (2%)
Query: 351 KKLKHSNLTYGGESPVCEPCNLTFKNEWQYLVHNRAVHELPPEPNSGAGSVLQNNPYPPL 410
++ E C CN + + H R P +
Sbjct: 3 SGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPY--CSLRFFSPELKQE 60
Query: 411 RKAKQHVKSVTCSVCEKAFSSKENCKAHYTRQHG 444
++K K +TC C + F S + H H
Sbjct: 61 HESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHN 94
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 43.5 bits (102), Expect = 5e-06
Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 7/66 (10%)
Query: 204 SLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRA 263
S + H R +C C FI +STL K CE C + + L
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNK 57
Query: 264 HLKAHS 269
S
Sbjct: 58 DEGNES 63
Score = 34.3 bits (78), Expect = 0.010
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 8/65 (12%)
Query: 182 IHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHM 241
IH+ D KC+ C F + +LS + CE C+K ++ L + +
Sbjct: 12 IHLGDRSQKCSKCGII-FIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKDEGNES 63
Query: 242 SVKPF 246
K
Sbjct: 64 GKKTS 68
Score = 31.6 bits (71), Expect = 0.085
Identities = 7/52 (13%), Positives = 13/52 (25%), Gaps = 6/52 (11%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEFYQCDVCFKEFRSSVTLRNHTRRH 518
+ C C + +L + C+ C K+ L
Sbjct: 17 RSQKCSKCGIIFIRRSTLSRR------KTPMCEKCRKDSCQEAALNKDEGNE 62
Score = 30.8 bits (69), Expect = 0.17
Identities = 14/51 (27%), Positives = 19/51 (37%)
Query: 444 GNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTVEGSLLTHYDMHSGE 494
G++ K K G L + K CE C K E +L SG+
Sbjct: 15 GDRSQKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGK 65
Score = 29.2 bits (65), Expect = 0.63
Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 11/56 (19%)
Query: 231 STLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHSVVASNNKVQNCKKCFKC 286
+ + H+ + KC CG R S L S K C+KC K
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTL-----------SRRKTPMCEKCRKD 48
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 41.2 bits (97), Expect = 3e-05
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 204 SLSIHMRYHENVREYECEI--CKKKFINKSTLKEHSVSHMSVKPFKC--EICGHYLSRAS 259
S +R + C C K + S LK H+ +H KPF C + C +R+
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSD 63
Query: 260 RLRAHLKAH 268
L H + H
Sbjct: 64 ELSRHRRTH 72
Score = 39.3 bits (92), Expect = 2e-04
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 465 KMKPYTCEI--CSKTYTVEGSLLTHYDMHSGEF-YQCDV--CFKEFRSSVTLRNHTRRH 518
+++ + C C KTY L H H+GE + C C + F S L H R H
Sbjct: 14 RIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 30.8 bits (70), Expect = 0.17
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 230 KSTLKEHSVSHMSVKPFKCEI--CGHYLSRASRLRAHLKAHS 269
S + ++ C CG ++S L+AH + H+
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHT 43
Score = 25.8 bits (57), Expect = 9.1
Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 29/97 (29%)
Query: 399 GSVLQNNPYPPLRKAKQHVKSVTCSV--CEKAFSSKENCKAHYTRQHGNKEPKEPKSGEG 456
GS + P + + H+ CS C K + + KAH R H +GE
Sbjct: 1 GSSGSSGPQIDSSRIRSHI----CSHPGCGKTYFKSSHLKAHT-RTH---------TGE- 45
Query: 457 LPALEQLLKMKPYTC--EICSKTYTVEGSLLTHYDMH 491
KP++C + C + + L H H
Sbjct: 46 ----------KPFSCSWKGCERRFARSDELSRHRRTH 72
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 7e-05
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ ++C+IC K F +S L HS+ H + KP
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.024
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCD 499
KP+ C+IC K++ L H +H+ E
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.082
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE ++CD+C K F L H+ H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 30.2 bits (69), Expect = 0.13
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KPFKC+ICG SRL H H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 1e-04
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 207 IHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ YEC++C+K F + ++L +H H KP
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.034
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C++C K ++ SL H +HSGE
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.77
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y+CDVC K F +L H R H
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 26.7 bits (60), Expect = 2.8
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
S KP++C++C S + L H + HS
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHS 36
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 39.1 bits (92), Expect = 1e-04
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 218 YECEICKKKFINKSTLKEHSVS-HMSVKPFKCEICG 252
Y C+ C K F L H H S +P KC++
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWV 48
Score = 38.3 bits (90), Expect = 2e-04
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 467 KPYTCEICSKTYTVEGSLLTHY-DMHSGEF-YQCDVCFKEFRS 507
KPY C+ C K ++ L H +H+ E ++C V S
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 35.2 bits (82), Expect = 0.003
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 20/59 (33%)
Query: 421 TCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYT 479
C C K FS ++ H + H + E +P+ C++ +
Sbjct: 14 ICQSCGKGFSRPDHLNGHIKQVH---------TSE-----------RPHKCQVWVSGPS 52
Score = 33.7 bits (78), Expect = 0.011
Identities = 10/46 (21%), Positives = 14/46 (30%), Gaps = 5/46 (10%)
Query: 486 THYDMHSGE-FYQCDVCFKEFRSSVTLRNHTRR-HDN---FSCDEC 526
+ S Y C C K F L H ++ H + C
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 32.2 bits (74), Expect = 0.039
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLK 266
S KP+ C+ CG SR L H+K
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIK 33
Score = 29.1 bits (66), Expect = 0.41
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 190 KCTICNKENFKNQLSLSIHMRY-HENVREYECEICKKKF 227
C C K F L+ H++ H + R ++C++
Sbjct: 14 ICQSCGK-GFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 25.2 bits (56), Expect = 9.8
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 158 HECRECGSQFADILKHSLETHLSFIHVQDNQLKCTICNK 196
+ C+ CG F+ L H+ +H + KC +
Sbjct: 13 YICQSCGKGFS--RPDHLNGHIKQVHTSERPHKCQVWVS 49
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 2e-04
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ Y CE C K FI+ S L+EH H KP
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.072
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY CE C K + + L H +H+GE
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.28
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y C+ C K F L+ H R H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 29.0 bits (66), Expect = 0.38
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP+ CE CG S+L+ H + H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 38.3 bits (90), Expect = 2e-04
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ Y+CE C K FI + L H + H KP
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.022
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY CE C K + L TH+ +H+GE
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.42
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y+C+ C K F L H H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 29.0 bits (66), Expect = 0.42
Identities = 11/33 (33%), Positives = 12/33 (36%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP+KCE CG L H H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 2e-04
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ Y+C C K F KS L+ H H +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 32.9 bits (76), Expect = 0.014
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C C K++T + L H H+GE
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 30.2 bits (69), Expect = 0.13
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP+KC CG + SRLR H K H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 29.8 bits (68), Expect = 0.20
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y+C C K F LR H + H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 3e-04
Identities = 13/42 (30%), Positives = 15/42 (35%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
V+ Y C C K F S+L H V H KP
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.040
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C C K ++V SL TH +H+GE
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.47
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +G Y C+ C K F +L H H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 28.6 bits (65), Expect = 0.56
Identities = 12/33 (36%), Positives = 13/33 (39%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S VKP+ C CG S S L H H
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 40.3 bits (93), Expect = 3e-04
Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 7/124 (5%)
Query: 423 SVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTVEG 482
S +K S+ + H T + + + P ++L++ T +
Sbjct: 8 SGSKKYLSNHKGIFIHVTL------EELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESS 61
Query: 483 SLLTHYDMHSGEFYQCDVCFKEFRSSVTLRNHTRRHDN-FSCDECSVECQDLNALRMHTL 541
L + + C +C F SSV+L+ H R ++ C C E ++ H
Sbjct: 62 YLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTDSALDHVC 121
Query: 542 REHG 545
++H
Sbjct: 122 KKHN 125
Score = 38.8 bits (89), Expect = 8e-04
Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 18/121 (14%)
Query: 193 ICNKENFKNQLSLSIHMRYHENVREYE--------CEICKKKFINKSTLKEHSVSHMSVK 244
+ N + ++L RYH+ E + I + +++S+ ++ ++
Sbjct: 14 LSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAIS 73
Query: 245 PFKCEICGHYLSRASRLRAHLKAHSVVASNNKVQNCKKCFKCCQVFPSNEENLRKHFEKV 304
F C +C S + L+ H++ ++ K C C + F ++ ++ H K
Sbjct: 74 QFVCPLCLMPFSSSVSLKQHIRYT---------EHTKVCPVCKKEF-TSTDSALDHVCKK 123
Query: 305 H 305
H
Sbjct: 124 H 124
Score = 36.5 bits (83), Expect = 0.005
Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 192 TICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCEIC 251
T+ + ++ S + + + ++ C +C F + +LK+H C +C
Sbjct: 49 TLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVC 106
Query: 252 GHYLSRASRLRAHL-KAHSVVAS 273
+ H+ K H++ S
Sbjct: 107 KKEFTSTDSALDHVCKKHNICVS 129
Score = 30.7 bits (68), Expect = 0.50
Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 23/90 (25%)
Query: 398 AGSVLQNNPYPPLRKAKQHVKSVTCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGL 457
+L + Y A + + C +C FSS + K H
Sbjct: 53 NPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE-------------- 98
Query: 458 PALEQLLKMKPYTCEICSKTYTVEGSLLTH 487
C +C K +T S L H
Sbjct: 99 ---------HTKVCPVCKKEFTSTDSALDH 119
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 3e-04
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 207 IHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ Y+C++C K+F S L+ H H KP
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.030
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
K Y C++C K ++ L TH +H+GE
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.031
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S M K +KC++CG S++S L+ H + H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 31.3 bits (72), Expect = 0.056
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ GE Y+CDVC KEF S L+ H R H
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-04
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 207 IHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ Y+CE C K + +K L H H +P
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 32.9 bits (76), Expect = 0.016
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY CE C K Y + +L H +H+GE
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 29.4 bits (67), Expect = 0.28
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP+KCE CG + L H K H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 28.6 bits (65), Expect = 0.54
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y+C+ C K + S L H + H
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 38.0 bits (88), Expect = 3e-04
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 216 REYECEICKKKFINKSTLKEHSVSHMSVKPFKCEIC 251
++ CEIC K F + L H +SH KP+
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 31.4 bits (71), Expect = 0.060
Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVC 501
K CEIC K + L H HSGE Y
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 31.1 bits (70), Expect = 0.086
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 496 YQCDVCFKEFRSSVTLRNHTRRHDN---FSCDECS 527
C++C K FR L H H +S S
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 28.0 bits (62), Expect = 1.1
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 244 KPFKCEICGHYLSRASRLRAHLKAHS 269
K CEICG L H +HS
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHS 36
Score = 26.8 bits (59), Expect = 2.7
Identities = 15/67 (22%), Positives = 20/67 (29%), Gaps = 21/67 (31%)
Query: 409 PLRKAKQHVKSVTCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKP 468
+ + K V C +C K F + H H SGE KP
Sbjct: 2 SSGSSGRTRKQVACEICGKIFRDVYHLNRH-KLSH---------SGE-----------KP 40
Query: 469 YTCEICS 475
Y+ S
Sbjct: 41 YSSGPSS 47
Score = 26.4 bits (58), Expect = 4.1
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 190 KCTICNKENFKNQLSLSIHMRYHENVREYECEIC 223
C IC K F++ L+ H H + Y
Sbjct: 14 ACEICGK-IFRDVYHLNRHKLSHSGEKPYSSGPS 46
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 37.5 bits (88), Expect = 3e-04
Identities = 10/42 (23%), Positives = 12/42 (28%)
Query: 207 IHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ +EC C K F K L H H K
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 32.5 bits (75), Expect = 0.019
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KP+ C C K++ +G+L+TH +H+GE
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 28.7 bits (65), Expect = 0.53
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +G+ ++C C K FR+ L H R H
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 27.5 bits (62), Expect = 1.3
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KPF+C CG L H + H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 4e-04
Identities = 14/42 (33%), Positives = 15/42 (35%)
Query: 207 IHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ YEC IC K F KS L H H KP
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.017
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C IC K++T + L H +H+GE
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.66
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y+C +C K F L H + H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 27.9 bits (63), Expect = 1.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP++C ICG ++ S+L H + H
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 37.1 bits (87), Expect = 4e-04
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 207 IHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ YEC C+K F KS L H +H
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 30.1 bits (69), Expect = 0.15
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C C K + + +L+ H H+GE
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 27.4 bits (62), Expect = 1.5
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP++C C + S L H + H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 27.1 bits (61), Expect = 1.7
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y+C+ C K F + L H R H
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 5e-04
Identities = 16/41 (39%), Positives = 16/41 (39%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
R YEC C K FI KSTL H H KP
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.15
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
+ Y C C K + + +L H +H GE
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.63
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y+C C K F TL H R H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 27.1 bits (61), Expect = 2.0
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 235 EHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S + ++C CG + S L H + H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 5e-04
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ Y+CE C K + + L H HM K
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 32.1 bits (74), Expect = 0.035
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY CE C K Y +L H +H GE
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGE 38
Score = 30.5 bits (70), Expect = 0.11
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP+KCE CG +R L H + H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 30.2 bits (69), Expect = 0.17
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ S E Y+C+ C K + + L H R H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 38.8 bits (90), Expect = 5e-04
Identities = 18/91 (19%), Positives = 24/91 (26%), Gaps = 23/91 (25%)
Query: 158 HECRECGSQFADILKHSLETHLSFIHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVRE 217
+ C F+ H L TH++ HV + +C E
Sbjct: 26 RPKKSCDRTFST--MHELVTHVTMEHVGGPEQNNHVCYWEE------------------- 64
Query: 218 YECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
C K F K L H H K
Sbjct: 65 --CPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 33.8 bits (77), Expect = 0.029
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 9/67 (13%)
Query: 212 HENVREYECEICKKKFINKSTLKEH-SVSHMSVKPFK--------CEICGHYLSRASRLR 262
E + C + F L H ++ H+ C G +L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 263 AHLKAHS 269
H++ H+
Sbjct: 80 NHIRVHT 86
Score = 33.4 bits (76), Expect = 0.031
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 10/62 (16%)
Query: 467 KPYTCEICSKTYTVEGSLLTHY-DMHSGEFYQ---------CDVCFKEFRSSVTLRNHTR 516
+ C +T++ L+TH H G Q C K F++ L NH R
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR 83
Query: 517 RH 518
H
Sbjct: 84 VH 85
Score = 26.5 bits (58), Expect = 8.1
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 543 EHGYKILACEKCDVKFTHKALLAEHINTKH 572
+ + CD F+ L H+ +H
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 5e-04
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 207 IHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ YEC +C K F ++ +L H H KP
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 32.9 bits (76), Expect = 0.016
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C +C K ++ SL H +HSG+
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 27.5 bits (62), Expect = 1.4
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 487 HYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+GE Y+C VC K F +L H R H
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 26.3 bits (59), Expect = 3.4
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
S KP++C +CG S L H + HS
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHS 36
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 37.1 bits (87), Expect = 5e-04
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICG 252
+ ++CE C K F S H SH KP G
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 31.0 bits (71), Expect = 0.073
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCD 499
KP+ CE C K + +H HSGE
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.15
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ SGE ++C+ C K F ++ +H R H
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 29.4 bits (67), Expect = 0.29
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
S KPFKCE CG S+ +H ++HS
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHS 36
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.2 bits (87), Expect = 5e-04
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ Y+C C K F + S+ +H H +P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 30.6 bits (70), Expect = 0.11
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C C K + S H +H+G+
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 28.7 bits (65), Expect = 0.54
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y+C C K F + + H R H
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 28.7 bits (65), Expect = 0.58
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP+KC CG S H + H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 5e-04
Identities = 15/41 (36%), Positives = 15/41 (36%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
R YEC C K F KSTL H H KP
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.21
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
+ Y C C K + + +L+ H +H+GE
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 1.3
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 235 EHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S + ++C CG +R S L H + H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 27.5 bits (62), Expect = 1.6
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y+C C K F TL H R H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 6e-04
Identities = 13/41 (31%), Positives = 14/41 (34%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ YEC C K FI KS L H H P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 31.4 bits (72), Expect = 0.048
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C C K++ + L H +H+GE
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 28.3 bits (64), Expect = 0.82
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y+C C K F L H R H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 27.1 bits (61), Expect = 2.1
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP++C CG + S+L H + H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 6e-04
Identities = 11/43 (25%), Positives = 13/43 (30%)
Query: 207 IHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ Y+C C K F S L H H KP
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.26
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C C K ++ L H +H+GE
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 1.1
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +G YQC+ C K F + L H R H
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 26.7 bits (60), Expect = 2.4
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP++C CG S+ S+L H + H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 6e-04
Identities = 13/44 (29%), Positives = 15/44 (34%)
Query: 206 SIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ +EC C K F KSTL H H KP
Sbjct: 1 GSSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.077
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
K + C C K +T + +L H +H+GE
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.29
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGE-FYQCDVCFKEFRSSVTLRNHTRRH 518
+ +G ++C C K F TL H + H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 27.9 bits (63), Expect = 0.90
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S K F+C CG +R S L H K H
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 36.7 bits (86), Expect = 6e-04
Identities = 12/41 (29%), Positives = 14/41 (34%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
V Y+C C+K F K L H H KP
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 32.5 bits (75), Expect = 0.020
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S V P+KC C S RL H + H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 32.5 bits (75), Expect = 0.020
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
PY C C K+++ + LL H MH+ E
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVHQRMHTRE 38
Score = 27.9 bits (63), Expect = 0.94
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +G Y+C C K F + L H R H
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 26.7 bits (60), Expect = 2.7
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 422 CSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSG 454
CS CEK+FS K H R H ++P P SG
Sbjct: 15 CSQCEKSFSGKLRLLVHQ-RMHTREKPSGPSSG 46
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 6e-04
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ YEC C K F +S+L H H KP
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 32.5 bits (75), Expect = 0.024
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C C K ++V SL TH +H+G+
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 27.5 bits (62), Expect = 1.3
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y+C+ C K F +L H H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 26.7 bits (60), Expect = 2.8
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP++C CG S S L H H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 6e-04
Identities = 12/43 (27%), Positives = 14/43 (32%)
Query: 207 IHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ Y C C K F KS L H +H KP
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.071
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C C KT++ + L H H+GE
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.74
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ SGE Y C+ C K F L H R H
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 26.7 bits (60), Expect = 2.5
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP+ C CG S+ S L AH + H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 36.7 bits (86), Expect = 7e-04
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ ++C C K F +S L H H KP
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.028
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KP+ C C K ++ +L H+ +H+GE
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.19
Identities = 15/33 (45%), Positives = 15/33 (45%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KPFKC CG SR S L H K H
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 27.9 bits (63), Expect = 1.0
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE ++C C K F L H + H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 36.5 bits (85), Expect = 7e-04
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
PY C C K++T GSL H S
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSCSQS 37
Score = 28.8 bits (65), Expect = 0.44
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
S S P+ C CG ++ L H ++ S
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCS 35
Score = 28.4 bits (64), Expect = 0.51
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 218 YECEICKKKFINKSTLKEHSVSHMSVKPFK 247
Y C C K F + +L H S P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 26.5 bits (59), Expect = 2.9
Identities = 10/29 (34%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 491 HSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
GE Y C C K F +L H R
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.8 bits (86), Expect = 7e-04
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
E + Y+C C K F L +H ++H KP
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 31.7 bits (73), Expect = 0.041
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C C K+++ L H+ H+ E
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTRE 38
Score = 29.0 bits (66), Expect = 0.33
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP++C CG S + RL H H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 29.0 bits (66), Expect = 0.35
Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ GE YQC C K F S L H H
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 36.4 bits (85), Expect = 8e-04
Identities = 13/41 (31%), Positives = 15/41 (36%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ YEC C K FI KS L H +H V
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 30.2 bits (69), Expect = 0.15
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C C K + + L+ H H+G
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAGV 38
Score = 27.5 bits (62), Expect = 1.2
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP++C CG S L H + H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 27.5 bits (62), Expect = 1.3
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ SGE Y+C+ C K F L H R H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 8e-04
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ ++C CKK F S+L H H KP
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.040
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
K + C C KT+T SL H +H+GE
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.12
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +G+ ++C+ C K F S +L H R H
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 28.2 bits (64), Expect = 0.72
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S K FKC C +++S L H + H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 8e-04
Identities = 12/42 (28%), Positives = 14/42 (33%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ Y+C C K F S L H V H KP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.10
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C C K + +L TH +H+GE
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.33
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y+C+ C K FR+ L H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 27.9 bits (63), Expect = 0.94
Identities = 11/33 (33%), Positives = 12/33 (36%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP+KC CG S L H H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 36.3 bits (85), Expect = 8e-04
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY CEIC + +L +H +H+G
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGS 37
Score = 34.4 bits (80), Expect = 0.004
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S S KP+ CEICG L++HL+ H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 33.6 bits (78), Expect = 0.007
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 487 HYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
GE Y C++C FR TL++H R H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 31.7 bits (73), Expect = 0.036
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPF 246
+ Y CEIC +F + TLK H H P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 25.5 bits (57), Expect = 5.4
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 190 KCTICNKENFKNQLSLSIHMRYH 212
C IC F++ +L H+R H
Sbjct: 13 PCEICGT-RFRHLQTLKSHLRIH 34
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 36.2 bits (84), Expect = 8e-04
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHSVV 271
+ +KPF+C C SR+ L H K H +V
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 31.2 bits (71), Expect = 0.060
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSV 243
R ++ ++C C + F L H HM V
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 28.1 bits (63), Expect = 0.80
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 491 HSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+G +QC C + F S L H +RH
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 36.3 bits (85), Expect = 9e-04
Identities = 11/42 (26%), Positives = 13/42 (30%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ +EC C K F S L H H KP
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.035
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KP+ C C K++++ L TH +H+GE
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.97
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE ++C C K F S L H R H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 27.5 bits (62), Expect = 1.3
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KPF+C CG S +S+L H + H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 9e-04
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ ++CE C K+F S L H H KP
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.038
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KP+ CE C K +T L +H +H+GE
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.100
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KPFKCE CG ++ S+L +H + H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 30.2 bits (69), Expect = 0.13
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ SGE ++C+ C K F + L +H R H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 36.4 bits (85), Expect = 9e-04
Identities = 15/41 (36%), Positives = 16/41 (39%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
V+ Y C C K F KS L H SH VKP
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 31.3 bits (72), Expect = 0.056
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C C+KT++++ L+ H H+G
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 28.3 bits (64), Expect = 0.63
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S VKP+ C C S S+L H ++H
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 27.5 bits (62), Expect = 1.3
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +G Y C C K F L H R H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 9e-04
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ YEC++C K F K+ L +H +H KP
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.096
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C++CSK +T + L H H+GE
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.90
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y+C VC K F L H + H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 26.3 bits (59), Expect = 3.1
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP++C++C ++ + L H K H
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 9e-04
Identities = 11/42 (26%), Positives = 13/42 (30%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ Y+C C K F S L H H KP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.13
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C C K ++ L H +H+GE
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.90
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP+KC CG S+ S+L H + H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 27.5 bits (62), Expect = 1.5
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y+C+ C K F + L H R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 0.001
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ ++CE C K+F S L H H KP
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.089
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KP+ CE C K +T L +H +H+GE
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.17
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 235 EHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KPF+CE CG ++ S L +H + H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 29.1 bits (66), Expect = 0.33
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ SGE +QC+ C K F + L +H R H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 36.1 bits (84), Expect = 0.001
Identities = 10/44 (22%), Positives = 13/44 (29%), Gaps = 2/44 (4%)
Query: 208 HMRYHENVREYEC--EICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ + C C +F L H SH VKP
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 28.0 bits (63), Expect = 0.81
Identities = 10/45 (22%), Positives = 13/45 (28%), Gaps = 6/45 (13%)
Query: 486 THYDMHSGEF-YQCDV--CFKEFRSSVTLRNHTRRHDN---FSCD 524
+ +GE + C C F S L H R H
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 27.3 bits (61), Expect = 1.8
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 467 KPYTC--EICSKTYTVEGSLLTHYDMHSGEF-YQCD 499
KP+ C C ++ L H HSG
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 26.9 bits (60), Expect = 2.6
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 236 HSVSHMSVKPFKC--EICGHYLSRASRLRAHLKAHS 269
S KPF C CG SR+ L H ++HS
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHS 38
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 0.001
Identities = 11/41 (26%), Positives = 14/41 (34%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ Y+C C K F KS L H SH +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 30.9 bits (71), Expect = 0.070
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C C K +T + L H H+GE
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 28.6 bits (65), Expect = 0.58
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP+KC CG +R S L H ++H
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 27.1 bits (61), Expect = 1.6
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y+C C K F L H + H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 0.001
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ Y+C C K F + L EH H +P
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 29.4 bits (67), Expect = 0.30
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C C K + L H +H+G
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 29.0 bits (66), Expect = 0.41
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP+KC CG R + L H + H
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 28.2 bits (64), Expect = 0.70
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGE-FYQCDVCFKEFRSSVTLRNHTRRH 518
+ SGE Y+C C K F L H R H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ Y C +C K F+ + L +H H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 30.9 bits (71), Expect = 0.083
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCD 499
KPY+C +C K + + L H +H+ E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 29.8 bits (68), Expect = 0.23
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 487 HYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+GE Y C+VC K F S L H R H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 27.9 bits (63), Expect = 1.1
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 235 EHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP+ C +CG ++ L HL+ H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ ++C C K F + L +H H KP
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.22
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KP+ C C K ++ L H +H+GE
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.71
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE + C C K F + L H R H
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 27.9 bits (63), Expect = 1.2
Identities = 11/33 (33%), Positives = 12/33 (36%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KPF C CG S L H + H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ Y+C C K F S L +H H KP
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.16
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
K Y C C K ++ L H +H+GE
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.20
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S K +KC CG SR S+L H K H
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 27.9 bits (63), Expect = 1.1
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGE-FYQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y+C+ C K F + L H + H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ Y+C++C K F S+L H H KP
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.022
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C++C K++ SL H +H+GE
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.087
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y+CDVC K FR +L H R H
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 28.2 bits (64), Expect = 0.76
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP+KC++C S L H + H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ Y C C K F +KS L H +H KP
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.16
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C C K ++ + L+ H HSGE
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 29.1 bits (66), Expect = 0.38
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y C C K F S L H R H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 28.3 bits (64), Expect = 0.69
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
S KP+ C CG S S L H++ HS
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHS 36
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 15/41 (36%), Positives = 16/41 (39%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
R YEC C K F KS+L H SH KP
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 31.4 bits (72), Expect = 0.065
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
+PY C C K + + SL+ H H+GE
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.88
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +G+ Y+C C K F++ +L H R H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 26.0 bits (58), Expect = 4.3
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S +P++C CG S L H ++H
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ Y+C C K F +S+L H +H KP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 31.4 bits (72), Expect = 0.058
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C C K + SL H HSGE
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 28.7 bits (65), Expect = 0.46
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y+C+ C K FR+ +L H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
Score = 26.0 bits (58), Expect = 4.8
Identities = 11/33 (33%), Positives = 12/33 (36%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP+KC CG S L H H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 0.002
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ Y+C C K F + S L H H KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.11
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C C K + L H +H+GE
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.27
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y+C+ C K FR + L H R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 28.6 bits (65), Expect = 0.55
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP+KC CG S L H + H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 0.002
Identities = 13/42 (30%), Positives = 14/42 (33%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ Y C C K FI KS L H H KP
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.18
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C C K++ + L H +H+GE
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 1.3
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y C+ C K F L H R H
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 27.5 bits (62), Expect = 1.4
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP+ C CG + S L H + H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.002
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ Y C C K F +S L +H H KP
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 32.5 bits (75), Expect = 0.023
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C C K +T+ +L+ H +H+ +
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 28.2 bits (64), Expect = 0.78
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y C C K F L H + H
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 27.5 bits (62), Expect = 1.5
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP+ C CG + S L H K H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.002
Identities = 8/41 (19%), Positives = 12/41 (29%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ Y+C C K + + L H H K
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 30.2 bits (69), Expect = 0.13
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCD 499
KPY C C K Y L H +H+GE
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 28.3 bits (64), Expect = 0.67
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP+KC CG R L H + H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 28.3 bits (64), Expect = 0.69
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ SGE Y+C C K ++ + L H R H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.002
Identities = 12/41 (29%), Positives = 12/41 (29%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
R Y C C K F S L EH H K
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 29.4 bits (67), Expect = 0.30
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
S +P+ C CG R S L HLK H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHF 36
Score = 29.0 bits (66), Expect = 0.40
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE-FYQC 498
+PY C C K + L+ H H E
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 27.5 bits (62), Expect = 1.2
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 487 HYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
SGE Y C+ C K F L H +RH
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.5 bits (83), Expect = 0.002
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ +EC C+K F KS L H +H KP
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.092
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KP+ C C K + + +L+ H H+GE
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 27.4 bits (62), Expect = 1.2
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE ++C C K F + L H R H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 27.4 bits (62), Expect = 1.3
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KPF+C C + S L H + H
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/41 (24%), Positives = 13/41 (31%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ Y C+ C K F L +H H KP
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.055
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
K Y C+ C K+++ LL H +HSGE
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.17
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y C C K F + L H R H
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 28.3 bits (64), Expect = 0.80
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
S K + C+ CG SRA L H + HS
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHS 36
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
R Y C +C K F ++S L +H H KP
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.030
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
+PY C +C K +T +L+ H +H+GE
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.61
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y C VC K F L H + H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 26.3 bits (59), Expect = 3.4
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S +P+ C +CG + S L H K H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ Y C C K F ++S L H H KP
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.026
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C C K +T +L TH +H+GE
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.49
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y+C C K F L H + H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 27.5 bits (62), Expect = 1.3
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP++C CG + S L H K H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/41 (29%), Positives = 13/41 (31%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
YEC C K F K L H +H KP
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.24
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
PY C C K ++ + L++H H+GE
Sbjct: 11 NPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 27.5 bits (62), Expect = 1.2
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y+C C K F L +H R H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 27.1 bits (61), Expect = 2.0
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S P++C CG SR +L +H + H
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/41 (24%), Positives = 12/41 (29%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ +EC C K F S L H H P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 31.4 bits (72), Expect = 0.061
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KP+ C C K+++ L+ H +H+GE
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 26.7 bits (60), Expect = 2.5
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE ++C C K F + L H R H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 26.3 bits (59), Expect = 3.1
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP +C CG S S+L H + H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY CE C + L H +H+G
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGS 37
Score = 35.2 bits (82), Expect = 0.003
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S S KP+KCE CG + + LRAH+ H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 32.5 bits (75), Expect = 0.019
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPF 246
+ Y+CE C +F+ + L+ H + H P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 31.0 bits (71), Expect = 0.080
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 487 HYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
GE Y+C+ C F LR H H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 9/41 (21%), Positives = 13/41 (31%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ C C K F +K+ L H H +P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 31.7 bits (73), Expect = 0.046
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
P+ C C K +T + +L+ H +H+GE
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 28.6 bits (65), Expect = 0.58
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE + C C K F L H + H
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 27.8 bits (63), Expect = 0.87
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S PF C CG + + L H K H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ Y C+ C K F S L +H H KP
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.017
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C+ C K++ LL H +HSGE
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 29.5 bits (67), Expect = 0.23
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y C C K FR + L H R H
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
Score = 27.1 bits (61), Expect = 2.0
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
S KP+ C+ CG AS L H + HS
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHS 36
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
++ Y C C K F +KS L H+ +H
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 30.1 bits (69), Expect = 0.14
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C C K + + L+ H H+GE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 29.4 bits (67), Expect = 0.24
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +G Y C+ C K FRS L HTR H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 26.7 bits (60), Expect = 2.3
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S +KP+ C CG S L H + H
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/41 (24%), Positives = 13/41 (31%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ Y C+ C K F + L H H KP
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.068
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C+ C K + + L+ H +H+GE
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.54
Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ SGE Y CD C K F S L H R H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 27.1 bits (61), Expect = 2.0
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP+ C+ CG ++ L H + H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.003
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ Y+C++C K F S L +H H +P
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 31.3 bits (72), Expect = 0.057
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C++C K + V L+ H+ +HSGE
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 30.6 bits (70), Expect = 0.12
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 487 HYDMHSGE-FYQCDVCFKEFRSSVTLRNHTRRH 518
+GE Y+C VC K FR S L H H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 27.5 bits (62), Expect = 1.2
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 235 EHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
S KP+KC++CG +S L H HS
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHS 36
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 34.8 bits (81), Expect = 0.003
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 218 YECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ C C+K F +KS L H +H KP
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 31.4 bits (72), Expect = 0.059
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KP+ C C K ++ + LL H H+ E
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 27.9 bits (63), Expect = 0.92
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 237 SVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
S KPF C C S S L H + H+
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHA 34
Score = 27.5 bits (62), Expect = 1.5
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 491 HSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
SGE + C C K F S L H + H
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.003
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ +C C K F KS L H +H+ K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 30.2 bits (69), Expect = 0.15
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KP C C K + + L+ H H +
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 29.1 bits (66), Expect = 0.37
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP KC CG S+L H + H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 26.0 bits (58), Expect = 5.3
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE +C C K F L H R H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.003
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ YEC+ C+K FI L +H H +
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 31.4 bits (72), Expect = 0.053
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C+ C KT+ G L H +H+GE
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGE 38
Score = 28.3 bits (64), Expect = 0.81
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
S KP++C+ C + L H + H+
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHT 36
Score = 27.9 bits (63), Expect = 0.86
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ SG+ Y+C C K F L H R H
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.003
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ ++C C K + + L +H H KP
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.29
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KP+ C C K+Y L H +H+GE
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.71
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGE-FYQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE ++C C K + V L H R H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 27.5 bits (62), Expect = 1.4
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KPFKC CG ++ L H + H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.003
Identities = 11/42 (26%), Positives = 13/42 (30%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ Y+C C K F S L H H KP
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.24
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C C K +T L H +H+GE
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 1.1
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +G+ Y+C+ C K F + L H H
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 27.5 bits (62), Expect = 1.2
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP+KC CG ++ S L H H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.004
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
R ++C C K FI + L +H H KP
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.23
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
+P+ C C K++ L+ H +H+GE
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.8
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE ++C+ C K F S L H R H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 26.3 bits (59), Expect = 3.5
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S +P KC CG +++ L H + H
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.004
Identities = 12/42 (28%), Positives = 14/42 (33%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ Y+C C K F S L H H VKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 30.6 bits (70), Expect = 0.12
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C C K +T L H +H+G
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 28.3 bits (64), Expect = 0.82
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP+KC CG ++ S L H + H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 27.9 bits (63), Expect = 0.99
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y+C+ C K F + L NH R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.9 bits (81), Expect = 0.004
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KP+ C+ C ++ SL H H
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSHERT 38
Score = 33.3 bits (77), Expect = 0.012
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ ++C+ C F +L +H SH P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 32.6 bits (75), Expect = 0.020
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE +QC C F S +L H R H
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 32.2 bits (74), Expect = 0.025
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
S KPF+C+ CG S + L HL++H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHE 36
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.004
Identities = 11/41 (26%), Positives = 13/41 (31%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ Y+C C K F S L H H KP
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 30.5 bits (70), Expect = 0.11
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C C K +T L H+ +H+GE
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.78
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP+KC CG ++ S L H + H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 28.2 bits (64), Expect = 0.82
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ SGE Y+C+ C K F + L NH R H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 34.4 bits (80), Expect = 0.004
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ ++C C F S+L+ H H+ KP
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 33.7 bits (78), Expect = 0.007
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S M K +KC C S+AS LR H H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 32.5 bits (75), Expect = 0.022
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
K + C C ++ SL H ++H GE
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.25
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ GE ++C C F + +LR H H
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 25.2 bits (56), Expect = 9.6
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 422 CSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSG 454
C C+ FS + + H H ++P P SG
Sbjct: 15 CRECDMCFSQASSLRLHQ-NVHVGEKPSGPSSG 46
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.004
Identities = 11/41 (26%), Positives = 14/41 (34%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ Y C C K F K+ L +H H KP
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.069
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C C K + + +L H +H+GE
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 1.1
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y+C C K F L H R H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 26.3 bits (59), Expect = 3.3
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP++C CG ++ + L H + H
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.004
Identities = 11/42 (26%), Positives = 13/42 (30%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ Y+C C K F S L H H KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 29.0 bits (66), Expect = 0.36
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C C K +T L H +H+G
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 27.5 bits (62), Expect = 1.3
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP+KC CG ++ S L H + H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 27.5 bits (62), Expect = 1.4
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y+C+ C K F + L H R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.005
Identities = 9/42 (21%), Positives = 13/42 (30%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ ++C+ C K F L H H KP
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.14
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KP+ C+ C K + L +H +H+GE
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.45
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGE-FYQCDVCFKEFRSSVTLRNHTRRH 518
+ SGE ++C C K FR ++ L +H R H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 28.2 bits (64), Expect = 0.84
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KPFKC+ CG + L +HL+ H
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 35.9 bits (82), Expect = 0.005
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 512 RNHTRRHDNFSCDECSVECQDLNALRMHTLREHGYKILA----CEKCDVKFTHKALLAEH 567
+ + + + C C+ + DLN H EH +L C +C+ L+EH
Sbjct: 10 QQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEH 69
Query: 568 INTKHNTDVTLKCQL 582
H + K +
Sbjct: 70 NLKYHPGEENFKLTM 84
Score = 32.1 bits (72), Expect = 0.13
Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Query: 332 FLCELCDKTSIHYTYLCLHKKLKHSNLTYGGESPVCEPCNLTFKNEWQYLVHNRAVHELP 391
+ C+ C + H +H N+ S VC CN K HN H P
Sbjct: 19 YECKYCTFQTPDLNMFTFHVDSEHPNVVLN-SSYVCVECNFLTKRYDALSEHNLKYH--P 75
Query: 392 PEPNSGAGSVLQNN 405
E N V +NN
Sbjct: 76 GEENFKLTMVKRNN 89
Score = 30.1 bits (67), Expect = 0.52
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVS-HMSVK---PFKCEICGHYLSRASRLRA 263
+ + + YEC+ C + + + H S H +V + C C R L
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 264 HLKAHSVVASNNKVQNCKK 282
H + N K+ K+
Sbjct: 69 HNLKYHPGEENFKLTMVKR 87
Score = 29.0 bits (64), Expect = 1.6
Identities = 7/57 (12%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 534 NALRMHTLREHGYKILACEKCDVKFTHKALLAEHINTKH---NTDVTLKCQLCNVVV 587
+ + + C+ C + + H++++H + + C CN +
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLT 60
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 39.1 bits (90), Expect = 0.005
Identities = 9/54 (16%), Positives = 17/54 (31%)
Query: 220 CEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHSVVAS 273
E + S ++C +C L L AH+ +H + +
Sbjct: 155 AEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGN 208
Score = 37.1 bits (85), Expect = 0.019
Identities = 25/134 (18%), Positives = 33/134 (24%), Gaps = 4/134 (2%)
Query: 389 ELPPEPNSGAGSVLQNNPYPPLRKAKQHVKSVTCSVCEKAFSSKENCKAHYTRQH---GN 445
ELP + N + N L K +K + KA T N
Sbjct: 70 ELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQVTYSDTGINN 129
Query: 446 KEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQCDVCFKE 504
M E S + + + S YQC VC
Sbjct: 130 ANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAV 189
Query: 505 FRSSVTLRNHTRRH 518
S + L H H
Sbjct: 190 LFSPLDLDAHVASH 203
Score = 32.9 bits (74), Expect = 0.41
Identities = 7/46 (15%), Positives = 12/46 (26%)
Query: 195 NKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSH 240
+ + Y+C +C + L H SH
Sbjct: 158 TSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 30.2 bits (67), Expect = 2.2
Identities = 14/137 (10%), Positives = 29/137 (21%), Gaps = 10/137 (7%)
Query: 11 AETLLSGEHSALSIDQVERSDDFKPPSSTLPRAQPKRLGDDDILLRKRPHKKKKARLLKE 70
+ + D V + K + + Q K K +
Sbjct: 76 NDEGTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKD---------TDKSKAQVTYSDTG 126
Query: 71 EVPVVMVRQAMVTCHTAVHQATPWQEVPGSIPSQAMNPT-MLTTTRVGNISLKIPRCEEC 129
+ ++ + P S ++ S +C C
Sbjct: 127 INNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVC 186
Query: 130 DINFPSKMRHTFHLQHH 146
S + H+ H
Sbjct: 187 SAVLFSPLDLDAHVASH 203
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.005
Identities = 11/42 (26%), Positives = 13/42 (30%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ Y+C C K F S L H H KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.31
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C C K +T L H +H+GE
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 1.2
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP+KC CG ++ S L H H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 27.5 bits (62), Expect = 1.4
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y+C+ C K F + L H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.006
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ Y+C C K F S L H + H KP
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.28
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C C K + L H +H+GE
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.57
Identities = 12/33 (36%), Positives = 13/33 (39%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP+KC CG R S L H H
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 28.2 bits (64), Expect = 0.75
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGE-FYQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y+C C K FR + L H H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.006
Identities = 10/41 (24%), Positives = 13/41 (31%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
R ++C C K F +S L H H K
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 31.0 bits (71), Expect = 0.069
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
S +PFKC CG R S L HL+ HS
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHS 36
Score = 31.0 bits (71), Expect = 0.083
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
+P+ C C K + L H +HS E
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSRE 38
Score = 28.7 bits (65), Expect = 0.55
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ SGE ++C+ C K F L H R H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 33.7 bits (78), Expect = 0.007
Identities = 10/41 (24%), Positives = 13/41 (31%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
R + C C K F+ S +H H KP
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 31.4 bits (72), Expect = 0.058
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
+ + C C K + + + H +H+GE
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGE 38
Score = 29.8 bits (68), Expect = 0.21
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S + +C CG + +AS H + H
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 29.0 bits (66), Expect = 0.38
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ GE ++C C K F + H R H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.007
Identities = 11/42 (26%), Positives = 13/42 (30%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ Y+C C K F S L H H KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.19
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C C K +T L+ H +H+GE
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.84
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP+KC CG ++ S L H H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 26.7 bits (60), Expect = 2.5
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y+C+ C K F + L H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 33.6 bits (78), Expect = 0.007
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ YEC+ C K F + L +H H KP
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.25
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
KPY C+ C K ++ L+ H +H+GE
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 3.7
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S KP++C+ CG S+ + L H + H
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 25.9 bits (58), Expect = 4.3
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y+C C K F + L H R H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 33.7 bits (78), Expect = 0.008
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ + C+ C K F S L+ H HM K
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 31.4 bits (72), Expect = 0.060
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
K +TC+ C K + +L H +H GE
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGE 38
Score = 31.0 bits (71), Expect = 0.085
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 487 HYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
SGE + CD C K F LR H R H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 27.9 bits (63), Expect = 0.97
Identities = 10/34 (29%), Positives = 12/34 (35%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
S K C+ CG S LR H + H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHM 36
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 33.3 bits (77), Expect = 0.009
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C+ C K ++ +GSL+ H +H+G
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGS 37
Score = 32.9 bits (76), Expect = 0.015
Identities = 10/39 (25%), Positives = 13/39 (33%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPF 246
+ Y C+ C K F K +L H H P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 29.8 bits (68), Expect = 0.19
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S S KP++C+ CG S+ L H++ H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 28.7 bits (65), Expect = 0.53
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 487 HYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
GE Y+CD C K F +L H R H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 33.2 bits (77), Expect = 0.010
Identities = 10/41 (24%), Positives = 11/41 (26%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
YEC C K F K L H +H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 29.8 bits (68), Expect = 0.23
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
PY C C K ++ + L++H HSG+
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTHSGQ 38
Score = 27.8 bits (63), Expect = 0.83
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
S P++C CG SR +L +H K HS
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHS 36
Score = 25.9 bits (58), Expect = 4.4
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE Y+C C K F L +H + H
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 33.7 bits (78), Expect = 0.010
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHS-VSHMSVKPFKC 248
+ YEC C K FI ++L H H KP
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 27.5 bits (62), Expect = 1.6
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 467 KPYTCEICSKTYTVEGSLLTHY-DMHSGEF-YQC 498
KPY C C K + SL+ H+ H+GE
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 26.8 bits (60), Expect = 2.2
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRR 517
+ +G+ Y+C C K F + +L H R
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRY 34
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 33.3 bits (77), Expect = 0.011
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ + ++C C + F KS L +H H KP
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 31.4 bits (72), Expect = 0.063
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
K + C C + +T++ L H +H+GE
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGE 38
Score = 30.2 bits (69), Expect = 0.15
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
S S K +C CG + S L H + H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 27.9 bits (63), Expect = 1.0
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ S +QC C + F L H R H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 33.3 bits (76), Expect = 0.012
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
S PFKC C ++ + L H + H+
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 30.2 bits (68), Expect = 0.13
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
P+ C C + +T L+ H H+ +
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHERTHARK 38
Score = 28.7 bits (64), Expect = 0.44
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 486 THYDMHSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
+ +GE ++C C + F L H R H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 25.2 bits (55), Expect = 8.3
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSH 240
++C C + F ++ L +H +H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 32.9 bits (76), Expect = 0.015
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 218 YECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
YEC C K F K L H +H
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 29.8 bits (68), Expect = 0.17
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEF-YQC 498
PY C C K + + L++H H+GE
Sbjct: 9 NPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 25.9 bits (58), Expect = 3.9
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 244 KPFKCEICGHYLSRASRLRAHLKAHS 269
P++C CG +R +L +H + H+
Sbjct: 9 NPYECSECGKAFNRKDQLISHQRTHA 34
Score = 25.6 bits (57), Expect = 5.6
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 491 HSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
SGE Y+C C K F L +H R H
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTH 33
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 34.1 bits (77), Expect = 0.021
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 1/78 (1%)
Query: 440 TRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSK-TYTVEGSLLTHYDMHSGEFYQC 498
+ + + P +++ +C C L H + E + C
Sbjct: 6 SGRIRKEPPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTC 65
Query: 499 DVCFKEFRSSVTLRNHTR 516
C K+ RS ++ H
Sbjct: 66 HHCGKQLRSLAGMKYHVM 83
Score = 32.9 bits (74), Expect = 0.058
Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
Query: 174 SLETHLSFIHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTL 233
SLE V + C C K L HM + + C C K+ + + +
Sbjct: 20 SLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQ-EMFTCHHCGKQLRSLAGM 78
Query: 234 KEHSVSHMSVKPFKCE 249
K H +++ + P
Sbjct: 79 KYHVMANHNSLPSGPS 94
Score = 30.2 bits (67), Expect = 0.55
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Query: 511 LRNHTRRHDNFSCDECS-VECQDLNALRMHTLREHGYKILACEKCDVKFTHKALLAEHIN 569
+ SC C V + + L+ H + ++ C C + A + H+
Sbjct: 25 WYLEIVDKGSVSCPTCQAVGRKTIEGLKKH-MENCKQEMFTCHHCGKQLRSLAGMKYHVM 83
Query: 570 TKHNTDVTLK 579
HN+ +
Sbjct: 84 ANHNSLPSGP 93
Score = 27.1 bits (59), Expect = 5.1
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 414 KQHVKS-----VTCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSG 454
K+H+++ TC C K S K H H + P P SG
Sbjct: 52 KKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSL-PSGPSSG 96
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 34.6 bits (78), Expect = 0.023
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 12/90 (13%)
Query: 411 RKAKQHVKSVTCSVCEKAFSSKENCKAHY------------TRQHGNKEPKEPKSGEGLP 458
R+ C VC S+ AHY + ++ K + P
Sbjct: 24 RENSHIFSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP 83
Query: 459 ALEQLLKMKPYTCEICSKTYTVEGSLLTHY 488
A + + C +C+ T++ +HY
Sbjct: 84 AEISDGEDRSKCCPVCNMTFSSPVVAESHY 113
Score = 33.4 bits (75), Expect = 0.060
Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 7/87 (8%)
Query: 367 CEPCNLTFKNEWQYLVH------NRAVHELPPEPNSGAGSVLQNNPYPPLRKAKQHVKSV 420
C+ C+ +E Q L H V + P + +S
Sbjct: 35 CKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSK 94
Query: 421 TCSVCEKAFSSKENCKAHYT-RQHGNK 446
C VC FSS ++HY + H
Sbjct: 95 CCPVCNMTFSSPVVAESHYIGKTHIKN 121
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 31.9 bits (73), Expect = 0.030
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY+C C +T++ L+ H MH+ +
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMHTVK 36
Score = 28.8 bits (65), Expect = 0.44
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 237 SVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
S KP+ C C S +RL H K H+
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 26.5 bits (59), Expect = 2.6
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 218 YECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
Y C CK+ F + + L +H H
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 25.0 bits (55), Expect = 8.7
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 491 HSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
SGE Y C C + F + L H + H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMH 33
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 33.4 bits (75), Expect = 0.034
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 185 QDNQLKCTICNKENFKNQLSLSIHMRY-HENVREYECEICKKKFINKSTLKEHSVSHMSV 243
+ + C CN K + L HM + +C+ C+K+F +K+ L H+++ S
Sbjct: 21 ERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSA 80
Query: 244 KP 245
KP
Sbjct: 81 KP 82
Score = 28.4 bits (62), Expect = 2.2
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 512 RNHTRRHDNFSCDECS-VECQDLNALRMHTLREHGYK-ILACEKCDVKFTHKALLAEHIN 569
+ C C+ V + L L+ H + L C+ C +F KA L H
Sbjct: 16 QRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
Query: 570 TKHNTDVTLK 579
+H+ +
Sbjct: 76 AEHSAKPSDA 85
Score = 27.6 bits (60), Expect = 4.4
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 462 QLLKMKPYTCEICS--KTYTVEGSLLTHYDM--HSGEFYQCDVCFKEFRSSVTLRNHTR 516
+ + C C+ T+ G L H ++ + +C C K+F+S L HT
Sbjct: 18 AIHERGEAVCPTCNVVTRKTLVG-LKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 31.7 bits (71), Expect = 0.034
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 466 MKPYTCEICSKTYTVEGSLLTHYDMHSG 493
M+PY+C +C K ++++ + THY +H+G
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 31.8 bits (73), Expect = 0.040
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
+ Y C+ C K++ +GSL H +H+G
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTGS 36
Score = 28.7 bits (65), Expect = 0.47
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 218 YECEICKKKFINKSTLKEHSVSHMSVKPF 246
YEC+ C K F K +L H H P
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 27.2 bits (61), Expect = 1.8
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 491 HSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
SG+ Y+C C K FR +L H R H
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 24.8 bits (55), Expect = 9.9
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 244 KPFKCEICGHYLSRASRLRAHLKAH 268
+ ++C+ CG + L H + H
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIH 33
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 30.1 bits (67), Expect = 0.11
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 466 MKPYTCEICSKTYTVEGSLLTHYDMHSGE 494
MKPY C C + + G+L H +H+GE
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGE 29
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 29.9 bits (68), Expect = 0.17
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 235 EHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
S K + C CG +R L H K H+
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHT 36
Score = 29.5 bits (67), Expect = 0.25
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
K Y C C K +T L H +H+ +
Sbjct: 11 KSYNCNECGKAFTRIFHLTRHQKIHTRK 38
Score = 27.9 bits (63), Expect = 0.99
Identities = 8/41 (19%), Positives = 10/41 (24%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ + Y C C K F L H H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 29.9 bits (66), Expect = 0.24
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 237 SVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
S KP+ C +CG R R+ H+++H
Sbjct: 2 SSGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
Score = 28.3 bits (62), Expect = 0.78
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 212 HENVREYECEICKKKFINKSTLKEHSVSH 240
+ Y C +C +F K + H SH
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 28.0 bits (61), Expect = 1.1
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 418 KSVTCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSG 454
K +C VC F K+ H G+ P SG
Sbjct: 9 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG 45
Score = 25.3 bits (54), Expect = 8.4
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEFYQCD 499
KPY+C +C + + + H H G +
Sbjct: 9 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSG 41
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.26
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 98 PGSIPSQAMNPTM 110
S P+ A+ TM
Sbjct: 34 DDSAPALAIKATM 46
Score = 28.8 bits (63), Expect = 2.9
Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 25/47 (53%)
Query: 414 KQHVKSVTCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPAL 460
KQ +K + S+ K ++ S PAL
Sbjct: 19 KQALKKLQASL--KLYA--------------------DDSA---PAL 40
>3iz5_B 60S ribosomal protein L2 (L2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_B 2zkr_a
Length = 261
Score = 31.7 bits (71), Expect = 0.35
Identities = 2/84 (2%), Positives = 5/84 (5%), Gaps = 2/84 (2%)
Query: 353 LKHSNLTYGGESPVCEPCNLTFKNEWQY--LVHNRAVHELPPEPNSGAGSVLQNNPYPPL 410
E A + +
Sbjct: 21 HHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFRHPFRYKHQKELFVAAE 80
Query: 411 RKAKQHVKSVTCSVCEKAFSSKEN 434
+
Sbjct: 81 GMYTGQFVYCGRRATLSIGNVLPI 104
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 28.6 bits (63), Expect = 0.38
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KP C +C K +T SL+ H H+GE
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 27.0 bits (59), Expect = 1.4
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 244 KPFKCEICGHYLSRASRLRAHLKAHS 269
KP +C +CG ++AS L AH++ H+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHT 26
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 28.6 bits (63), Expect = 0.42
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 216 REYECEICKKKFINKSTLKEHSVSH 240
+ + C++C KKF +K TLK H + H
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLH 32
Score = 27.5 bits (60), Expect = 1.0
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 491 HSGEFYQCDVCFKEFRSSVTLRNHTRRH 518
SG+ + CD+C K+F+S TL++H H
Sbjct: 5 SSGKTHLCDMCGKKFKSKGTLKSHKLLH 32
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 28.6 bits (63), Expect = 0.50
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C CS ++ +L H H+GE
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGE 35
Score = 27.1 bits (59), Expect = 1.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 244 KPFKCEICGHYLSRASRLRAHLKAHS 269
KP+KC C + + + L HL+ H+
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHT 33
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 32.5 bits (73), Expect = 0.52
Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 7/70 (10%)
Query: 382 VHNRAVHELPPEPNSGAGSVLQNNPYPPLRKAK-------QHVKSVTCSVCEKAFSSKEN 434
V+N P +S A P + + + S C+VC FS+
Sbjct: 72 VNNDGDIITRPTSDSIAAVANATKPAAVVSDPQSMKVTPIVNPSSYVCNVCNARFSTMSA 131
Query: 435 CKAHYTRQHG 444
H H
Sbjct: 132 LSEHLRSDHR 141
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 28.2 bits (62), Expect = 0.67
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 496 YQCDVCFKEFRSSVTLRNHTR 516
Y C +C K+F SS+ LR+H R
Sbjct: 8 YVCALCLKKFVSSIRLRSHIR 28
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.9 bits (61), Expect = 0.91
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 239 SHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
S S KPFKC +C + S L+AH+ HS
Sbjct: 3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHS 33
Score = 26.0 bits (56), Expect = 4.0
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 418 KSVTCSVCEKAFSSKENCKAHYTRQHGNK 446
K CS+CE A SK N KAH R K
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 27.3 bits (61), Expect = 1.1
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 465 KMKPYTCEI--CSKTYTVEGSLLTHYDMHSGE 494
K K + C I C K Y L H H+GE
Sbjct: 5 KKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE 36
Score = 25.4 bits (56), Expect = 7.2
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 244 KPFKCEI--CGHYLSRASRLRAHLKAHS 269
K C I CG + S LRAHL+ H+
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHT 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 31.1 bits (71), Expect = 1.2
Identities = 13/81 (16%), Positives = 22/81 (27%), Gaps = 8/81 (9%)
Query: 173 HSLETHLSFIHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKST 232
+L+ + ++ N CT + F N ++ + H E Y C
Sbjct: 605 GPAFRNLTELDMRFNPFDCTCESIAWFVNWINET-HTNIPELSSHYLCN-------TPPH 656
Query: 233 LKEHSVSHMSVKPFKCEICGH 253
V K H
Sbjct: 657 YHGFPVRLFDTSSCKDSAHHH 677
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.5 bits (60), Expect = 1.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 466 MKPYTCEICSKTYTVEGSLLTHYDMHSGE 494
K +TCE C+K + + SL H +H+ E
Sbjct: 7 GKIFTCEYCNKVFKFKHSLQAHLRIHTNE 35
>1twf_C B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide;
transcription, mRNA, multiprotein complex; HET: UTP;
2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.1
d.181.1.1 PDB: 1i3q_C 1i6h_C 1k83_C* 1nik_C 1nt9_C
1pqv_C 1r5u_C 1r9s_C* 1r9t_C* 1sfo_C* 1twa_C* 1twc_C*
1i50_C* 1twg_C* 1twh_C* 1wcm_C 1y1v_C 1y1w_C 1y1y_C
1y77_C* ...
Length = 318
Score = 30.7 bits (68), Expect = 1.4
Identities = 27/188 (14%), Positives = 54/188 (28%), Gaps = 6/188 (3%)
Query: 66 RLLKEEVPVVMVRQAMVTCHTAVHQATPWQEVPGSIPSQAMNPTMLTTTRVGNISLKIPR 125
R++ E+P + + V +T V G IP Q+M+ L +R
Sbjct: 35 RVMIAEIPTLAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDIEQLEYSRD---CFCEDH 91
Query: 126 CEECDINFPSKMRHTFHLQHHLEDPDLPVNFMHECRECGSQFADILKH--SLETHLSFIH 183
C++C + + ++ DL + R G + L L
Sbjct: 92 CDKCSVVLTLQAFGESESTTNVYSKDLVIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQ 151
Query: 184 VQDNQLKCTIC-NKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMS 242
KE+ K + +I Y + + ++ K + + +
Sbjct: 152 ELKLTCVAKKGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWPQSKNCEYED 211
Query: 243 VKPFKCEI 250
Sbjct: 212 PPNEGDPF 219
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 26.5 bits (59), Expect = 2.0
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
+ + CE+C++ + + L HY H+ E
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 26.5 bits (59), Expect = 2.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 216 REYECEICKKKFINKSTLKEHSVSHMSVK 244
R + CE+C + F + LK H SH + K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.1 bits (58), Expect = 2.8
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 244 KPFKCEICGHYLSRASRLRAHLKAHS 269
+ F CE+C +R L+ H ++H+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHT 26
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 27.1 bits (59), Expect = 2.3
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 239 SHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
S K FKC C S + L H + H+
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 28.9 bits (64), Expect = 2.4
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 134 PSKMRHTFHLQHHLEDPDLPVNFMHECRECGSQFADILKHSLETHL 179
P + DPDLP +H C C F D +L+TH
Sbjct: 27 PQGSARPQPDPNAEFDPDLPGGGLHRCLACARYFID--STNLKTHF 70
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 27.6 bits (61), Expect = 2.5
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 533 LNALRMHTLREHGYKILACEKCDVKFTHKALLAEHINTKHNTDVTLKCQLCNVVVLIEE 591
+ H E ++ C+ CD++ + L EH + + T C C VL+++
Sbjct: 2 SSGSSGHEETECPLRLAVCQHCDLELSILK-LKEHED--YCGARTELCGNCGRNVLVKD 57
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 26.6 bits (59), Expect = 2.6
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 495 FYQCDVCFKEFRSSVTLRNHTRRH 518
Y C C +EFRS+ L H H
Sbjct: 6 SYTCSFCKREFRSAQALGGHMNVH 29
Score = 25.9 bits (57), Expect = 4.1
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 216 REYECEICKKKFINKSTLKEHSVSH 240
R Y C CK++F + L H H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 26.7 bits (58), Expect = 2.6
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 465 KMKPYTCEICSKTYTVEGSLLTHYDMHSGE 494
+ K + C C + + SL+ H +H G+
Sbjct: 9 REKSHQCRECGEIFFQYVSLIEHQVLHMGQ 38
Score = 25.9 bits (56), Expect = 6.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 216 REYECEICKKKFINKSTLKEHSVSHMSVK 244
+ ++C C + F +L EH V HM K
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 26.2 bits (57), Expect = 2.8
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 496 YQCDVCFKEFRSSVTLRNHTRRHD 519
Y C+ C K F S L NH R HD
Sbjct: 3 YVCERCGKRFVQSSQLANHIRHHD 26
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 26.3 bits (57), Expect = 3.8
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 467 KPYTCEICSKTYTVEGSLLTHY 488
KPY C+IC K Y L HY
Sbjct: 6 KPYACDICGKRYKNRPGLSYHY 27
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding
domain, PDI-like protein, structural genomics; NMR
{Arabidopsis thaliana} SCOP: g.49.1.3
Length = 89
Score = 27.6 bits (61), Expect = 3.8
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 125 RCEECD-------INFPSKMRHTFHLQHHLEDPDLPVNFMHECRECGSQ 166
R +E + ++P K++H H +H LE L ++ C +C +
Sbjct: 11 RLKEIEAKYDEIAKDWPKKVKHVLHEEHELE---LTRVQVYTCDKCEEE 56
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 26.6 bits (58), Expect = 4.2
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 9/58 (15%)
Query: 524 DECSVECQDLNALRMHTLREH-------GYKILACE--KCDVKFTHKALLAEHINTKH 572
EC L L+ H L++H + LAC CD A + HIN +H
Sbjct: 7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH 64
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 25.6 bits (55), Expect = 5.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 418 KSVTCSVCEKAFSSKENCKAHYTRQH 443
+S +C VCEK+FS K+H H
Sbjct: 8 RSYSCPVCEKSFSEDRLIKSHIKTNH 33
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 28.2 bits (62), Expect = 5.8
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 205 LSIHMRYHENVREYECEICKKKFINKSTLKEH 236
+IH + + E ++ N L+
Sbjct: 196 ETIHRNLARGEKRLQREKSEQVLDNPEDLRGP 227
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 28.5 bits (63), Expect = 5.9
Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 12/107 (11%)
Query: 211 YHENVREYECEICKKKFINKSTLKEHSVSHM---SVKPFKCEICGHYLSRASRLRAHLKA 267
++ REY+ I ++T+K ++ FK I H+ + + A +
Sbjct: 223 GTQSSREYD------GNIRQATVK-WAMLEQIRNPSPCFKEVIHKHFYLKRVEIMAQCEE 275
Query: 268 --HSVVASNNKVQNCKKCFKCCQVFPSNEENLRKHFEKVHFDLEFDE 312
+ ++ + + + LR+ K+ D
Sbjct: 276 WIADIQQYSSDKRVGRTMSHHAAALKRHTAQLREELLKLPCPEGLDP 322
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 26.6 bits (59), Expect = 6.5
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 7/38 (18%)
Query: 416 HVKSVTCSVCEKAFS----SKEN---CKAHYTRQHGNK 446
HV C C + SK+ C++ Y Q G+
Sbjct: 39 HVSCFKCQTCSVILTGEYISKDGVPYCESDYHAQFGSG 76
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 24.7 bits (53), Expect = 8.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 218 YECEICKKKFINKSTLKEHSVSH 240
Y+C +C++ F+ KS L H H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.134 0.422
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,022,333
Number of extensions: 531301
Number of successful extensions: 3202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2746
Number of HSP's successfully gapped: 852
Length of query: 597
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 498
Effective length of database: 3,937,614
Effective search space: 1960931772
Effective search space used: 1960931772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.5 bits)