RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12199
(597 letters)
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 40.4 bits (94), Expect = 2e-05
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 218 YECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAH 268
Y C+ C K F +KS H H+ ++P+ C +CG L H+K H
Sbjct: 4 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 36.6 bits (84), Expect = 3e-04
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSG-EFYQCDVCFKEFRSSVTLRNHTRRH 518
K Y C+ C K++T + H MH G Y C VC K+F+ L H + H
Sbjct: 2 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 34.7 bits (79), Expect = 0.002
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 194 CNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSH 240
C K +F ++ HM H +R Y C +C KKF K L H H
Sbjct: 8 CGK-SFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 25.4 bits (55), Expect = 3.4
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 10/62 (16%)
Query: 244 KPFKCEICGHYLSRASRLRAHLKAHSVVASNNKVQNCKKCFKCCQVFPSNEENLRKHFEK 303
K + C+ CG + S+ H+ H + C C K + +L H K
Sbjct: 2 KLYPCQ-CGKSFTHKSQRDRHMSMHL----GLRPYGCGVCGKKF----KMKHHLVGH-MK 51
Query: 304 VH 305
+H
Sbjct: 52 IH 53
Score = 24.6 bits (53), Expect = 7.5
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 521 FSCDECSVECQDLNALRMHTLREHGYKILACEKCDVKFTHKALLAEHINT 570
+ C +C + H G + C C KF K L H+
Sbjct: 4 YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI 52
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 38.4 bits (90), Expect = 6e-05
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 218 YECEICKKKFINKSTLKEHSVS-HMSVKPFKCEI 250
Y C+ C K F L H H S +P KC++
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 33.8 bits (78), Expect = 0.002
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 467 KPYTCEICSKTYTVEGSLLTHY-DMHSGEF-YQCDV 500
KPY C+ C K ++ L H +H+ E ++C V
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 29.6 bits (67), Expect = 0.068
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 20/56 (35%)
Query: 418 KSVTCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEI 473
K C C K FS ++ H + H + E +P+ C++
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIKQVH---------TSE-----------RPHKCQV 39
Score = 29.2 bits (66), Expect = 0.089
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 244 KPFKCEICGHYLSRASRLRAHLK 266
KP+ C+ CG SR L H+K
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIK 26
Score = 26.9 bits (60), Expect = 0.72
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 496 YQCDVCFKEFRSSVTLRNHTRRH 518
Y C C K F L H ++
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQV 28
Score = 25.7 bits (57), Expect = 1.7
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 158 HECRECGSQFADILKHSLETHLSFIHVQDNQLKCTI 193
+ C+ CG F+ L H+ +H + KC +
Sbjct: 6 YICQSCGKGFSR--PDHLNGHIKQVHTSERPHKCQV 39
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 36.6 bits (85), Expect = 2e-04
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSHMSV 243
R ++ ++C C + F L H HM V
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 33.6 bits (77), Expect = 0.003
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHSVV 271
+ +KPF+C C SR+ L H K H +V
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 29.7 bits (67), Expect = 0.067
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 487 HYDMHSGE-FYQCDVCFKEFRSSVTLRNHTRRH 518
+G +QC C + F S L H +RH
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 24.7 bits (54), Expect = 4.2
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMH 491
KP+ C C ++++ L H H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRH 34
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 33.7 bits (78), Expect = 0.002
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C C K ++ L+ H +H+GE
Sbjct: 6 KPYGCVECGKAFSRSSILVQHQRVHTGE 33
Score = 32.6 bits (75), Expect = 0.005
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 240 HMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
H KP+ C CG SR+S L H + H+
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVHT 31
Score = 31.4 bits (72), Expect = 0.016
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 490 MHSGE-FYQCDVCFKEFRSSVTLRNHTRRH 518
+HSGE Y C C K F S L H R H
Sbjct: 1 IHSGEKPYGCVECGKAFSRSSILVQHQRVH 30
Score = 29.9 bits (68), Expect = 0.058
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 212 HENVREYECEICKKKFINKSTLKEHSVSH 240
H + Y C C K F S L +H H
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVH 30
Score = 24.1 bits (53), Expect = 5.3
Identities = 10/31 (32%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 182 IHVQDNQLKCTICNKENFKNQLSLSIHMRYH 212
IH + C C K F L H R H
Sbjct: 1 IHSGEKPYGCVECGK-AFSRSSILVQHQRVH 30
Score = 23.7 bits (52), Expect = 9.2
Identities = 8/21 (38%), Positives = 8/21 (38%)
Query: 418 KSVTCSVCEKAFSSKENCKAH 438
K C C KAFS H
Sbjct: 6 KPYGCVECGKAFSRSSILVQH 26
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 33.5 bits (77), Expect = 0.002
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 218 YECE--ICKKKFINKSTLKEHSVSHMSVKPFKCE 249
+ C C K F K LKEH H + + CE
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 35
Score = 25.1 bits (55), Expect = 2.6
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 469 YTCE--ICSKTYTVEGSLLTHYDMHSGEF-YQCD 499
++C C K++ + L H +HS Y C+
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 35
Score = 25.1 bits (55), Expect = 3.1
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 190 KCTICNKENFKNQLSLSIHMRYHENVREYECE 221
C K +F + L HM+ H + R+Y CE
Sbjct: 5 PEPACGK-SFNFKKHLKEHMKLHSDTRDYICE 35
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 32.6 bits (75), Expect = 0.005
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
+ + CE+C++ + + L HY H+ E
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 30.3 bits (69), Expect = 0.035
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 244 KPFKCEICGHYLSRASRLRAHLKAHS 269
+ F CE+C +R L+ H ++H+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHT 26
Score = 29.5 bits (67), Expect = 0.074
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 216 REYECEICKKKFINKSTLKEHSVSH 240
R + CE+C + F + LK H SH
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 28.0 bits (63), Expect = 0.24
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 496 YQCDVCFKEFRSSVTLRNHTRRH 518
+ C+VC + F L+ H R H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH 25
Score = 24.1 bits (53), Expect = 5.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 418 KSVTCSVCEKAFSSKENCKAH 438
+S C VC +AF+ +E+ K H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH 21
Score = 23.7 bits (52), Expect = 8.2
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 190 KCTICNKENFKNQLSLSIHMRYH 212
C +C + F Q L H R H
Sbjct: 4 VCEVCTR-AFARQEHLKRHYRSH 25
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 32.8 bits (75), Expect = 0.006
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 236 HSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
+ +KC+ CG S +S L H + H+
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT 36
Score = 31.3 bits (71), Expect = 0.018
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 208 HMRYHENVREYECEICKKKFINKSTLKEHSVSH 240
R Y+C+ C K F + S L +H +H
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35
Score = 27.4 bits (61), Expect = 0.46
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
+ Y C+ C K+++ L H H+GE
Sbjct: 11 RRYKCDECGKSFSHSSDLSKHRRTHTGE 38
Score = 27.0 bits (60), Expect = 0.60
Identities = 11/33 (33%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 487 HYDMHSGE-FYQCDVCFKEFRSSVTLRNHTRRH 518
Y+CD C K F S L H R H
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 32.3 bits (74), Expect = 0.008
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 240 HMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
H KP+ C C + L H K +
Sbjct: 3 HTGEKPYACSHCDKTFRQKQLLDMHFKRYH 32
Score = 30.8 bits (70), Expect = 0.026
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 491 HSGE-FYQCDVCFKEFRSSVTLRNHTRRHDN 520
H+GE Y C C K FR L H +R+ +
Sbjct: 3 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHD 33
Score = 30.8 bits (70), Expect = 0.028
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 210 RYHENVREYECEICKKKFINKSTLKEHSVSH 240
R H + Y C C K F K L H +
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRY 31
Score = 30.4 bits (69), Expect = 0.031
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGEFY 496
KPY C C KT+ + L H+ + +
Sbjct: 7 KPYACSHCDKTFRQKQLLDMHFKRYHDPNF 36
Score = 26.9 bits (60), Expect = 0.66
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 537 RMHTLREHGYKILACEKCDVKFTHKALLAEHINTKHNTD 575
R HT G K AC CD F K LL H H+ +
Sbjct: 1 RTHT----GEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35
Score = 23.9 bits (52), Expect = 8.5
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 182 IHVQDNQLKCTICNKENFKNQLSLSIHMRYHEN 214
H + C+ C+K F+ + L +H + + +
Sbjct: 2 THTGEKPYACSHCDK-TFRQKQLLDMHFKRYHD 33
Score = 23.5 bits (51), Expect = 9.9
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 418 KSVTCSVCEKAFSSKENCKAHYTRQHG 444
K CS C+K F K+ H+ R H
Sbjct: 7 KPYACSHCDKTFRQKQLLDMHFKRYHD 33
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 31.9 bits (73), Expect = 0.009
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
K + C C K + L H H +
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNK 28
Score = 31.2 bits (71), Expect = 0.017
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 244 KPFKCEICGHYLSRASRLRAHLKAHS 269
K F C C R+ L H+K H
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQ 26
Score = 28.5 bits (64), Expect = 0.18
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 218 YECEICKKKFINKSTLKEHSVSH 240
+ C C K+F+ L +H +H
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTH 25
Score = 27.3 bits (61), Expect = 0.45
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 496 YQCDVCFKEFRSSVTLRNHTRRH 518
+ C C K F S L H + H
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTH 25
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 31.0 bits (71), Expect = 0.016
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSG 493
KP+ C IC + ++ L TH H+G
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 30.3 bits (69), Expect = 0.033
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 244 KPFKCEICGHYLSRASRLRAHLKAHS 269
KPF+C IC SR+ L H++ H+
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHT 27
Score = 29.1 bits (66), Expect = 0.098
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 218 YECEICKKKFINKSTLKEHSVSH 240
++C IC + F L H +H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTH 26
Score = 27.6 bits (62), Expect = 0.31
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 496 YQCDVCFKEFRSSVTLRNHTRRH 518
+QC +C + F S L H R H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTH 26
Score = 24.1 bits (53), Expect = 5.5
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 418 KSVTCSVCEKAFSSKENCKAH 438
K C +C + FS ++ H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTH 22
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 30.7 bits (70), Expect = 0.024
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 240 HMSVKPFKCEICGHYLSRASRLRAHLKAH 268
H KP++C IC +++ ++ H+
Sbjct: 3 HSGEKPYECYICHARFTQSGTMKMHILQK 31
Score = 30.7 bits (70), Expect = 0.024
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 491 HSGEF-YQCDVCFKEFRSSVTLRNHTRRH 518
HSGE Y+C +C F S T++ H +
Sbjct: 3 HSGEKPYECYICHARFTQSGTMKMHILQK 31
Score = 30.7 bits (70), Expect = 0.028
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 210 RYHENVREYECEICKKKFINKSTLKEHSVSH 240
R H + YEC IC +F T+K H +
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQK 31
Score = 29.2 bits (66), Expect = 0.097
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
KPY C IC +T G++ H E
Sbjct: 7 KPYECYICHARFTQSGTMKMHILQKHTE 34
Score = 28.8 bits (65), Expect = 0.13
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 418 KSVTCSVCEKAFSSKENCKAHYTRQHG 444
K C +C F+ K H ++H
Sbjct: 7 KPYECYICHARFTQSGTMKMHILQKHT 33
Score = 28.0 bits (63), Expect = 0.26
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 537 RMHTLREHGYKILACEKCDVKFTHKALLAEHINTKHNTDV 576
R H+ G K C C +FT + HI KH +V
Sbjct: 1 RTHS----GEKPYECYICHARFTQSGTMKMHILQKHTENV 36
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 29.3 bits (66), Expect = 0.074
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 491 HSGE-FYQCDVCFKEFRSSVTLRNHTRRH 518
SG+ + C +C F + H + H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 28.2 bits (63), Expect = 0.24
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 240 HMSVKPFKCEICGHYLSRASRLRAHLKAHS 269
+PF C IC + + HLK H+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 27.0 bits (60), Expect = 0.49
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHSGE 494
+P+ C IC +T + + H +H+
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVHTDT 33
Score = 25.5 bits (56), Expect = 2.3
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 212 HENVREYECEICKKKFINKSTLKEHSVSH 240
R + C IC F K+ H H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 28.8 bits (65), Expect = 0.11
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 467 KPYTC--EICSKTYTVEGSLLTHYDMHSGE 494
KP+ C E C K+Y+ +L TH H+GE
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30
Score = 25.8 bits (57), Expect = 1.4
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 244 KPFKC--EICGHYLSRASRLRAHLKAHS 269
KP KC E C SR L+ HL++H+
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHT 28
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 28.9 bits (65), Expect = 0.14
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 496 YQCDVCFKEFRSSVTLRNHTRRH 518
Y C C +EFRS+ L H H
Sbjct: 6 YTCSFCKREFRSAQALGGHMNVH 28
Score = 25.1 bits (55), Expect = 3.4
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 216 REYECEICKKKFINKSTLKEHSVSH 240
R Y C CK++F + L H H
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMNVH 28
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 28.3 bits (64), Expect = 0.15
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 244 KPFKCEICGHYLSRASRLRAHLKAHS 269
KP+KC CG S+ S L H + H+
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIHT 26
Score = 26.8 bits (60), Expect = 0.55
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 467 KPYTCEICSKTYTVEGSLLTHYDMHS 492
KPY C C K ++ L+ H +H+
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIHT 26
Score = 26.8 bits (60), Expect = 0.65
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 218 YECEICKKKFINKSTLKEHSVSH 240
Y+C C K F S L H H
Sbjct: 3 YKCLECGKAFSQNSGLINHQRIH 25
Score = 26.0 bits (58), Expect = 1.1
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 496 YQCDVCFKEFRSSVTLRNHTRRH 518
Y+C C K F + L NH R H
Sbjct: 3 YKCLECGKAFSQNSGLINHQRIH 25
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 28.1 bits (62), Expect = 0.21
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 244 KPFKCEICGHYLSRASRLRAHLKAHS 269
+PFKC+IC + +S+L HL++H+
Sbjct: 2 RPFKCQICPYASRNSSQLTVHLRSHT 27
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 27.9 bits (62), Expect = 0.25
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 244 KPFKCEICGHYLSRASRLRAHLKAH 268
KPF C+ICG +R+ + H K H
Sbjct: 2 KPFACDICGRKFARSDERKRHTKIH 26
Score = 24.4 bits (53), Expect = 5.0
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 216 REYECEICKKKFINKSTLKEHSVSHM 241
+ + C+IC +KF K H+ H+
Sbjct: 2 KPFACDICGRKFARSDERKRHTKIHL 27
Score = 24.0 bits (52), Expect = 6.7
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 496 YQCDVCFKEFRSSVTLRNHTRRH 518
+ CD+C ++F S + HT+ H
Sbjct: 4 FACDICGRKFARSDERKRHTKIH 26
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 28.1 bits (63), Expect = 0.26
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 467 KPYTC--EICSKTYTVEGSLLTHYDMHSGE 494
+P+ C C K +T L H H+GE
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 25.0 bits (55), Expect = 2.4
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 244 KPFKC--EICGHYLSRASRLRAHLKAHS 269
+PF C CG +R+ L+ H + H+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHT 28
Score = 23.8 bits (52), Expect = 8.5
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 216 REYEC--EICKKKFINKSTLKEHSVSH 240
R + C C K+F L+ H +H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 27.7 bits (62), Expect = 0.26
Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 467 KPYTCEI--CSKTYTVEGSLLTHYDMHSGE 494
KP+ C C K ++++ +L TH +H+G+
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 27.3 bits (60), Expect = 0.39
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 245 PFKCEICGHYLSRASRLRAHLKAHS 269
P KCE+CG SR +L+ H++ H+
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMRCHT 25
>d5ruba2 d.58.9.1 (A:2-137) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Rhodospirillum rubrum [TaxId:
1085]}
Length = 136
Score = 29.7 bits (67), Expect = 0.42
Identities = 8/56 (14%), Positives = 13/56 (23%), Gaps = 9/56 (16%)
Query: 88 VHQATPWQEVPGSIPSQAMNPTMLTTTRVGNI-SLK-IPRCEECDINFPSKMRHTF 141
+ I T +GN + + + D P R F
Sbjct: 87 ALFDRNITDGKAMIA-------SFLTLTMGNNQGMGDVEYAKMHDFYVPEAYRALF 135
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 27.3 bits (60), Expect = 0.49
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 216 REYECEICKKKFINKSTLKEHSVSHMSVKPF 246
++ CEIC K F + L H +SH KP+
Sbjct: 4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY 34
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 27.3 bits (60), Expect = 0.49
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 244 KPFKCEICGHYLSRASRLRAHLKAH 268
KP+ C +CG R R+ H+++H
Sbjct: 2 KPYSCPVCGLRFKRKDRMSYHVRSH 26
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 26.9 bits (60), Expect = 0.60
Identities = 6/28 (21%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 244 KPFKCEI--CGHYLSRASRLRAHLKAHS 269
+P+ C C ++++ L++H+ H+
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
Score = 23.5 bits (51), Expect = 8.4
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 467 KPYTCEI--CSKTYTVEGSLLTHYDMHS 492
+PY C C+K + +L +H H+
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 26.7 bits (58), Expect = 0.65
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 243 VKPFKCEICGHYLSRASRLRAHLKAHS 269
VKP+KC+ C + + +S L HL+ HS
Sbjct: 1 VKPYKCKTCDYAAADSSSLNKHLRIHS 27
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 89
Score = 28.3 bits (63), Expect = 0.75
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 125 RCEECD-------INFPSKMRHTFHLQHHLEDPDLPVNFMHECRECGSQFA 168
R +E + ++P K++H H +H LE + V +C E G+ ++
Sbjct: 11 RLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIWS 61
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 27.3 bits (60), Expect = 0.79
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 490 MHSGEFYQCDVCFKEFRSSVTLRNHTRRH 518
+ C +C K F + LR H +H
Sbjct: 1 LREAGILPCGLCGKVFTDANRLRQHEAQH 29
Score = 26.5 bits (58), Expect = 1.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 246 FKCEICGHYLSRASRLRAHLKAHSV 270
C +CG + A+RLR H H V
Sbjct: 7 LPCGLCGKVFTDANRLRQHEAQHGV 31
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 26.5 bits (59), Expect = 0.83
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 244 KPFKC--EICGHYLSRASRLRAHLKAHS 269
+P+ C C R L H K+H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 25.8 bits (57), Expect = 1.6
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 467 KPYTC--EICSKTYTVEGSLLTHYDMHSGE 494
+PY+C C K + L+ H H +
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 26.1 bits (58), Expect = 1.0
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 467 KPYTC--EICSKTYTVEGSLLTHYDMHSG 493
+PY C E C + ++ L H +H+G
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHTG 29
Score = 26.1 bits (58), Expect = 1.1
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 244 KPFKC--EICGHYLSRASRLRAHLKAHS 269
+P+ C E C SR++ L H++ H+
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHT 28
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 26.8 bits (59), Expect = 1.0
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 230 KSTLKEHSVSHMSVKPFKCEIC--GHYLSRASRLRAHLKAHS 269
+ ++ ++ V M K F+C R +R+H++ H
Sbjct: 4 RGSIDKY-VKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL 44
Score = 24.5 bits (53), Expect = 6.8
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 479 TVEGSLLTHYDMHSGE---FYQCDVCFKEFRSSVTLRNHTRRH 518
T+ + Y + C K F+ +R+H + H
Sbjct: 1 TLPRGSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTH 43
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 27.0 bits (60), Expect = 1.3
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 217 EYECEICKKKFINKSTLKEH 236
+ C C + FI+ + LK H
Sbjct: 15 LHRCLACARYFIDSTNLKTH 34
Score = 25.4 bits (56), Expect = 4.0
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 149 DPDLPVNFMHECRECGSQFADILKHSLETHL 179
DPDLP +H C C F D +L+TH
Sbjct: 7 DPDLPGGGLHRCLACARYFID--STNLKTHF 35
Score = 24.7 bits (54), Expect = 8.2
Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 493 GEFYQCDVCFKEFRSSVTLRNHTR 516
G C C + F S L+ H R
Sbjct: 14 GLHR-CLACARYFIDSTNLKTHFR 36
Score = 24.7 bits (54), Expect = 8.8
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 6/34 (17%)
Query: 367 CEPCNLTFKNEWQYL------VHNRAVHELPPEP 394
C C F + H + + +L EP
Sbjct: 18 CLACARYFIDSTNLKTHFRSKDHKKRLKQLSVEP 51
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase
14 {Human (Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 29.0 bits (63), Expect = 1.9
Identities = 22/193 (11%), Positives = 51/193 (26%), Gaps = 5/193 (2%)
Query: 134 PSKMRHTFHLQHHL--EDPDLPVNFMHECRECGSQFADILKHSLETHLSFIHVQDNQLKC 191
P + H+ E + + EC Q +L+ LE + +
Sbjct: 72 PIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSA 131
Query: 192 TICNKENFKNQLSLSIHMRYHENVREYECE---ICKKKFINKSTLKEHSVSHMSVKPFKC 248
+ K+ + + + ++ E E + K K + +
Sbjct: 132 SAATPSKKKSLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLK 191
Query: 249 EICGHYLSRASRLRAHLKAHSVVASNNKVQNCKKCFKCCQVFPSNEENLRKHFEKVHFDL 308
+++ S + + +++ + E K + V F L
Sbjct: 192 LRLQEEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPL 251
Query: 309 EFDEAHFYDVVLK 321
D L+
Sbjct: 252 MLDMYELCTPELQ 264
>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 31
Score = 25.4 bits (55), Expect = 2.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 552 EKCDVKFTHKALLAEHINTKHN 573
+ CD++FT KA + +H N HN
Sbjct: 8 DGCDLRFTTKANMKKHFNRFHN 29
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 29
Score = 24.8 bits (54), Expect = 2.7
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 467 KPYTCEI--CSKTYTVEGSLLTHYDMHSG 493
KPY C++ C+K YT SL H G
Sbjct: 1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG 29
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 24.3 bits (52), Expect = 4.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 218 YECEICKKKFINKSTLKEHSVSH 240
Y+C +C++ F+ KS L H H
Sbjct: 1 YKCGLCERSFVEKSALSRHQRVH 23
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 24.3 bits (52), Expect = 4.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 497 QCDVCFKEFRSSVTLRNHTRRH 518
+C C K+F S L+ H R+H
Sbjct: 2 ECPTCHKKFLSKYYLKVHNRKH 23
>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 25.1 bits (55), Expect = 5.1
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 209 MRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYL 255
R N ++C +C F + L+ + + F+C C +
Sbjct: 6 ERDSTNRASFKCPVCSSTF---TDLEANQLFDPMTGTFRCTFCHTEV 49
>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane
domain-containing protein 2, MCTP2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 26.3 bits (57), Expect = 5.3
Identities = 6/82 (7%), Positives = 21/82 (25%)
Query: 452 KSGEGLPALEQLLKMKPYTCEICSKTYTVEGSLLTHYDMHSGEFYQCDVCFKEFRSSVTL 511
L A + K P+ ++ + + + + + VT+
Sbjct: 13 LKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTV 72
Query: 512 RNHTRRHDNFSCDECSVECQDL 533
+ + ++ +
Sbjct: 73 FDEDGDKPPDFLGKVAIPLLSI 94
>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus
kodakaraensis [TaxId: 311400]}
Length = 218
Score = 26.8 bits (59), Expect = 6.2
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 246 FKCEICGHYLSRASRLRAHLKAHSV 270
+KCE CG Y+ + L AHL+ H +
Sbjct: 147 YKCEECGKYVDIEN-LEAHLREHGI 170
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 44
Score = 24.3 bits (52), Expect = 6.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 215 VREYECEICKKKFINKSTLKEHSVS 239
++ YEC IC K+F+ + + H S
Sbjct: 3 IKPYECNICAKRFMWRDSFHRHVTS 27
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 23.8 bits (51), Expect = 6.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 216 REYECEICKKKFINKSTLKEHSVSH 240
R + C C K F+ S LK H + H
Sbjct: 1 RVHVCAECGKAFVESSKLKRHQLVH 25
>d1wjpa1 g.37.1.1 (A:1-42) Zinc finger protein 295, ZNF295 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 23.9 bits (51), Expect = 9.0
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 494 EFYQCDVCFKEFRSSVTLRNHTR 516
E YQC +C + S + +H R
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHER 37
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.134 0.422
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,282,473
Number of extensions: 112782
Number of successful extensions: 689
Number of sequences better than 10.0: 1
Number of HSP's gapped: 678
Number of HSP's successfully gapped: 182
Length of query: 597
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 507
Effective length of database: 1,171,896
Effective search space: 594151272
Effective search space used: 594151272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.5 bits)