BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1220
(337 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N2Z|B Chain B, The Structure Of Human Prolylcarboxypeptidase At 2.80
Angstroms Resolution
Length = 446
Score = 244 bits (623), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 165/274 (60%), Gaps = 7/274 (2%)
Query: 33 YETKFFDAKLDHFTYVSNQTFPLKYLINDEFWDEDGGAPVFFYCGNEDAIETFAENLGFL 92
Y +F K+DHF + + +TF +YL+ D++W ++GG+ + FY GNE I F N GF+
Sbjct: 3 YSVLYFQQKVDHFGFNTVKTFNQRYLVADKYWKKNGGS-ILFYTGNEGDIIWFCNNTGFM 61
Query: 93 WESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASR 152
W+ A+ A +V EHRYYG SLPFG S R +LT Q LADF ++I+ L+
Sbjct: 62 WDVAEELKAMLVFAEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLK---- 117
Query: 153 LRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTNDLAPCDIYYKE 212
R + PVIA GGSYGGMLA W R+KYPH+V GALA+SAP++Q DL PC ++ K
Sbjct: 118 -RTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFEDLVPCGVFMKI 176
Query: 213 VTKIYRDVSPKCEENIRNSWTFINTELQTDSGRVEFSREWNLCSSLKTQVDVAIFKRYLS 272
VT +R P C E+I SW IN T SG + +LCS L +Q D+ K ++S
Sbjct: 177 VTTDFRKSGPHCSESIHRSWDAINRLSNTGSGLQWLTGALHLCSPLTSQ-DIQHLKDWIS 235
Query: 273 DMYTTMAMTNYPYPSNFLTPLPGNPVKVDVAIFK 306
+ + +AM +YPY SNFL PLP P+KV K
Sbjct: 236 ETWVNLAMVDYPYASNFLQPLPAWPIKVVCQYLK 269
>pdb|3JYH|A Chain A, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|B Chain B, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|C Chain C, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|D Chain D, Human Dipeptidyl Peptidase Dpp7
pdb|3N0T|A Chain A, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|B Chain B, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|C Chain C, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|D Chain D, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
Length = 469
Score = 210 bits (535), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 114/279 (40%), Positives = 164/279 (58%), Gaps = 17/279 (6%)
Query: 27 STDAYTYETKFFDAKLDHFTY--VSNQTFPLKYLINDEFWDEDGGAPVFFYCGNEDAIET 84
+ D ++ +FF +LDHF + N+TFP ++L++D FW G P+FFY GNE +
Sbjct: 2 AMDDPGFQERFFQQRLDHFNFERFGNKTFPQRFLVSDRFWVR-GEGPIFFYTGNEGDVWA 60
Query: 85 FAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVI 144
FA N F+ E A A +V EHRYYG SLPFG +S LTV Q LADF +++
Sbjct: 61 FANNSAFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTE-LLTVEQALADFAELL 119
Query: 145 QSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTNDLA 204
++L R +GA + P IAFGGSYGGML+ +LR+KYPH+V GALA+SAP+ L
Sbjct: 120 RAL----RRDLGA--QDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVAGLG 173
Query: 205 PCDIYYKEVTKIYRDVSPKCEENIRNSWTFINT---ELQTDSGRVEFSREWNLCSSLKTQ 261
+ ++++VT + SPKC + +R ++ I + D+ R EF C L +
Sbjct: 174 DSNQFFRDVTADFEGQSPKCTQGVREAFRQIKDLFLQGAYDTVRWEF----GTCQPLSDE 229
Query: 262 VDVAIFKRYLSDMYTTMAMTNYPYPSNFLTPLPGNPVKV 300
D+ + + +T +AM +YPYP++FL PLP NPVKV
Sbjct: 230 KDLTQLFMFARNAFTVLAMMDYPYPTDFLGPLPANPVKV 268
>pdb|4EBB|A Chain A, Structure Of Dpp2
pdb|4EBB|B Chain B, Structure Of Dpp2
Length = 472
Score = 204 bits (518), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 159/273 (58%), Gaps = 17/273 (6%)
Query: 33 YETKFFDAKLDHFTY--VSNQTFPLKYLINDEFWDEDGGAPVFFYCGNEDAIETFAENLG 90
++ +FF +LDHF + N+TFP ++L++D FW G P+FFY GNE + FA N
Sbjct: 5 FQERFFQQRLDHFNFERFGNKTFPQRFLVSDRFWVR-GEGPIFFYTGNEGDVWAFANNSA 63
Query: 91 FLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDA 150
F+ E A A +V EHRYYG SLPFG +S LTV Q LADF +++++L
Sbjct: 64 FVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTE-LLTVEQALADFAELLRAL--- 119
Query: 151 SRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTNDLAPCDIYY 210
R +GA + P IAFGGSYGG L+ +LR KYPH+V GALA+SAP+ L + ++
Sbjct: 120 -RRDLGA--QDAPAIAFGGSYGGXLSAYLRXKYPHLVAGALAASAPVLAVAGLGDSNQFF 176
Query: 211 KEVTKIYRDVSPKCEENIRNSWTFINT---ELQTDSGRVEFSREWNLCSSLKTQVDVAIF 267
++VT + SPKC + +R ++ I + D+ R EF C L + D+
Sbjct: 177 RDVTADFEGQSPKCTQGVREAFRQIKDLFLQGAYDTVRWEF----GTCQPLSDEKDLTQL 232
Query: 268 KRYLSDMYTTMAMTNYPYPSNFLTPLPGNPVKV 300
+ + +T +A +YPYP++FL PLP NPVKV
Sbjct: 233 FXFARNAFTVLAXXDYPYPTDFLGPLPANPVKV 265
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 146 SLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTNDLAP 205
+E+A LR F V G SYGG LA +KY ++G + S L+
Sbjct: 82 GVEEAEALR-SKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGG-------LSS 133
Query: 206 CDIYYKEVTKIYRDVSPKCEENIR---NSWTFINTELQ 240
+ KE+ ++ ++ K + I+ +S ++ N E Q
Sbjct: 134 VPLTVKEMNRLIDELPAKYRDAIKKYGSSGSYENPEYQ 171
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 146 SLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTNDLAP 205
+E+A LR F V G SYGG LA +KY ++G + S L+
Sbjct: 82 GVEEAEALR-SKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGG-------LSS 133
Query: 206 CDIYYKEVTKIYRDVSPKCEENIR---NSWTFINTELQ 240
+ KE+ ++ ++ K + I+ +S ++ N E Q
Sbjct: 134 VPLTVKEMNRLIDELPAKYRDAIKKYGSSGSYENPEYQ 171
>pdb|1XRM|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Ala-Phe
pdb|1XRN|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Ala
pdb|1XRO|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Leu
pdb|1XRP|A Chain A, Crystal Structure Of Active Site F1-mutant E213q Soaked
With Peptide Pro-leu-gly-gly
Length = 293
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 146 SLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTNDLAP 205
+E+A LR F V G SYGG LA +KY ++G + S L+
Sbjct: 82 GVEEAEALR-SKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGG-------LSS 133
Query: 206 CDIYYKEVTKIYRDVSPKCEENIR---NSWTFINTELQ 240
+ KE+ ++ ++ K + I+ +S ++ N E Q
Sbjct: 134 VPLTVKEMNRLIDELPAKYRDAIKKYGSSGSYENPEYQ 171
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 146 SLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTNDLAP 205
+E+A LR F V G SYGG LA +KY ++G + S L+
Sbjct: 82 GVEEAEALR-SKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGG-------LSS 133
Query: 206 CDIYYKEVTKIYRDVSPKCEENIR---NSWTFINTELQ 240
+ KE+ ++ ++ K + I+ +S ++ N E Q
Sbjct: 134 VPLTVKEMNRLIDELPAKYRDAIKKYGSSGSYENPEYQ 171
>pdb|1XRQ|A Chain A, Crystal Structure Of Active Site F1-Mutant E245q Soaked
With Peptide Phe-Leu
pdb|1XRR|A Chain A, Crystal Structure Of Active Site F1-mutant E245q Soaked
With Peptide Pro-pro
Length = 293
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 146 SLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTNDLAP 205
+E+A LR F V G SYGG LA +KY ++G + S L+
Sbjct: 82 GVEEAEALR-SKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGG-------LSS 133
Query: 206 CDIYYKEVTKIYRDVSPKCEENIR---NSWTFINTELQ 240
+ KE+ ++ ++ K + I+ +S ++ N E Q
Sbjct: 134 VPLTVKEMNRLIDELPAKYRDAIKKYGSSGSYENPEYQ 171
>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
Length = 408
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%)
Query: 112 GSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSY 171
G +LP+G L++ L Q V +++LEDA R++ G + +I GG
Sbjct: 97 GRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVI 156
Query: 172 GGMLAFWLRLKYPHI 186
G LA R H+
Sbjct: 157 GLELAATARTAGVHV 171
>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase,
Bpha4
pdb|1F3P|A Chain A, Ferredoxin Reductase (Bpha4)-Nadh Complex
pdb|2GQW|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2GR0|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (oxidized
Form, Nad+ Complex)
pdb|2GR1|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Hydroquinone)
pdb|2GR2|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2YVF|A Chain A, Crystal Structure Of Ferredoxin Reductase Bpha4
(Hydroquinone)
pdb|2YVG|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Blue-Semiquinone)
pdb|2YVJ|A Chain A, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
pdb|2YVJ|P Chain P, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
Length = 408
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%)
Query: 112 GSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSY 171
G +LP+G L++ L Q V +++LEDA R++ G + +I GG
Sbjct: 97 GRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVI 156
Query: 172 GGMLAFWLRLKYPHI 186
G LA R H+
Sbjct: 157 GLELAATARTAGVHV 171
>pdb|1XQW|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Phe-Leu
pdb|1XQX|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pck
pdb|1XQY|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pro-Leu-
Gly-Gly
Length = 293
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 146 SLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTNDLAP 205
+E+A LR F V G +YGG LA +KY ++G + S L+
Sbjct: 82 GVEEAEALR-SKLFGNEKVFLMGSAYGGALALAYAVKYQDHLKGLIVSGG-------LSS 133
Query: 206 CDIYYKEVTKIYRDVSPKCEENIR---NSWTFINTELQ 240
+ KE+ ++ ++ K + I+ +S ++ N E Q
Sbjct: 134 VPLTVKEMNRLIDELPAKYRDAIKKYGSSGSYENPEYQ 171
>pdb|1MT3|A Chain A, Crystal Structure Of The Tricorn Interacting Factor
Selenomethionine-f1
Length = 293
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 146 SLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTNDLAP 205
+E+A LR F V G SYGG LA +KY ++G + S L+
Sbjct: 82 GVEEAEALR-SKLFGNEKVFLXGSSYGGALALAYAVKYQDHLKGLIVSGG-------LSS 133
Query: 206 CDIYYKEVTKIYRDVSPKCEENIR---NSWTFINTELQ 240
+ KE ++ ++ K + I+ +S ++ N E Q
Sbjct: 134 VPLTVKEXNRLIDELPAKYRDAIKKYGSSGSYENPEYQ 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,259,513
Number of Sequences: 62578
Number of extensions: 428477
Number of successful extensions: 969
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 945
Number of HSP's gapped (non-prelim): 20
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)