Query psy1220
Match_columns 337
No_of_seqs 354 out of 3380
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 21:23:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1220.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1220hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2183|consensus 100.0 1.4E-60 3E-65 435.7 25.8 270 32-310 44-313 (492)
2 PF05577 Peptidase_S28: Serine 100.0 8E-49 1.7E-53 381.7 21.8 255 40-309 1-257 (434)
3 KOG2182|consensus 100.0 3.8E-43 8.2E-48 329.5 22.0 262 30-307 48-314 (514)
4 PLN02824 hydrolase, alpha/beta 99.8 7.4E-18 1.6E-22 155.6 16.6 109 69-197 29-137 (294)
5 TIGR02240 PHA_depoly_arom poly 99.7 1.4E-17 3E-22 152.4 11.9 103 69-198 25-127 (276)
6 PRK10673 acyl-CoA esterase; Pr 99.7 1.2E-16 2.6E-21 143.8 15.5 98 69-194 16-113 (255)
7 PRK00870 haloalkane dehalogena 99.7 3.4E-16 7.3E-21 145.2 13.4 104 69-196 46-149 (302)
8 PF05576 Peptidase_S37: PS-10 99.7 2.2E-16 4.7E-21 146.7 11.8 169 36-236 34-203 (448)
9 PRK03592 haloalkane dehalogena 99.7 1.6E-16 3.5E-21 146.7 11.0 102 69-197 27-128 (295)
10 PLN02965 Probable pheophorbida 99.7 4.1E-16 9E-21 141.1 11.2 104 69-196 3-106 (255)
11 PRK06489 hypothetical protein; 99.7 1.5E-15 3.2E-20 144.6 15.0 111 69-195 69-187 (360)
12 PRK10349 carboxylesterase BioH 99.7 5.2E-16 1.1E-20 140.2 11.3 95 69-195 12-107 (256)
13 KOG4178|consensus 99.6 7.6E-16 1.6E-20 140.0 10.9 106 69-198 44-149 (322)
14 PLN02578 hydrolase 99.6 4E-16 8.7E-21 148.2 9.1 102 68-196 85-186 (354)
15 KOG4409|consensus 99.6 2.9E-15 6.3E-20 136.8 13.9 106 69-197 90-195 (365)
16 TIGR03343 biphenyl_bphD 2-hydr 99.6 1.5E-15 3.2E-20 138.8 10.8 106 69-196 30-135 (282)
17 PLN02298 hydrolase, alpha/beta 99.6 5.3E-15 1.1E-19 138.9 14.7 110 70-197 60-169 (330)
18 PF12697 Abhydrolase_6: Alpha/ 99.6 2.3E-15 5E-20 130.8 11.4 102 72-198 1-102 (228)
19 TIGR01250 pro_imino_pep_2 prol 99.6 3E-15 6.6E-20 135.5 12.5 106 69-196 25-130 (288)
20 TIGR03611 RutD pyrimidine util 99.6 9.4E-15 2E-19 130.4 15.3 102 69-196 13-114 (257)
21 PRK11126 2-succinyl-6-hydroxy- 99.6 1.9E-15 4.2E-20 134.9 10.7 99 69-196 2-101 (242)
22 PHA02857 monoglyceride lipase; 99.6 6.4E-15 1.4E-19 134.5 13.8 107 71-198 27-133 (276)
23 PLN02385 hydrolase; alpha/beta 99.6 5.4E-15 1.2E-19 140.1 13.4 110 69-196 87-196 (349)
24 TIGR02427 protocat_pcaD 3-oxoa 99.6 5.6E-15 1.2E-19 130.7 12.4 102 69-197 13-114 (251)
25 PLN03087 BODYGUARD 1 domain co 99.6 5.7E-15 1.2E-19 144.2 13.4 107 69-198 201-310 (481)
26 PLN02679 hydrolase, alpha/beta 99.6 3.3E-15 7.1E-20 142.3 10.8 103 69-197 88-191 (360)
27 KOG2382|consensus 99.6 1.8E-14 3.9E-19 131.0 13.9 220 69-322 52-280 (315)
28 PLN02211 methyl indole-3-aceta 99.6 7E-15 1.5E-19 134.7 11.4 104 69-196 18-121 (273)
29 PRK03204 haloalkane dehalogena 99.6 5.6E-15 1.2E-19 136.2 10.4 103 69-197 34-136 (286)
30 KOG1455|consensus 99.6 2.9E-14 6.3E-19 128.0 14.3 142 40-202 27-168 (313)
31 PRK10749 lysophospholipase L2; 99.6 1.3E-14 2.8E-19 136.6 12.7 112 69-196 54-165 (330)
32 TIGR03056 bchO_mg_che_rel puta 99.6 1.6E-14 3.4E-19 131.1 12.4 103 69-197 28-130 (278)
33 PRK08775 homoserine O-acetyltr 99.6 5.8E-15 1.3E-19 139.6 8.1 104 69-196 57-172 (343)
34 TIGR01738 bioH putative pimelo 99.6 6.4E-14 1.4E-18 123.6 14.0 94 70-195 5-98 (245)
35 COG2267 PldB Lysophospholipase 99.6 3.5E-14 7.7E-19 131.4 12.5 107 70-197 35-142 (298)
36 TIGR01249 pro_imino_pep_1 prol 99.6 1.3E-14 2.8E-19 135.0 9.4 104 69-197 27-130 (306)
37 PLN03084 alpha/beta hydrolase 99.5 3.6E-14 7.9E-19 135.6 11.6 106 69-197 127-232 (383)
38 KOG2564|consensus 99.5 1.3E-13 2.9E-18 121.9 13.9 190 34-257 43-238 (343)
39 TIGR03695 menH_SHCHC 2-succiny 99.5 4.4E-14 9.6E-19 124.5 10.6 102 70-196 2-104 (251)
40 TIGR03101 hydr2_PEP hydrolase, 99.5 1.6E-13 3.5E-18 124.7 14.2 109 69-197 25-134 (266)
41 PLN02894 hydrolase, alpha/beta 99.5 4.9E-13 1.1E-17 129.1 14.0 103 69-197 105-211 (402)
42 TIGR01392 homoserO_Ac_trn homo 99.5 2.5E-13 5.3E-18 128.9 10.3 117 69-197 31-162 (351)
43 PRK07581 hypothetical protein; 99.4 1.7E-13 3.6E-18 129.3 7.9 83 100-196 71-158 (339)
44 COG1647 Esterase/lipase [Gener 99.4 3E-12 6.4E-17 110.0 14.7 110 65-200 12-121 (243)
45 PLN02511 hydrolase 99.4 9.7E-13 2.1E-17 126.5 13.0 108 69-197 100-210 (388)
46 PLN02652 hydrolase; alpha/beta 99.4 1.1E-12 2.4E-17 126.0 13.3 107 69-197 136-245 (395)
47 TIGR01607 PST-A Plasmodium sub 99.4 1.5E-12 3.2E-17 122.7 12.6 122 69-197 21-185 (332)
48 PRK14875 acetoin dehydrogenase 99.4 1.5E-12 3.3E-17 123.7 12.4 101 69-196 131-231 (371)
49 PRK00175 metX homoserine O-ace 99.4 1.9E-12 4E-17 124.2 10.9 117 69-197 48-182 (379)
50 KOG1454|consensus 99.4 1.3E-12 2.8E-17 122.4 8.7 109 69-200 58-169 (326)
51 PLN02980 2-oxoglutarate decarb 99.3 3.9E-12 8.5E-17 141.0 11.1 108 69-195 1371-1478(1655)
52 TIGR01840 esterase_phb esteras 99.3 8.2E-12 1.8E-16 110.0 11.1 119 69-198 13-131 (212)
53 PF00561 Abhydrolase_1: alpha/ 99.3 3.7E-12 8.1E-17 111.8 8.3 78 101-196 1-78 (230)
54 TIGR03100 hydr1_PEP hydrolase, 99.3 1.9E-11 4.2E-16 112.0 13.2 109 69-198 26-135 (274)
55 PRK05855 short chain dehydroge 99.3 5.2E-12 1.1E-16 127.0 9.5 104 69-196 25-130 (582)
56 PRK10985 putative hydrolase; P 99.3 2.6E-11 5.6E-16 113.8 12.8 110 69-198 58-169 (324)
57 PRK10566 esterase; Provisional 99.3 3.5E-11 7.6E-16 108.1 12.4 110 69-193 27-138 (249)
58 PRK13604 luxD acyl transferase 99.3 3.7E-11 8E-16 110.4 11.8 131 41-196 9-140 (307)
59 TIGR03230 lipo_lipase lipoprot 99.3 6.6E-11 1.4E-15 114.0 13.1 109 69-195 41-152 (442)
60 PRK05077 frsA fermentation/res 99.2 1.5E-10 3.3E-15 112.1 12.6 107 69-198 193-301 (414)
61 cd00707 Pancreat_lipase_like P 99.2 9.2E-11 2E-15 107.5 10.4 109 69-195 36-145 (275)
62 TIGR02821 fghA_ester_D S-formy 99.2 3.6E-10 7.7E-15 103.7 14.1 119 69-197 42-173 (275)
63 COG0596 MhpC Predicted hydrola 99.2 6.1E-11 1.3E-15 104.0 8.7 102 70-198 22-124 (282)
64 TIGR01836 PHA_synth_III_C poly 99.2 2.9E-10 6.3E-15 107.8 12.4 109 69-199 62-173 (350)
65 PRK11071 esterase YqiA; Provis 99.1 3.9E-10 8.3E-15 97.8 9.9 89 70-196 2-92 (190)
66 PF12695 Abhydrolase_5: Alpha/ 99.1 5.3E-10 1.2E-14 91.5 9.1 93 71-195 1-93 (145)
67 PRK06765 homoserine O-acetyltr 99.1 4.7E-09 1E-13 100.8 16.9 141 43-196 28-195 (389)
68 KOG4391|consensus 99.1 2.8E-10 6.1E-15 97.5 7.0 103 69-193 78-180 (300)
69 PLN02442 S-formylglutathione h 99.1 3.2E-09 7E-14 97.8 13.7 144 43-197 22-178 (283)
70 PLN02872 triacylglycerol lipas 99.0 4.7E-10 1E-14 107.7 7.2 116 69-196 74-196 (395)
71 KOG1552|consensus 99.0 2.5E-09 5.4E-14 94.5 8.5 100 70-194 61-160 (258)
72 TIGR00976 /NonD putative hydro 98.9 7.8E-09 1.7E-13 103.9 12.2 109 70-197 23-132 (550)
73 TIGR03502 lipase_Pla1_cef extr 98.9 5.1E-09 1.1E-13 107.0 10.8 108 71-184 451-577 (792)
74 PF10503 Esterase_phd: Esteras 98.9 7.8E-09 1.7E-13 91.2 10.1 117 70-198 16-133 (220)
75 PF06342 DUF1057: Alpha/beta h 98.9 2.1E-08 4.6E-13 89.9 12.8 105 70-200 36-140 (297)
76 PLN00021 chlorophyllase 98.9 1.3E-08 2.8E-13 94.9 11.1 105 69-195 52-164 (313)
77 PF10230 DUF2305: Uncharacteri 98.9 1.5E-07 3.2E-12 85.9 17.0 229 71-322 4-248 (266)
78 TIGR01838 PHA_synth_I poly(R)- 98.9 2.5E-08 5.4E-13 98.9 12.7 109 69-199 188-304 (532)
79 PF07819 PGAP1: PGAP1-like pro 98.8 6.6E-08 1.4E-12 86.0 13.5 113 69-200 4-126 (225)
80 COG0429 Predicted hydrolase of 98.8 8.6E-08 1.9E-12 87.7 12.7 127 50-198 58-186 (345)
81 PF00975 Thioesterase: Thioest 98.8 3.4E-08 7.4E-13 87.5 8.9 101 70-197 1-104 (229)
82 PRK11460 putative hydrolase; P 98.7 1.3E-07 2.8E-12 84.5 11.9 118 69-196 16-137 (232)
83 PRK07868 acyl-CoA synthetase; 98.7 9.2E-08 2E-12 102.6 12.7 109 69-198 67-178 (994)
84 PRK10162 acetyl esterase; Prov 98.7 1.9E-07 4.2E-12 87.4 12.3 109 69-197 81-195 (318)
85 PF12146 Hydrolase_4: Putative 98.6 1.9E-07 4E-12 69.0 8.3 64 69-145 16-79 (79)
86 COG1506 DAP2 Dipeptidyl aminop 98.6 7.6E-08 1.7E-12 98.0 8.2 111 71-199 396-509 (620)
87 COG2021 MET2 Homoserine acetyl 98.6 3.6E-07 7.9E-12 84.9 10.9 135 69-218 51-200 (368)
88 PF07859 Abhydrolase_3: alpha/ 98.6 1.4E-07 3E-12 82.5 7.2 106 72-197 1-110 (211)
89 KOG2984|consensus 98.6 4.8E-08 1.1E-12 83.1 3.5 106 69-196 42-148 (277)
90 PF05677 DUF818: Chlamydia CHL 98.5 1.9E-06 4.1E-11 79.4 12.3 98 69-184 137-237 (365)
91 KOG1838|consensus 98.5 2.4E-06 5.2E-11 80.9 13.1 109 70-198 126-236 (409)
92 COG3509 LpqC Poly(3-hydroxybut 98.5 3.3E-06 7.1E-11 76.3 12.7 117 69-197 60-179 (312)
93 PRK10115 protease 2; Provision 98.4 1.2E-06 2.5E-11 90.3 11.0 112 70-198 445-560 (686)
94 PF00326 Peptidase_S9: Prolyl 98.4 5.4E-07 1.2E-11 79.1 7.1 95 93-199 7-101 (213)
95 KOG2565|consensus 98.4 6.5E-07 1.4E-11 82.7 7.6 106 70-199 153-266 (469)
96 KOG4667|consensus 98.4 1.9E-06 4.2E-11 74.2 8.8 103 69-196 33-138 (269)
97 KOG1553|consensus 98.4 4.1E-06 8.9E-11 76.8 11.1 76 98-194 266-342 (517)
98 PTZ00472 serine carboxypeptida 98.4 4.5E-06 9.9E-11 82.0 12.4 86 101-199 122-218 (462)
99 PRK10252 entF enterobactin syn 98.3 1.6E-06 3.5E-11 95.6 9.9 99 69-195 1068-1169(1296)
100 KOG2183|consensus 98.3 1.8E-07 3.9E-12 87.4 2.0 35 303-337 268-302 (492)
101 COG3208 GrsT Predicted thioest 98.3 1E-06 2.2E-11 77.7 6.1 97 71-194 9-109 (244)
102 PF01674 Lipase_2: Lipase (cla 98.3 2.5E-06 5.4E-11 75.3 7.9 92 69-183 1-96 (219)
103 PLN02733 phosphatidylcholine-s 98.3 2.8E-06 6E-11 82.6 8.8 87 92-200 114-204 (440)
104 PF06500 DUF1100: Alpha/beta h 98.3 2E-06 4.3E-11 81.9 6.9 111 69-200 189-299 (411)
105 COG3319 Thioesterase domains o 98.2 9.4E-06 2E-10 73.2 9.5 101 70-198 1-104 (257)
106 PF02129 Peptidase_S15: X-Pro 98.2 4.4E-06 9.5E-11 76.4 7.6 85 96-198 53-137 (272)
107 KOG3724|consensus 98.2 3.6E-05 7.9E-10 77.4 14.0 41 161-201 181-224 (973)
108 PF03096 Ndr: Ndr family; Int 98.2 1E-05 2.2E-10 73.4 9.1 109 70-198 24-135 (283)
109 PF09752 DUF2048: Uncharacteri 98.1 4.7E-05 1E-09 70.9 12.6 145 31-191 51-204 (348)
110 PF00756 Esterase: Putative es 98.1 4.2E-05 9.1E-10 68.7 12.1 34 164-197 117-150 (251)
111 TIGR01839 PHA_synth_II poly(R) 98.1 3.2E-05 7E-10 76.5 12.0 110 69-200 215-331 (560)
112 PF05728 UPF0227: Uncharacteri 98.1 2.6E-05 5.6E-10 67.3 9.4 85 72-194 2-88 (187)
113 PF06028 DUF915: Alpha/beta hy 98.0 2.7E-05 5.8E-10 70.4 9.3 119 69-201 11-147 (255)
114 KOG2931|consensus 98.0 0.00034 7.4E-09 63.2 15.7 109 70-198 47-158 (326)
115 COG0657 Aes Esterase/lipase [L 98.0 7.2E-05 1.6E-09 69.7 12.0 106 69-194 79-188 (312)
116 COG4099 Predicted peptidase [G 98.0 2E-05 4.3E-10 71.1 7.5 38 158-195 265-302 (387)
117 PF02230 Abhydrolase_2: Phosph 98.0 3.4E-05 7.5E-10 68.0 8.8 60 133-199 83-142 (216)
118 PF05448 AXE1: Acetyl xylan es 98.0 6E-05 1.3E-09 70.6 10.5 112 71-194 85-206 (320)
119 COG2945 Predicted hydrolase of 97.9 5.1E-05 1.1E-09 64.5 8.7 107 69-198 27-138 (210)
120 PF01738 DLH: Dienelactone hyd 97.9 2E-05 4.3E-10 69.5 6.3 113 69-195 14-130 (218)
121 KOG2281|consensus 97.8 0.00017 3.7E-09 71.2 11.2 119 66-197 638-762 (867)
122 KOG2100|consensus 97.8 8.5E-05 1.8E-09 77.2 9.5 118 69-198 525-644 (755)
123 COG0412 Dienelactone hydrolase 97.8 0.00022 4.7E-09 64.0 10.8 113 71-194 29-143 (236)
124 PF12740 Chlorophyllase2: Chlo 97.8 0.0002 4.4E-09 64.4 10.4 104 69-194 16-128 (259)
125 PF06821 Ser_hydrolase: Serine 97.8 0.00012 2.6E-09 62.3 8.5 37 162-198 55-92 (171)
126 cd00312 Esterase_lipase Estera 97.8 6.8E-05 1.5E-09 74.4 8.0 129 52-198 78-214 (493)
127 PF08538 DUF1749: Protein of u 97.8 0.00088 1.9E-08 61.5 14.5 103 70-198 33-148 (303)
128 PF12715 Abhydrolase_7: Abhydr 97.8 0.00017 3.7E-09 68.0 10.0 93 93-195 154-258 (390)
129 PLN03016 sinapoylglucose-malat 97.8 0.00034 7.3E-09 68.2 12.4 86 101-199 116-212 (433)
130 PF05990 DUF900: Alpha/beta hy 97.7 0.00022 4.8E-09 63.8 10.0 106 69-194 18-134 (233)
131 PF00151 Lipase: Lipase; Inte 97.7 6.5E-05 1.4E-09 70.6 5.8 108 69-194 71-184 (331)
132 COG4757 Predicted alpha/beta h 97.7 0.00013 2.9E-09 63.7 7.2 92 72-180 32-123 (281)
133 KOG1515|consensus 97.7 0.0025 5.4E-08 59.9 16.2 109 70-199 91-209 (336)
134 PRK05371 x-prolyl-dipeptidyl a 97.7 0.00019 4.2E-09 74.7 9.6 92 93-196 272-372 (767)
135 COG3571 Predicted hydrolase of 97.6 0.0004 8.7E-09 57.4 9.1 107 71-200 16-127 (213)
136 COG0400 Predicted esterase [Ge 97.6 0.00021 4.5E-09 62.6 7.3 55 137-197 80-134 (207)
137 COG1075 LipA Predicted acetylt 97.6 0.00018 3.9E-09 67.9 7.5 104 69-200 59-167 (336)
138 PF05057 DUF676: Putative seri 97.6 0.00031 6.7E-09 62.1 8.2 39 162-200 78-128 (217)
139 smart00824 PKS_TE Thioesterase 97.6 0.00031 6.7E-09 60.4 7.9 72 101-195 26-100 (212)
140 KOG4627|consensus 97.6 0.00031 6.6E-09 60.4 7.5 104 70-197 68-172 (270)
141 PRK10439 enterobactin/ferric e 97.5 0.0019 4.2E-08 62.6 14.0 38 160-197 286-323 (411)
142 PLN02209 serine carboxypeptida 97.5 0.0018 3.8E-08 63.3 13.7 85 101-198 118-213 (437)
143 PF11144 DUF2920: Protein of u 97.5 0.002 4.4E-08 61.2 13.5 55 139-198 165-220 (403)
144 COG3458 Acetyl esterase (deace 97.5 0.0011 2.5E-08 59.3 10.3 113 70-194 84-207 (321)
145 PF03403 PAF-AH_p_II: Platelet 97.4 0.00016 3.4E-09 69.4 4.8 125 69-198 99-263 (379)
146 COG4814 Uncharacterized protei 97.4 0.0011 2.3E-08 58.9 9.2 115 69-198 45-177 (288)
147 PF00450 Peptidase_S10: Serine 97.4 0.0014 3E-08 63.3 10.6 119 69-199 39-183 (415)
148 COG2819 Predicted hydrolase of 97.3 0.0057 1.2E-07 55.0 12.9 40 160-199 135-174 (264)
149 PRK04940 hypothetical protein; 97.2 0.0019 4.1E-08 55.0 8.7 54 133-197 39-92 (180)
150 PF07224 Chlorophyllase: Chlor 97.2 0.0016 3.5E-08 58.1 8.5 100 69-194 45-154 (307)
151 PF06057 VirJ: Bacterial virul 97.1 0.0044 9.5E-08 53.1 9.8 95 72-194 5-104 (192)
152 COG4782 Uncharacterized protei 97.1 0.0038 8.2E-08 58.3 9.3 120 69-215 116-245 (377)
153 COG3150 Predicted esterase [Ge 97.0 0.0036 7.8E-08 52.2 8.2 87 72-193 2-88 (191)
154 KOG2624|consensus 97.0 0.0017 3.7E-08 62.3 7.3 120 69-197 73-199 (403)
155 cd00741 Lipase Lipase. Lipase 97.0 0.0026 5.6E-08 52.7 6.9 38 160-197 26-67 (153)
156 KOG1282|consensus 96.9 0.015 3.2E-07 56.7 12.9 88 101-200 118-216 (454)
157 PF02450 LCAT: Lecithin:choles 96.9 0.0016 3.4E-08 62.8 6.1 59 133-200 99-163 (389)
158 COG4188 Predicted dienelactone 96.9 0.0023 5.1E-08 60.0 6.9 108 70-185 71-182 (365)
159 PLN02633 palmitoyl protein thi 96.9 0.036 7.8E-07 51.1 14.4 110 69-203 25-137 (314)
160 PF00135 COesterase: Carboxyle 96.9 0.0047 1E-07 61.6 9.4 114 70-199 125-247 (535)
161 TIGR01849 PHB_depoly_PhaZ poly 96.9 0.005 1.1E-07 59.3 9.1 104 70-200 103-211 (406)
162 COG0627 Predicted esterase [Ge 96.8 0.0027 5.8E-08 59.2 6.6 38 163-200 153-190 (316)
163 KOG3101|consensus 96.6 0.0036 7.9E-08 54.1 5.3 124 69-194 43-173 (283)
164 COG2272 PnbA Carboxylesterase 96.6 0.0073 1.6E-07 58.6 7.9 114 69-198 93-218 (491)
165 PF10340 DUF2424: Protein of u 96.6 0.015 3.3E-07 55.2 9.9 121 54-198 105-236 (374)
166 COG2936 Predicted acyl esteras 96.6 0.0034 7.3E-08 62.3 5.6 83 97-197 77-159 (563)
167 COG3545 Predicted esterase of 96.6 0.018 3.9E-07 48.6 8.9 54 132-198 42-95 (181)
168 PF06259 Abhydrolase_8: Alpha/ 96.6 0.0068 1.5E-07 51.7 6.5 59 133-198 87-145 (177)
169 COG3243 PhaC Poly(3-hydroxyalk 96.5 0.011 2.4E-07 56.3 8.3 110 69-200 107-220 (445)
170 PF01764 Lipase_3: Lipase (cla 96.5 0.0052 1.1E-07 49.8 5.4 23 161-183 63-85 (140)
171 PF08840 BAAT_C: BAAT / Acyl-C 96.5 0.0055 1.2E-07 54.0 5.7 54 139-199 5-58 (213)
172 PLN02606 palmitoyl-protein thi 96.5 0.096 2.1E-06 48.3 13.7 110 69-203 26-138 (306)
173 cd00519 Lipase_3 Lipase (class 96.4 0.009 1.9E-07 53.0 6.6 52 135-194 109-165 (229)
174 PF11187 DUF2974: Protein of u 96.3 0.035 7.5E-07 49.3 9.8 52 139-199 70-125 (224)
175 KOG2112|consensus 96.3 0.02 4.2E-07 49.6 7.6 117 69-196 3-127 (206)
176 COG2939 Carboxypeptidase C (ca 96.2 0.0097 2.1E-07 57.9 6.2 111 69-196 100-235 (498)
177 PF03959 FSH1: Serine hydrolas 96.2 0.03 6.6E-07 49.1 9.0 116 69-198 4-146 (212)
178 KOG2541|consensus 96.2 0.17 3.7E-06 45.6 13.4 107 70-202 24-133 (296)
179 PF02089 Palm_thioest: Palmito 96.2 0.018 3.9E-07 52.5 7.3 114 69-203 5-122 (279)
180 PF03583 LIP: Secretory lipase 96.2 0.044 9.6E-07 50.6 10.1 89 91-197 18-113 (290)
181 PF02273 Acyl_transf_2: Acyl t 96.0 0.17 3.7E-06 45.1 12.1 120 54-198 14-135 (294)
182 KOG3967|consensus 95.9 0.081 1.8E-06 46.0 9.7 36 162-197 190-227 (297)
183 KOG3847|consensus 95.8 0.035 7.6E-07 51.0 7.2 35 161-196 240-274 (399)
184 PLN02213 sinapoylglucose-malat 95.7 0.034 7.5E-07 52.1 7.5 86 101-199 2-98 (319)
185 KOG4840|consensus 95.7 0.042 9E-07 48.1 7.2 100 70-194 36-141 (299)
186 PLN02454 triacylglycerol lipas 95.4 0.059 1.3E-06 51.8 7.8 42 135-182 207-248 (414)
187 PLN02310 triacylglycerol lipas 95.3 0.041 8.9E-07 52.8 6.3 57 134-198 189-249 (405)
188 KOG3975|consensus 95.2 0.25 5.5E-06 44.1 10.5 123 53-194 16-144 (301)
189 KOG2369|consensus 95.2 0.02 4.3E-07 55.3 3.8 59 133-199 161-227 (473)
190 PLN02162 triacylglycerol lipas 95.0 0.071 1.5E-06 51.8 7.1 40 160-199 276-323 (475)
191 PLN02571 triacylglycerol lipas 94.9 0.032 6.9E-07 53.6 4.4 21 162-182 226-246 (413)
192 PLN03037 lipase class 3 family 94.7 0.076 1.6E-06 52.3 6.6 56 134-197 298-358 (525)
193 PLN00413 triacylglycerol lipas 94.5 0.12 2.6E-06 50.4 7.2 39 160-198 282-328 (479)
194 COG1770 PtrB Protease II [Amin 94.5 0.14 3.1E-06 51.5 7.8 61 129-195 500-560 (682)
195 PF12048 DUF3530: Protein of u 94.4 1.2 2.5E-05 41.6 13.6 119 69-197 87-229 (310)
196 PF11339 DUF3141: Protein of u 94.4 0.64 1.4E-05 45.8 11.8 109 69-201 68-179 (581)
197 PF01083 Cutinase: Cutinase; 94.3 0.36 7.9E-06 41.2 9.2 59 133-199 60-124 (179)
198 PLN02517 phosphatidylcholine-s 94.2 0.065 1.4E-06 53.6 4.7 58 134-199 193-265 (642)
199 PLN02408 phospholipase A1 94.1 0.063 1.4E-06 50.9 4.3 37 162-198 200-241 (365)
200 KOG1283|consensus 93.8 0.36 7.8E-06 44.6 8.4 98 69-183 30-143 (414)
201 PLN02324 triacylglycerol lipas 93.7 0.082 1.8E-06 50.8 4.3 20 162-181 215-234 (415)
202 PLN02934 triacylglycerol lipas 93.4 0.27 5.8E-06 48.4 7.4 39 160-198 319-365 (515)
203 PLN02847 triacylglycerol lipas 93.1 0.15 3.2E-06 51.0 5.2 22 160-181 249-270 (633)
204 PLN02802 triacylglycerol lipas 93.1 0.11 2.4E-06 51.0 4.2 36 162-197 330-370 (509)
205 PLN02753 triacylglycerol lipas 93.0 0.15 3.3E-06 50.2 5.1 21 161-181 311-331 (531)
206 COG4947 Uncharacterized protei 92.9 0.36 7.8E-06 40.7 6.4 113 69-200 26-139 (227)
207 KOG2237|consensus 92.9 0.14 3.1E-06 51.3 4.8 83 99-196 498-583 (712)
208 PLN02761 lipase class 3 family 92.4 0.15 3.4E-06 50.2 4.2 20 162-181 294-313 (527)
209 KOG1516|consensus 92.4 0.29 6.4E-06 49.2 6.4 40 160-199 193-234 (545)
210 COG2382 Fes Enterochelin ester 91.6 0.13 2.8E-06 47.1 2.6 39 162-200 177-215 (299)
211 PLN02719 triacylglycerol lipas 91.6 0.37 8.1E-06 47.5 5.7 20 162-181 298-317 (518)
212 PF07519 Tannase: Tannase and 90.4 0.47 1E-05 47.0 5.3 133 53-198 17-151 (474)
213 PF11288 DUF3089: Protein of u 89.9 0.84 1.8E-05 39.9 5.9 44 133-183 73-116 (207)
214 KOG4569|consensus 89.7 0.54 1.2E-05 44.4 5.0 37 161-197 170-212 (336)
215 KOG4388|consensus 89.5 1.1 2.4E-05 44.7 7.0 107 72-198 399-509 (880)
216 PF04301 DUF452: Protein of un 89.5 9.1 0.0002 33.6 12.1 37 162-200 57-93 (213)
217 COG3946 VirJ Type IV secretory 88.7 2.6 5.6E-05 40.4 8.5 65 97-185 284-349 (456)
218 PF07082 DUF1350: Protein of u 88.6 3.7 7.9E-05 36.9 9.0 105 70-194 17-122 (250)
219 KOG1202|consensus 87.7 24 0.00053 38.8 15.4 94 69-197 2123-2220(2376)
220 KOG3043|consensus 87.4 0.65 1.4E-05 40.9 3.5 92 92-194 60-151 (242)
221 COG1505 Serine proteases of th 86.7 0.33 7.1E-06 48.5 1.4 91 91-194 442-532 (648)
222 KOG4540|consensus 85.6 1.1 2.4E-05 40.8 4.1 35 160-197 274-308 (425)
223 COG5153 CVT17 Putative lipase 85.6 1.1 2.4E-05 40.8 4.1 35 160-197 274-308 (425)
224 PF05277 DUF726: Protein of un 84.0 2.8 6.1E-05 39.6 6.3 40 160-199 218-262 (345)
225 KOG1551|consensus 83.8 4.3 9.3E-05 36.8 6.9 118 49-189 98-222 (371)
226 KOG2551|consensus 81.5 12 0.00026 33.0 8.7 98 69-181 5-123 (230)
227 TIGR03712 acc_sec_asp2 accesso 80.2 8.3 0.00018 38.0 8.0 96 64-185 282-381 (511)
228 PF05705 DUF829: Eukaryotic pr 78.8 16 0.00035 32.3 9.1 104 71-199 1-114 (240)
229 KOG3253|consensus 72.2 10 0.00022 38.3 6.3 65 131-200 223-289 (784)
230 PLN02748 tRNA dimethylallyltra 69.4 22 0.00048 35.2 8.0 87 69-170 21-120 (468)
231 KOG2029|consensus 68.9 12 0.00026 37.7 6.0 39 161-199 525-574 (697)
232 PRK08118 topology modulation p 65.8 78 0.0017 26.4 11.3 35 73-112 4-38 (167)
233 PRK00091 miaA tRNA delta(2)-is 65.8 36 0.00078 31.7 8.3 76 70-150 4-92 (307)
234 COG0324 MiaA tRNA delta(2)-iso 65.1 37 0.00081 31.6 8.2 87 70-171 3-102 (308)
235 PF08237 PE-PPE: PE-PPE domain 63.7 21 0.00046 31.6 6.1 39 161-199 47-91 (225)
236 PLN02840 tRNA dimethylallyltra 62.4 50 0.0011 32.2 8.8 87 69-170 20-119 (421)
237 PF09949 DUF2183: Uncharacteri 61.9 51 0.0011 25.2 7.1 33 160-192 63-97 (100)
238 KOG4372|consensus 60.4 6.6 0.00014 37.7 2.4 18 162-179 150-167 (405)
239 TIGR00174 miaA tRNA isopenteny 58.2 43 0.00093 30.9 7.3 84 72-170 1-97 (287)
240 PF04083 Abhydro_lipase: Parti 56.4 26 0.00057 24.3 4.3 19 69-87 43-61 (63)
241 PF00004 AAA: ATPase family as 50.1 82 0.0018 24.2 7.0 35 73-112 1-35 (132)
242 PF06792 UPF0261: Uncharacteri 47.4 1.3E+02 0.0028 29.2 8.8 110 71-191 2-124 (403)
243 PRK02399 hypothetical protein; 45.2 2.1E+02 0.0045 27.8 9.8 110 71-191 4-126 (406)
244 PF02230 Abhydrolase_2: Phosph 41.7 91 0.002 26.9 6.5 60 69-146 155-214 (216)
245 PF11713 Peptidase_C80: Peptid 41.5 41 0.0009 28.0 4.1 59 104-174 57-116 (157)
246 COG1448 TyrB Aspartate/tyrosin 39.1 1.9E+02 0.0042 27.8 8.4 89 69-194 171-262 (396)
247 PF06441 EHN: Epoxide hydrolas 38.7 24 0.00051 27.6 2.1 15 69-83 92-106 (112)
248 PLN02165 adenylate isopentenyl 38.4 1.5E+02 0.0033 27.9 7.7 88 69-171 42-143 (334)
249 PRK14729 miaA tRNA delta(2)-is 33.8 2.2E+02 0.0048 26.4 8.0 85 70-170 4-101 (300)
250 PF08386 Abhydrolase_4: TAP-li 33.5 83 0.0018 23.9 4.4 43 69-115 34-77 (103)
251 cd01714 ETF_beta The electron 33.3 82 0.0018 27.3 4.8 57 97-183 73-134 (202)
252 cd07207 Pat_ExoU_VipD_like Exo 32.0 64 0.0014 27.3 3.9 23 162-184 27-49 (194)
253 COG1576 Uncharacterized conser 31.7 90 0.002 25.9 4.4 49 100-179 67-115 (155)
254 smart00827 PKS_AT Acyl transfe 30.9 49 0.0011 30.1 3.2 20 162-181 82-101 (298)
255 PHA02595 tk.4 hypothetical pro 30.8 31 0.00067 28.6 1.6 18 169-186 29-46 (154)
256 PF14253 AbiH: Bacteriophage a 30.8 40 0.00087 30.3 2.6 15 162-176 235-249 (270)
257 cd07225 Pat_PNPLA6_PNPLA7 Pata 30.4 67 0.0014 29.9 4.0 23 162-184 43-65 (306)
258 PF03283 PAE: Pectinacetyleste 28.5 1.4E+02 0.0031 28.5 5.9 30 162-191 156-189 (361)
259 cd07198 Patatin Patatin-like p 28.1 86 0.0019 26.1 4.0 24 162-185 26-49 (172)
260 PRK11460 putative hydrolase; P 28.0 2.9E+02 0.0063 24.1 7.6 44 69-113 148-191 (232)
261 COG2069 CdhD CO dehydrogenase/ 27.9 1.6E+02 0.0034 27.3 5.7 42 94-148 158-199 (403)
262 PF00326 Peptidase_S9: Prolyl 26.9 3.2E+02 0.007 23.1 7.6 46 69-115 144-191 (213)
263 TIGR03131 malonate_mdcH malona 26.6 67 0.0014 29.3 3.3 19 162-180 76-94 (295)
264 cd07210 Pat_hypo_W_succinogene 26.4 1E+02 0.0022 27.0 4.3 23 162-184 28-50 (221)
265 cd07212 Pat_PNPLA9 Patatin-lik 26.3 47 0.001 31.0 2.2 21 164-184 34-54 (312)
266 PF08484 Methyltransf_14: C-me 26.0 1.9E+02 0.0041 24.1 5.6 51 133-193 50-100 (160)
267 PF00698 Acyl_transf_1: Acyl t 25.6 50 0.0011 30.6 2.2 19 162-180 84-102 (318)
268 PF10081 Abhydrolase_9: Alpha/ 24.7 5.6E+02 0.012 23.7 8.7 43 156-198 103-148 (289)
269 PF12242 Eno-Rase_NADH_b: NAD( 24.4 2.8E+02 0.0062 20.2 5.5 24 162-185 40-63 (78)
270 PF01972 SDH_sah: Serine dehyd 24.3 3.1E+02 0.0067 25.2 6.9 82 91-191 39-125 (285)
271 KOG2521|consensus 24.0 2.8E+02 0.006 26.4 6.8 109 69-199 38-154 (350)
272 PF13207 AAA_17: AAA domain; P 23.7 99 0.0021 23.6 3.3 32 72-108 1-32 (121)
273 PF02590 SPOUT_MTase: Predicte 22.5 1.4E+02 0.003 24.8 4.1 52 100-183 67-118 (155)
274 COG0149 TpiA Triosephosphate i 21.9 5.7E+02 0.012 23.1 8.1 75 102-200 161-238 (251)
275 cd07228 Pat_NTE_like_bacteria 21.7 1.3E+02 0.0027 25.2 3.8 24 162-185 28-51 (175)
276 KOG3079|consensus 21.4 1.5E+02 0.0034 25.5 4.1 28 69-101 7-34 (195)
277 PRK10279 hypothetical protein; 21.1 1.2E+02 0.0026 28.1 3.8 24 162-185 33-56 (300)
278 cd07227 Pat_Fungal_NTE1 Fungal 20.7 1.3E+02 0.0029 27.4 3.9 23 162-184 38-60 (269)
279 PHA02857 monoglyceride lipase; 20.6 3.5E+02 0.0076 23.8 6.8 62 69-146 209-272 (276)
280 cd03331 Macro_Poa1p_like_SNF2 20.6 62 0.0013 26.8 1.6 17 169-185 30-47 (152)
281 COG0400 Predicted esterase [Ge 20.5 4.6E+02 0.0099 22.8 7.1 46 69-116 146-191 (207)
282 PF07992 Pyr_redox_2: Pyridine 20.5 1.1E+02 0.0025 25.5 3.3 22 163-184 1-22 (201)
No 1
>KOG2183|consensus
Probab=100.00 E-value=1.4e-60 Score=435.70 Aligned_cols=270 Identities=48% Similarity=0.915 Sum_probs=257.8
Q ss_pred CceeeeEEeecCCCCCCCCCeEeeEEEEeCcccCCCCCCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEeccccc
Q psy1220 32 TYETKFFDAKLDHFTYVSNQTFPLKYLINDEFWDEDGGAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYY 111 (337)
Q Consensus 32 ~~~~~~f~q~~dhf~~~~~~tf~qry~~~~~~~~~~~~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~ 111 (337)
.++++||.|+||||++.+..||.|||++|++||+++ ++||||+.|+||+.+.|..++||+|++|+++++.+|+.|||+|
T Consensus 44 ~ye~~yf~q~LDHFsF~~~~tF~qRylin~~fw~~g-~gPIffYtGNEGdie~Fa~ntGFm~D~Ap~~~AllVFaEHRyY 122 (492)
T KOG2183|consen 44 NYETRYFQQPLDHFSFTDNKTFDQRYLINDDFWKKG-EGPIFFYTGNEGDIEWFANNTGFMWDLAPELKALLVFAEHRYY 122 (492)
T ss_pred cceeEEeecccccccccCccceeeEEEEecccccCC-CCceEEEeCCcccHHHHHhccchHHhhhHhhCceEEEeehhcc
Confidence 599999999999999999999999999999999987 6999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEee
Q psy1220 112 GSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGAL 191 (337)
Q Consensus 112 G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v 191 (337)
|+|.|+++.++...+++.|||.+|+++|.++++.+++++ ...+..|+|++|+|||||||+|+++|||+.|.|++
T Consensus 123 GeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~lK~~------~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAl 196 (492)
T KOG2183|consen 123 GESLPFGSQSYKDARHLGYLTSEQALADFAELLTFLKRD------LSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGAL 196 (492)
T ss_pred ccCCCCcchhccChhhhccccHHHHHHHHHHHHHHHhhc------cccccCcEEEecCchhhHHHHHHHhcChhhhhhhh
Confidence 999999999888888999999999999999999999976 36667899999999999999999999999999999
Q ss_pred ecCccccccCCCCChhHHHHHHHHHHhccCcccHHHHHHHHHHHHHhhhCCchhHHHHHhcCCCCCCCCHHHHHHHHHHH
Q psy1220 192 ASSAPMFQTNDLAPCDIYYKEVTKIYRDVSPKCEENIRNSWTFINTELQTDSGRVEFSREWNLCSSLKTQVDVAIFKRYL 271 (337)
Q Consensus 192 ~~sap~~~~~~~~~~~~~~~~v~~~~~~~~~~c~~~~~~~~~~i~~~~~~~~~~~~l~~~f~~~~~~~~~~di~~~~~~~ 271 (337)
++|||+..+.+.++...|++.|++.|.+.+++|...|+++|..++++...+.+.+.|.+.|++|.+++ +|+..+++|+
T Consensus 197 AaSAPvl~f~d~vp~~~f~~ivT~~F~~as~~C~~~I~~sW~ai~~l~~~~nG~q~Ls~~f~lc~~ln--~d~~~l~d~l 274 (492)
T KOG2183|consen 197 AASAPVLYFEDTVPKDVFYRIVTRDFKDASPNCRNTIRKSWDAIDRLAAKDNGLQILSKAFKLCKPLN--DDIGDLKDYL 274 (492)
T ss_pred hccCceEeecCCCCcchhhhHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCcchHHHHHHHhhhccccc--ccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999989999999999999987 4999999999
Q ss_pred HHHHhhhhhccCCCCCCCCCCCCCCchhhHHHHHhhccc
Q psy1220 272 SDMYTTMAMTNYPYPSNFLTPLPGNPVKVDVAIFKRYLS 310 (337)
Q Consensus 272 ~~~~~~~am~~y~~~~~~l~~~~~~pv~~icg~~~~~~~ 310 (337)
++++..+||+||||+++||+++|++||.++|+.++...+
T Consensus 275 ~ea~~ylAMVdYPy~t~Fl~pLPa~PV~~~C~~i~~~~~ 313 (492)
T KOG2183|consen 275 REAYEYLAMVDYPYPTSFLAPLPAWPVKVVCKYINAPGP 313 (492)
T ss_pred HHHHHHHHHhcCCCCccccCcCCCCcHHHHHHHhccCCC
Confidence 999999999999999999999999999999999986543
No 2
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=100.00 E-value=8e-49 Score=381.66 Aligned_cols=255 Identities=41% Similarity=0.717 Sum_probs=202.3
Q ss_pred eecCCCCCCCCCeEeeEEEEeCcccCCCCCCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCC
Q psy1220 40 AKLDHFTYVSNQTFPLKYLINDEFWDEDGGAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGP 119 (337)
Q Consensus 40 q~~dhf~~~~~~tf~qry~~~~~~~~~~~~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~ 119 (337)
|+||||++.+++||.||||++++||++ ++||||+.|||++...+..+.+++.++|+++|+.||++|||+||+|.|+++
T Consensus 1 Q~lDHf~~~~~~tf~qRY~~n~~~~~~--~gpifl~~ggE~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRyYG~S~P~~~ 78 (434)
T PF05577_consen 1 QPLDHFNPSNNGTFSQRYWVNDQYYKP--GGPIFLYIGGEGPIEPFWINNGFMWELAKEFGALVVALEHRYYGKSQPFGD 78 (434)
T ss_dssp EES-SS-SSTT-EEEEEEEEE-TT--T--TSEEEEEE--SS-HHHHHHH-HHHHHHHHHHTEEEEEE--TTSTTB-TTGG
T ss_pred CCCCCCCCCCCCeEEEEEEEEhhhcCC--CCCEEEEECCCCccchhhhcCChHHHHHHHcCCcEEEeehhhhcCCCCccc
Confidence 899999998899999999999999986 599999999999998887778899999999999999999999999999988
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCccccc
Q psy1220 120 KSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQ 199 (337)
Q Consensus 120 ~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~~ 199 (337)
.+++ +|++||++|+++|++.|+++++.+ +...++.|||++|+||||+||+|++.|||+.|.|+|++|||+.+
T Consensus 79 ~s~~---nL~yLt~~QALaD~a~F~~~~~~~-----~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~a 150 (434)
T PF05577_consen 79 LSTE---NLRYLTSEQALADLAYFIRYVKKK-----YNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQA 150 (434)
T ss_dssp GGGS---TTTC-SHHHHHHHHHHHHHHHHHH-----TTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CCH
T ss_pred cchh---hHHhcCHHHHHHHHHHHHHHHHHh-----hcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceeee
Confidence 8865 999999999999999999999976 43446679999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHHHHHHhccCcccHHHHHHHHHHHHHhhhCCchhHHHHHhcCCCCCCCCH--HHHHHHHHHHHHHHhh
Q psy1220 200 TNDLAPCDIYYKEVTKIYRDVSPKCEENIRNSWTFINTELQTDSGRVEFSREWNLCSSLKTQ--VDVAIFKRYLSDMYTT 277 (337)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~~~~~~c~~~~~~~~~~i~~~~~~~~~~~~l~~~f~~~~~~~~~--~di~~~~~~~~~~~~~ 277 (337)
.. ++++|++.|.+.+...+++|.+.++++++.|++++..+.+++.|++.|++|..+... .|+..++..+... .
T Consensus 151 ~~---df~~y~~~v~~~~~~~~~~C~~~i~~a~~~i~~~~~~~~~~~~l~~~f~~~~~~~~~~~~d~~~~~~~~~~~--~ 225 (434)
T PF05577_consen 151 KV---DFWEYFEVVTESLRKYGPNCYDAIRAAFDQIDKLLKTGNGRQQLKKKFKLCFPLDDKNDDDFAYFFSSIADA--F 225 (434)
T ss_dssp CC---TTTHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHCCTCHHHHHHHHHCTBSS---TCHCHHHHHHHHHHHHH--H
T ss_pred ec---ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcccHHHHHHHHhhhccccccccchHHHHHHHHHHHH--H
Confidence 85 899999999999988788899999999999999998888899999999999987754 4555554444333 3
Q ss_pred hhhccCCCCCCCCCCCCCCchhhHHHHHhhcc
Q psy1220 278 MAMTNYPYPSNFLTPLPGNPVKVDVAIFKRYL 309 (337)
Q Consensus 278 ~am~~y~~~~~~l~~~~~~pv~~icg~~~~~~ 309 (337)
.+|+||+++..+..+++..|+..+|..+++..
T Consensus 226 ~~~~qy~~~~~~~~~~~~~~i~~~C~~l~~~~ 257 (434)
T PF05577_consen 226 QGMVQYPYPGNFNSPLPAWPIRQLCDSLTNAS 257 (434)
T ss_dssp HHHT--SS-EESSSEE-SSHHHHHHHHCHTSS
T ss_pred HHHHhcCCCcccccCCCCcchHHHhhhhcccc
Confidence 57899999888877778889999999998654
No 3
>KOG2182|consensus
Probab=100.00 E-value=3.8e-43 Score=329.53 Aligned_cols=262 Identities=30% Similarity=0.488 Sum_probs=213.8
Q ss_pred CCCceeeeEEeecCCCCCCCCCeEeeEEEEeCcccCCCCCCcEEEEeCCCCCcc-chhhhh-HHHHHHHHhcCCcEEEec
Q psy1220 30 AYTYETKFFDAKLDHFTYVSNQTFPLKYLINDEFWDEDGGAPVFFYCGNEDAIE-TFAENL-GFLWESAKRFSARVVLVE 107 (337)
Q Consensus 30 ~~~~~~~~f~q~~dhf~~~~~~tf~qry~~~~~~~~~~~~~pivl~hGg~g~~~-~~~~~~-~~~~~la~~~~~~vi~~D 107 (337)
++..++.||+|++|||+. +++.|.||||.+..+|.+. ++||||+.||||+.. .|..+. +.+..+|+++|+.|+.+|
T Consensus 48 ~~~~~~~~~~Q~lDhF~~-~~~~~~Qq~~y~n~~~~~~-~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lE 125 (514)
T KOG2182|consen 48 PANVEQSTFTQKLDHFDS-SNGKFFQQRFYNNNQWAKP-GGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLE 125 (514)
T ss_pred cccccccchhhhhhhhhc-chhhhhhhheeeccccccC-CCceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEee
Confidence 467889999999999955 4555555555555556445 899999999999876 332333 367789999999999999
Q ss_pred ccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCce
Q psy1220 108 HRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIV 187 (337)
Q Consensus 108 ~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v 187 (337)
||+||+|.|.++.+++ +++++|.+|+++|+++||++++.+ ++..+..|||.+|+||.|.|++|++++|||++
T Consensus 126 HRFYG~S~P~~~~st~---nlk~LSs~QALaDla~fI~~~n~k-----~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~ 197 (514)
T KOG2182|consen 126 HRFYGQSSPIGDLSTS---NLKYLSSLQALADLAEFIKAMNAK-----FNFSDDSKWITFGGSYSGSLSAWFREKYPELT 197 (514)
T ss_pred eeccccCCCCCCCccc---chhhhhHHHHHHHHHHHHHHHHhh-----cCCCCCCCeEEECCCchhHHHHHHHHhCchhh
Confidence 9999999999988865 899999999999999999999987 43333359999999999999999999999999
Q ss_pred eEeeecCccccccCCCCChhHHHHHHHHHHhccCcccHHHHHHHHHHHHHhhhCCchhHHHHHhcCCCCCCC---CHHHH
Q psy1220 188 QGALASSAPMFQTNDLAPCDIYYKEVTKIYRDVSPKCEENIRNSWTFINTELQTDSGRVEFSREWNLCSSLK---TQVDV 264 (337)
Q Consensus 188 ~~~v~~sap~~~~~~~~~~~~~~~~v~~~~~~~~~~c~~~~~~~~~~i~~~~~~~~~~~~l~~~f~~~~~~~---~~~di 264 (337)
.|+|++|||+.+.. ||.+|.++|++.++..+.+|.+.+++++..+++++.+..+++.|++.|++|+++. .+.|+
T Consensus 198 ~GsvASSapv~A~~---DF~EY~~VVe~s~~~~~~~C~~ai~~~f~~~~~l~~t~~gr~~Lk~~Fnl~~~f~~~~s~~d~ 274 (514)
T KOG2182|consen 198 VGSVASSAPVLAKV---DFYEYLMVVEESLRRYSPECADAIKEGFKSMEELLLTKGGRQALKSLFNLCPPFDNNVSDTDQ 274 (514)
T ss_pred eeecccccceeEEe---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhccCCccccchhHHHH
Confidence 99999999999985 8999999999999998999999999999999999999889999999999999983 33345
Q ss_pred HHHHHHHHHHHhhhhhccCCCCCCCCCCCCCCchhhHHHHHhh
Q psy1220 265 AIFKRYLSDMYTTMAMTNYPYPSNFLTPLPGNPVKVDVAIFKR 307 (337)
Q Consensus 265 ~~~~~~~~~~~~~~am~~y~~~~~~l~~~~~~pv~~icg~~~~ 307 (337)
..++.-+.+.|. +++||...+.. ....+..+..+|..|.+
T Consensus 275 ~~ff~nv~~~Fq--gvvQY~gd~~~-~~~~~~~i~~~C~~l~n 314 (514)
T KOG2182|consen 275 HNFFSNVYSNFQ--GVVQYSGDNSN-ATASGLGIPAMCDILNN 314 (514)
T ss_pred HHHHHHHHHhhh--hheeecCCCCc-ccccccChhHHHHHhhc
Confidence 555554444443 46777666621 11222348889988876
No 4
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.78 E-value=7.4e-18 Score=155.56 Aligned_cols=109 Identities=19% Similarity=0.274 Sum_probs=88.4
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
+.||||+||..++...|.. ++..|+++ ++|+++|+||||.|........ +....++.++.++|+.++++.++
T Consensus 29 ~~~vlllHG~~~~~~~w~~---~~~~L~~~--~~vi~~DlpG~G~S~~~~~~~~---~~~~~~~~~~~a~~l~~~l~~l~ 100 (294)
T PLN02824 29 GPALVLVHGFGGNADHWRK---NTPVLAKS--HRVYAIDLLGYGYSDKPNPRSA---PPNSFYTFETWGEQLNDFCSDVV 100 (294)
T ss_pred CCeEEEECCCCCChhHHHH---HHHHHHhC--CeEEEEcCCCCCCCCCCccccc---cccccCCHHHHHHHHHHHHHHhc
Confidence 5789999999998887765 35667665 5899999999999986421100 01135789999999999999887
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCccc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPM 197 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~ 197 (337)
. .+++++||||||++|+.++.++|++|+++|+.+++.
T Consensus 101 -------~-----~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~ 137 (294)
T PLN02824 101 -------G-----DPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISL 137 (294)
T ss_pred -------C-----CCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCc
Confidence 4 689999999999999999999999999999887654
No 5
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.74 E-value=1.4e-17 Score=152.44 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=84.0
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
+.||||+||..++...|.. ++..|.+ +++|+++|+||||+|.... ..++.+...+|+.+++++++
T Consensus 25 ~~plvllHG~~~~~~~w~~---~~~~L~~--~~~vi~~Dl~G~G~S~~~~----------~~~~~~~~~~~~~~~i~~l~ 89 (276)
T TIGR02240 25 LTPLLIFNGIGANLELVFP---FIEALDP--DLEVIAFDVPGVGGSSTPR----------HPYRFPGLAKLAARMLDYLD 89 (276)
T ss_pred CCcEEEEeCCCcchHHHHH---HHHHhcc--CceEEEECCCCCCCCCCCC----------CcCcHHHHHHHHHHHHHHhC
Confidence 4699999998887766643 3444544 4689999999999997521 12568899999999999886
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcccc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMF 198 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~ 198 (337)
. .+++|+||||||++|+.++.++|++|+++|+.+++..
T Consensus 90 -------~-----~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~ 127 (276)
T TIGR02240 90 -------Y-----GQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAG 127 (276)
T ss_pred -------c-----CceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCc
Confidence 4 6899999999999999999999999999998876653
No 6
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.72 E-value=1.2e-16 Score=143.81 Aligned_cols=98 Identities=16% Similarity=0.234 Sum_probs=81.8
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
+.||||+||..++...|.. +...|++ +++|+++|+||||.|.+.. .++.++.++|+.++++.++
T Consensus 16 ~~~iv~lhG~~~~~~~~~~---~~~~l~~--~~~vi~~D~~G~G~s~~~~-----------~~~~~~~~~d~~~~l~~l~ 79 (255)
T PRK10673 16 NSPIVLVHGLFGSLDNLGV---LARDLVN--DHDIIQVDMRNHGLSPRDP-----------VMNYPAMAQDLLDTLDALQ 79 (255)
T ss_pred CCCEEEECCCCCchhHHHH---HHHHHhh--CCeEEEECCCCCCCCCCCC-----------CCCHHHHHHHHHHHHHHcC
Confidence 6789999999888766644 3455655 4689999999999997632 2568999999999999876
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecC
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASS 194 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~s 194 (337)
. .+++++||||||++|+.++.++|++|+++++.+
T Consensus 80 -------~-----~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~ 113 (255)
T PRK10673 80 -------I-----EKATFIGHSMGGKAVMALTALAPDRIDKLVAID 113 (255)
T ss_pred -------C-----CceEEEEECHHHHHHHHHHHhCHhhcceEEEEe
Confidence 3 579999999999999999999999999999654
No 7
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.68 E-value=3.4e-16 Score=145.17 Aligned_cols=104 Identities=16% Similarity=0.175 Sum_probs=84.0
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
+.||||+||.+++...|.. ++..|++ .+++|+++|+||||+|.+... ...++.++.++|+.+++++++
T Consensus 46 ~~~lvliHG~~~~~~~w~~---~~~~L~~-~gy~vi~~Dl~G~G~S~~~~~--------~~~~~~~~~a~~l~~~l~~l~ 113 (302)
T PRK00870 46 GPPVLLLHGEPSWSYLYRK---MIPILAA-AGHRVIAPDLIGFGRSDKPTR--------REDYTYARHVEWMRSWFEQLD 113 (302)
T ss_pred CCEEEEECCCCCchhhHHH---HHHHHHh-CCCEEEEECCCCCCCCCCCCC--------cccCCHHHHHHHHHHHHHHcC
Confidence 5689999998777666654 3444544 378999999999999976321 123678999999999998876
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAP 196 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap 196 (337)
. .+++++||||||++|+.++.+||+.|.++++.++.
T Consensus 114 -------~-----~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 149 (302)
T PRK00870 114 -------L-----TDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTG 149 (302)
T ss_pred -------C-----CCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCC
Confidence 3 68999999999999999999999999999987753
No 8
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=99.68 E-value=2.2e-16 Score=146.72 Aligned_cols=169 Identities=24% Similarity=0.318 Sum_probs=132.1
Q ss_pred eeEEeecCCCCCCCCCeEeeEEEEeCcccCCCCCCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCC
Q psy1220 36 KFFDAKLDHFTYVSNQTFPLKYLINDEFWDEDGGAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSL 115 (337)
Q Consensus 36 ~~f~q~~dhf~~~~~~tf~qry~~~~~~~~~~~~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~ 115 (337)
.+|+||+||.++. .+||+||..+..+ +...|.||...|-+-... .. -.++.+-++++-|.+|||+||.|.
T Consensus 34 l~y~QPvDH~~P~-~gtF~QRvtLlHk----~~drPtV~~T~GY~~~~~----p~-r~Ept~Lld~NQl~vEhRfF~~Sr 103 (448)
T PF05576_consen 34 LRYTQPVDHRHPE-KGTFQQRVTLLHK----DFDRPTVLYTEGYNVSTS----PR-RSEPTQLLDGNQLSVEHRFFGPSR 103 (448)
T ss_pred EeeecCCCCCCCC-CCceEEEEEEEEc----CCCCCeEEEecCcccccC----cc-ccchhHhhccceEEEEEeeccCCC
Confidence 3579999999874 8899999988764 225788888776654221 11 235667778889999999999999
Q ss_pred CCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCc
Q psy1220 116 PFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSA 195 (337)
Q Consensus 116 ~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sa 195 (337)
|.+. ++++||+.|+++|...+++.++.- + . .+||--|.|=||+.++.++..||+.|++.|.-.|
T Consensus 104 P~p~-------DW~~Lti~QAA~D~Hri~~A~K~i-----Y---~-~kWISTG~SKGGmTa~y~rrFyP~DVD~tVaYVA 167 (448)
T PF05576_consen 104 PEPA-------DWSYLTIWQAASDQHRIVQAFKPI-----Y---P-GKWISTGGSKGGMTAVYYRRFYPDDVDGTVAYVA 167 (448)
T ss_pred CCCC-------CcccccHhHhhHHHHHHHHHHHhh-----c---c-CCceecCcCCCceeEEEEeeeCCCCCCeeeeeec
Confidence 9643 678899999999999999999864 4 2 6899999999999999999999999999999999
Q ss_pred cccccC-CCCChhHHHHHHHHHHhccCcccHHHHHHHHHHHH
Q psy1220 196 PMFQTN-DLAPCDIYYKEVTKIYRDVSPKCEENIRNSWTFIN 236 (337)
Q Consensus 196 p~~~~~-~~~~~~~~~~~v~~~~~~~~~~c~~~~~~~~~~i~ 236 (337)
|..... +...+..|++.| ..++|.+.++..-+++-
T Consensus 168 P~~~~~~eD~~y~~Fl~~V------Gt~eCR~~l~~~Qre~L 203 (448)
T PF05576_consen 168 PNDVVNREDSRYDRFLEKV------GTAECRDKLNDFQREAL 203 (448)
T ss_pred ccccCcccchhHHHHHHhc------CCHHHHHHHHHHHHHHH
Confidence 987532 222344566555 26789988887666544
No 9
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.68 E-value=1.6e-16 Score=146.66 Aligned_cols=102 Identities=21% Similarity=0.192 Sum_probs=86.0
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
+.||||+||.+++...|.. ++..|++. ++|+++|+||||.|.... ..++.+..++|+.+++++++
T Consensus 27 g~~vvllHG~~~~~~~w~~---~~~~L~~~--~~via~D~~G~G~S~~~~----------~~~~~~~~a~dl~~ll~~l~ 91 (295)
T PRK03592 27 GDPIVFLHGNPTSSYLWRN---IIPHLAGL--GRCLAPDLIGMGASDKPD----------IDYTFADHARYLDAWFDALG 91 (295)
T ss_pred CCEEEEECCCCCCHHHHHH---HHHHHhhC--CEEEEEcCCCCCCCCCCC----------CCCCHHHHHHHHHHHHHHhC
Confidence 6799999999888777754 45567665 389999999999997632 12578999999999999887
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCccc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPM 197 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~ 197 (337)
. .+++++||||||.+|+.++.+||++|+++|+.+++.
T Consensus 92 -------~-----~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~ 128 (295)
T PRK03592 92 -------L-----DDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIV 128 (295)
T ss_pred -------C-----CCeEEEEECHHHHHHHHHHHhChhheeEEEEECCCC
Confidence 4 689999999999999999999999999999888644
No 10
>PLN02965 Probable pheophorbidase
Probab=99.66 E-value=4.1e-16 Score=141.07 Aligned_cols=104 Identities=17% Similarity=0.089 Sum_probs=83.5
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
..+|||+||.+.+...|.. .+..|++ .+++|+++|+||||.|..... ..++.++.++|+.++++.+.
T Consensus 3 ~~~vvllHG~~~~~~~w~~---~~~~L~~-~~~~via~Dl~G~G~S~~~~~---------~~~~~~~~a~dl~~~l~~l~ 69 (255)
T PLN02965 3 EIHFVFVHGASHGAWCWYK---LATLLDA-AGFKSTCVDLTGAGISLTDSN---------TVSSSDQYNRPLFALLSDLP 69 (255)
T ss_pred ceEEEEECCCCCCcCcHHH---HHHHHhh-CCceEEEecCCcCCCCCCCcc---------ccCCHHHHHHHHHHHHHhcC
Confidence 3569999999888776654 3455643 368999999999999964211 23668999999999999876
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAP 196 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap 196 (337)
.. .+++++||||||++++.++.++|++|.++|+.++.
T Consensus 70 ~~-----------~~~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~ 106 (255)
T PLN02965 70 PD-----------HKVILVGHSIGGGSVTEALCKFTDKISMAIYVAAA 106 (255)
T ss_pred CC-----------CCEEEEecCcchHHHHHHHHhCchheeEEEEEccc
Confidence 21 48999999999999999999999999999977654
No 11
>PRK06489 hypothetical protein; Provisional
Probab=99.66 E-value=1.5e-15 Score=144.56 Aligned_cols=111 Identities=16% Similarity=0.161 Sum_probs=78.5
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHH------hcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAK------RFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVD 142 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~------~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~ 142 (337)
+.||||+||+.++...|.. ..+...+.. ..+++||++|+||||+|....+.. ..+...++.++.++|+.+
T Consensus 69 gpplvllHG~~~~~~~~~~-~~~~~~l~~~~~~l~~~~~~Via~Dl~GhG~S~~p~~~~---~~~~~~~~~~~~a~~~~~ 144 (360)
T PRK06489 69 DNAVLVLHGTGGSGKSFLS-PTFAGELFGPGQPLDASKYFIILPDGIGHGKSSKPSDGL---RAAFPRYDYDDMVEAQYR 144 (360)
T ss_pred CCeEEEeCCCCCchhhhcc-chhHHHhcCCCCcccccCCEEEEeCCCCCCCCCCCCcCC---CCCCCcccHHHHHHHHHH
Confidence 4689999999988766641 112222310 235789999999999997532110 001223678888888877
Q ss_pred HH-HHHHhhhhhhccCCCCCCCE-EEEecchhHHHHHHHHHhCCCceeEeeecCc
Q psy1220 143 VI-QSLEDASRLRIGAAFKPHPV-IAFGGSYGGMLAFWLRLKYPHIVQGALASSA 195 (337)
Q Consensus 143 ~i-~~l~~~~~~~~~~~~~~~~~-il~G~S~GG~la~~~~~~~P~~v~~~v~~sa 195 (337)
++ ++++ + .++ +++||||||++|+.++.+||++|+++|+.++
T Consensus 145 ~l~~~lg-------i-----~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s 187 (360)
T PRK06489 145 LVTEGLG-------V-----KHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMAS 187 (360)
T ss_pred HHHHhcC-------C-----CceeEEEEECHHHHHHHHHHHhCchhhheeeeecc
Confidence 54 5555 3 566 4899999999999999999999999997654
No 12
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.66 E-value=5.2e-16 Score=140.19 Aligned_cols=95 Identities=23% Similarity=0.265 Sum_probs=72.7
Q ss_pred CC-cEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHH
Q psy1220 69 GA-PVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSL 147 (337)
Q Consensus 69 ~~-pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l 147 (337)
|. ||||+||.+++...|.. ++..|.+. ++|+++|+||||.|.... .++.++.++|+.+ +
T Consensus 12 g~~~ivllHG~~~~~~~w~~---~~~~L~~~--~~vi~~Dl~G~G~S~~~~-----------~~~~~~~~~~l~~----~ 71 (256)
T PRK10349 12 GNVHLVLLHGWGLNAEVWRC---IDEELSSH--FTLHLVDLPGFGRSRGFG-----------ALSLADMAEAVLQ----Q 71 (256)
T ss_pred CCCeEEEECCCCCChhHHHH---HHHHHhcC--CEEEEecCCCCCCCCCCC-----------CCCHHHHHHHHHh----c
Confidence 44 59999998888777754 34556543 789999999999997421 2456666665442 2
Q ss_pred HhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCc
Q psy1220 148 EDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSA 195 (337)
Q Consensus 148 ~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sa 195 (337)
. . .+++++||||||.+|+.++.++|++|+++|+.++
T Consensus 72 ~-------~-----~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~ 107 (256)
T PRK10349 72 A-------P-----DKAIWLGWSLGGLVASQIALTHPERVQALVTVAS 107 (256)
T ss_pred C-------C-----CCeEEEEECHHHHHHHHHHHhChHhhheEEEecC
Confidence 2 2 6899999999999999999999999999997654
No 13
>KOG4178|consensus
Probab=99.65 E-value=7.6e-16 Score=140.00 Aligned_cols=106 Identities=24% Similarity=0.329 Sum_probs=89.7
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
|..|+++||.+.+...|.. .+..++.. |++|+++|+||||.|+... ....+|.+..++|+..++++++
T Consensus 44 gP~illlHGfPe~wyswr~---q~~~la~~-~~rviA~DlrGyG~Sd~P~--------~~~~Yt~~~l~~di~~lld~Lg 111 (322)
T KOG4178|consen 44 GPIVLLLHGFPESWYSWRH---QIPGLASR-GYRVIAPDLRGYGFSDAPP--------HISEYTIDELVGDIVALLDHLG 111 (322)
T ss_pred CCEEEEEccCCccchhhhh---hhhhhhhc-ceEEEecCCCCCCCCCCCC--------CcceeeHHHHHHHHHHHHHHhc
Confidence 4557889998888655654 35556654 5899999999999999753 4456889999999999999999
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcccc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMF 198 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~ 198 (337)
+ ++++++||+||+++|..++..||++|+++|..+.|..
T Consensus 112 -------~-----~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~ 149 (322)
T KOG4178|consen 112 -------L-----KKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFP 149 (322)
T ss_pred -------c-----ceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCC
Confidence 4 7999999999999999999999999999998887765
No 14
>PLN02578 hydrolase
Probab=99.64 E-value=4e-16 Score=148.15 Aligned_cols=102 Identities=20% Similarity=0.219 Sum_probs=82.4
Q ss_pred CCCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHH
Q psy1220 68 GGAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSL 147 (337)
Q Consensus 68 ~~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l 147 (337)
++.||||+||.+++...|.. .+..|++ +++|+++|+||||.|.... ..++.+...+|+.++++.+
T Consensus 85 ~g~~vvliHG~~~~~~~w~~---~~~~l~~--~~~v~~~D~~G~G~S~~~~----------~~~~~~~~a~~l~~~i~~~ 149 (354)
T PLN02578 85 EGLPIVLIHGFGASAFHWRY---NIPELAK--KYKVYALDLLGFGWSDKAL----------IEYDAMVWRDQVADFVKEV 149 (354)
T ss_pred CCCeEEEECCCCCCHHHHHH---HHHHHhc--CCEEEEECCCCCCCCCCcc----------cccCHHHHHHHHHHHHHHh
Confidence 36799999998887666654 2445654 4789999999999997531 2356888899999999887
Q ss_pred HhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcc
Q psy1220 148 EDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAP 196 (337)
Q Consensus 148 ~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap 196 (337)
. . .+++++||||||++|+.++.++|++|+++++.+++
T Consensus 150 ~-------~-----~~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~ 186 (354)
T PLN02578 150 V-------K-----EPAVLVGNSLGGFTALSTAVGYPELVAGVALLNSA 186 (354)
T ss_pred c-------c-----CCeEEEEECHHHHHHHHHHHhChHhcceEEEECCC
Confidence 6 2 68999999999999999999999999999976543
No 15
>KOG4409|consensus
Probab=99.64 E-value=2.9e-15 Score=136.75 Aligned_cols=106 Identities=22% Similarity=0.227 Sum_probs=79.2
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
..|+||+||-+++...|..| +..|++. ..|+++|++|+|.|+... .+.+.. --.++.++-+++.....+
T Consensus 90 ~~plVliHGyGAg~g~f~~N---f~~La~~--~~vyaiDllG~G~SSRP~-F~~d~~-----~~e~~fvesiE~WR~~~~ 158 (365)
T KOG4409|consen 90 KTPLVLIHGYGAGLGLFFRN---FDDLAKI--RNVYAIDLLGFGRSSRPK-FSIDPT-----TAEKEFVESIEQWRKKMG 158 (365)
T ss_pred CCcEEEEeccchhHHHHHHh---hhhhhhc--CceEEecccCCCCCCCCC-CCCCcc-----cchHHHHHHHHHHHHHcC
Confidence 67999999988877777665 6788885 459999999999998632 221110 002345555554444444
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCccc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPM 197 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~ 197 (337)
+ .|.+|+|||+||+||+.+|+|||++|..+|+.++--
T Consensus 159 -------L-----~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~G 195 (365)
T KOG4409|consen 159 -------L-----EKMILVGHSFGGYLAAKYALKYPERVEKLILVSPWG 195 (365)
T ss_pred -------C-----cceeEeeccchHHHHHHHHHhChHhhceEEEecccc
Confidence 4 799999999999999999999999999999888443
No 16
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.63 E-value=1.5e-15 Score=138.79 Aligned_cols=106 Identities=15% Similarity=0.158 Sum_probs=78.6
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
+.||||+||.+++...|......+..+++ .+++|+++|+||||.|.+..... .. ....++|+.++++.++
T Consensus 30 ~~~ivllHG~~~~~~~~~~~~~~~~~l~~-~~~~vi~~D~~G~G~S~~~~~~~--------~~-~~~~~~~l~~~l~~l~ 99 (282)
T TIGR03343 30 GEAVIMLHGGGPGAGGWSNYYRNIGPFVD-AGYRVILKDSPGFNKSDAVVMDE--------QR-GLVNARAVKGLMDALD 99 (282)
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHHHh-CCCEEEEECCCCCCCCCCCcCcc--------cc-cchhHHHHHHHHHHcC
Confidence 67899999987776656432112333443 37899999999999997532110 01 1134678888888776
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAP 196 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap 196 (337)
. .+++++||||||++++.++.++|++++++|+.+++
T Consensus 100 -------~-----~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~ 135 (282)
T TIGR03343 100 -------I-----EKAHLVGNSMGGATALNFALEYPDRIGKLILMGPG 135 (282)
T ss_pred -------C-----CCeeEEEECchHHHHHHHHHhChHhhceEEEECCC
Confidence 3 69999999999999999999999999999987754
No 17
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.63 E-value=5.3e-15 Score=138.94 Aligned_cols=110 Identities=18% Similarity=0.248 Sum_probs=81.9
Q ss_pred CcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHh
Q psy1220 70 APVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLED 149 (337)
Q Consensus 70 ~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~ 149 (337)
+.|||+||...+.. |... .+...|++ .|++|+++|+||||.|..... ...+.+..++|+.++++.++.
T Consensus 60 ~~VvllHG~~~~~~-~~~~-~~~~~L~~-~Gy~V~~~D~rGhG~S~~~~~---------~~~~~~~~~~D~~~~i~~l~~ 127 (330)
T PLN02298 60 ALIFMVHGYGNDIS-WTFQ-STAIFLAQ-MGFACFALDLEGHGRSEGLRA---------YVPNVDLVVEDCLSFFNSVKQ 127 (330)
T ss_pred eEEEEEcCCCCCcc-eehh-HHHHHHHh-CCCEEEEecCCCCCCCCCccc---------cCCCHHHHHHHHHHHHHHHHh
Confidence 45899999865532 2211 12334544 489999999999999974221 123578899999999999985
Q ss_pred hhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCccc
Q psy1220 150 ASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPM 197 (337)
Q Consensus 150 ~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~ 197 (337)
. ......|++|+||||||++|+.++.++|++|+++|+.++..
T Consensus 128 ~------~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~ 169 (330)
T PLN02298 128 R------EEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMC 169 (330)
T ss_pred c------ccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccc
Confidence 3 11223589999999999999999999999999999887654
No 18
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.63 E-value=2.3e-15 Score=130.78 Aligned_cols=102 Identities=26% Similarity=0.332 Sum_probs=84.8
Q ss_pred EEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhh
Q psy1220 72 VFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDAS 151 (337)
Q Consensus 72 ivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~ 151 (337)
|||+||..++...|.. ++..|+ .|++|+++|+||||.|.+..+ ....+.++.++|+.++++.+.
T Consensus 1 vv~~hG~~~~~~~~~~---~~~~l~--~~~~v~~~d~~G~G~s~~~~~--------~~~~~~~~~~~~l~~~l~~~~--- 64 (228)
T PF12697_consen 1 VVFLHGFGGSSESWDP---LAEALA--RGYRVIAFDLPGHGRSDPPPD--------YSPYSIEDYAEDLAELLDALG--- 64 (228)
T ss_dssp EEEE-STTTTGGGGHH---HHHHHH--TTSEEEEEECTTSTTSSSHSS--------GSGGSHHHHHHHHHHHHHHTT---
T ss_pred eEEECCCCCCHHHHHH---HHHHHh--CCCEEEEEecCCccccccccc--------cCCcchhhhhhhhhhcccccc---
Confidence 7999999999877765 455564 488999999999999986421 234678999999999998877
Q ss_pred hhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcccc
Q psy1220 152 RLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMF 198 (337)
Q Consensus 152 ~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~ 198 (337)
. .+++++|||+||.+++.++.++|+.|+++|+.+++..
T Consensus 65 ----~-----~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~ 102 (228)
T PF12697_consen 65 ----I-----KKVILVGHSMGGMIALRLAARYPDRVKGLVLLSPPPP 102 (228)
T ss_dssp ----T-----SSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESESSS
T ss_pred ----c-----ccccccccccccccccccccccccccccceeeccccc
Confidence 3 6899999999999999999999999999998887653
No 19
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.63 E-value=3e-15 Score=135.50 Aligned_cols=106 Identities=23% Similarity=0.242 Sum_probs=83.6
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
+.||||+||+.++...|.. .+..+.++.|++|+++|+||||.|..... ....++.++.++|+.++++.++
T Consensus 25 ~~~vl~~hG~~g~~~~~~~---~~~~~l~~~g~~vi~~d~~G~G~s~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 94 (288)
T TIGR01250 25 KIKLLLLHGGPGMSHEYLE---NLRELLKEEGREVIMYDQLGCGYSDQPDD-------SDELWTIDYFVDELEEVREKLG 94 (288)
T ss_pred CCeEEEEcCCCCccHHHHH---HHHHHHHhcCCEEEEEcCCCCCCCCCCCc-------ccccccHHHHHHHHHHHHHHcC
Confidence 5689999998777554443 24555555578999999999999975321 1114678999999988888766
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAP 196 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap 196 (337)
. .+++++||||||.+++.++.++|+.+.++++.++.
T Consensus 95 -------~-----~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~ 130 (288)
T TIGR01250 95 -------L-----DKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSML 130 (288)
T ss_pred -------C-----CcEEEEEeehHHHHHHHHHHhCccccceeeEeccc
Confidence 3 57999999999999999999999999999977643
No 20
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.62 E-value=9.4e-15 Score=130.36 Aligned_cols=102 Identities=21% Similarity=0.205 Sum_probs=81.7
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
+.+|||+||..++...|.. .+..+.+ +++|+++|+||||.|.... ...++.++.++|+.++++.++
T Consensus 13 ~~~iv~lhG~~~~~~~~~~---~~~~l~~--~~~vi~~D~~G~G~S~~~~---------~~~~~~~~~~~~~~~~i~~~~ 78 (257)
T TIGR03611 13 APVVVLSSGLGGSGSYWAP---QLDVLTQ--RFHVVTYDHRGTGRSPGEL---------PPGYSIAHMADDVLQLLDALN 78 (257)
T ss_pred CCEEEEEcCCCcchhHHHH---HHHHHHh--ccEEEEEcCCCCCCCCCCC---------cccCCHHHHHHHHHHHHHHhC
Confidence 5679999998887666543 2333443 5789999999999997532 123678999999999998776
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAP 196 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap 196 (337)
. .+++++||||||++|..++.++|+.|.++|+.++.
T Consensus 79 -------~-----~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~ 114 (257)
T TIGR03611 79 -------I-----ERFHFVGHALGGLIGLQLALRYPERLLSLVLINAW 114 (257)
T ss_pred -------C-----CcEEEEEechhHHHHHHHHHHChHHhHHheeecCC
Confidence 3 68999999999999999999999999999977653
No 21
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.62 E-value=1.9e-15 Score=134.94 Aligned_cols=99 Identities=14% Similarity=0.048 Sum_probs=80.2
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
+.||||+||.+++...|.. ++..+ + +++|+++|+||||.|.+... .+.++.++|+.+++++++
T Consensus 2 ~p~vvllHG~~~~~~~w~~---~~~~l-~--~~~vi~~D~~G~G~S~~~~~-----------~~~~~~~~~l~~~l~~~~ 64 (242)
T PRK11126 2 LPWLVFLHGLLGSGQDWQP---VGEAL-P--DYPRLYIDLPGHGGSAAISV-----------DGFADVSRLLSQTLQSYN 64 (242)
T ss_pred CCEEEEECCCCCChHHHHH---HHHHc-C--CCCEEEecCCCCCCCCCccc-----------cCHHHHHHHHHHHHHHcC
Confidence 4579999999888776654 23334 2 57899999999999975321 258889999999998775
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCc-eeEeeecCcc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHI-VQGALASSAP 196 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~-v~~~v~~sap 196 (337)
. .+++++||||||.+|+.++.++|+. |+++++.+++
T Consensus 65 -------~-----~~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~ 101 (242)
T PRK11126 65 -------I-----LPYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGN 101 (242)
T ss_pred -------C-----CCeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCC
Confidence 3 7999999999999999999999765 9999987655
No 22
>PHA02857 monoglyceride lipase; Provisional
Probab=99.62 E-value=6.4e-15 Score=134.54 Aligned_cols=107 Identities=17% Similarity=0.161 Sum_probs=80.9
Q ss_pred cEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhh
Q psy1220 71 PVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDA 150 (337)
Q Consensus 71 pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~ 150 (337)
.||++||..++...|.. +...|++ .|++|+++|+||||.|.+.. . ..-+....++|+...++.++..
T Consensus 27 ~v~llHG~~~~~~~~~~---~~~~l~~-~g~~via~D~~G~G~S~~~~-~--------~~~~~~~~~~d~~~~l~~~~~~ 93 (276)
T PHA02857 27 LVFISHGAGEHSGRYEE---LAENISS-LGILVFSHDHIGHGRSNGEK-M--------MIDDFGVYVRDVVQHVVTIKST 93 (276)
T ss_pred EEEEeCCCccccchHHH---HHHHHHh-CCCEEEEccCCCCCCCCCcc-C--------CcCCHHHHHHHHHHHHHHHHhh
Confidence 35556998777666644 3444554 48899999999999997521 1 1124667788888888877643
Q ss_pred hhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcccc
Q psy1220 151 SRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMF 198 (337)
Q Consensus 151 ~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~ 198 (337)
+ +..|++++||||||++|+.++.++|+.++++|+.+++..
T Consensus 94 -----~---~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~ 133 (276)
T PHA02857 94 -----Y---PGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVN 133 (276)
T ss_pred -----C---CCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccc
Confidence 3 336899999999999999999999999999998886543
No 23
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.61 E-value=5.4e-15 Score=140.09 Aligned_cols=110 Identities=24% Similarity=0.316 Sum_probs=83.0
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
+++|||+||..++...|.. .+...|++ .|++|+++|+||||+|..... ...+.++.++|+.++++.++
T Consensus 87 ~~~iv~lHG~~~~~~~~~~--~~~~~l~~-~g~~v~~~D~~G~G~S~~~~~---------~~~~~~~~~~dv~~~l~~l~ 154 (349)
T PLN02385 87 KAAVCFCHGYGDTCTFFFE--GIARKIAS-SGYGVFAMDYPGFGLSEGLHG---------YIPSFDDLVDDVIEHYSKIK 154 (349)
T ss_pred CeEEEEECCCCCccchHHH--HHHHHHHh-CCCEEEEecCCCCCCCCCCCC---------CcCCHHHHHHHHHHHHHHHH
Confidence 4569999998776543322 12344554 489999999999999975311 11358889999999999887
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAP 196 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap 196 (337)
.+ ...+..+++|+||||||++|+.++.++|+.++++|+.++.
T Consensus 155 ~~------~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~ 196 (349)
T PLN02385 155 GN------PEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPM 196 (349)
T ss_pred hc------cccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEeccc
Confidence 43 1123358999999999999999999999999999988743
No 24
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.61 E-value=5.6e-15 Score=130.67 Aligned_cols=102 Identities=19% Similarity=0.191 Sum_probs=79.9
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
+.+|||+||.+++...|.. +...+. .+++|+++|+||||.|.... ..++.++.++|+.++++.+.
T Consensus 13 ~~~li~~hg~~~~~~~~~~---~~~~l~--~~~~v~~~d~~G~G~s~~~~----------~~~~~~~~~~~~~~~i~~~~ 77 (251)
T TIGR02427 13 APVLVFINSLGTDLRMWDP---VLPALT--PDFRVLRYDKRGHGLSDAPE----------GPYSIEDLADDVLALLDHLG 77 (251)
T ss_pred CCeEEEEcCcccchhhHHH---HHHHhh--cccEEEEecCCCCCCCCCCC----------CCCCHHHHHHHHHHHHHHhC
Confidence 3457889997777655543 233343 36889999999999996421 23578899999999988775
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCccc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPM 197 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~ 197 (337)
. .+++++||||||++++.++.++|+.++++++.+++.
T Consensus 78 -------~-----~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~ 114 (251)
T TIGR02427 78 -------I-----ERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAA 114 (251)
T ss_pred -------C-----CceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCcc
Confidence 3 589999999999999999999999999999777543
No 25
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.61 E-value=5.7e-15 Score=144.24 Aligned_cols=107 Identities=19% Similarity=0.224 Sum_probs=83.7
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHH--hcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHH-HHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAK--RFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFV-DVIQ 145 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~--~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~-~~i~ 145 (337)
+.||||+||..++...|... ++..+++ +.+++|+++|+||||+|....+ ..++.++.++|+. .+++
T Consensus 201 k~~VVLlHG~~~s~~~W~~~--~~~~L~~~~~~~yrVia~Dl~G~G~S~~p~~---------~~ytl~~~a~~l~~~ll~ 269 (481)
T PLN03087 201 KEDVLFIHGFISSSAFWTET--LFPNFSDAAKSTYRLFAVDLLGFGRSPKPAD---------SLYTLREHLEMIERSVLE 269 (481)
T ss_pred CCeEEEECCCCccHHHHHHH--HHHHHHHHhhCCCEEEEECCCCCCCCcCCCC---------CcCCHHHHHHHHHHHHHH
Confidence 46899999998887666542 1233442 3478999999999999975321 2367888999884 6777
Q ss_pred HHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcccc
Q psy1220 146 SLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMF 198 (337)
Q Consensus 146 ~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~ 198 (337)
.++ . .+++++||||||++|+.++.+||++|+++|+.++|..
T Consensus 270 ~lg-------~-----~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~ 310 (481)
T PLN03087 270 RYK-------V-----KSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPYY 310 (481)
T ss_pred HcC-------C-----CCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCcc
Confidence 665 3 6899999999999999999999999999998887654
No 26
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.60 E-value=3.3e-15 Score=142.26 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=83.0
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
+.||||+||.+++...|.. ++..|++ +++|+++|+||||+|.+..+ ..++.+..++|+.++++.+.
T Consensus 88 gp~lvllHG~~~~~~~w~~---~~~~L~~--~~~via~Dl~G~G~S~~~~~---------~~~~~~~~a~~l~~~l~~l~ 153 (360)
T PLN02679 88 GPPVLLVHGFGASIPHWRR---NIGVLAK--NYTVYAIDLLGFGASDKPPG---------FSYTMETWAELILDFLEEVV 153 (360)
T ss_pred CCeEEEECCCCCCHHHHHH---HHHHHhc--CCEEEEECCCCCCCCCCCCC---------ccccHHHHHHHHHHHHHHhc
Confidence 3789999999888776655 2444544 57899999999999976321 13578899999999999876
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHH-hCCCceeEeeecCccc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRL-KYPHIVQGALASSAPM 197 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~-~~P~~v~~~v~~sap~ 197 (337)
. .+++++||||||.+++.++. ++|++|+++|+.+++.
T Consensus 154 -------~-----~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~ 191 (360)
T PLN02679 154 -------Q-----KPTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAG 191 (360)
T ss_pred -------C-----CCeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCcc
Confidence 3 68999999999999998886 5899999999877653
No 27
>KOG2382|consensus
Probab=99.59 E-value=1.8e-14 Score=131.05 Aligned_cols=220 Identities=15% Similarity=0.157 Sum_probs=149.0
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
..|++++||--|+...|.. +-..|++..+..|+++|.|.||.|.... ..+.+.+.+|+..|++..+
T Consensus 52 ~Pp~i~lHGl~GS~~Nw~s---v~k~Ls~~l~~~v~~vd~RnHG~Sp~~~-----------~h~~~~ma~dv~~Fi~~v~ 117 (315)
T KOG2382|consen 52 APPAIILHGLLGSKENWRS---VAKNLSRKLGRDVYAVDVRNHGSSPKIT-----------VHNYEAMAEDVKLFIDGVG 117 (315)
T ss_pred CCceEEecccccCCCCHHH---HHHHhcccccCceEEEecccCCCCcccc-----------ccCHHHHHHHHHHHHHHcc
Confidence 5789999999999888765 4567888889999999999999997543 3457889999999999987
Q ss_pred hhhhhhccCCCCCCCEEEEecchhH-HHHHHHHHhCCCceeEee-ecCccccccCCCCChhHHHHHHHHHHhccCccc--
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGG-MLAFWLRLKYPHIVQGAL-ASSAPMFQTNDLAPCDIYYKEVTKIYRDVSPKC-- 224 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG-~la~~~~~~~P~~v~~~v-~~sap~~~~~~~~~~~~~~~~v~~~~~~~~~~c-- 224 (337)
.. . ...+++++|||||| -+++....++|+.+..+| ...+|........++.++++.+.+ .+.+
T Consensus 118 ~~-----~---~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~-----~d~~~~ 184 (315)
T KOG2382|consen 118 GS-----T---RLDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQ-----LDLSIG 184 (315)
T ss_pred cc-----c---ccCCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHh-----cccccc
Confidence 32 1 22699999999999 888889999999999888 555564222222344455554432 2333
Q ss_pred -HHHHHHHHHHHHHhhhCCchhHHHHHhcCCCCCCCC----HHHHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCCchh
Q psy1220 225 -EENIRNSWTFINTELQTDSGRVEFSREWNLCSSLKT----QVDVAIFKRYLSDMYTTMAMTNYPYPSNFLTPLPGNPVK 299 (337)
Q Consensus 225 -~~~~~~~~~~i~~~~~~~~~~~~l~~~f~~~~~~~~----~~di~~~~~~~~~~~~~~am~~y~~~~~~l~~~~~~pv~ 299 (337)
...++.+.+.+.+.......++.+...++. .+... .-++..+.+++... -+..|+-.-+. .+.. .||+
T Consensus 185 ~~~~rke~~~~l~~~~~d~~~~~fi~~nl~~-~~~~~s~~w~~nl~~i~~~~~~~----~~~s~~~~l~~-~~~~-~pvl 257 (315)
T KOG2382|consen 185 VSRGRKEALKSLIEVGFDNLVRQFILTNLKK-SPSDGSFLWRVNLDSIASLLDEY----EILSYWADLED-GPYT-GPVL 257 (315)
T ss_pred ccccHHHHHHHHHHHhcchHHHHHHHHhcCc-CCCCCceEEEeCHHHHHHHHHHH----Hhhcccccccc-cccc-ccee
Confidence 455666666666665554557888888874 11111 11122222222121 12333322221 2222 7899
Q ss_pred hHHHHHhhccchHHHHHHHhcCC
Q psy1220 300 VDVAIFKRYLSDMYTTMAMTNYP 322 (337)
Q Consensus 300 ~icg~~~~~~~d~y~~~a~~~~p 322 (337)
.+||..+.+.++.....+...+|
T Consensus 258 fi~g~~S~fv~~~~~~~~~~~fp 280 (315)
T KOG2382|consen 258 FIKGLQSKFVPDEHYPRMEKIFP 280 (315)
T ss_pred EEecCCCCCcChhHHHHHHHhcc
Confidence 99999999999998888888888
No 28
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.59 E-value=7e-15 Score=134.70 Aligned_cols=104 Identities=15% Similarity=0.131 Sum_probs=81.3
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
+.+|||+||..++.+.|.. +...|. +.|++|+++|+||||.|.+... ...+.++.++++.++++.+.
T Consensus 18 ~p~vvliHG~~~~~~~w~~---~~~~L~-~~g~~vi~~dl~g~G~s~~~~~---------~~~~~~~~~~~l~~~i~~l~ 84 (273)
T PLN02211 18 PPHFVLIHGISGGSWCWYK---IRCLME-NSGYKVTCIDLKSAGIDQSDAD---------SVTTFDEYNKPLIDFLSSLP 84 (273)
T ss_pred CCeEEEECCCCCCcCcHHH---HHHHHH-hCCCEEEEecccCCCCCCCCcc---------cCCCHHHHHHHHHHHHHhcC
Confidence 5579999998888776654 233344 3488999999999998854211 22568888889888888764
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAP 196 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap 196 (337)
. ..+++++||||||+++..++.++|++|+++|+.++.
T Consensus 85 ~-----------~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~ 121 (273)
T PLN02211 85 E-----------NEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAAT 121 (273)
T ss_pred C-----------CCCEEEEEECchHHHHHHHHHhChhheeEEEEeccc
Confidence 2 168999999999999999999999999999977653
No 29
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.59 E-value=5.6e-15 Score=136.18 Aligned_cols=103 Identities=14% Similarity=0.186 Sum_probs=79.7
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
+.||||+||.+.+...|.. ++..|.+ +++|+++|+||||.|....+ ..++.+...+++.++++++.
T Consensus 34 ~~~iv~lHG~~~~~~~~~~---~~~~l~~--~~~vi~~D~~G~G~S~~~~~---------~~~~~~~~~~~~~~~~~~~~ 99 (286)
T PRK03204 34 GPPILLCHGNPTWSFLYRD---IIVALRD--RFRCVAPDYLGFGLSERPSG---------FGYQIDEHARVIGEFVDHLG 99 (286)
T ss_pred CCEEEEECCCCccHHHHHH---HHHHHhC--CcEEEEECCCCCCCCCCCCc---------cccCHHHHHHHHHHHHHHhC
Confidence 6789999998765444433 2333433 47899999999999975321 12557888888888887765
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCccc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPM 197 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~ 197 (337)
. .+++++||||||.+|..++.++|++|+++|+.+++.
T Consensus 100 -------~-----~~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~ 136 (286)
T PRK03204 100 -------L-----DRYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWF 136 (286)
T ss_pred -------C-----CCEEEEEECccHHHHHHHHHhChhheeEEEEECccc
Confidence 3 689999999999999999999999999999876553
No 30
>KOG1455|consensus
Probab=99.59 E-value=2.9e-14 Score=127.96 Aligned_cols=142 Identities=20% Similarity=0.191 Sum_probs=97.1
Q ss_pred eecCCCCCCCCCeEeeEEEEeCcccCCCCCCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCC
Q psy1220 40 AKLDHFTYVSNQTFPLKYLINDEFWDEDGGAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGP 119 (337)
Q Consensus 40 q~~dhf~~~~~~tf~qry~~~~~~~~~~~~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~ 119 (337)
+...+|...+..++.-++|....-. ++ .+-|+++||.++....... .+...|++ .|+.|+++||+|||+|+....
T Consensus 27 ~~~~~~~n~rG~~lft~~W~p~~~~-~p-r~lv~~~HG~g~~~s~~~~--~~a~~l~~-~g~~v~a~D~~GhG~SdGl~~ 101 (313)
T KOG1455|consen 27 YSESFFTNPRGAKLFTQSWLPLSGT-EP-RGLVFLCHGYGEHSSWRYQ--STAKRLAK-SGFAVYAIDYEGHGRSDGLHA 101 (313)
T ss_pred eeeeeEEcCCCCEeEEEecccCCCC-CC-ceEEEEEcCCcccchhhHH--HHHHHHHh-CCCeEEEeeccCCCcCCCCcc
Confidence 3344444334434444444432211 22 4568999996665433322 13444554 488999999999999986432
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCccccc
Q psy1220 120 KSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQ 199 (337)
Q Consensus 120 ~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~~ 199 (337)
. --+.+..++|+..+.+.++.+ ...+..|..++||||||+|++.++.+.|+..+|+|+++ |++.
T Consensus 102 y---------i~~~d~~v~D~~~~~~~i~~~------~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilva-Pmc~ 165 (313)
T KOG1455|consen 102 Y---------VPSFDLVVDDVISFFDSIKER------EENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVA-PMCK 165 (313)
T ss_pred c---------CCcHHHHHHHHHHHHHHHhhc------cccCCCCeeeeecCcchHHHHHHHhhCCcccccceeee-cccc
Confidence 1 134788999999999987754 23455799999999999999999999999999999876 6555
Q ss_pred cCC
Q psy1220 200 TND 202 (337)
Q Consensus 200 ~~~ 202 (337)
..+
T Consensus 166 i~~ 168 (313)
T KOG1455|consen 166 ISE 168 (313)
T ss_pred cCC
Confidence 443
No 31
>PRK10749 lysophospholipase L2; Provisional
Probab=99.59 E-value=1.3e-14 Score=136.56 Aligned_cols=112 Identities=15% Similarity=0.175 Sum_probs=83.0
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
+++|||+||..++...|.. +...++ +.|++|+++|+||||.|.+..+.. ......+.+..++|+.++++.+.
T Consensus 54 ~~~vll~HG~~~~~~~y~~---~~~~l~-~~g~~v~~~D~~G~G~S~~~~~~~----~~~~~~~~~~~~~d~~~~~~~~~ 125 (330)
T PRK10749 54 DRVVVICPGRIESYVKYAE---LAYDLF-HLGYDVLIIDHRGQGRSGRLLDDP----HRGHVERFNDYVDDLAAFWQQEI 125 (330)
T ss_pred CcEEEEECCccchHHHHHH---HHHHHH-HCCCeEEEEcCCCCCCCCCCCCCC----CcCccccHHHHHHHHHHHHHHHH
Confidence 5679999997655433333 233344 458999999999999997532110 01112468999999999999875
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAP 196 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap 196 (337)
.. . +..|++++||||||++++.++.++|+.++++|++++.
T Consensus 126 ~~-----~---~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~ 165 (330)
T PRK10749 126 QP-----G---PYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPM 165 (330)
T ss_pred hc-----C---CCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECch
Confidence 32 2 3368999999999999999999999999999988754
No 32
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.58 E-value=1.6e-14 Score=131.13 Aligned_cols=103 Identities=18% Similarity=0.159 Sum_probs=83.3
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
+.+|||+||.+++...|.. ++..|++ +++|+++|+||||.|.+... ..++.+..++|+.++++.++
T Consensus 28 ~~~vv~~hG~~~~~~~~~~---~~~~l~~--~~~vi~~D~~G~G~S~~~~~---------~~~~~~~~~~~l~~~i~~~~ 93 (278)
T TIGR03056 28 GPLLLLLHGTGASTHSWRD---LMPPLAR--SFRVVAPDLPGHGFTRAPFR---------FRFTLPSMAEDLSALCAAEG 93 (278)
T ss_pred CCeEEEEcCCCCCHHHHHH---HHHHHhh--CcEEEeecCCCCCCCCCccc---------cCCCHHHHHHHHHHHHHHcC
Confidence 5689999999888776654 3555655 47899999999999975321 23578999999999988765
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCccc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPM 197 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~ 197 (337)
. .+++++||||||++++.++.++|++++++++.+++.
T Consensus 94 -------~-----~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~ 130 (278)
T TIGR03056 94 -------L-----SPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAAL 130 (278)
T ss_pred -------C-----CCceEEEECccHHHHHHHHHhCCcccceEEEEcCcc
Confidence 3 588999999999999999999999999999776554
No 33
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.56 E-value=5.8e-15 Score=139.56 Aligned_cols=104 Identities=20% Similarity=0.218 Sum_probs=77.0
Q ss_pred CCcEEEEeCCCCCccchhh-----hhHHHHHHHH------hcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAE-----NLGFLWESAK------RFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTL 137 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~-----~~~~~~~la~------~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~ 137 (337)
+.|+||+||+.++...+.. ..++|..+.. .-+++||++|+||||.|.+. .++.+..+
T Consensus 57 ~~p~vll~g~~~~~~~~~~~~~~~~~~~w~~~v~~~~~L~~~~~~Vi~~Dl~G~g~s~~~------------~~~~~~~a 124 (343)
T PRK08775 57 GAPVVFVAGGISAHRHVAATATFPEKGWWEGLVGSGRALDPARFRLLAFDFIGADGSLDV------------PIDTADQA 124 (343)
T ss_pred CCCEEEEecCCCcccccccccCCCCCCcchhccCCCCccCccccEEEEEeCCCCCCCCCC------------CCCHHHHH
Confidence 5689999998887653110 0111222221 12578999999999988531 14578889
Q ss_pred HHHHHHHHHHHhhhhhhccCCCCCCC-EEEEecchhHHHHHHHHHhCCCceeEeeecCcc
Q psy1220 138 ADFVDVIQSLEDASRLRIGAAFKPHP-VIAFGGSYGGMLAFWLRLKYPHIVQGALASSAP 196 (337)
Q Consensus 138 ~D~~~~i~~l~~~~~~~~~~~~~~~~-~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap 196 (337)
+|+.+++++++ + .+ ++++||||||++|+.++.+||++|.++|+.++.
T Consensus 125 ~dl~~ll~~l~-------l-----~~~~~lvG~SmGG~vA~~~A~~~P~~V~~LvLi~s~ 172 (343)
T PRK08775 125 DAIALLLDALG-------I-----ARLHAFVGYSYGALVGLQFASRHPARVRTLVVVSGA 172 (343)
T ss_pred HHHHHHHHHcC-------C-----CcceEEEEECHHHHHHHHHHHHChHhhheEEEECcc
Confidence 99999999887 3 34 589999999999999999999999999977654
No 34
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.56 E-value=6.4e-14 Score=123.56 Aligned_cols=94 Identities=23% Similarity=0.291 Sum_probs=70.5
Q ss_pred CcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHh
Q psy1220 70 APVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLED 149 (337)
Q Consensus 70 ~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~ 149 (337)
.||||+||.+++...|.. ++..+++ +++|+++|+||||.|.+.. ..+.++.++|+.+.
T Consensus 5 ~~iv~~HG~~~~~~~~~~---~~~~l~~--~~~vi~~d~~G~G~s~~~~-----------~~~~~~~~~~~~~~------ 62 (245)
T TIGR01738 5 VHLVLIHGWGMNAEVFRC---LDEELSA--HFTLHLVDLPGHGRSRGFG-----------PLSLADAAEAIAAQ------ 62 (245)
T ss_pred ceEEEEcCCCCchhhHHH---HHHhhcc--CeEEEEecCCcCccCCCCC-----------CcCHHHHHHHHHHh------
Confidence 689999998877666543 3444543 4789999999999987532 23455555554432
Q ss_pred hhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCc
Q psy1220 150 ASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSA 195 (337)
Q Consensus 150 ~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sa 195 (337)
. ..+++++||||||++++.++.++|+++.++|+.++
T Consensus 63 ------~----~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~ 98 (245)
T TIGR01738 63 ------A----PDPAIWLGWSLGGLVALHIAATHPDRVRALVTVAS 98 (245)
T ss_pred ------C----CCCeEEEEEcHHHHHHHHHHHHCHHhhheeeEecC
Confidence 1 15899999999999999999999999999996554
No 35
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.56 E-value=3.5e-14 Score=131.42 Aligned_cols=107 Identities=21% Similarity=0.278 Sum_probs=82.0
Q ss_pred CcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCC-CCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 70 APVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLP-FGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 70 ~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~-~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
+.||++||.......|.. ++..|+ ..|+.|+++||||||.|.. ... ..-+.++.++|+..+++.+.
T Consensus 35 g~Vvl~HG~~Eh~~ry~~---la~~l~-~~G~~V~~~D~RGhG~S~r~~rg---------~~~~f~~~~~dl~~~~~~~~ 101 (298)
T COG2267 35 GVVVLVHGLGEHSGRYEE---LADDLA-ARGFDVYALDLRGHGRSPRGQRG---------HVDSFADYVDDLDAFVETIA 101 (298)
T ss_pred cEEEEecCchHHHHHHHH---HHHHHH-hCCCEEEEecCCCCCCCCCCCcC---------CchhHHHHHHHHHHHHHHHh
Confidence 689999995554433332 233343 4589999999999999973 111 11238899999999999988
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCccc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPM 197 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~ 197 (337)
.. . ...|++++||||||.||+.++.++|..++++|++|+-+
T Consensus 102 ~~-----~---~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~ 142 (298)
T COG2267 102 EP-----D---PGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPAL 142 (298)
T ss_pred cc-----C---CCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccc
Confidence 53 1 34799999999999999999999999999999998433
No 36
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.55 E-value=1.3e-14 Score=134.97 Aligned_cols=104 Identities=25% Similarity=0.298 Sum_probs=79.6
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
+.||||+||++++...+. +.......+++|+++|+||||+|.+... ....+.++.++|+..++++++
T Consensus 27 ~~~lvllHG~~~~~~~~~-----~~~~~~~~~~~vi~~D~~G~G~S~~~~~--------~~~~~~~~~~~dl~~l~~~l~ 93 (306)
T TIGR01249 27 GKPVVFLHGGPGSGTDPG-----CRRFFDPETYRIVLFDQRGCGKSTPHAC--------LEENTTWDLVADIEKLREKLG 93 (306)
T ss_pred CCEEEEECCCCCCCCCHH-----HHhccCccCCEEEEECCCCCCCCCCCCC--------cccCCHHHHHHHHHHHHHHcC
Confidence 578999999887744321 2222223468899999999999985321 112457888899888888775
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCccc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPM 197 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~ 197 (337)
. .+++++||||||++++.++.+||+.|+++|+.++..
T Consensus 94 -------~-----~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~ 130 (306)
T TIGR01249 94 -------I-----KNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFL 130 (306)
T ss_pred -------C-----CCEEEEEECHHHHHHHHHHHHChHhhhhheeecccc
Confidence 3 689999999999999999999999999999877544
No 37
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.54 E-value=3.6e-14 Score=135.64 Aligned_cols=106 Identities=14% Similarity=0.143 Sum_probs=86.7
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
+.||||+||.+++...|.. ++..|++ +++|+++|+||||.|...... ....++.++.++|+.+++++++
T Consensus 127 ~~~ivllHG~~~~~~~w~~---~~~~L~~--~~~Via~DlpG~G~S~~p~~~------~~~~ys~~~~a~~l~~~i~~l~ 195 (383)
T PLN03084 127 NPPVLLIHGFPSQAYSYRK---VLPVLSK--NYHAIAFDWLGFGFSDKPQPG------YGFNYTLDEYVSSLESLIDELK 195 (383)
T ss_pred CCeEEEECCCCCCHHHHHH---HHHHHhc--CCEEEEECCCCCCCCCCCccc------ccccCCHHHHHHHHHHHHHHhC
Confidence 5689999999888776654 3455654 578999999999999764211 1124679999999999999887
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCccc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPM 197 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~ 197 (337)
. .+++++||||||++++.++.+||++|.++|+++++.
T Consensus 196 -------~-----~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~ 232 (383)
T PLN03084 196 -------S-----DKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPL 232 (383)
T ss_pred -------C-----CCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCC
Confidence 3 689999999999999999999999999999888764
No 38
>KOG2564|consensus
Probab=99.54 E-value=1.3e-13 Score=121.90 Aligned_cols=190 Identities=22% Similarity=0.288 Sum_probs=118.0
Q ss_pred eeeeEEeecCCCCCCCCCeEeeEEEEeCcccCCCCCCcE-EEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccc
Q psy1220 34 ETKFFDAKLDHFTYVSNQTFPLKYLINDEFWDEDGGAPV-FFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYG 112 (337)
Q Consensus 34 ~~~~f~q~~dhf~~~~~~tf~qry~~~~~~~~~~~~~pi-vl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G 112 (337)
...||+.+.|.--.....||..-+-... .. .+|| +++|||+.+.-+|.. +..++......+|+++|+||||
T Consensus 43 Ws~yFdekedv~i~~~~~t~n~Y~t~~~----~t-~gpil~l~HG~G~S~LSfA~---~a~el~s~~~~r~~a~DlRgHG 114 (343)
T KOG2564|consen 43 WSDYFDEKEDVSIDGSDLTFNVYLTLPS----AT-EGPILLLLHGGGSSALSFAI---FASELKSKIRCRCLALDLRGHG 114 (343)
T ss_pred hHHhhccccccccCCCcceEEEEEecCC----CC-CccEEEEeecCcccchhHHH---HHHHHHhhcceeEEEeeccccC
Confidence 4456777766644333445653332221 12 4565 566888777777765 5677777777889999999999
Q ss_pred cCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHH--hCCCceeEe
Q psy1220 113 SSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRL--KYPHIVQGA 190 (337)
Q Consensus 113 ~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~--~~P~~v~~~ 190 (337)
+|.-. +-..++.+.+..|+-++++.+-.+ ...+++++||||||.||...+. .-|. +.|+
T Consensus 115 eTk~~---------~e~dlS~eT~~KD~~~~i~~~fge---------~~~~iilVGHSmGGaIav~~a~~k~lps-l~Gl 175 (343)
T KOG2564|consen 115 ETKVE---------NEDDLSLETMSKDFGAVIKELFGE---------LPPQIILVGHSMGGAIAVHTAASKTLPS-LAGL 175 (343)
T ss_pred ccccC---------ChhhcCHHHHHHHHHHHHHHHhcc---------CCCceEEEeccccchhhhhhhhhhhchh-hhce
Confidence 99753 334488999999999999988633 2378999999999999988774 3577 7777
Q ss_pred eecCccccccCCCCChhHHHHHHHHHHhccCcccHHHHHHHHHHHHHhhhC---CchhHHHHHhcCCCCC
Q psy1220 191 LASSAPMFQTNDLAPCDIYYKEVTKIYRDVSPKCEENIRNSWTFINTELQT---DSGRVEFSREWNLCSS 257 (337)
Q Consensus 191 v~~sap~~~~~~~~~~~~~~~~v~~~~~~~~~~c~~~~~~~~~~i~~~~~~---~~~~~~l~~~f~~~~~ 257 (337)
+....+ ... --++...++..++. .+.--+.+.++++.--+-+.. ...+-.+...+..|+.
T Consensus 176 ~viDVV-Egt-----AmeAL~~m~~fL~~-rP~~F~Si~~Ai~W~v~sg~~Rn~~SArVsmP~~~~~~~e 238 (343)
T KOG2564|consen 176 VVIDVV-EGT-----AMEALNSMQHFLRN-RPKSFKSIEDAIEWHVRSGQLRNRDSARVSMPSQLKQCEE 238 (343)
T ss_pred EEEEEe-chH-----HHHHHHHHHHHHhc-CCccccchhhHHHHHhccccccccccceEecchheeeccC
Confidence 765522 110 12233333333333 444555556665543322211 1124446667766664
No 39
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.53 E-value=4.4e-14 Score=124.53 Aligned_cols=102 Identities=21% Similarity=0.263 Sum_probs=78.8
Q ss_pred CcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHH-HHHHHHHHH
Q psy1220 70 APVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLAD-FVDVIQSLE 148 (337)
Q Consensus 70 ~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D-~~~~i~~l~ 148 (337)
.+||++||..++...|.. +...|+ .++.|+++|+||||.|.... .....+.++.++| +..+++.+.
T Consensus 2 ~~vv~~hG~~~~~~~~~~---~~~~L~--~~~~v~~~d~~g~G~s~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 68 (251)
T TIGR03695 2 PVLVFLHGFLGSGADWQA---LIELLG--PHFRCLAIDLPGHGSSQSPD--------EIERYDFEEAAQDILATLLDQLG 68 (251)
T ss_pred CEEEEEcCCCCchhhHHH---HHHHhc--ccCeEEEEcCCCCCCCCCCC--------ccChhhHHHHHHHHHHHHHHHcC
Confidence 579999998888776644 344555 36889999999999996532 1233567777877 566655543
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAP 196 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap 196 (337)
. .+++++||||||.+|+.++.++|+.|.++++.++.
T Consensus 69 -------~-----~~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~ 104 (251)
T TIGR03695 69 -------I-----EPFFLVGYSMGGRIALYYALQYPERVQGLILESGS 104 (251)
T ss_pred -------C-----CeEEEEEeccHHHHHHHHHHhCchheeeeEEecCC
Confidence 2 68999999999999999999999999999987654
No 40
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.53 E-value=1.6e-13 Score=124.67 Aligned_cols=109 Identities=12% Similarity=-0.047 Sum_probs=80.3
Q ss_pred CCcEEEEeCCCCCccchhhh-hHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAEN-LGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSL 147 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~-~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l 147 (337)
.++||++||..+....+... ..+...|+ +.|+.|+.+|+||||.|.... ...+.++.++|+..+++.+
T Consensus 25 ~~~VlllHG~g~~~~~~~~~~~~la~~La-~~Gy~Vl~~Dl~G~G~S~g~~----------~~~~~~~~~~Dv~~ai~~L 93 (266)
T TIGR03101 25 RGVVIYLPPFAEEMNKSRRMVALQARAFA-AGGFGVLQIDLYGCGDSAGDF----------AAARWDVWKEDVAAAYRWL 93 (266)
T ss_pred ceEEEEECCCcccccchhHHHHHHHHHHH-HCCCEEEEECCCCCCCCCCcc----------ccCCHHHHHHHHHHHHHHH
Confidence 34688999976543322221 01122343 358999999999999996421 1235788899999998888
Q ss_pred HhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCccc
Q psy1220 148 EDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPM 197 (337)
Q Consensus 148 ~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~ 197 (337)
++. ...+++++||||||.+++.++.++|+.+.++|+.++++
T Consensus 94 ~~~---------~~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~ 134 (266)
T TIGR03101 94 IEQ---------GHPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVV 134 (266)
T ss_pred Hhc---------CCCCEEEEEECHHHHHHHHHHHhCccccceEEEecccc
Confidence 753 23689999999999999999999999999999887544
No 41
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.48 E-value=4.9e-13 Score=129.09 Aligned_cols=103 Identities=18% Similarity=0.181 Sum_probs=74.4
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHH----HHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQ----TLADFVDVI 144 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~----~~~D~~~~i 144 (337)
+.||||+||.+++...|.. .+..|++ +++|+++|+||||.|.... .. ..+.++ .++|+.+++
T Consensus 105 ~p~vvllHG~~~~~~~~~~---~~~~L~~--~~~vi~~D~rG~G~S~~~~-~~--------~~~~~~~~~~~~~~i~~~~ 170 (402)
T PLN02894 105 APTLVMVHGYGASQGFFFR---NFDALAS--RFRVIAIDQLGWGGSSRPD-FT--------CKSTEETEAWFIDSFEEWR 170 (402)
T ss_pred CCEEEEECCCCcchhHHHH---HHHHHHh--CCEEEEECCCCCCCCCCCC-cc--------cccHHHHHHHHHHHHHHHH
Confidence 5789999998877666654 2455665 3789999999999997532 11 111222 344455554
Q ss_pred HHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCccc
Q psy1220 145 QSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPM 197 (337)
Q Consensus 145 ~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~ 197 (337)
+.+. . .+++++||||||++|+.++.++|+.|+++|+.+++.
T Consensus 171 ~~l~-------~-----~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~~ 211 (402)
T PLN02894 171 KAKN-------L-----SNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAG 211 (402)
T ss_pred HHcC-------C-----CCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCcc
Confidence 4333 2 689999999999999999999999999999876543
No 42
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.46 E-value=2.5e-13 Score=128.88 Aligned_cols=117 Identities=17% Similarity=0.149 Sum_probs=81.6
Q ss_pred CCcEEEEeCCCCCccch--h--hhhHHHHHHH---H---hcCCcEEEecccc--cccCCCCCCCC--CCCCcccccCCHH
Q psy1220 69 GAPVFFYCGNEDAIETF--A--ENLGFLWESA---K---RFSARVVLVEHRY--YGSSLPFGPKS--LSSPRLSGYLTVA 134 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~--~--~~~~~~~~la---~---~~~~~vi~~D~rg--~G~S~~~~~~s--~~~~~~~~~~t~~ 134 (337)
+.+|||+||..++.... . .+.|+|..+. + ..+++||++|+|| ||.|.+..... ..-..+...++++
T Consensus 31 ~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~~~~~~~~~~~~~~~~~~~~~~ 110 (351)
T TIGR01392 31 SNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTGPSSINPGGRPYGSDFPLITIR 110 (351)
T ss_pred CCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCCCCCCCCCCCcCCCCCCCCcHH
Confidence 46899999988865321 1 1123333332 1 2467999999999 67765521100 0000012247899
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCCCC-EEEEecchhHHHHHHHHHhCCCceeEeeecCccc
Q psy1220 135 QTLADFVDVIQSLEDASRLRIGAAFKPHP-VIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPM 197 (337)
Q Consensus 135 ~~~~D~~~~i~~l~~~~~~~~~~~~~~~~-~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~ 197 (337)
+.++|+.+++++++ + .+ ++++||||||++|+.++.+||++|+++|+.+++.
T Consensus 111 ~~~~~~~~~~~~l~-------~-----~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 162 (351)
T TIGR01392 111 DDVKAQKLLLDHLG-------I-----EQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSA 162 (351)
T ss_pred HHHHHHHHHHHHcC-------C-----CCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCC
Confidence 99999999999886 4 56 9999999999999999999999999999777544
No 43
>PRK07581 hypothetical protein; Validated
Probab=99.45 E-value=1.7e-13 Score=129.31 Aligned_cols=83 Identities=12% Similarity=0.149 Sum_probs=56.7
Q ss_pred CCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHH----HHHHHHhhhhhhccCCCCCCC-EEEEecchhHH
Q psy1220 100 SARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVD----VIQSLEDASRLRIGAAFKPHP-VIAFGGSYGGM 174 (337)
Q Consensus 100 ~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~----~i~~l~~~~~~~~~~~~~~~~-~il~G~S~GG~ 174 (337)
+++||++|+||||.|........ +-.+..+......+|+++ ++++++ + .+ ++|+||||||+
T Consensus 71 ~~~vi~~D~~G~G~S~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~lg-------i-----~~~~~lvG~S~GG~ 136 (339)
T PRK07581 71 KYFIIIPNMFGNGLSSSPSNTPA--PFNAARFPHVTIYDNVRAQHRLLTEKFG-------I-----ERLALVVGWSMGAQ 136 (339)
T ss_pred ceEEEEecCCCCCCCCCCCCCCC--CCCCCCCCceeHHHHHHHHHHHHHHHhC-------C-----CceEEEEEeCHHHH
Confidence 57899999999999975321100 001111212224455554 444555 3 67 58999999999
Q ss_pred HHHHHHHhCCCceeEeeecCcc
Q psy1220 175 LAFWLRLKYPHIVQGALASSAP 196 (337)
Q Consensus 175 la~~~~~~~P~~v~~~v~~sap 196 (337)
+|+.++.+||++|+++|+.++.
T Consensus 137 va~~~a~~~P~~V~~Lvli~~~ 158 (339)
T PRK07581 137 QTYHWAVRYPDMVERAAPIAGT 158 (339)
T ss_pred HHHHHHHHCHHHHhhheeeecC
Confidence 9999999999999999976543
No 44
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.44 E-value=3e-12 Score=110.04 Aligned_cols=110 Identities=18% Similarity=0.119 Sum_probs=89.3
Q ss_pred CCCCCCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHH
Q psy1220 65 DEDGGAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVI 144 (337)
Q Consensus 65 ~~~~~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i 144 (337)
++| +..|+|+||..|+...... +.+...+.|+.|.++-+||||.... .+-..+.+++.+|+.+--
T Consensus 12 ~~G-~~AVLllHGFTGt~~Dvr~----Lgr~L~e~GyTv~aP~ypGHG~~~e----------~fl~t~~~DW~~~v~d~Y 76 (243)
T COG1647 12 EGG-NRAVLLLHGFTGTPRDVRM----LGRYLNENGYTVYAPRYPGHGTLPE----------DFLKTTPRDWWEDVEDGY 76 (243)
T ss_pred ccC-CEEEEEEeccCCCcHHHHH----HHHHHHHCCceEecCCCCCCCCCHH----------HHhcCCHHHHHHHHHHHH
Confidence 456 6889999998887554432 4444456699999999999997531 344567899999999999
Q ss_pred HHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcccccc
Q psy1220 145 QSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQT 200 (337)
Q Consensus 145 ~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~~~ 200 (337)
+.|++++ + ..+.++|-||||.+|++++..|| ++++|..+||+...
T Consensus 77 ~~L~~~g----y-----~eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k 121 (243)
T COG1647 77 RDLKEAG----Y-----DEIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVK 121 (243)
T ss_pred HHHHHcC----C-----CeEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccc
Confidence 9998541 3 78999999999999999999999 89999999998765
No 45
>PLN02511 hydrolase
Probab=99.44 E-value=9.7e-13 Score=126.46 Aligned_cols=108 Identities=17% Similarity=0.183 Sum_probs=80.7
Q ss_pred CCcEEEEeCCCCCccc-hhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIET-FAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSL 147 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~-~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l 147 (337)
+++||++||.+|+... |.. .+...+ .+.|++|+++|+||||.|..... +.+ .....+|+.++++++
T Consensus 100 ~p~vvllHG~~g~s~~~y~~--~~~~~~-~~~g~~vv~~d~rG~G~s~~~~~---------~~~-~~~~~~Dl~~~i~~l 166 (388)
T PLN02511 100 APVLILLPGLTGGSDDSYVR--HMLLRA-RSKGWRVVVFNSRGCADSPVTTP---------QFY-SASFTGDLRQVVDHV 166 (388)
T ss_pred CCEEEEECCCCCCCCCHHHH--HHHHHH-HHCCCEEEEEecCCCCCCCCCCc---------CEE-cCCchHHHHHHHHHH
Confidence 3458999999887543 322 122223 35689999999999999975321 111 245678999999999
Q ss_pred HhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCc--eeEeeecCccc
Q psy1220 148 EDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHI--VQGALASSAPM 197 (337)
Q Consensus 148 ~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~--v~~~v~~sap~ 197 (337)
+.+ + +..+++++||||||++++.++.++|+. |.++++.++|.
T Consensus 167 ~~~-----~---~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~ 210 (388)
T PLN02511 167 AGR-----Y---PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPF 210 (388)
T ss_pred HHH-----C---CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCc
Confidence 975 4 346899999999999999999999987 88888777775
No 46
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.44 E-value=1.1e-12 Score=126.03 Aligned_cols=107 Identities=15% Similarity=0.200 Sum_probs=79.7
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
.++||++||..++...|.. +...|++ .|+.|+++|+||||+|..... ...+.++.++|+.++++.+.
T Consensus 136 ~~~Vl~lHG~~~~~~~~~~---~a~~L~~-~Gy~V~~~D~rGhG~S~~~~~---------~~~~~~~~~~Dl~~~l~~l~ 202 (395)
T PLN02652 136 RGILIIIHGLNEHSGRYLH---FAKQLTS-CGFGVYAMDWIGHGGSDGLHG---------YVPSLDYVVEDTEAFLEKIR 202 (395)
T ss_pred ceEEEEECCchHHHHHHHH---HHHHHHH-CCCEEEEeCCCCCCCCCCCCC---------CCcCHHHHHHHHHHHHHHHH
Confidence 3578999997766444432 3444544 489999999999999975321 11357889999999999998
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCC---ceeEeeecCccc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPH---IVQGALASSAPM 197 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~---~v~~~v~~sap~ 197 (337)
.+ . +..+++++||||||.+++.++. +|+ .+.++|+.++..
T Consensus 203 ~~-----~---~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP~l 245 (395)
T PLN02652 203 SE-----N---PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSPAL 245 (395)
T ss_pred Hh-----C---CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECccc
Confidence 64 3 3358999999999999998764 664 799999887543
No 47
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.42 E-value=1.5e-12 Score=122.71 Aligned_cols=122 Identities=15% Similarity=0.122 Sum_probs=80.5
Q ss_pred CCcEEEEeCCCCCcc-chhh----------------------hhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCC
Q psy1220 69 GAPVFFYCGNEDAIE-TFAE----------------------NLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSP 125 (337)
Q Consensus 69 ~~pivl~hGg~g~~~-~~~~----------------------~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~ 125 (337)
.+.|+++||..+... .+.. ...+...|++ .|+.|+++||||||+|.......
T Consensus 21 kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~-~G~~V~~~D~rGHG~S~~~~~~~---- 95 (332)
T TIGR01607 21 IGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNK-NGYSVYGLDLQGHGESDGLQNLR---- 95 (332)
T ss_pred eEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHH-CCCcEEEecccccCCCccccccc----
Confidence 568999999665543 1110 0123344544 48999999999999997532100
Q ss_pred cccccCCHHHHHHHHHHHHHHHHhhhhhh----------cc-CCCC-CCCEEEEecchhHHHHHHHHHhCCC--------
Q psy1220 126 RLSGYLTVAQTLADFVDVIQSLEDASRLR----------IG-AAFK-PHPVIAFGGSYGGMLAFWLRLKYPH-------- 185 (337)
Q Consensus 126 ~~~~~~t~~~~~~D~~~~i~~l~~~~~~~----------~~-~~~~-~~~~il~G~S~GG~la~~~~~~~P~-------- 185 (337)
....+.++.++|+..+++.+++....+ .. ...+ ..|++++||||||.+++.+++++++
T Consensus 96 --g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i~~~~~~~~~~~~~~~~~~ 173 (332)
T TIGR01607 96 --GHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNIALRLLELLGKSNENNDKL 173 (332)
T ss_pred --cchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHHHHHHHHHhcccccccccc
Confidence 001368999999999999876410000 00 0012 4689999999999999999987764
Q ss_pred ceeEeeecCccc
Q psy1220 186 IVQGALASSAPM 197 (337)
Q Consensus 186 ~v~~~v~~sap~ 197 (337)
.++|+|++|++.
T Consensus 174 ~i~g~i~~s~~~ 185 (332)
T TIGR01607 174 NIKGCISLSGMI 185 (332)
T ss_pred ccceEEEeccce
Confidence 588888777665
No 48
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.42 E-value=1.5e-12 Score=123.75 Aligned_cols=101 Identities=19% Similarity=0.179 Sum_probs=80.3
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
+.||||+||.+++...|.. +...|.+. ++|+++|+||||.|.+.. ...+.++.++++.++++.+.
T Consensus 131 ~~~vl~~HG~~~~~~~~~~---~~~~l~~~--~~v~~~d~~g~G~s~~~~----------~~~~~~~~~~~~~~~~~~~~ 195 (371)
T PRK14875 131 GTPVVLIHGFGGDLNNWLF---NHAALAAG--RPVIALDLPGHGASSKAV----------GAGSLDELAAAVLAFLDALG 195 (371)
T ss_pred CCeEEEECCCCCccchHHH---HHHHHhcC--CEEEEEcCCCCCCCCCCC----------CCCCHHHHHHHHHHHHHhcC
Confidence 5689999998888776654 24445443 789999999999996421 22457888888888877655
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAP 196 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap 196 (337)
. .+++++||||||.+|+.++.++|+++.++++.+++
T Consensus 196 -------~-----~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~ 231 (371)
T PRK14875 196 -------I-----ERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPA 231 (371)
T ss_pred -------C-----ccEEEEeechHHHHHHHHHHhCchheeEEEEECcC
Confidence 2 58999999999999999999999999999977654
No 49
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.39 E-value=1.9e-12 Score=124.18 Aligned_cols=117 Identities=17% Similarity=0.123 Sum_probs=81.0
Q ss_pred CCcEEEEeCCCCCccchhh------hhHHHHHHHH------hcCCcEEEeccccc-ccC-CCCCCCCC-CCC--cccccC
Q psy1220 69 GAPVFFYCGNEDAIETFAE------NLGFLWESAK------RFSARVVLVEHRYY-GSS-LPFGPKSL-SSP--RLSGYL 131 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~------~~~~~~~la~------~~~~~vi~~D~rg~-G~S-~~~~~~s~-~~~--~~~~~~ 131 (337)
+.+|||+||..++...|.. ..|+|..+.. ..+++||++|+||+ |.| .+...... ..+ .+...+
T Consensus 48 ~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~~~ 127 (379)
T PRK00175 48 SNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFPVI 127 (379)
T ss_pred CCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCCcC
Confidence 4579999999988764321 1122333421 23678999999983 444 33211000 000 011247
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhccCCCCCCC-EEEEecchhHHHHHHHHHhCCCceeEeeecCccc
Q psy1220 132 TVAQTLADFVDVIQSLEDASRLRIGAAFKPHP-VIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPM 197 (337)
Q Consensus 132 t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~-~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~ 197 (337)
+.++.++|+.+++++++ + .+ ++++||||||++|+.++.+||++|+++|+.++..
T Consensus 128 ~~~~~~~~~~~~l~~l~-------~-----~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 182 (379)
T PRK00175 128 TIRDWVRAQARLLDALG-------I-----TRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSA 182 (379)
T ss_pred CHHHHHHHHHHHHHHhC-------C-----CCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCc
Confidence 89999999999999887 4 56 5999999999999999999999999999776543
No 50
>KOG1454|consensus
Probab=99.37 E-value=1.3e-12 Score=122.36 Aligned_cols=109 Identities=20% Similarity=0.258 Sum_probs=83.6
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
+.|||++||..++...|..+ +..+.+..|..|+++|.+|||.|++.+.. ..++....++-+..+.....
T Consensus 58 ~~pvlllHGF~~~~~~w~~~---~~~L~~~~~~~v~aiDl~G~g~~s~~~~~--------~~y~~~~~v~~i~~~~~~~~ 126 (326)
T KOG1454|consen 58 KPPVLLLHGFGASSFSWRRV---VPLLSKAKGLRVLAIDLPGHGYSSPLPRG--------PLYTLRELVELIRRFVKEVF 126 (326)
T ss_pred CCcEEEeccccCCcccHhhh---ccccccccceEEEEEecCCCCcCCCCCCC--------CceehhHHHHHHHHHHHhhc
Confidence 78999999988888877663 56677777788999999999966554321 22556666665555555544
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEee---ecCcccccc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGAL---ASSAPMFQT 200 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v---~~sap~~~~ 200 (337)
. .+++++||||||++|..+|..||+.|++++ +..++....
T Consensus 127 -------~-----~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~ 169 (326)
T KOG1454|consen 127 -------V-----EPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYST 169 (326)
T ss_pred -------C-----cceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccC
Confidence 2 579999999999999999999999999999 666665443
No 51
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.34 E-value=3.9e-12 Score=141.02 Aligned_cols=108 Identities=20% Similarity=0.253 Sum_probs=83.0
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
+.+|||+||..++...|.. ++..|.+ +++|+++|+||||.|........ ......++.+...+|+.+++++++
T Consensus 1371 ~~~vVllHG~~~s~~~w~~---~~~~L~~--~~rVi~~Dl~G~G~S~~~~~~~~--~~~~~~~si~~~a~~l~~ll~~l~ 1443 (1655)
T PLN02980 1371 GSVVLFLHGFLGTGEDWIP---IMKAISG--SARCISIDLPGHGGSKIQNHAKE--TQTEPTLSVELVADLLYKLIEHIT 1443 (1655)
T ss_pred CCeEEEECCCCCCHHHHHH---HHHHHhC--CCEEEEEcCCCCCCCCCcccccc--ccccccCCHHHHHHHHHHHHHHhC
Confidence 4689999999988776654 3455654 36899999999999975321000 001124678889999998988776
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSA 195 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sa 195 (337)
. .+++++||||||++|+.++.+||++|+++|+.++
T Consensus 1444 -------~-----~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~ 1478 (1655)
T PLN02980 1444 -------P-----GKVTLVGYSMGARIALYMALRFSDKIEGAVIISG 1478 (1655)
T ss_pred -------C-----CCEEEEEECHHHHHHHHHHHhChHhhCEEEEECC
Confidence 3 6899999999999999999999999999997654
No 52
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.34 E-value=8.2e-12 Score=110.03 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=82.8
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
.+.||++||++++...+....+ +..++++.|+.|+++|.||+|.+...-+. .... . + ........|+..+++.+.
T Consensus 13 ~P~vv~lHG~~~~~~~~~~~~~-~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~-~~~~-~-~-~~~~~~~~~~~~~i~~~~ 87 (212)
T TIGR01840 13 RALVLALHGCGQTASAYVIDWG-WKAAADRYGFVLVAPEQTSYNSSNNCWDW-FFTH-H-R-ARGTGEVESLHQLIDAVK 87 (212)
T ss_pred CCEEEEeCCCCCCHHHHhhhcC-hHHHHHhCCeEEEecCCcCccccCCCCCC-CCcc-c-c-CCCCccHHHHHHHHHHHH
Confidence 3458899999887666543333 56688888999999999999865421110 0000 0 0 001234667778888887
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcccc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMF 198 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~ 198 (337)
.+ + ..+..+++++|||+||.+++.++.++|+.+.+++..+++..
T Consensus 88 ~~-----~-~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~ 131 (212)
T TIGR01840 88 AN-----Y-SIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPY 131 (212)
T ss_pred Hh-----c-CcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcc
Confidence 65 3 33446899999999999999999999999999987776643
No 53
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.33 E-value=3.7e-12 Score=111.85 Aligned_cols=78 Identities=28% Similarity=0.305 Sum_probs=66.4
Q ss_pred CcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHH
Q psy1220 101 ARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLR 180 (337)
Q Consensus 101 ~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~ 180 (337)
++|+++|+||+|.|.+... .....++.+..++|+..+++.++ . .+++++||||||++++.++
T Consensus 1 f~vi~~d~rG~g~S~~~~~------~~~~~~~~~~~~~~~~~~~~~l~-------~-----~~~~~vG~S~Gg~~~~~~a 62 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPHWD------PDFPDYTTDDLAADLEALREALG-------I-----KKINLVGHSMGGMLALEYA 62 (230)
T ss_dssp EEEEEEECTTSTTSSSCCG------SGSCTHCHHHHHHHHHHHHHHHT-------T-----SSEEEEEETHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCCCCCcc------CCcccccHHHHHHHHHHHHHHhC-------C-----CCeEEEEECCChHHHHHHH
Confidence 3699999999999996100 04456789999999999999887 3 5699999999999999999
Q ss_pred HhCCCceeEeeecCcc
Q psy1220 181 LKYPHIVQGALASSAP 196 (337)
Q Consensus 181 ~~~P~~v~~~v~~sap 196 (337)
.+||++|+++|+.+++
T Consensus 63 ~~~p~~v~~lvl~~~~ 78 (230)
T PF00561_consen 63 AQYPERVKKLVLISPP 78 (230)
T ss_dssp HHSGGGEEEEEEESES
T ss_pred HHCchhhcCcEEEeee
Confidence 9999999999988876
No 54
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.33 E-value=1.9e-11 Score=111.97 Aligned_cols=109 Identities=16% Similarity=0.083 Sum_probs=78.3
Q ss_pred CCcEEEEeCCCCCcc-chhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIE-TFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSL 147 (337)
Q Consensus 69 ~~pivl~hGg~g~~~-~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l 147 (337)
+.+||++|||.+... .+.....+...|+ +.|+.|+++|+||||+|.+.. .+.++..+|+.++++.+
T Consensus 26 ~~~vv~i~gg~~~~~g~~~~~~~la~~l~-~~G~~v~~~Dl~G~G~S~~~~------------~~~~~~~~d~~~~~~~l 92 (274)
T TIGR03100 26 TTGVLIVVGGPQYRVGSHRQFVLLARRLA-EAGFPVLRFDYRGMGDSEGEN------------LGFEGIDADIAAAIDAF 92 (274)
T ss_pred CCeEEEEeCCccccCCchhHHHHHHHHHH-HCCCEEEEeCCCCCCCCCCCC------------CCHHHHHHHHHHHHHHH
Confidence 457898998765432 2222112233344 358999999999999986421 24677889999999999
Q ss_pred HhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcccc
Q psy1220 148 EDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMF 198 (337)
Q Consensus 148 ~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~ 198 (337)
+++ .+ ...+++++||||||.+++.++.. ++.|+++|+.++++.
T Consensus 93 ~~~-----~~--g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~~ 135 (274)
T TIGR03100 93 REA-----AP--HLRRIVAWGLCDAASAALLYAPA-DLRVAGLVLLNPWVR 135 (274)
T ss_pred Hhh-----CC--CCCcEEEEEECHHHHHHHHHhhh-CCCccEEEEECCccC
Confidence 854 21 12579999999999999999875 467999999886643
No 55
>PRK05855 short chain dehydrogenase; Validated
Probab=99.31 E-value=5.2e-12 Score=127.05 Aligned_cols=104 Identities=21% Similarity=0.192 Sum_probs=77.7
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
++||||+||..++...|.. ++..|+ .+++|+++|+||||.|.... ....++.++.++|+..+++.++
T Consensus 25 ~~~ivllHG~~~~~~~w~~---~~~~L~--~~~~Vi~~D~~G~G~S~~~~--------~~~~~~~~~~a~dl~~~i~~l~ 91 (582)
T PRK05855 25 RPTVVLVHGYPDNHEVWDG---VAPLLA--DRFRVVAYDVRGAGRSSAPK--------RTAAYTLARLADDFAAVIDAVS 91 (582)
T ss_pred CCeEEEEcCCCchHHHHHH---HHHHhh--cceEEEEecCCCCCCCCCCC--------cccccCHHHHHHHHHHHHHHhC
Confidence 5689999998887666654 344453 35789999999999997532 1234679999999999999876
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHh--CCCceeEeeecCcc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLK--YPHIVQGALASSAP 196 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~--~P~~v~~~v~~sap 196 (337)
.. .|++++||||||++++.++.+ +|+.+..++..++|
T Consensus 92 ~~-----------~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~~ 130 (582)
T PRK05855 92 PD-----------RPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSGP 130 (582)
T ss_pred CC-----------CcEEEEecChHHHHHHHHHhCccchhhhhhheeccCC
Confidence 32 469999999999999888765 45555555555544
No 56
>PRK10985 putative hydrolase; Provisional
Probab=99.30 E-value=2.6e-11 Score=113.84 Aligned_cols=110 Identities=18% Similarity=0.110 Sum_probs=76.6
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
+++||++||.+++...... ..+...++ +.|++|+++|+||||.|..... +.++. ...+|+..+++.+.
T Consensus 58 ~p~vll~HG~~g~~~~~~~-~~~~~~l~-~~G~~v~~~d~rG~g~~~~~~~---------~~~~~-~~~~D~~~~i~~l~ 125 (324)
T PRK10985 58 KPRLVLFHGLEGSFNSPYA-HGLLEAAQ-KRGWLGVVMHFRGCSGEPNRLH---------RIYHS-GETEDARFFLRWLQ 125 (324)
T ss_pred CCEEEEeCCCCCCCcCHHH-HHHHHHHH-HCCCEEEEEeCCCCCCCccCCc---------ceECC-CchHHHHHHHHHHH
Confidence 4568999998876443211 11233344 5699999999999997743211 11111 23688888888888
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCc--eeEeeecCcccc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHI--VQGALASSAPMF 198 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~--v~~~v~~sap~~ 198 (337)
++ + +..+++++||||||.+++.++.++++. +.++++.++|..
T Consensus 126 ~~-----~---~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~ 169 (324)
T PRK10985 126 RE-----F---GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLM 169 (324)
T ss_pred Hh-----C---CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCC
Confidence 65 3 346899999999999999888887654 888888887764
No 57
>PRK10566 esterase; Provisional
Probab=99.29 E-value=3.5e-11 Score=108.12 Aligned_cols=110 Identities=18% Similarity=0.210 Sum_probs=73.7
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCccccc--CCHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGY--LTVAQTLADFVDVIQS 146 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~--~t~~~~~~D~~~~i~~ 146 (337)
.+.||++||+.++...|.. +...+++ .|+.|+++|+||||.|....... .+.. -...+.++|+.+++++
T Consensus 27 ~p~vv~~HG~~~~~~~~~~---~~~~l~~-~G~~v~~~d~~g~G~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 97 (249)
T PRK10566 27 LPTVFFYHGFTSSKLVYSY---FAVALAQ-AGFRVIMPDAPMHGARFSGDEAR-----RLNHFWQILLQNMQEFPTLRAA 97 (249)
T ss_pred CCEEEEeCCCCcccchHHH---HHHHHHh-CCCEEEEecCCcccccCCCcccc-----chhhHHHHHHHHHHHHHHHHHH
Confidence 3468999998877655432 2344544 58999999999999864311100 1110 0123456788788888
Q ss_pred HHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeec
Q psy1220 147 LEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALAS 193 (337)
Q Consensus 147 l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~ 193 (337)
+.++ ...+.++++++||||||.+|+.++.++|+...++++.
T Consensus 98 l~~~------~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~ 138 (249)
T PRK10566 98 IREE------GWLLDDRLAVGGASMGGMTALGIMARHPWVKCVASLM 138 (249)
T ss_pred HHhc------CCcCccceeEEeecccHHHHHHHHHhCCCeeEEEEee
Confidence 7653 1234479999999999999999999999865554443
No 58
>PRK13604 luxD acyl transferase; Provisional
Probab=99.27 E-value=3.7e-11 Score=110.40 Aligned_cols=131 Identities=13% Similarity=0.077 Sum_probs=82.6
Q ss_pred ecCCCCCCCCCeEeeEEEEeCcccCCCCCCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEeccccc-ccCCCCCC
Q psy1220 41 KLDHFTYVSNQTFPLKYLINDEFWDEDGGAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYY-GSSLPFGP 119 (337)
Q Consensus 41 ~~dhf~~~~~~tf~qry~~~~~~~~~~~~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~-G~S~~~~~ 119 (337)
++||--..+++.-..-+|....-....+...||+.||..+....+. . +.+...+.|+.|+.+|.||+ |+|..
T Consensus 9 ~~~~~~~~~dG~~L~Gwl~~P~~~~~~~~~~vIi~HGf~~~~~~~~---~-~A~~La~~G~~vLrfD~rg~~GeS~G--- 81 (307)
T PRK13604 9 TIDHVICLENGQSIRVWETLPKENSPKKNNTILIASGFARRMDHFA---G-LAEYLSSNGFHVIRYDSLHHVGLSSG--- 81 (307)
T ss_pred chhheEEcCCCCEEEEEEEcCcccCCCCCCEEEEeCCCCCChHHHH---H-HHHHHHHCCCEEEEecCCCCCCCCCC---
Confidence 5677644333322223333332111121456889999776532211 1 33333356999999999988 99964
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcc
Q psy1220 120 KSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAP 196 (337)
Q Consensus 120 ~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap 196 (337)
+.+..+......|+.+.+++++.+ ...++.|+||||||.+|...|.+.| ++++|+.++.
T Consensus 82 -------~~~~~t~s~g~~Dl~aaid~lk~~---------~~~~I~LiG~SmGgava~~~A~~~~--v~~lI~~sp~ 140 (307)
T PRK13604 82 -------TIDEFTMSIGKNSLLTVVDWLNTR---------GINNLGLIAASLSARIAYEVINEID--LSFLITAVGV 140 (307)
T ss_pred -------ccccCcccccHHHHHHHHHHHHhc---------CCCceEEEEECHHHHHHHHHhcCCC--CCEEEEcCCc
Confidence 222233444579999999999864 2268999999999999977776544 7888877644
No 59
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=99.26 E-value=6.6e-11 Score=114.05 Aligned_cols=109 Identities=14% Similarity=0.026 Sum_probs=77.0
Q ss_pred CCcEEEEeCCCCCc--cchhhhhHHHHHHHHhc-CCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAI--ETFAENLGFLWESAKRF-SARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQ 145 (337)
Q Consensus 69 ~~pivl~hGg~g~~--~~~~~~~~~~~~la~~~-~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~ 145 (337)
++++|++||..++. ..|... +...+.++. +++||++|+||+|.|..... . .......++++++++
T Consensus 41 ~ptvIlIHG~~~s~~~~~w~~~--l~~al~~~~~d~nVI~VDw~g~g~s~y~~a--------~--~~t~~vg~~la~lI~ 108 (442)
T TIGR03230 41 TKTFIVIHGWTVTGMFESWVPK--LVAALYEREPSANVIVVDWLSRAQQHYPTS--------A--AYTKLVGKDVAKFVN 108 (442)
T ss_pred CCeEEEECCCCcCCcchhhHHH--HHHHHHhccCCCEEEEEECCCcCCCCCccc--------c--ccHHHHHHHHHHHHH
Confidence 67899999976542 122211 122233222 57899999999998754211 0 124667788999999
Q ss_pred HHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCc
Q psy1220 146 SLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSA 195 (337)
Q Consensus 146 ~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sa 195 (337)
.|.+. + ..+..+++++||||||.+|..++.++|++|.++++..+
T Consensus 109 ~L~~~-----~-gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDP 152 (442)
T TIGR03230 109 WMQEE-----F-NYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDP 152 (442)
T ss_pred HHHHh-----h-CCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcC
Confidence 88653 2 22347999999999999999999999999999996553
No 60
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.20 E-value=1.5e-10 Score=112.07 Aligned_cols=107 Identities=17% Similarity=0.193 Sum_probs=72.6
Q ss_pred CCcEEEEeCCCCCcc--chhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIE--TFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQS 146 (337)
Q Consensus 69 ~~pivl~hGg~g~~~--~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~ 146 (337)
..|+|++|||.++.. .|.. +...++ +.|+.|+++|+||||.|.... .. ....... ..+++.
T Consensus 193 ~~P~Vli~gG~~~~~~~~~~~---~~~~La-~~Gy~vl~~D~pG~G~s~~~~-~~---------~d~~~~~---~avld~ 255 (414)
T PRK05077 193 PFPTVLVCGGLDSLQTDYYRL---FRDYLA-PRGIAMLTIDMPSVGFSSKWK-LT---------QDSSLLH---QAVLNA 255 (414)
T ss_pred CccEEEEeCCcccchhhhHHH---HHHHHH-hCCCEEEEECCCCCCCCCCCC-cc---------ccHHHHH---HHHHHH
Confidence 568888888876532 2221 223344 558999999999999996531 00 0111122 344555
Q ss_pred HHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcccc
Q psy1220 147 LEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMF 198 (337)
Q Consensus 147 l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~ 198 (337)
+... +..+..++.++||||||++|+.++.++|++++++|+.++++.
T Consensus 256 l~~~------~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~ 301 (414)
T PRK05077 256 LPNV------PWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVH 301 (414)
T ss_pred HHhC------cccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccc
Confidence 5432 222447999999999999999999999999999998887753
No 61
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=99.20 E-value=9.2e-11 Score=107.53 Aligned_cols=109 Identities=13% Similarity=0.051 Sum_probs=77.2
Q ss_pred CCcEEEEeCCCCCc-cchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAI-ETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSL 147 (337)
Q Consensus 69 ~~pivl~hGg~g~~-~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l 147 (337)
+.++|++||..++. ..|... +...+..+.+++||++|+++++.+... ....+.+...++++.+++.+
T Consensus 36 ~p~vilIHG~~~~~~~~~~~~--l~~~ll~~~~~nVi~vD~~~~~~~~y~----------~a~~~~~~v~~~la~~l~~L 103 (275)
T cd00707 36 RPTRFIIHGWTSSGEESWISD--LRKAYLSRGDYNVIVVDWGRGANPNYP----------QAVNNTRVVGAELAKFLDFL 103 (275)
T ss_pred CCcEEEEcCCCCCCCCcHHHH--HHHHHHhcCCCEEEEEECccccccChH----------HHHHhHHHHHHHHHHHHHHH
Confidence 57799999987775 333221 223344445689999999998433210 01123556677888888888
Q ss_pred HhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCc
Q psy1220 148 EDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSA 195 (337)
Q Consensus 148 ~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sa 195 (337)
.+. . ..+.++++++||||||.+|..++.++|+++.++++..+
T Consensus 104 ~~~-----~-g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDP 145 (275)
T cd00707 104 VDN-----T-GLSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDP 145 (275)
T ss_pred HHh-----c-CCChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecC
Confidence 754 1 22346899999999999999999999999999997653
No 62
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.19 E-value=3.6e-10 Score=103.68 Aligned_cols=119 Identities=14% Similarity=0.058 Sum_probs=74.8
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecc--cccccCCCCCCCC-------CC---CCcccccCCHHH-
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEH--RYYGSSLPFGPKS-------LS---SPRLSGYLTVAQ- 135 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~--rg~G~S~~~~~~s-------~~---~~~~~~~~t~~~- 135 (337)
.+.|+++||.+++...|.... .+..++.+.|+.||++|. ||+|.+....... +. ..+.-..++...
T Consensus 42 ~P~vvllHG~~~~~~~~~~~~-~~~~la~~~g~~Vv~Pd~~~~g~~~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~ 120 (275)
T TIGR02821 42 VPVLWYLSGLTCTHENFMIKA-GAQRFAAEHGLALVAPDTSPRGTGIAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYSY 120 (275)
T ss_pred CCEEEEccCCCCCccHHHhhh-HHHHHHhhcCcEEEEeCCCCCcCCCCCCcccccccCCccccccCCcCcccccchHHHH
Confidence 345788999988877775432 256788888999999998 6665432100000 00 000000112222
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCccc
Q psy1220 136 TLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPM 197 (337)
Q Consensus 136 ~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~ 197 (337)
.++|+..+++... ..+..+++++||||||++|+.++.++|+.+.++++.++..
T Consensus 121 ~~~~l~~~~~~~~---------~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~ 173 (275)
T TIGR02821 121 IVQELPALVAAQF---------PLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAFAPIV 173 (275)
T ss_pred HHHHHHHHHHhhC---------CCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEECCcc
Confidence 2455555544321 1233689999999999999999999999999999776543
No 63
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.19 E-value=6.1e-11 Score=104.02 Aligned_cols=102 Identities=21% Similarity=0.245 Sum_probs=77.2
Q ss_pred CcEEEEeCCCCCccchhhhhHHHHHHHHhc-CCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 70 APVFFYCGNEDAIETFAENLGFLWESAKRF-SARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 70 ~pivl~hGg~g~~~~~~~~~~~~~~la~~~-~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
++|+++||++++...|... ...+.... .++|+.+|+||||.|.. . ..+....++|+..+++.++
T Consensus 22 ~~i~~~hg~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~g~g~s~~--~----------~~~~~~~~~~~~~~~~~~~ 86 (282)
T COG0596 22 PPLVLLHGFPGSSSVWRPV---FKVLPALAARYRVIAPDLRGHGRSDP--A----------GYSLSAYADDLAALLDALG 86 (282)
T ss_pred CeEEEeCCCCCchhhhHHH---HHHhhccccceEEEEecccCCCCCCc--c----------cccHHHHHHHHHHHHHHhC
Confidence 4899999999887766541 12232221 17899999999999971 0 1124445888888888776
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcccc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMF 198 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~ 198 (337)
. .+++++||||||.++..++.++|+.+.++++.+++..
T Consensus 87 -------~-----~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~~ 124 (282)
T COG0596 87 -------L-----EKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAPP 124 (282)
T ss_pred -------C-----CceEEEEecccHHHHHHHHHhcchhhheeeEecCCCC
Confidence 3 4699999999999999999999999999998876643
No 64
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.16 E-value=2.9e-10 Score=107.82 Aligned_cols=109 Identities=13% Similarity=0.198 Sum_probs=80.4
Q ss_pred CCcEEEEeCCCCCccchh--hhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHH-HHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFA--ENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLA-DFVDVIQ 145 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~--~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~-D~~~~i~ 145 (337)
+.||+++||...+...+. +...+...|++ .|++|+++|+||+|.|... .+.++.+. |+.+.++
T Consensus 62 ~~pvl~v~~~~~~~~~~d~~~~~~~~~~L~~-~G~~V~~~D~~g~g~s~~~-------------~~~~d~~~~~~~~~v~ 127 (350)
T TIGR01836 62 KTPLLIVYALVNRPYMLDLQEDRSLVRGLLE-RGQDVYLIDWGYPDRADRY-------------LTLDDYINGYIDKCVD 127 (350)
T ss_pred CCcEEEeccccccceeccCCCCchHHHHHHH-CCCeEEEEeCCCCCHHHhc-------------CCHHHHHHHHHHHHHH
Confidence 568999998533222221 12334555554 5899999999999987532 34666664 4788888
Q ss_pred HHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCccccc
Q psy1220 146 SLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQ 199 (337)
Q Consensus 146 ~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~~ 199 (337)
.+.+. . +..+++++||||||++++.++.++|+.|+++++.++|+..
T Consensus 128 ~l~~~-----~---~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~ 173 (350)
T TIGR01836 128 YICRT-----S---KLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDF 173 (350)
T ss_pred HHHHH-----h---CCCcccEEEECHHHHHHHHHHHhCchheeeEEEecccccc
Confidence 88765 2 3368999999999999999999999999999988888754
No 65
>PRK11071 esterase YqiA; Provisional
Probab=99.11 E-value=3.9e-10 Score=97.78 Aligned_cols=89 Identities=15% Similarity=0.243 Sum_probs=64.9
Q ss_pred CcEEEEeCCCCCccchhhhhHHHHHHHHh--cCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHH
Q psy1220 70 APVFFYCGNEDAIETFAENLGFLWESAKR--FSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSL 147 (337)
Q Consensus 70 ~pivl~hGg~g~~~~~~~~~~~~~~la~~--~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l 147 (337)
.+||++||..++...|... .+..+..+ .+++|+++|+||||. ++.+++.++++.+
T Consensus 2 p~illlHGf~ss~~~~~~~--~~~~~l~~~~~~~~v~~~dl~g~~~---------------------~~~~~l~~l~~~~ 58 (190)
T PRK11071 2 STLLYLHGFNSSPRSAKAT--LLKNWLAQHHPDIEMIVPQLPPYPA---------------------DAAELLESLVLEH 58 (190)
T ss_pred CeEEEECCCCCCcchHHHH--HHHHHHHHhCCCCeEEeCCCCCCHH---------------------HHHHHHHHHHHHc
Confidence 3799999999988877642 23343332 367899999999852 2566666776655
Q ss_pred HhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcc
Q psy1220 148 EDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAP 196 (337)
Q Consensus 148 ~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap 196 (337)
. . .+++++||||||++|+.++.++|. .+|+.+++
T Consensus 59 ~-------~-----~~~~lvG~S~Gg~~a~~~a~~~~~---~~vl~~~~ 92 (190)
T PRK11071 59 G-------G-----DPLGLVGSSLGGYYATWLSQCFML---PAVVVNPA 92 (190)
T ss_pred C-------C-----CCeEEEEECHHHHHHHHHHHHcCC---CEEEECCC
Confidence 4 2 689999999999999999999994 34555544
No 66
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.09 E-value=5.3e-10 Score=91.50 Aligned_cols=93 Identities=19% Similarity=0.179 Sum_probs=68.6
Q ss_pred cEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhh
Q psy1220 71 PVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDA 150 (337)
Q Consensus 71 pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~ 150 (337)
+||++||+.++...|.. +...++++ |+.|+.+|+|++|.+... .++..+++.+...
T Consensus 1 ~vv~~HG~~~~~~~~~~---~~~~l~~~-G~~v~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~ 56 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQP---LAEALAEQ-GYAVVAFDYPGHGDSDGA--------------------DAVERVLADIRAG 56 (145)
T ss_dssp EEEEECTTTTTTHHHHH---HHHHHHHT-TEEEEEESCTTSTTSHHS--------------------HHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHH---HHHHHHHC-CCEEEEEecCCCCccchh--------------------HHHHHHHHHHHhh
Confidence 68999999888665543 44556665 999999999999988421 1333344433221
Q ss_pred hhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCc
Q psy1220 151 SRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSA 195 (337)
Q Consensus 151 ~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sa 195 (337)
.. +..+++++|||+||.+++.++.+. ..++++|+.++
T Consensus 57 -----~~--~~~~i~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~ 93 (145)
T PF12695_consen 57 -----YP--DPDRIILIGHSMGGAIAANLAARN-PRVKAVVLLSP 93 (145)
T ss_dssp -----HC--TCCEEEEEEETHHHHHHHHHHHHS-TTESEEEEESE
T ss_pred -----cC--CCCcEEEEEEccCcHHHHHHhhhc-cceeEEEEecC
Confidence 11 337999999999999999999999 67999998875
No 67
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.09 E-value=4.7e-09 Score=100.76 Aligned_cols=141 Identities=18% Similarity=0.187 Sum_probs=88.3
Q ss_pred CCCCCCCCCeEe---eEEEEeCcccCCCCCCcEEEEeCCCCCccch---h---hhhHHHHHHHH------hcCCcEEEec
Q psy1220 43 DHFTYVSNQTFP---LKYLINDEFWDEDGGAPVFFYCGNEDAIETF---A---ENLGFLWESAK------RFSARVVLVE 107 (337)
Q Consensus 43 dhf~~~~~~tf~---qry~~~~~~~~~~~~~pivl~hGg~g~~~~~---~---~~~~~~~~la~------~~~~~vi~~D 107 (337)
.-|..+++++.+ ..|-.-.+-.. .+...||+.|+..|+...- . ...|+|..+.- ...+-||++|
T Consensus 28 ~~f~l~~G~~l~~~~~~Y~t~G~ln~-~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n 106 (389)
T PRK06765 28 KEFTTEGGRTIPDVQMGYETYGTLNR-AKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTD 106 (389)
T ss_pred CCEEccCCCCcCCceEEEEeccccCC-CCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEec
Confidence 446666666643 33432222111 1134677889887764321 0 11343443432 2346899999
Q ss_pred ccccccCC-C----CCCCCCCC--Cc----ccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEE-EEecchhHHH
Q psy1220 108 HRYYGSSL-P----FGPKSLSS--PR----LSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVI-AFGGSYGGML 175 (337)
Q Consensus 108 ~rg~G~S~-~----~~~~s~~~--~~----~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~i-l~G~S~GG~l 175 (337)
..|-|.|. | +++.|..+ .. +...+|+++.++++..++++++ + .++. ++||||||++
T Consensus 107 ~lG~~~~~~p~~g~tgp~s~~p~tg~~~~~~fP~~t~~d~~~~~~~ll~~lg-------i-----~~~~~vvG~SmGG~i 174 (389)
T PRK06765 107 TLCNVQVKDPNVITTGPASINPKTGKPYGMDFPVVTILDFVRVQKELIKSLG-------I-----ARLHAVMGPSMGGMQ 174 (389)
T ss_pred ccCCCcCCCCCCCCCCCCCCCcCCCCccCCCCCcCcHHHHHHHHHHHHHHcC-------C-----CCceEEEEECHHHHH
Confidence 99876532 2 01111110 00 1234889999999999998877 4 5775 9999999999
Q ss_pred HHHHHHhCCCceeEeeecCcc
Q psy1220 176 AFWLRLKYPHIVQGALASSAP 196 (337)
Q Consensus 176 a~~~~~~~P~~v~~~v~~sap 196 (337)
|+.++.+||++|+++|+.++.
T Consensus 175 al~~a~~~P~~v~~lv~ia~~ 195 (389)
T PRK06765 175 AQEWAVHYPHMVERMIGVIGN 195 (389)
T ss_pred HHHHHHHChHhhheEEEEecC
Confidence 999999999999999966543
No 68
>KOG4391|consensus
Probab=99.07 E-value=2.8e-10 Score=97.50 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=82.0
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
..+++++||+.|+...+... ++-+-.+++..|+.++.||||+|+..+.. +-..-|..+.++++-
T Consensus 78 ~pTlLyfh~NAGNmGhr~~i---~~~fy~~l~mnv~ivsYRGYG~S~GspsE-------------~GL~lDs~avldyl~ 141 (300)
T KOG4391|consen 78 RPTLLYFHANAGNMGHRLPI---ARVFYVNLKMNVLIVSYRGYGKSEGSPSE-------------EGLKLDSEAVLDYLM 141 (300)
T ss_pred CceEEEEccCCCcccchhhH---HHHHHHHcCceEEEEEeeccccCCCCccc-------------cceeccHHHHHHHHh
Confidence 56789999999998777653 55566778889999999999999864321 113346677778877
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeec
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALAS 193 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~ 193 (337)
.+ +..++.|++++|.|.||++|..+|.+.-+++.++++-
T Consensus 142 t~------~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivE 180 (300)
T KOG4391|consen 142 TR------PDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVE 180 (300)
T ss_pred cC------ccCCcceEEEEecccCCeeEEEeeccchhheeeeeee
Confidence 54 4556789999999999999999999999999999954
No 69
>PLN02442 S-formylglutathione hydrolase
Probab=99.05 E-value=3.2e-09 Score=97.76 Aligned_cols=144 Identities=15% Similarity=0.131 Sum_probs=82.9
Q ss_pred CCCCCCCCCeEeeEEEEeCcccCCCCCCc-EEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCC--
Q psy1220 43 DHFTYVSNQTFPLKYLINDEFWDEDGGAP-VFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGP-- 119 (337)
Q Consensus 43 dhf~~~~~~tf~qry~~~~~~~~~~~~~p-ivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~-- 119 (337)
.++.+.-++....+.+... ..... +.| |+|+||+.++...|....+ +..++...|+.||++|.+++|.-.+...
T Consensus 22 ~~~s~~l~~~~~~~vy~P~-~~~~~-~~Pvv~~lHG~~~~~~~~~~~~~-~~~~~~~~g~~Vv~pd~~~~g~~~~~~~~~ 98 (283)
T PLN02442 22 KHFSSTLGCSMTFSVYFPP-ASDSG-KVPVLYWLSGLTCTDENFIQKSG-AQRAAAARGIALVAPDTSPRGLNVEGEADS 98 (283)
T ss_pred EEeccccCCceEEEEEcCC-cccCC-CCCEEEEecCCCcChHHHHHhhh-HHHHHhhcCeEEEecCCCCCCCCCCCCccc
Confidence 3444333444444444444 22222 345 6789998887766654333 4456667789999999887762111000
Q ss_pred --CC-----CC--CCcccccCC-HHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeE
Q psy1220 120 --KS-----LS--SPRLSGYLT-VAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQG 189 (337)
Q Consensus 120 --~s-----~~--~~~~~~~~t-~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~ 189 (337)
.+ +. .....+... .+...+++...++..... + +..+++++||||||.+|++++.++|+++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~-----~---~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~ 170 (283)
T PLN02442 99 WDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNFDQ-----L---DTSRASIFGHSMGGHGALTIYLKNPDKYKS 170 (283)
T ss_pred cccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHHHh-----c---CCCceEEEEEChhHHHHHHHHHhCchhEEE
Confidence 00 00 000000001 122445555555544322 2 336899999999999999999999999999
Q ss_pred eeecCccc
Q psy1220 190 ALASSAPM 197 (337)
Q Consensus 190 ~v~~sap~ 197 (337)
+++.++..
T Consensus 171 ~~~~~~~~ 178 (283)
T PLN02442 171 VSAFAPIA 178 (283)
T ss_pred EEEECCcc
Confidence 98877654
No 70
>PLN02872 triacylglycerol lipase
Probab=99.02 E-value=4.7e-10 Score=107.74 Aligned_cols=116 Identities=17% Similarity=0.093 Sum_probs=78.0
Q ss_pred CCcEEEEeCCCCCccchhhh---hHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHH-HHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAEN---LGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTL-ADFVDVI 144 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~---~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~-~D~~~~i 144 (337)
+.||+|+||..++...|..+ .++...|+ +.|++|+++|.||+|.|......+.. ....-.++.++.. .|+.+++
T Consensus 74 ~~~Vll~HGl~~ss~~w~~~~~~~sla~~La-~~GydV~l~n~RG~~~s~gh~~~~~~-~~~fw~~s~~e~a~~Dl~a~i 151 (395)
T PLN02872 74 GPPVLLQHGLFMAGDAWFLNSPEQSLGFILA-DHGFDVWVGNVRGTRWSYGHVTLSEK-DKEFWDWSWQELALYDLAEMI 151 (395)
T ss_pred CCeEEEeCcccccccceeecCcccchHHHHH-hCCCCcccccccccccccCCCCCCcc-chhccCCcHHHHHHHHHHHHH
Confidence 46899999998887777432 22223355 45899999999999876432211110 0011135676666 8999999
Q ss_pred HHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCC---ceeEeeecCcc
Q psy1220 145 QSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPH---IVQGALASSAP 196 (337)
Q Consensus 145 ~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~---~v~~~v~~sap 196 (337)
+++.+. ...+++++||||||.++.. +..+|+ .|+.+++.++.
T Consensus 152 d~i~~~---------~~~~v~~VGhS~Gg~~~~~-~~~~p~~~~~v~~~~~l~P~ 196 (395)
T PLN02872 152 HYVYSI---------TNSKIFIVGHSQGTIMSLA-ALTQPNVVEMVEAAALLCPI 196 (395)
T ss_pred HHHHhc---------cCCceEEEEECHHHHHHHH-HhhChHHHHHHHHHHHhcch
Confidence 999743 1268999999999999984 446887 46666665533
No 71
>KOG1552|consensus
Probab=98.95 E-value=2.5e-09 Score=94.54 Aligned_cols=100 Identities=21% Similarity=0.283 Sum_probs=81.4
Q ss_pred CcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHh
Q psy1220 70 APVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLED 149 (337)
Q Consensus 70 ~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~ 149 (337)
..+++.||+..+.+ ....+...+...++..|+.+|.+|||.|...+. -....+|+.+..++|++
T Consensus 61 ~~lly~hGNa~Dlg---q~~~~~~~l~~~ln~nv~~~DYSGyG~S~G~ps-------------E~n~y~Di~avye~Lr~ 124 (258)
T KOG1552|consen 61 PTLLYSHGNAADLG---QMVELFKELSIFLNCNVVSYDYSGYGRSSGKPS-------------ERNLYADIKAVYEWLRN 124 (258)
T ss_pred eEEEEcCCcccchH---HHHHHHHHHhhcccceEEEEecccccccCCCcc-------------cccchhhHHHHHHHHHh
Confidence 56889999876654 333356667777889999999999999986431 22478999999999997
Q ss_pred hhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecC
Q psy1220 150 ASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASS 194 (337)
Q Consensus 150 ~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~s 194 (337)
. + + ++++++|+|+|+|...+..+|.++| ++++|+.|
T Consensus 125 ~-----~-g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~S 160 (258)
T KOG1552|consen 125 R-----Y-G-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHS 160 (258)
T ss_pred h-----c-C-CCceEEEEEecCCchhhhhHhhcCC--cceEEEec
Confidence 6 3 3 5689999999999999999999999 88999877
No 72
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=98.93 E-value=7.8e-09 Score=103.91 Aligned_cols=109 Identities=13% Similarity=-0.008 Sum_probs=76.9
Q ss_pred CcEEEEeCCCCCccc-hhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 70 APVFFYCGNEDAIET-FAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 70 ~pivl~hGg~g~~~~-~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
+.||++||...+... +.........++ +.|+.|+++|+||+|.|.... ..++ .+.++|+.++++++.
T Consensus 23 P~Il~~~gyg~~~~~~~~~~~~~~~~l~-~~Gy~vv~~D~RG~g~S~g~~----------~~~~-~~~~~D~~~~i~~l~ 90 (550)
T TIGR00976 23 PVILSRTPYGKDAGLRWGLDKTEPAWFV-AQGYAVVIQDTRGRGASEGEF----------DLLG-SDEAADGYDLVDWIA 90 (550)
T ss_pred CEEEEecCCCCchhhccccccccHHHHH-hCCcEEEEEeccccccCCCce----------EecC-cccchHHHHHHHHHH
Confidence 347778886544320 001111123344 459999999999999997521 1122 467899999999998
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCccc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPM 197 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~ 197 (337)
.+ +.. +.++.++||||||.+++.++..+|+.+++++..++..
T Consensus 91 ~q------~~~-~~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~ 132 (550)
T TIGR00976 91 KQ------PWC-DGNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVW 132 (550)
T ss_pred hC------CCC-CCcEEEEEeChHHHHHHHHhccCCCceeEEeecCccc
Confidence 64 222 3699999999999999999999999999999766543
No 73
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=98.93 E-value=5.1e-09 Score=107.03 Aligned_cols=108 Identities=18% Similarity=0.135 Sum_probs=71.6
Q ss_pred cEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCC---CCCccccc----------CCHHHHH
Q psy1220 71 PVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSL---SSPRLSGY----------LTVAQTL 137 (337)
Q Consensus 71 pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~---~~~~~~~~----------~t~~~~~ 137 (337)
+|+++||..++...|.. +...|++ .|++|+++||||||+|....+.+. .....+.| -+.+|.+
T Consensus 451 ~VVllHG~~g~~~~~~~---lA~~La~-~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~rQ~v 526 (792)
T TIGR03502 451 VVIYQHGITGAKENALA---FAGTLAA-AGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLRQSI 526 (792)
T ss_pred EEEEeCCCCCCHHHHHH---HHHHHHh-CCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCHHHHH
Confidence 68999998777665543 2344543 478999999999999943211000 00111222 2679999
Q ss_pred HHHHHHHHHHH------hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCC
Q psy1220 138 ADFVDVIQSLE------DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYP 184 (337)
Q Consensus 138 ~D~~~~i~~l~------~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P 184 (337)
.|+..++..++ .+ . ..+...+..|++++||||||+++..++....
T Consensus 527 ~Dll~L~~~l~~~~~~~~~-~-~~~~~~~~~~V~~lGHSLGgiig~~~~~~an 577 (792)
T TIGR03502 527 LDLLGLRLSLNGSALAGAP-L-SGINVIDGSKVSFLGHSLGGIVGTSFIAYAN 577 (792)
T ss_pred HHHHHHHHHHhcccccccc-c-ccccCCCCCcEEEEecCHHHHHHHHHHHhcC
Confidence 99999999998 11 0 0011134579999999999999999997533
No 74
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=98.91 E-value=7.8e-09 Score=91.17 Aligned_cols=117 Identities=22% Similarity=0.184 Sum_probs=79.9
Q ss_pred Cc-EEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 70 AP-VFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 70 ~p-ivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
.| ||++||..++...+...++ +.++|++.|+.|+.+|...-.....-=+ ... ....... .-.+.++.+++++.
T Consensus 16 ~PLVv~LHG~~~~a~~~~~~s~-~~~lAd~~GfivvyP~~~~~~~~~~cw~-w~~---~~~~~g~-~d~~~i~~lv~~v~ 89 (220)
T PF10503_consen 16 VPLVVVLHGCGQSAEDFAAGSG-WNALADREGFIVVYPEQSRRANPQGCWN-WFS---DDQQRGG-GDVAFIAALVDYVA 89 (220)
T ss_pred CCEEEEeCCCCCCHHHHHhhcC-HHHHhhcCCeEEEcccccccCCCCCccc-ccc---cccccCc-cchhhHHHHHHhHh
Confidence 45 6889999999888776666 7889999999999999643211110000 000 0000001 12345667777777
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcccc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMF 198 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~ 198 (337)
.+ + ..+..++.+.|+|.||+++..++..||+++.++...+++..
T Consensus 90 ~~-----~-~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~ 133 (220)
T PF10503_consen 90 AR-----Y-NIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPY 133 (220)
T ss_pred hh-----c-ccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeeccccc
Confidence 65 3 55668999999999999999999999999998887666543
No 75
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=98.91 E-value=2.1e-08 Score=89.86 Aligned_cols=105 Identities=15% Similarity=0.195 Sum_probs=84.5
Q ss_pred CcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHh
Q psy1220 70 APVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLED 149 (337)
Q Consensus 70 ~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~ 149 (337)
++||=+||.+|+...|.. +.....+.|.|+|.+.+||+|.+....+.. ++.++-..-+.++++.+..
T Consensus 36 gTVv~~hGsPGSH~DFkY----i~~~l~~~~iR~I~iN~PGf~~t~~~~~~~---------~~n~er~~~~~~ll~~l~i 102 (297)
T PF06342_consen 36 GTVVAFHGSPGSHNDFKY----IRPPLDEAGIRFIGINYPGFGFTPGYPDQQ---------YTNEERQNFVNALLDELGI 102 (297)
T ss_pred eeEEEecCCCCCccchhh----hhhHHHHcCeEEEEeCCCCCCCCCCCcccc---------cChHHHHHHHHHHHHHcCC
Confidence 358889999999877754 777778889999999999999998765443 4466666777778887773
Q ss_pred hhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcccccc
Q psy1220 150 ASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQT 200 (337)
Q Consensus 150 ~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~~~ 200 (337)
+ .+++.+|||.|+-.|+.++..+| ..|+++.++|-...
T Consensus 103 ~-----------~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~G~r~ 140 (297)
T PF06342_consen 103 K-----------GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPPGLRP 140 (297)
T ss_pred C-----------CceEEEEeccchHHHHHHHhcCc--cceEEEecCCcccc
Confidence 3 79999999999999999999997 56888887775544
No 76
>PLN00021 chlorophyllase
Probab=98.89 E-value=1.3e-08 Score=94.95 Aligned_cols=105 Identities=17% Similarity=0.074 Sum_probs=65.5
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
..+|||+||+.++...|.. +...|++ .|+.|+++|+++++.+... ..++|..++++++.
T Consensus 52 ~PvVv~lHG~~~~~~~y~~---l~~~Las-~G~~VvapD~~g~~~~~~~-----------------~~i~d~~~~~~~l~ 110 (313)
T PLN00021 52 YPVLLFLHGYLLYNSFYSQ---LLQHIAS-HGFIVVAPQLYTLAGPDGT-----------------DEIKDAAAVINWLS 110 (313)
T ss_pred CCEEEEECCCCCCcccHHH---HHHHHHh-CCCEEEEecCCCcCCCCch-----------------hhHHHHHHHHHHHH
Confidence 3558999998877554433 3455654 4899999999986532210 11233333444433
Q ss_pred hhhhhhccC---CCCCCCEEEEecchhHHHHHHHHHhCCC-----ceeEeeecCc
Q psy1220 149 DASRLRIGA---AFKPHPVIAFGGSYGGMLAFWLRLKYPH-----IVQGALASSA 195 (337)
Q Consensus 149 ~~~~~~~~~---~~~~~~~il~G~S~GG~la~~~~~~~P~-----~v~~~v~~sa 195 (337)
+. ....++ ..+..+++++||||||.+|+.++.++|+ .+.++++.+.
T Consensus 111 ~~-l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldP 164 (313)
T PLN00021 111 SG-LAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDP 164 (313)
T ss_pred hh-hhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecc
Confidence 21 000000 1233689999999999999999999985 4677776653
No 77
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=98.86 E-value=1.5e-07 Score=85.90 Aligned_cols=229 Identities=14% Similarity=0.117 Sum_probs=136.8
Q ss_pred cEEEEeCCCCCccchhhhhHHHHHHHHhc--CCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 71 PVFFYCGNEDAIETFAENLGFLWESAKRF--SARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 71 pivl~hGg~g~~~~~~~~~~~~~~la~~~--~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
-|+++-|++|-.+-|.. |+..|.+.+ ++.|+++.|.||-.+......+ .+.+.++.++.++--.++++.+.
T Consensus 4 li~~IPGNPGlv~fY~~---Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~~~----~~~~~~sL~~QI~hk~~~i~~~~ 76 (266)
T PF10230_consen 4 LIVFIPGNPGLVEFYEE---FLSALYEKLNPQFEILGISHAGHSTSPSNSKFS----PNGRLFSLQDQIEHKIDFIKELI 76 (266)
T ss_pred EEEEECCCCChHHHHHH---HHHHHHHhCCCCCeeEEecCCCCcCCccccccc----CCCCccCHHHHHHHHHHHHHHHh
Confidence 47889999998776655 677777764 5689999999998876542211 14567899999999999999887
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCC---CceeEeeecCccccccCCCCChhHHHHHHHHHHhccCcccH
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYP---HIVQGALASSAPMFQTNDLAPCDIYYKEVTKIYRDVSPKCE 225 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P---~~v~~~v~~sap~~~~~~~~~~~~~~~~v~~~~~~~~~~c~ 225 (337)
.+ . ..++.+++++|||.|+++++.+..++| ..|.++++.-+.+...... ..-.....+ +.. ..-..
T Consensus 77 ~~-----~-~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi~~ia~S-p~G~~l~~~---~~~-~~~~~ 145 (266)
T PF10230_consen 77 PQ-----K-NKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTIEDIAKS-PNGRRLTPL---LFS-PPPLV 145 (266)
T ss_pred hh-----h-cCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCccccccCC-chhHHHHHH---Hhh-ccHHH
Confidence 53 1 113479999999999999999999999 7888888776554443321 111111111 000 00000
Q ss_pred HHHHHHHHHHHHhhhCCchhHHHHH-hcC--------CCCCCCCHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCCCC--
Q psy1220 226 ENIRNSWTFINTELQTDSGRVEFSR-EWN--------LCSSLKTQVDVAIFKRYLSDMYTTMAMTNYPYPSNFLTPLP-- 294 (337)
Q Consensus 226 ~~~~~~~~~i~~~~~~~~~~~~l~~-~f~--------~~~~~~~~~di~~~~~~~~~~~~~~am~~y~~~~~~l~~~~-- 294 (337)
. +......+-.++... ....+-+ ..+ ++..+.++.-+.+.+.|+.+.+... .+.. ..+++....
T Consensus 146 ~-~~~~~~~l~~~lP~~-~~~~lv~~~~~~~~~~~~~t~~~l~~~~~v~qaL~Ma~~Em~~I--~~~d-~~~~~~~~~~~ 220 (266)
T PF10230_consen 146 W-LASFLSFLLSLLPES-VLRWLVRWVMGFPPPAVEATTKFLLSPRVVRQALYMARDEMREI--REDD-NDELIKHHNEN 220 (266)
T ss_pred H-HHHHHHHHHHHCCHH-HHHHHHHHHcCCChHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--cCcc-hHHHHHHhccC
Confidence 0 000011111111110 1111111 111 1112446777888888877654332 2222 233333221
Q ss_pred CCchhhHHHHHhhccchHHHHHHHhcCC
Q psy1220 295 GNPVKVDVAIFKRYLSDMYTTMAMTNYP 322 (337)
Q Consensus 295 ~~pv~~icg~~~~~~~d~y~~~a~~~~p 322 (337)
...+....|.-|.|.++.+...++..||
T Consensus 221 ~~kl~f~fg~~D~Wvp~~~~~~l~~~~~ 248 (266)
T PF10230_consen 221 GDKLWFYFGQNDHWVPNETRDELIERYP 248 (266)
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHcC
Confidence 2346666688889999999999999998
No 78
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.86 E-value=2.5e-08 Score=98.88 Aligned_cols=109 Identities=12% Similarity=0.082 Sum_probs=75.0
Q ss_pred CCcEEEEeCCCCCccchh--hhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHH-HHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFA--ENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTL-ADFVDVIQ 145 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~--~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~-~D~~~~i~ 145 (337)
+.|||++||.......+. +..+++..|+++ |++|+++|+||+|.|... ++.++.+ +++.+.++
T Consensus 188 ~~PlLiVp~~i~k~yilDL~p~~Slv~~L~~q-Gf~V~~iDwrgpg~s~~~-------------~~~ddY~~~~i~~al~ 253 (532)
T TIGR01838 188 KTPLLIVPPWINKYYILDLRPQNSLVRWLVEQ-GHTVFVISWRNPDASQAD-------------KTFDDYIRDGVIAALE 253 (532)
T ss_pred CCcEEEECcccccceeeecccchHHHHHHHHC-CcEEEEEECCCCCccccc-------------CChhhhHHHHHHHHHH
Confidence 579999999765544332 223556666664 899999999999988542 1233333 34556666
Q ss_pred HHHhhhhhhccCCCCCCCEEEEecchhHHHH----HHHHHhC-CCceeEeeecCccccc
Q psy1220 146 SLEDASRLRIGAAFKPHPVIAFGGSYGGMLA----FWLRLKY-PHIVQGALASSAPMFQ 199 (337)
Q Consensus 146 ~l~~~~~~~~~~~~~~~~~il~G~S~GG~la----~~~~~~~-P~~v~~~v~~sap~~~ 199 (337)
.+.+. . +..+++++||||||.++ +.++.++ |++|+++++.++++..
T Consensus 254 ~v~~~-----~---g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df 304 (532)
T TIGR01838 254 VVEAI-----T---GEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDF 304 (532)
T ss_pred HHHHh-----c---CCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCC
Confidence 65543 2 23789999999999985 2345555 8899999988888643
No 79
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=98.84 E-value=6.6e-08 Score=85.97 Aligned_cols=113 Identities=19% Similarity=0.185 Sum_probs=67.5
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHH-------hcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAK-------RFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFV 141 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~-------~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~ 141 (337)
|.||||+||..|+...+.. +.....+ ....+++.+|......... ..+..+..+-+.
T Consensus 4 g~pVlFIhG~~Gs~~q~rs---l~~~~~~~~~~~~~~~~~d~ft~df~~~~s~~~-------------g~~l~~q~~~~~ 67 (225)
T PF07819_consen 4 GIPVLFIHGNAGSYKQVRS---LASELQRKALLNDNSSHFDFFTVDFNEELSAFH-------------GRTLQRQAEFLA 67 (225)
T ss_pred CCEEEEECcCCCCHhHHHH---HHHHHhhhhhhccCccceeEEEeccCccccccc-------------cccHHHHHHHHH
Confidence 7899999999988554432 1222211 1234677777654321111 111333334444
Q ss_pred HHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCC---CceeEeeecCcccccc
Q psy1220 142 DVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYP---HIVQGALASSAPMFQT 200 (337)
Q Consensus 142 ~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P---~~v~~~v~~sap~~~~ 200 (337)
+.++.+.+... ....+..+++++||||||.+|..+....+ +.|+++|..++|....
T Consensus 68 ~~i~~i~~~~~---~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~tPh~g~ 126 (225)
T PF07819_consen 68 EAIKYILELYK---SNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGTPHRGS 126 (225)
T ss_pred HHHHHHHHhhh---hccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcCCCCCc
Confidence 44444443200 01234579999999999999998886654 5799999888888654
No 80
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=98.79 E-value=8.6e-08 Score=87.74 Aligned_cols=127 Identities=23% Similarity=0.195 Sum_probs=85.4
Q ss_pred CCeEeeEEEEeCcccCCCCCCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccc
Q psy1220 50 NQTFPLKYLINDEFWDEDGGAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSG 129 (337)
Q Consensus 50 ~~tf~qry~~~~~~~~~~~~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~ 129 (337)
++.|..-.|+.+..... .+.||++||-+|+...-.. .+++..+. +.|+.||+++.||||++......-+
T Consensus 58 dg~~~~ldw~~~p~~~~--~P~vVl~HGL~G~s~s~y~-r~L~~~~~-~rg~~~Vv~~~Rgcs~~~n~~p~~y------- 126 (345)
T COG0429 58 DGGFIDLDWSEDPRAAK--KPLVVLFHGLEGSSNSPYA-RGLMRALS-RRGWLVVVFHFRGCSGEANTSPRLY------- 126 (345)
T ss_pred CCCEEEEeeccCccccC--CceEEEEeccCCCCcCHHH-HHHHHHHH-hcCCeEEEEecccccCCcccCccee-------
Confidence 33455556655432221 3358999999998665432 34344444 4589999999999999864322111
Q ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhH-HHHHHHHHhCCC-ceeEeeecCcccc
Q psy1220 130 YLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGG-MLAFWLRLKYPH-IVQGALASSAPMF 198 (337)
Q Consensus 130 ~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG-~la~~~~~~~P~-~v~~~v~~sap~~ 198 (337)
+. -..+|++.++++++.. . ...|+..+|.|+|| ++|.++..+--+ .+.++++.|+|..
T Consensus 127 --h~-G~t~D~~~~l~~l~~~-----~---~~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~D 186 (345)
T COG0429 127 --HS-GETEDIRFFLDWLKAR-----F---PPRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFD 186 (345)
T ss_pred --cc-cchhHHHHHHHHHHHh-----C---CCCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHH
Confidence 11 1239999999999865 3 44799999999999 888888766433 3678888888864
No 81
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=98.75 E-value=3.4e-08 Score=87.48 Aligned_cols=101 Identities=17% Similarity=0.249 Sum_probs=71.9
Q ss_pred CcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHh
Q psy1220 70 APVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLED 149 (337)
Q Consensus 70 ~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~ 149 (337)
+|||++|+++|+...|.. +...+... ...|+.++.+|.+...+ ..-+++++++++.+.|.....
T Consensus 1 ~~lf~~p~~gG~~~~y~~---la~~l~~~-~~~v~~i~~~~~~~~~~------------~~~si~~la~~y~~~I~~~~~ 64 (229)
T PF00975_consen 1 RPLFCFPPAGGSASSYRP---LARALPDD-VIGVYGIEYPGRGDDEP------------PPDSIEELASRYAEAIRARQP 64 (229)
T ss_dssp -EEEEESSTTCSGGGGHH---HHHHHTTT-EEEEEEECSTTSCTTSH------------EESSHHHHHHHHHHHHHHHTS
T ss_pred CeEEEEcCCccCHHHHHH---HHHhCCCC-eEEEEEEecCCCCCCCC------------CCCCHHHHHHHHHHHhhhhCC
Confidence 489999999998776644 23334333 24599999999984332 124588888888777766552
Q ss_pred hhhhhccCCCCCCCEEEEecchhHHHHHHHHHh---CCCceeEeeecCccc
Q psy1220 150 ASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLK---YPHIVQGALASSAPM 197 (337)
Q Consensus 150 ~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~---~P~~v~~~v~~sap~ 197 (337)
..|++++|||+||.||..+|.+ .-..+..++++.++.
T Consensus 65 -----------~gp~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~~~ 104 (229)
T PF00975_consen 65 -----------EGPYVLAGWSFGGILAFEMARQLEEAGEEVSRLILIDSPP 104 (229)
T ss_dssp -----------SSSEEEEEETHHHHHHHHHHHHHHHTT-SESEEEEESCSS
T ss_pred -----------CCCeeehccCccHHHHHHHHHHHHHhhhccCceEEecCCC
Confidence 2599999999999999999865 345588888777543
No 82
>PRK11460 putative hydrolase; Provisional
Probab=98.73 E-value=1.3e-07 Score=84.55 Aligned_cols=118 Identities=16% Similarity=0.119 Sum_probs=69.5
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCC-CCCCCCC---CcccccCCHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPF-GPKSLSS---PRLSGYLTVAQTLADFVDVI 144 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~-~~~s~~~---~~~~~~~t~~~~~~D~~~~i 144 (337)
...||++||.+++...|.. +...+++.. ..+..+..+|+..+... ...++.. .+....-..+..++++.+++
T Consensus 16 ~~~vIlLHG~G~~~~~~~~---l~~~l~~~~-~~~~~i~~~g~~~~~~~~g~~W~~~~~~~~~~~~~~~~~~~~~l~~~i 91 (232)
T PRK11460 16 QQLLLLFHGVGDNPVAMGE---IGSWFAPAF-PDALVVSVGGPEPSGNGAGRQWFSVQGITEDNRQARVAAIMPTFIETV 91 (232)
T ss_pred CcEEEEEeCCCCChHHHHH---HHHHHHHHC-CCCEEECCCCCCCcCCCCCcccccCCCCCccchHHHHHHHHHHHHHHH
Confidence 4569999999988776654 344455542 23444555555432211 0101100 00000112334445555666
Q ss_pred HHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcc
Q psy1220 145 QSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAP 196 (337)
Q Consensus 145 ~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap 196 (337)
+.+..+ . ..+..+++++|+|+||.+|+.++.++|+.+.++++.++.
T Consensus 92 ~~~~~~-----~-~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~ 137 (232)
T PRK11460 92 RYWQQQ-----S-GVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGR 137 (232)
T ss_pred HHHHHh-----c-CCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccc
Confidence 665544 2 334468999999999999999999999988888866654
No 83
>PRK07868 acyl-CoA synthetase; Validated
Probab=98.73 E-value=9.2e-08 Score=102.56 Aligned_cols=109 Identities=15% Similarity=0.180 Sum_probs=77.2
Q ss_pred CCcEEEEeCCCCCccchhhh--hHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAEN--LGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQS 146 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~--~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~ 146 (337)
+.||||+||...+...|... .+++..|+++ |++|+++| +|.|.+... ....+..+.+.++.+.++.
T Consensus 67 ~~plllvhg~~~~~~~~d~~~~~s~v~~L~~~-g~~v~~~d---~G~~~~~~~--------~~~~~l~~~i~~l~~~l~~ 134 (994)
T PRK07868 67 GPPVLMVHPMMMSADMWDVTRDDGAVGILHRA-GLDPWVID---FGSPDKVEG--------GMERNLADHVVALSEAIDT 134 (994)
T ss_pred CCcEEEECCCCCCccceecCCcccHHHHHHHC-CCEEEEEc---CCCCChhHc--------CccCCHHHHHHHHHHHHHH
Confidence 67999999988887777542 2334555554 78999999 466654211 0124566677666666666
Q ss_pred HHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhC-CCceeEeeecCcccc
Q psy1220 147 LEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKY-PHIVQGALASSAPMF 198 (337)
Q Consensus 147 l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~-P~~v~~~v~~sap~~ 198 (337)
++.. ...+++++||||||++++.++..+ |++|+++++.++|+.
T Consensus 135 v~~~---------~~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d 178 (994)
T PRK07868 135 VKDV---------TGRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVD 178 (994)
T ss_pred HHHh---------hCCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccc
Confidence 5532 125899999999999999888654 568999998888864
No 84
>PRK10162 acetyl esterase; Provisional
Probab=98.69 E-value=1.9e-07 Score=87.41 Aligned_cols=109 Identities=17% Similarity=0.101 Sum_probs=70.5
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
...||++|||+...........+...++++.|+.|+.+|.|.-.+.. ....++|+.+.++++.
T Consensus 81 ~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~~-----------------~p~~~~D~~~a~~~l~ 143 (318)
T PRK10162 81 QATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEAR-----------------FPQAIEEIVAVCCYFH 143 (318)
T ss_pred CCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCCC-----------------CCCcHHHHHHHHHHHH
Confidence 34588999998433222111224667888889999999998643221 1125667776666665
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhC------CCceeEeeecCccc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKY------PHIVQGALASSAPM 197 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~------P~~v~~~v~~sap~ 197 (337)
+... .+ +.+..+++++|+|+||.+|+.++.+. |..+.++++.++..
T Consensus 144 ~~~~--~~-~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~ 195 (318)
T PRK10162 144 QHAE--DY-GINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLY 195 (318)
T ss_pred HhHH--Hh-CCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCcc
Confidence 3200 01 22346899999999999999998764 35688888776543
No 85
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=98.64 E-value=1.9e-07 Score=68.96 Aligned_cols=64 Identities=20% Similarity=0.077 Sum_probs=42.9
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQ 145 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~ 145 (337)
++.|+++||.......+.. +...|+ +.|+.|+++||||||+|..... ..-+.++.++|+..+++
T Consensus 16 k~~v~i~HG~~eh~~ry~~---~a~~L~-~~G~~V~~~D~rGhG~S~g~rg---------~~~~~~~~v~D~~~~~~ 79 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAH---LAEFLA-EQGYAVFAYDHRGHGRSEGKRG---------HIDSFDDYVDDLHQFIQ 79 (79)
T ss_pred CEEEEEeCCcHHHHHHHHH---HHHHHH-hCCCEEEEECCCcCCCCCCccc---------ccCCHHHHHHHHHHHhC
Confidence 4578899994433332222 223333 4689999999999999985321 12348999999998864
No 86
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=98.63 E-value=7.6e-08 Score=98.02 Aligned_cols=111 Identities=20% Similarity=0.226 Sum_probs=73.9
Q ss_pred cEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccc---cccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHH
Q psy1220 71 PVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRY---YGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSL 147 (337)
Q Consensus 71 pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg---~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l 147 (337)
.||++|||+.....+.-. ..+..++ ..|+.|+.++.|| ||+.-...... .. -...++|+.+.++.+
T Consensus 396 ~i~~~hGGP~~~~~~~~~-~~~q~~~-~~G~~V~~~n~RGS~GyG~~F~~~~~~-----~~----g~~~~~D~~~~~~~l 464 (620)
T COG1506 396 LIVYIHGGPSAQVGYSFN-PEIQVLA-SAGYAVLAPNYRGSTGYGREFADAIRG-----DW----GGVDLEDLIAAVDAL 464 (620)
T ss_pred EEEEeCCCCccccccccc-hhhHHHh-cCCeEEEEeCCCCCCccHHHHHHhhhh-----cc----CCccHHHHHHHHHHH
Confidence 378899998665543221 1233344 4589999999994 55542211000 00 123567777777766
Q ss_pred HhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCccccc
Q psy1220 148 EDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQ 199 (337)
Q Consensus 148 ~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~~ 199 (337)
.+. +..+.+++.++||||||+++++.+.+.| .++++++..+++..
T Consensus 465 ~~~------~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~ 509 (620)
T COG1506 465 VKL------PLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDW 509 (620)
T ss_pred HhC------CCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchh
Confidence 543 4456679999999999999999999999 78888777665543
No 87
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=98.60 E-value=3.6e-07 Score=84.90 Aligned_cols=135 Identities=13% Similarity=0.067 Sum_probs=83.4
Q ss_pred CCcEEEEeCCCCCccchh----hhhHHHHHHHH------hcCCcEEEecccccc--cCCCCCCCCCCC--CcccccCCHH
Q psy1220 69 GAPVFFYCGNEDAIETFA----ENLGFLWESAK------RFSARVVLVEHRYYG--SSLPFGPKSLSS--PRLSGYLTVA 134 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~----~~~~~~~~la~------~~~~~vi~~D~rg~G--~S~~~~~~s~~~--~~~~~~~t~~ 134 (337)
...|+++||..|+..... ...|+|..+.- -.++-||+.+--|.+ .|.|.......+ ......+|++
T Consensus 51 ~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~ti~ 130 (368)
T COG2021 51 DNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVITIR 130 (368)
T ss_pred CceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCcccHH
Confidence 446889999888654332 11254555542 234679999999865 444432111000 0122346777
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCCCCEE-EEecchhHHHHHHHHHhCCCceeEeeecCccccccCCCCChhHHHHHH
Q psy1220 135 QTLADFVDVIQSLEDASRLRIGAAFKPHPVI-AFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTNDLAPCDIYYKEV 213 (337)
Q Consensus 135 ~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~i-l~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~~~~~~~~~~~~~~~v 213 (337)
+++.--..++++|+ + .++. ++|+|||||.|+.++..||++|+.++..++...... ....|.+..
T Consensus 131 D~V~aq~~ll~~LG-------I-----~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s~---~~ia~~~~~ 195 (368)
T COG2021 131 DMVRAQRLLLDALG-------I-----KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARLSA---QNIAFNEVQ 195 (368)
T ss_pred HHHHHHHHHHHhcC-------c-----ceEeeeeccChHHHHHHHHHHhChHHHhhhheecccccCCH---HHHHHHHHH
Confidence 77776677777777 3 4555 999999999999999999999999995554443332 233444444
Q ss_pred HHHHh
Q psy1220 214 TKIYR 218 (337)
Q Consensus 214 ~~~~~ 218 (337)
++++.
T Consensus 196 r~AI~ 200 (368)
T COG2021 196 RQAIE 200 (368)
T ss_pred HHHHH
Confidence 44433
No 88
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=98.57 E-value=1.4e-07 Score=82.55 Aligned_cols=106 Identities=20% Similarity=0.191 Sum_probs=73.1
Q ss_pred EEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhh
Q psy1220 72 VFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDAS 151 (337)
Q Consensus 72 ivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~ 151 (337)
||++|||+.....-.....+...++++.|+.|+.+|.|=..+. +..+.++|+.+.++++.++-
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~~-----------------~~p~~~~D~~~a~~~l~~~~ 63 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPEA-----------------PFPAALEDVKAAYRWLLKNA 63 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTTS-----------------STTHHHHHHHHHHHHHHHTH
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeeccccccc-----------------cccccccccccceeeecccc
Confidence 7899999976554444444567788878999999999954221 14568899999999887540
Q ss_pred hhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCc----eeEeeecCccc
Q psy1220 152 RLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHI----VQGALASSAPM 197 (337)
Q Consensus 152 ~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~----v~~~v~~sap~ 197 (337)
. .+ ..+.++++++|+|-||.+|+.++.+..+. ++++++.++..
T Consensus 64 ~--~~-~~d~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~ 110 (211)
T PF07859_consen 64 D--KL-GIDPERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWT 110 (211)
T ss_dssp H--HH-TEEEEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHS
T ss_pred c--cc-cccccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccc
Confidence 0 01 12347999999999999999998765543 88888888643
No 89
>KOG2984|consensus
Probab=98.55 E-value=4.8e-08 Score=83.07 Aligned_cols=106 Identities=20% Similarity=0.184 Sum_probs=75.4
Q ss_pred CCcEEEEeCCCCCcc-chhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIE-TFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSL 147 (337)
Q Consensus 69 ~~pivl~hGg~g~~~-~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l 147 (337)
...|+++-|.-|+.. .|.. .+..+-+.+...||++|-||||.|.|.. +.+..+-..+|....++-+
T Consensus 42 ~~~iLlipGalGs~~tDf~p---ql~~l~k~l~~TivawDPpGYG~SrPP~----------Rkf~~~ff~~Da~~avdLM 108 (277)
T KOG2984|consen 42 PNYILLIPGALGSYKTDFPP---QLLSLFKPLQVTIVAWDPPGYGTSRPPE----------RKFEVQFFMKDAEYAVDLM 108 (277)
T ss_pred CceeEecccccccccccCCH---HHHhcCCCCceEEEEECCCCCCCCCCCc----------ccchHHHHHHhHHHHHHHH
Confidence 345888888877653 3433 2455555556789999999999999853 2233555555555444444
Q ss_pred HhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcc
Q psy1220 148 EDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAP 196 (337)
Q Consensus 148 ~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap 196 (337)
+.-+ + .|+.++|+|=||..|+..|.|+|+.|..+++-.|.
T Consensus 109 ~aLk----~-----~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ 148 (277)
T KOG2984|consen 109 EALK----L-----EPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAA 148 (277)
T ss_pred HHhC----C-----CCeeEeeecCCCeEEEEeeccChhhhhhheeeccc
Confidence 3210 4 79999999999999999999999999999866544
No 90
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=98.49 E-value=1.9e-06 Score=79.36 Aligned_cols=98 Identities=21% Similarity=0.187 Sum_probs=76.1
Q ss_pred CCcEEEEeCCCCCccchhh---hhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAE---NLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQ 145 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~---~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~ 145 (337)
++-|++..|+++..+.... ....+.+++++.+++|+.+..||.|.|... .+.++.+.|..+.++
T Consensus 137 ~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGVg~S~G~-------------~s~~dLv~~~~a~v~ 203 (365)
T PF05677_consen 137 QRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPGVGSSTGP-------------PSRKDLVKDYQACVR 203 (365)
T ss_pred CcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCccccCCCC-------------CCHHHHHHHHHHHHH
Confidence 5678888888776544211 112377899999999999999999999753 346889999999999
Q ss_pred HHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCC
Q psy1220 146 SLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYP 184 (337)
Q Consensus 146 ~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P 184 (337)
.|.++ ..+.+...+++.|||+||.+++....+.+
T Consensus 204 yL~d~-----~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~~ 237 (365)
T PF05677_consen 204 YLRDE-----EQGPKAKNIILYGHSLGGGVQAEALKKEV 237 (365)
T ss_pred HHHhc-----ccCCChheEEEeeccccHHHHHHHHHhcc
Confidence 99864 22344578999999999999998766654
No 91
>KOG1838|consensus
Probab=98.48 E-value=2.4e-06 Score=80.91 Aligned_cols=109 Identities=24% Similarity=0.186 Sum_probs=77.9
Q ss_pred CcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHh
Q psy1220 70 APVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLED 149 (337)
Q Consensus 70 ~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~ 149 (337)
..||++||..|+...-.. .+ +...|.+.|++|+++.+||+|.|.-..+.-+ + --..+|+.++++++++
T Consensus 126 P~vvilpGltg~S~~~YV-r~-lv~~a~~~G~r~VVfN~RG~~g~~LtTpr~f---------~-ag~t~Dl~~~v~~i~~ 193 (409)
T KOG1838|consen 126 PIVVILPGLTGGSHESYV-RH-LVHEAQRKGYRVVVFNHRGLGGSKLTTPRLF---------T-AGWTEDLREVVNHIKK 193 (409)
T ss_pred cEEEEecCCCCCChhHHH-HH-HHHHHHhCCcEEEEECCCCCCCCccCCCcee---------e-cCCHHHHHHHHHHHHH
Confidence 347889998776543221 12 4445667799999999999999876433222 1 2256899999999997
Q ss_pred hhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCC--ceeEeeecCcccc
Q psy1220 150 ASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPH--IVQGALASSAPMF 198 (337)
Q Consensus 150 ~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~--~v~~~v~~sap~~ 198 (337)
+ + +..|...+|.||||++-..+..+--+ .+.++++.+.|..
T Consensus 194 ~-----~---P~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd 236 (409)
T KOG1838|consen 194 R-----Y---PQAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWD 236 (409)
T ss_pred h-----C---CCCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccch
Confidence 7 6 56799999999999999998765433 2566666666754
No 92
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.45 E-value=3.3e-06 Score=76.26 Aligned_cols=117 Identities=19% Similarity=0.177 Sum_probs=81.9
Q ss_pred CCc-EEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCC--CCCCCCcccccCCHHHHHHHHHHHHH
Q psy1220 69 GAP-VFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGP--KSLSSPRLSGYLTVAQTLADFVDVIQ 145 (337)
Q Consensus 69 ~~p-ivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~--~s~~~~~~~~~~t~~~~~~D~~~~i~ 145 (337)
++| ||.+||+.++......-+| |..+|++.|+.|+.+| |+.++.+... .++...+.. . =.+-+.++.+++.
T Consensus 60 ~apLvv~LHG~~~sgag~~~~sg-~d~lAd~~gFlV~yPd--g~~~~wn~~~~~~~~~p~~~~--~-g~ddVgflr~lva 133 (312)
T COG3509 60 GAPLVVVLHGSGGSGAGQLHGTG-WDALADREGFLVAYPD--GYDRAWNANGCGNWFGPADRR--R-GVDDVGFLRALVA 133 (312)
T ss_pred CCCEEEEEecCCCChHHhhcccc-hhhhhcccCcEEECcC--ccccccCCCcccccCCccccc--C-CccHHHHHHHHHH
Confidence 345 7889999999887766666 7889999999999995 3444432111 010000000 1 1224667778888
Q ss_pred HHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCccc
Q psy1220 146 SLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPM 197 (337)
Q Consensus 146 ~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~ 197 (337)
.+..+ + +.+..++++.|-|-||.++.+++..||+++.++-..++..
T Consensus 134 ~l~~~-----~-gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~ 179 (312)
T COG3509 134 KLVNE-----Y-GIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLL 179 (312)
T ss_pred HHHHh-----c-CcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeeccc
Confidence 88876 4 5566799999999999999999999999998877655554
No 93
>PRK10115 protease 2; Provisional
Probab=98.44 E-value=1.2e-06 Score=90.28 Aligned_cols=112 Identities=20% Similarity=0.169 Sum_probs=76.9
Q ss_pred Cc-EEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEeccccc---ccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHH
Q psy1220 70 AP-VFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYY---GSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQ 145 (337)
Q Consensus 70 ~p-ivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~---G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~ 145 (337)
.| ||+.|||.+......-+. .+..|+. .|+.|+.+..||- |+...... +...-....+|+.+.++
T Consensus 445 ~P~ll~~hGg~~~~~~p~f~~-~~~~l~~-rG~~v~~~n~RGs~g~G~~w~~~g---------~~~~k~~~~~D~~a~~~ 513 (686)
T PRK10115 445 NPLLVYGYGSYGASIDADFSF-SRLSLLD-RGFVYAIVHVRGGGELGQQWYEDG---------KFLKKKNTFNDYLDACD 513 (686)
T ss_pred CCEEEEEECCCCCCCCCCccH-HHHHHHH-CCcEEEEEEcCCCCccCHHHHHhh---------hhhcCCCcHHHHHHHHH
Confidence 35 677899988754322211 1334555 5999999999984 43322110 00111246788888888
Q ss_pred HHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcccc
Q psy1220 146 SLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMF 198 (337)
Q Consensus 146 ~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~ 198 (337)
+|..+ ...+..++.+.|+|+||+++.+.+.++|++++++|+..+.+.
T Consensus 514 ~Lv~~------g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D 560 (686)
T PRK10115 514 ALLKL------GYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVD 560 (686)
T ss_pred HHHHc------CCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCchh
Confidence 88765 233557999999999999999999999999999998775544
No 94
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=98.43 E-value=5.4e-07 Score=79.11 Aligned_cols=95 Identities=19% Similarity=0.077 Sum_probs=65.7
Q ss_pred HHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchh
Q psy1220 93 WESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYG 172 (337)
Q Consensus 93 ~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~G 172 (337)
..+..+.|+.|+.+|.||.+.....-.. ....-.-...++|+.+.++++.++ . ..+..++.++|||+|
T Consensus 7 ~~~la~~Gy~v~~~~~rGs~g~g~~~~~------~~~~~~~~~~~~D~~~~i~~l~~~-----~-~iD~~ri~i~G~S~G 74 (213)
T PF00326_consen 7 AQLLASQGYAVLVPNYRGSGGYGKDFHE------AGRGDWGQADVDDVVAAIEYLIKQ-----Y-YIDPDRIGIMGHSYG 74 (213)
T ss_dssp HHHHHTTT-EEEEEE-TTSSSSHHHHHH------TTTTGTTHHHHHHHHHHHHHHHHT-----T-SEEEEEEEEEEETHH
T ss_pred HHHHHhCCEEEEEEcCCCCCccchhHHH------hhhccccccchhhHHHHHHHHhcc-----c-cccceeEEEEccccc
Confidence 3444556999999999987632210000 001111346789999999999865 2 334579999999999
Q ss_pred HHHHHHHHHhCCCceeEeeecCccccc
Q psy1220 173 GMLAFWLRLKYPHIVQGALASSAPMFQ 199 (337)
Q Consensus 173 G~la~~~~~~~P~~v~~~v~~sap~~~ 199 (337)
|.++++++.++|+++++++..+++...
T Consensus 75 G~~a~~~~~~~~~~f~a~v~~~g~~d~ 101 (213)
T PF00326_consen 75 GYLALLAATQHPDRFKAAVAGAGVSDL 101 (213)
T ss_dssp HHHHHHHHHHTCCGSSEEEEESE-SST
T ss_pred ccccchhhcccceeeeeeeccceecch
Confidence 999999999999999999988765543
No 95
>KOG2565|consensus
Probab=98.42 E-value=6.5e-07 Score=82.74 Aligned_cols=106 Identities=18% Similarity=0.207 Sum_probs=79.8
Q ss_pred CcEEEEeCCCCCccchhhhhHHHHHHHH--------hcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHH
Q psy1220 70 APVFFYCGNEDAIETFAENLGFLWESAK--------RFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFV 141 (337)
Q Consensus 70 ~pivl~hGg~g~~~~~~~~~~~~~~la~--------~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~ 141 (337)
.|++++||.+|+...|.. ++--|.. ++-+.||++.+||||-|+.... +.++..+.+.=+.
T Consensus 153 ~PlLl~HGwPGsv~EFyk---fIPlLT~p~~hg~~~d~~FEVI~PSlPGygwSd~~sk---------~GFn~~a~Arvmr 220 (469)
T KOG2565|consen 153 KPLLLLHGWPGSVREFYK---FIPLLTDPKRHGNESDYAFEVIAPSLPGYGWSDAPSK---------TGFNAAATARVMR 220 (469)
T ss_pred cceEEecCCCchHHHHHh---hhhhhcCccccCCccceeEEEeccCCCCcccCcCCcc---------CCccHHHHHHHHH
Confidence 589999999999776665 3333332 1224899999999999986533 3355666655556
Q ss_pred HHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCccccc
Q psy1220 142 DVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQ 199 (337)
Q Consensus 142 ~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~~ 199 (337)
.++-.++ + .+..+-|+.||..|+..++..||+.|.|+-+.-.++.+
T Consensus 221 kLMlRLg-------~-----nkffiqGgDwGSiI~snlasLyPenV~GlHlnm~~~~s 266 (469)
T KOG2565|consen 221 KLMLRLG-------Y-----NKFFIQGGDWGSIIGSNLASLYPENVLGLHLNMCFVNS 266 (469)
T ss_pred HHHHHhC-------c-----ceeEeecCchHHHHHHHHHhhcchhhhHhhhcccccCC
Confidence 6665555 4 79999999999999999999999999999876655544
No 96
>KOG4667|consensus
Probab=98.37 E-value=1.9e-06 Score=74.20 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=73.7
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHH---HhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESA---KRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQ 145 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la---~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~ 145 (337)
...+|++||.-++...- .+..+| ++.|+.++.+|.+|-|.|... ..|-....-++|+..+++
T Consensus 33 ~e~vvlcHGfrS~Kn~~-----~~~~vA~~~e~~gis~fRfDF~GnGeS~gs----------f~~Gn~~~eadDL~sV~q 97 (269)
T KOG4667|consen 33 TEIVVLCHGFRSHKNAI-----IMKNVAKALEKEGISAFRFDFSGNGESEGS----------FYYGNYNTEADDLHSVIQ 97 (269)
T ss_pred ceEEEEeeccccccchH-----HHHHHHHHHHhcCceEEEEEecCCCCcCCc----------cccCcccchHHHHHHHHH
Confidence 56799999955543221 233333 456899999999999999852 222223345599999999
Q ss_pred HHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcc
Q psy1220 146 SLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAP 196 (337)
Q Consensus 146 ~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap 196 (337)
++... +..--+++|||-||.++..++.||++ +.-+|..++-
T Consensus 98 ~~s~~---------nr~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGR 138 (269)
T KOG4667|consen 98 YFSNS---------NRVVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGR 138 (269)
T ss_pred HhccC---------ceEEEEEEeecCccHHHHHHHHhhcC-chheEEcccc
Confidence 99853 11235689999999999999999998 7777766644
No 97
>KOG1553|consensus
Probab=98.36 E-value=4.1e-06 Score=76.78 Aligned_cols=76 Identities=22% Similarity=0.388 Sum_probs=53.7
Q ss_pred hcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHH-HHHHHhhhhhhccCCCCCCCEEEEecchhHHHH
Q psy1220 98 RFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDV-IQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLA 176 (337)
Q Consensus 98 ~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~-i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la 176 (337)
+.|+.|+.+.||||+.|...+-- .+...+++-+..| |+.+ +.+.+.+|++|+|.||.-+
T Consensus 266 ~lgYsvLGwNhPGFagSTG~P~p----------~n~~nA~DaVvQfAI~~L----------gf~~edIilygWSIGGF~~ 325 (517)
T KOG1553|consen 266 QLGYSVLGWNHPGFAGSTGLPYP----------VNTLNAADAVVQFAIQVL----------GFRQEDIILYGWSIGGFPV 325 (517)
T ss_pred HhCceeeccCCCCccccCCCCCc----------ccchHHHHHHHHHHHHHc----------CCCccceEEEEeecCCchH
Confidence 46899999999999999864310 0011222222222 2222 3355789999999999999
Q ss_pred HHHHHhCCCceeEeeecC
Q psy1220 177 FWLRLKYPHIVQGALASS 194 (337)
Q Consensus 177 ~~~~~~~P~~v~~~v~~s 194 (337)
+|.|..||+ |+++|+..
T Consensus 326 ~waAs~YPd-VkavvLDA 342 (517)
T KOG1553|consen 326 AWAASNYPD-VKAVVLDA 342 (517)
T ss_pred HHHhhcCCC-ceEEEeec
Confidence 999999998 88888765
No 98
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=98.36 E-value=4.5e-06 Score=81.99 Aligned_cols=86 Identities=16% Similarity=0.149 Sum_probs=62.3
Q ss_pred CcEEEecc-cccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHH
Q psy1220 101 ARVVLVEH-RYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWL 179 (337)
Q Consensus 101 ~~vi~~D~-rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~ 179 (337)
+.++.+|+ +|+|.|...... ...+.++.++|+.++++.+.++ ++...+.|++|+||||||..+..+
T Consensus 122 ~~~l~iDqP~G~G~S~~~~~~--------~~~~~~~~a~d~~~~l~~f~~~-----~p~~~~~~~~i~GeSygG~y~p~~ 188 (462)
T PTZ00472 122 AYVIYVDQPAGVGFSYADKAD--------YDHNESEVSEDMYNFLQAFFGS-----HEDLRANDLFVVGESYGGHYAPAT 188 (462)
T ss_pred cCeEEEeCCCCcCcccCCCCC--------CCCChHHHHHHHHHHHHHHHHh-----CccccCCCEEEEeecchhhhHHHH
Confidence 57999997 599998753211 1244688999999999988765 555566899999999999988777
Q ss_pred HHhC---C-------CceeEeeecCccccc
Q psy1220 180 RLKY---P-------HIVQGALASSAPMFQ 199 (337)
Q Consensus 180 ~~~~---P-------~~v~~~v~~sap~~~ 199 (337)
+.+- . =.++|+++..+-+..
T Consensus 189 a~~i~~~n~~~~~~~inLkGi~IGNg~~dp 218 (462)
T PTZ00472 189 AYRINMGNKKGDGLYINLAGLAVGNGLTDP 218 (462)
T ss_pred HHHHHhhccccCCceeeeEEEEEeccccCh
Confidence 7552 1 136788877765543
No 99
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=98.34 E-value=1.6e-06 Score=95.55 Aligned_cols=99 Identities=11% Similarity=0.044 Sum_probs=74.0
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
+.|++++||.+|+...|.. +...+.. ++.|+.+|.+|+|.+.+. ..+.++.++|+.+.++.+.
T Consensus 1068 ~~~l~~lh~~~g~~~~~~~---l~~~l~~--~~~v~~~~~~g~~~~~~~------------~~~l~~la~~~~~~i~~~~ 1130 (1296)
T PRK10252 1068 GPTLFCFHPASGFAWQFSV---LSRYLDP--QWSIYGIQSPRPDGPMQT------------ATSLDEVCEAHLATLLEQQ 1130 (1296)
T ss_pred CCCeEEecCCCCchHHHHH---HHHhcCC--CCcEEEEECCCCCCCCCC------------CCCHHHHHHHHHHHHHhhC
Confidence 5689999998887654432 1222322 468999999999876431 2458889999888887654
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHh---CCCceeEeeecCc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLK---YPHIVQGALASSA 195 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~---~P~~v~~~v~~sa 195 (337)
. ..|++++||||||.+|..++.+ .|+.+..+++..+
T Consensus 1131 ~-----------~~p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~ 1169 (1296)
T PRK10252 1131 P-----------HGPYHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDT 1169 (1296)
T ss_pred C-----------CCCEEEEEechhhHHHHHHHHHHHHcCCceeEEEEecC
Confidence 2 2589999999999999999986 6888998886654
No 100
>KOG2183|consensus
Probab=98.34 E-value=1.8e-07 Score=87.45 Aligned_cols=35 Identities=51% Similarity=1.026 Sum_probs=32.7
Q ss_pred HHHhhccchHHHHHHHhcCCCCCCCCCCCCCCCCC
Q psy1220 303 AIFKRYLSDMYTTMAMTNYPYPSNFLTPLPGNPVK 337 (337)
Q Consensus 303 g~~~~~~~d~y~~~a~~~~py~~~~~~~~~~~~~~ 337 (337)
..+.+|++.+|..++|+||||+++||+|||+||||
T Consensus 268 ~~l~d~l~ea~~ylAMVdYPy~t~Fl~pLPa~PV~ 302 (492)
T KOG2183|consen 268 GDLKDYLREAYEYLAMVDYPYPTSFLAPLPAWPVK 302 (492)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccccCcCCCCcHH
Confidence 46678999999999999999999999999999996
No 101
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.32 E-value=1e-06 Score=77.67 Aligned_cols=97 Identities=14% Similarity=0.181 Sum_probs=57.1
Q ss_pred cEEEEeCCCCCccchhhhhHHHHH-HHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHh
Q psy1220 71 PVFFYCGNEDAIETFAENLGFLWE-SAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLED 149 (337)
Q Consensus 71 pivl~hGg~g~~~~~~~~~~~~~~-la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~ 149 (337)
-+|.++-.+|+...|.. |.. +-. ...++.+++||.|.-...+- ..+++++++.++.-+..
T Consensus 9 ~L~cfP~AGGsa~~fr~----W~~~lp~--~iel~avqlPGR~~r~~ep~----------~~di~~Lad~la~el~~--- 69 (244)
T COG3208 9 RLFCFPHAGGSASLFRS----WSRRLPA--DIELLAVQLPGRGDRFGEPL----------LTDIESLADELANELLP--- 69 (244)
T ss_pred eEEEecCCCCCHHHHHH----HHhhCCc--hhheeeecCCCcccccCCcc----------cccHHHHHHHHHHHhcc---
Confidence 46777766666554432 222 222 24699999999987543210 11234444444333331
Q ss_pred hhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCC---ceeEeeecC
Q psy1220 150 ASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPH---IVQGALASS 194 (337)
Q Consensus 150 ~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~---~v~~~v~~s 194 (337)
...+.|+.++||||||++|-.+++++-. ...++.+++
T Consensus 70 --------~~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg 109 (244)
T COG3208 70 --------PLLDAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISG 109 (244)
T ss_pred --------ccCCCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEec
Confidence 1244799999999999999999877532 245566443
No 102
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=98.29 E-value=2.5e-06 Score=75.26 Aligned_cols=92 Identities=16% Similarity=0.091 Sum_probs=52.0
Q ss_pred CCcEEEEeCCCC-CccchhhhhHHHHHHHHhcCCc---EEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNED-AIETFAENLGFLWESAKRFSAR---VVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVI 144 (337)
Q Consensus 69 ~~pivl~hGg~g-~~~~~~~~~~~~~~la~~~~~~---vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i 144 (337)
+.||||+||..+ ....|.. +.+..++.|+. |++++.-....+.... ... ...+.++.+++||
T Consensus 1 ~~PVVlVHG~~~~~~~~w~~----~~~~l~~~GY~~~~vya~tyg~~~~~~~~~--------~~~--~~~~~~~~l~~fI 66 (219)
T PF01674_consen 1 NRPVVLVHGTGGNAYSNWST----LAPYLKAAGYCDSEVYALTYGSGNGSPSVQ--------NAH--MSCESAKQLRAFI 66 (219)
T ss_dssp S--EEEE--TTTTTCGGCCH----HHHHHHHTT--CCCEEEE--S-CCHHTHHH--------HHH--B-HHHHHHHHHHH
T ss_pred CCCEEEECCCCcchhhCHHH----HHHHHHHcCCCcceeEeccCCCCCCCCccc--------ccc--cchhhHHHHHHHH
Confidence 369999999988 4445543 44444556875 7888763322211100 000 1234558899999
Q ss_pred HHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhC
Q psy1220 145 QSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKY 183 (337)
Q Consensus 145 ~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~ 183 (337)
+.+... . . .|+-|+||||||+++.++....
T Consensus 67 ~~Vl~~------T--G-akVDIVgHS~G~~iaR~yi~~~ 96 (219)
T PF01674_consen 67 DAVLAY------T--G-AKVDIVGHSMGGTIARYYIKGG 96 (219)
T ss_dssp HHHHHH------H--T---EEEEEETCHHHHHHHHHHHC
T ss_pred HHHHHh------h--C-CEEEEEEcCCcCHHHHHHHHHc
Confidence 998864 1 2 4999999999999999998644
No 103
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=98.28 E-value=2.8e-06 Score=82.59 Aligned_cols=87 Identities=15% Similarity=0.127 Sum_probs=65.6
Q ss_pred HHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecch
Q psy1220 92 LWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSY 171 (337)
Q Consensus 92 ~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~ 171 (337)
+..|.+ .|+ +...|++|+|.+.... ...++.++++.++++.+.+. . +..|++++||||
T Consensus 114 i~~L~~-~GY-~~~~dL~g~gYDwR~~------------~~~~~~~~~Lk~lIe~~~~~-----~---g~~kV~LVGHSM 171 (440)
T PLN02733 114 IEQLIK-WGY-KEGKTLFGFGYDFRQS------------NRLPETMDGLKKKLETVYKA-----S---GGKKVNIISHSM 171 (440)
T ss_pred HHHHHH-cCC-ccCCCcccCCCCcccc------------ccHHHHHHHHHHHHHHHHHH-----c---CCCCEEEEEECH
Confidence 344444 454 5588999999986531 12467788999999988754 2 337999999999
Q ss_pred hHHHHHHHHHhCCCc----eeEeeecCcccccc
Q psy1220 172 GGMLAFWLRLKYPHI----VQGALASSAPMFQT 200 (337)
Q Consensus 172 GG~la~~~~~~~P~~----v~~~v~~sap~~~~ 200 (337)
||.++..++.++|+. |+.+|..++|....
T Consensus 172 GGlva~~fl~~~p~~~~k~I~~~I~la~P~~Gs 204 (440)
T PLN02733 172 GGLLVKCFMSLHSDVFEKYVNSWIAIAAPFQGA 204 (440)
T ss_pred hHHHHHHHHHHCCHhHHhHhccEEEECCCCCCC
Confidence 999999999999974 67888888886544
No 104
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=98.25 E-value=2e-06 Score=81.91 Aligned_cols=111 Identities=18% Similarity=0.186 Sum_probs=67.0
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
..|+|++.||..+...-. ...+.+.....|..++++|.||.|.|...+ .+. + .+.... .+++++.
T Consensus 189 p~P~VIv~gGlDs~qeD~--~~l~~~~l~~rGiA~LtvDmPG~G~s~~~~-l~~----D-----~~~l~~---aVLd~L~ 253 (411)
T PF06500_consen 189 PYPTVIVCGGLDSLQEDL--YRLFRDYLAPRGIAMLTVDMPGQGESPKWP-LTQ----D-----SSRLHQ---AVLDYLA 253 (411)
T ss_dssp -EEEEEEE--TTS-GGGG--HHHHHCCCHHCT-EEEEE--TTSGGGTTT--S-S----------CCHHHH---HHHHHHH
T ss_pred CCCEEEEeCCcchhHHHH--HHHHHHHHHhCCCEEEEEccCCCcccccCC-CCc----C-----HHHHHH---HHHHHHh
Confidence 568999999988743221 112334334569999999999999985321 110 0 112222 3455555
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcccccc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQT 200 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~~~ 200 (337)
.. +..+..++.++|.|+||++|..+|...+++++++|..++++...
T Consensus 254 ~~------p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~ 299 (411)
T PF06500_consen 254 SR------PWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHF 299 (411)
T ss_dssp HS------TTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SCG
T ss_pred cC------CccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhhh
Confidence 32 33344799999999999999999999999999999999887654
No 105
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.19 E-value=9.4e-06 Score=73.22 Aligned_cols=101 Identities=18% Similarity=0.196 Sum_probs=73.0
Q ss_pred CcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHh
Q psy1220 70 APVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLED 149 (337)
Q Consensus 70 ~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~ 149 (337)
.|+|++|+..|....|.. +...+... ..|+.++-||+|.-... .-+.+++++.+.+-|..+.
T Consensus 1 ~pLF~fhp~~G~~~~~~~---L~~~l~~~--~~v~~l~a~g~~~~~~~------------~~~l~~~a~~yv~~Ir~~Q- 62 (257)
T COG3319 1 PPLFCFHPAGGSVLAYAP---LAAALGPL--LPVYGLQAPGYGAGEQP------------FASLDDMAAAYVAAIRRVQ- 62 (257)
T ss_pred CCEEEEcCCCCcHHHHHH---HHHHhccC--ceeeccccCcccccccc------------cCCHHHHHHHHHHHHHHhC-
Confidence 489999999888665543 22333333 46999999999852221 1347888888887777666
Q ss_pred hhhhhccCCCCCCCEEEEecchhHHHHHHHHHh---CCCceeEeeecCcccc
Q psy1220 150 ASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLK---YPHIVQGALASSAPMF 198 (337)
Q Consensus 150 ~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~---~P~~v~~~v~~sap~~ 198 (337)
+..|++|+|+|+||.+|..+|.+ --+.|..+++..++..
T Consensus 63 ----------P~GPy~L~G~S~GG~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 63 ----------PEGPYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred ----------CCCCEEEEeeccccHHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 33799999999999999999865 4567888887776654
No 106
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=98.19 E-value=4.4e-06 Score=76.42 Aligned_cols=85 Identities=19% Similarity=0.076 Sum_probs=62.7
Q ss_pred HHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHH
Q psy1220 96 AKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGML 175 (337)
Q Consensus 96 a~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~l 175 (337)
..+.||.||..|.||.|.|...-. .. ..+-.+|..+.|+++..+ +.. +.+|-++|.||+|+.
T Consensus 53 ~~~~GY~vV~~D~RG~g~S~G~~~----------~~-~~~e~~D~~d~I~W~~~Q------pws-~G~VGm~G~SY~G~~ 114 (272)
T PF02129_consen 53 FAERGYAVVVQDVRGTGGSEGEFD----------PM-SPNEAQDGYDTIEWIAAQ------PWS-NGKVGMYGISYGGFT 114 (272)
T ss_dssp HHHTT-EEEEEE-TTSTTS-S-B-----------TT-SHHHHHHHHHHHHHHHHC------TTE-EEEEEEEEETHHHHH
T ss_pred HHhCCCEEEEECCcccccCCCccc----------cC-ChhHHHHHHHHHHHHHhC------CCC-CCeEEeeccCHHHHH
Confidence 345599999999999999986321 11 466789999999999875 222 258999999999999
Q ss_pred HHHHHHhCCCceeEeeecCcccc
Q psy1220 176 AFWLRLKYPHIVQGALASSAPMF 198 (337)
Q Consensus 176 a~~~~~~~P~~v~~~v~~sap~~ 198 (337)
+...|...|..+++++..++...
T Consensus 115 q~~~A~~~~p~LkAi~p~~~~~d 137 (272)
T PF02129_consen 115 QWAAAARRPPHLKAIVPQSGWSD 137 (272)
T ss_dssp HHHHHTTT-TTEEEEEEESE-SB
T ss_pred HHHHHhcCCCCceEEEecccCCc
Confidence 99999988888999997665543
No 107
>KOG3724|consensus
Probab=98.17 E-value=3.6e-05 Score=77.40 Aligned_cols=41 Identities=29% Similarity=0.345 Sum_probs=29.8
Q ss_pred CCCEEEEecchhHHHHHHHHH---hCCCceeEeeecCccccccC
Q psy1220 161 PHPVIAFGGSYGGMLAFWLRL---KYPHIVQGALASSAPMFQTN 201 (337)
Q Consensus 161 ~~~~il~G~S~GG~la~~~~~---~~P~~v~~~v~~sap~~~~~ 201 (337)
...++++||||||++|..... .+++.|.-++-.++|..+.+
T Consensus 181 P~sVILVGHSMGGiVAra~~tlkn~~~~sVntIITlssPH~a~P 224 (973)
T KOG3724|consen 181 PHSVILVGHSMGGIVARATLTLKNEVQGSVNTIITLSSPHAAPP 224 (973)
T ss_pred CceEEEEeccchhHHHHHHHhhhhhccchhhhhhhhcCcccCCC
Confidence 356999999999999977653 24556666666677876554
No 108
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=98.16 E-value=1e-05 Score=73.44 Aligned_cols=109 Identities=17% Similarity=0.153 Sum_probs=68.7
Q ss_pred CcEEEEeCCCCCccc-hhh--hhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHH
Q psy1220 70 APVFFYCGNEDAIET-FAE--NLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQS 146 (337)
Q Consensus 70 ~pivl~hGg~g~~~~-~~~--~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~ 146 (337)
.+|+=+|--+-+..+ |.. +..-+.++.+. +.|+=+|.||+..-.+.- ++...+.|.++.++++.+++++
T Consensus 24 p~ilT~HDvGlNh~scF~~ff~~~~m~~i~~~--f~i~Hi~aPGqe~ga~~~------p~~y~yPsmd~LAe~l~~Vl~~ 95 (283)
T PF03096_consen 24 PAILTYHDVGLNHKSCFQGFFNFEDMQEILQN--FCIYHIDAPGQEEGAATL------PEGYQYPSMDQLAEMLPEVLDH 95 (283)
T ss_dssp -EEEEE--TT--HHHHCHHHHCSHHHHHHHTT--SEEEEEE-TTTSTT-----------TT-----HHHHHCTHHHHHHH
T ss_pred ceEEEeccccccchHHHHHHhcchhHHHHhhc--eEEEEEeCCCCCCCcccc------cccccccCHHHHHHHHHHHHHh
Confidence 446678886655433 211 11224555544 569999999997643321 2355789999999999999999
Q ss_pred HHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcccc
Q psy1220 147 LEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMF 198 (337)
Q Consensus 147 l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~ 198 (337)
++ + +.+|-+|-.-|++|-+.||.+||++|.|+|+.+....
T Consensus 96 f~-------l-----k~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~ 135 (283)
T PF03096_consen 96 FG-------L-----KSVIGFGVGAGANILARFALKHPERVLGLILVNPTCT 135 (283)
T ss_dssp HT---------------EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S
T ss_pred CC-------c-----cEEEEEeeccchhhhhhccccCccceeEEEEEecCCC
Confidence 99 5 6899999999999999999999999999998884443
No 109
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=98.11 E-value=4.7e-05 Score=70.91 Aligned_cols=145 Identities=17% Similarity=0.189 Sum_probs=94.3
Q ss_pred CCceeeeEEeecCCC----CCCCCCeEeeEEEEeCcccCCCCCCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEe
Q psy1220 31 YTYETKFFDAKLDHF----TYVSNQTFPLKYLINDEFWDEDGGAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLV 106 (337)
Q Consensus 31 ~~~~~~~f~q~~dhf----~~~~~~tf~qry~~~~~~~~~~~~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~ 106 (337)
..+.++.|..|+++. -|...++-.-++..... |... .+||.+...|.|+..-|.....+...|+++ |..-+.+
T Consensus 51 ~~~~eG~F~SP~~~~~~~~lP~es~~a~~~~~~P~~-~~~~-~rp~~IhLagTGDh~f~rR~~l~a~pLl~~-gi~s~~l 127 (348)
T PF09752_consen 51 CKIREGEFRSPLAFYLPGLLPEESRTARFQLLLPKR-WDSP-YRPVCIHLAGTGDHGFWRRRRLMARPLLKE-GIASLIL 127 (348)
T ss_pred eEEEEeEeCCchhhhccccCChhHhheEEEEEECCc-cccC-CCceEEEecCCCccchhhhhhhhhhHHHHc-CcceEEE
Confidence 456788899996553 23334443334444433 3323 567665555566654444332235568887 9999999
Q ss_pred cccccccCCCCCCCCCCCCccccc-----CCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHH
Q psy1220 107 EHRYYGSSLPFGPKSLSSPRLSGY-----LTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRL 181 (337)
Q Consensus 107 D~rg~G~S~~~~~~s~~~~~~~~~-----~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~ 181 (337)
+.|+||.-.|...... .+.. .--.+.+.+...+++++.+++ + .++.+.|-||||.+|...+.
T Consensus 128 e~Pyyg~RkP~~Q~~s----~l~~VsDl~~~g~~~i~E~~~Ll~Wl~~~G----~-----~~~g~~G~SmGG~~A~laa~ 194 (348)
T PF09752_consen 128 ENPYYGQRKPKDQRRS----SLRNVSDLFVMGRATILESRALLHWLEREG----Y-----GPLGLTGISMGGHMAALAAS 194 (348)
T ss_pred ecccccccChhHhhcc----cccchhHHHHHHhHHHHHHHHHHHHHHhcC----C-----CceEEEEechhHhhHHhhhh
Confidence 9999999887432211 1111 111456778888888888652 2 79999999999999999999
Q ss_pred hCCCceeEee
Q psy1220 182 KYPHIVQGAL 191 (337)
Q Consensus 182 ~~P~~v~~~v 191 (337)
.+|..+..+-
T Consensus 195 ~~p~pv~~vp 204 (348)
T PF09752_consen 195 NWPRPVALVP 204 (348)
T ss_pred cCCCceeEEE
Confidence 9999765443
No 110
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=98.11 E-value=4.2e-05 Score=68.69 Aligned_cols=34 Identities=29% Similarity=0.442 Sum_probs=31.6
Q ss_pred EEEEecchhHHHHHHHHHhCCCceeEeeecCccc
Q psy1220 164 VIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPM 197 (337)
Q Consensus 164 ~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~ 197 (337)
+.+.|+||||..|+.++.+||+.+.++++.|+.+
T Consensus 117 ~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~ 150 (251)
T PF00756_consen 117 RAIAGHSMGGYGALYLALRHPDLFGAVIAFSGAL 150 (251)
T ss_dssp EEEEEETHHHHHHHHHHHHSTTTESEEEEESEES
T ss_pred eEEeccCCCcHHHHHHHHhCccccccccccCccc
Confidence 9999999999999999999999999999888543
No 111
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.10 E-value=3.2e-05 Score=76.54 Aligned_cols=110 Identities=10% Similarity=0.091 Sum_probs=81.2
Q ss_pred CCcEEEEeCCCCCccch--hhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETF--AENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQS 146 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~--~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~ 146 (337)
+.|||+++..--...-+ .+..+++..+. +.|+.|+++|.|.-|.+. +.++.+++++.+.+.++.
T Consensus 215 ~~PLLIVPp~INK~YIlDL~P~~SlVr~lv-~qG~~VflIsW~nP~~~~-------------r~~~ldDYv~~i~~Ald~ 280 (560)
T TIGR01839 215 ARPLLVVPPQINKFYIFDLSPEKSFVQYCL-KNQLQVFIISWRNPDKAH-------------REWGLSTYVDALKEAVDA 280 (560)
T ss_pred CCcEEEechhhhhhheeecCCcchHHHHHH-HcCCeEEEEeCCCCChhh-------------cCCCHHHHHHHHHHHHHH
Confidence 57999999844322111 12234444444 459999999999965543 457789999888888888
Q ss_pred HHhhhhhhccCCCCCCCEEEEecchhHHHHHH----HHHhCCC-ceeEeeecCcccccc
Q psy1220 147 LEDASRLRIGAAFKPHPVIAFGGSYGGMLAFW----LRLKYPH-IVQGALASSAPMFQT 200 (337)
Q Consensus 147 l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~----~~~~~P~-~v~~~v~~sap~~~~ 200 (337)
+.+. - ...++.++|+|+||.+++. ++.++|+ .|+++++..+|+...
T Consensus 281 V~~~-----t---G~~~vnl~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatplDf~ 331 (560)
T TIGR01839 281 VRAI-----T---GSRDLNLLGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSLLDST 331 (560)
T ss_pred HHHh-----c---CCCCeeEEEECcchHHHHHHHHHHHhcCCCCceeeEEeeecccccC
Confidence 8754 1 3368999999999999997 8899996 799999888888643
No 112
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=98.07 E-value=2.6e-05 Score=67.26 Aligned_cols=85 Identities=16% Similarity=0.302 Sum_probs=55.8
Q ss_pred EEEEeCCCCCccchhhhhHHHHHHHHhcC--CcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHh
Q psy1220 72 VFFYCGNEDAIETFAENLGFLWESAKRFS--ARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLED 149 (337)
Q Consensus 72 ivl~hGg~g~~~~~~~~~~~~~~la~~~~--~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~ 149 (337)
|+++||..++..+.... .+.+..++.+ ..++.+|++.+ .+++++.+..+++....
T Consensus 2 ilYlHGF~Ssp~S~Ka~--~l~~~~~~~~~~~~~~~p~l~~~---------------------p~~a~~~l~~~i~~~~~ 58 (187)
T PF05728_consen 2 ILYLHGFNSSPQSFKAQ--ALKQYFAEHGPDIQYPCPDLPPF---------------------PEEAIAQLEQLIEELKP 58 (187)
T ss_pred eEEecCCCCCCCCHHHH--HHHHHHHHhCCCceEECCCCCcC---------------------HHHHHHHHHHHHHhCCC
Confidence 78999988876655431 3455444433 23455544321 46677777777666552
Q ss_pred hhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecC
Q psy1220 150 ASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASS 194 (337)
Q Consensus 150 ~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~s 194 (337)
..+.|+|.||||+.|.+++.+|+- .+ |+..
T Consensus 59 ------------~~~~liGSSlGG~~A~~La~~~~~--~a-vLiN 88 (187)
T PF05728_consen 59 ------------ENVVLIGSSLGGFYATYLAERYGL--PA-VLIN 88 (187)
T ss_pred ------------CCeEEEEEChHHHHHHHHHHHhCC--CE-EEEc
Confidence 349999999999999999999973 34 4444
No 113
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=98.04 E-value=2.7e-05 Score=70.38 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=72.0
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCC----cEEEeccccc----ccCCCCCCC-----CCCCCcccccCCHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSA----RVVLVEHRYY----GSSLPFGPK-----SLSSPRLSGYLTVAQ 135 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~----~vi~~D~rg~----G~S~~~~~~-----s~~~~~~~~~~t~~~ 135 (337)
..|.||+||..|+...+.. ++..+..+.+. .++-++--|. |+=...... .++ +-+.-+..+
T Consensus 11 ~tPTifihG~~gt~~s~~~---mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~---~n~~~~~~~ 84 (255)
T PF06028_consen 11 TTPTIFIHGYGGTANSFNH---MINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFE---DNRNANYKK 84 (255)
T ss_dssp -EEEEEE--TTGGCCCCHH---HHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEES---STT-CHHHH
T ss_pred CCcEEEECCCCCChhHHHH---HHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEec---CCCcCCHHH
Confidence 5799999999988766644 45555423343 3333333332 221110000 000 111135778
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCC-----ceeEeeecCccccccC
Q psy1220 136 TLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPH-----IVQGALASSAPMFQTN 201 (337)
Q Consensus 136 ~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~-----~v~~~v~~sap~~~~~ 201 (337)
..+.+..++..|+++ + ...++.+|||||||+.+..++.+|-. .+..+|...+|.....
T Consensus 85 qa~wl~~vl~~L~~~-----Y---~~~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~ 147 (255)
T PF06028_consen 85 QAKWLKKVLKYLKKK-----Y---HFKKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGIL 147 (255)
T ss_dssp HHHHHHHHHHHHHHC-----C-----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTT
T ss_pred HHHHHHHHHHHHHHh-----c---CCCEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccc
Confidence 888999999999987 3 34799999999999999999988643 4899999998987654
No 114
>KOG2931|consensus
Probab=98.02 E-value=0.00034 Score=63.24 Aligned_cols=109 Identities=17% Similarity=0.130 Sum_probs=80.4
Q ss_pred CcEEEEeCCCCCccc-hhh--hhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHH
Q psy1220 70 APVFFYCGNEDAIET-FAE--NLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQS 146 (337)
Q Consensus 70 ~pivl~hGg~g~~~~-~~~--~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~ 146 (337)
+.|+=+|.-+-+... |.. +.--+.++.+. +.|+-+|-||+-.--|.- +++..+-|.++..+++..++++
T Consensus 47 paiiTyhDlglN~~scFq~ff~~p~m~ei~~~--fcv~HV~~PGqe~gAp~~------p~~y~yPsmd~LAd~l~~VL~~ 118 (326)
T KOG2931|consen 47 PAIITYHDLGLNHKSCFQGFFNFPDMAEILEH--FCVYHVDAPGQEDGAPSF------PEGYPYPSMDDLADMLPEVLDH 118 (326)
T ss_pred ceEEEecccccchHhHhHHhhcCHhHHHHHhh--eEEEecCCCccccCCccC------CCCCCCCCHHHHHHHHHHHHHh
Confidence 346778886665432 221 11114445444 679999999985543321 2355688999999999999999
Q ss_pred HHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcccc
Q psy1220 147 LEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMF 198 (337)
Q Consensus 147 l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~ 198 (337)
++ + +.+|-+|---|++|-+.||.+||++|.|+|+.+.--.
T Consensus 119 f~-------l-----k~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~ 158 (326)
T KOG2931|consen 119 FG-------L-----KSVIGMGVGAGAYILARFALNHPERVLGLVLINCDPC 158 (326)
T ss_pred cC-------c-----ceEEEecccccHHHHHHHHhcChhheeEEEEEecCCC
Confidence 98 6 7899999999999999999999999999998874433
No 115
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=98.00 E-value=7.2e-05 Score=69.72 Aligned_cols=106 Identities=21% Similarity=0.210 Sum_probs=72.3
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
.+.||++|||+.....-..+......++...|+.|+.+|.|---+- + ....++|+.+.++++.
T Consensus 79 ~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~-~----------------~p~~~~d~~~a~~~l~ 141 (312)
T COG0657 79 APVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEH-P----------------FPAALEDAYAAYRWLR 141 (312)
T ss_pred CcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCC-C----------------CCchHHHHHHHHHHHH
Confidence 3557889999876554444445677788889999999999975332 1 2236677766666666
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCC----ceeEeeecC
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPH----IVQGALASS 194 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~----~v~~~v~~s 194 (337)
++.. .+ +.+.+++.++|+|-||.+|+.++..-.+ ...+.++.+
T Consensus 142 ~~~~--~~-g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~ 188 (312)
T COG0657 142 ANAA--EL-GIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLIS 188 (312)
T ss_pred hhhH--hh-CCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEe
Confidence 4300 01 3345799999999999999999876543 345556555
No 116
>COG4099 Predicted peptidase [General function prediction only]
Probab=98.00 E-value=2e-05 Score=71.15 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=34.5
Q ss_pred CCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCc
Q psy1220 158 AFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSA 195 (337)
Q Consensus 158 ~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sa 195 (337)
+.+..++.++|.|+||+-+..++.+||+.+.+++..++
T Consensus 265 nID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG 302 (387)
T COG4099 265 NIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAG 302 (387)
T ss_pred CcccceEEEEeecCcchhhHHHHHhCchhhheeeeecC
Confidence 55778999999999999999999999999999997664
No 117
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=97.98 E-value=3.4e-05 Score=67.98 Aligned_cols=60 Identities=22% Similarity=0.358 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCccccc
Q psy1220 133 VAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQ 199 (337)
Q Consensus 133 ~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~~ 199 (337)
+++.++-+.++|+...+. ..+..++++.|.|.||++|+.++.++|+.+.++++.|+.+..
T Consensus 83 i~~s~~~l~~li~~~~~~-------~i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~ 142 (216)
T PF02230_consen 83 IEESAERLDELIDEEVAY-------GIDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPP 142 (216)
T ss_dssp HHHHHHHHHHHHHHHHHT-------T--GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TT
T ss_pred HHHHHHHHHHHHHHHHHc-------CCChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeeccccc
Confidence 445555566666655432 234479999999999999999999999999999987766543
No 118
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=97.96 E-value=6e-05 Score=70.57 Aligned_cols=112 Identities=21% Similarity=0.113 Sum_probs=66.3
Q ss_pred cEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCC-C--------CCCCcc-cccCCHHHHHHHH
Q psy1220 71 PVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPK-S--------LSSPRL-SGYLTVAQTLADF 140 (337)
Q Consensus 71 pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~-s--------~~~~~~-~~~~t~~~~~~D~ 140 (337)
.||.+||.++....+.. ...++ ..|+.|+.+|-||.|...+.... . ..-.++ .+.+-....+.|+
T Consensus 85 avv~~hGyg~~~~~~~~----~~~~a-~~G~~vl~~d~rGqg~~~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~ 159 (320)
T PF05448_consen 85 AVVQFHGYGGRSGDPFD----LLPWA-AAGYAVLAMDVRGQGGRSPDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDA 159 (320)
T ss_dssp EEEEE--TT--GGGHHH----HHHHH-HTT-EEEEE--TTTSSSS-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHH
T ss_pred EEEEecCCCCCCCCccc----ccccc-cCCeEEEEecCCCCCCCCCCccccCCCCCccHHhcCccCchHHHHHHHHHHHH
Confidence 36788997766433322 12344 45899999999999932211000 0 000011 2334456678899
Q ss_pred HHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecC
Q psy1220 141 VDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASS 194 (337)
Q Consensus 141 ~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~s 194 (337)
...++.+... +..+..++.+.|+|.||.+++..+...|. |+++++..
T Consensus 160 ~ravd~l~sl------pevD~~rI~v~G~SqGG~lal~~aaLd~r-v~~~~~~v 206 (320)
T PF05448_consen 160 VRAVDFLRSL------PEVDGKRIGVTGGSQGGGLALAAAALDPR-VKAAAADV 206 (320)
T ss_dssp HHHHHHHHTS------TTEEEEEEEEEEETHHHHHHHHHHHHSST--SEEEEES
T ss_pred HHHHHHHHhC------CCcCcceEEEEeecCchHHHHHHHHhCcc-ccEEEecC
Confidence 9999988853 44455799999999999999999999875 77777654
No 119
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=97.95 E-value=5.1e-05 Score=64.48 Aligned_cols=107 Identities=17% Similarity=0.146 Sum_probs=72.9
Q ss_pred CCcE-EEEeCCCCCccchhhhhHHHHHHH---HhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHH
Q psy1220 69 GAPV-FFYCGNEDAIETFAENLGFLWESA---KRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVI 144 (337)
Q Consensus 69 ~~pi-vl~hGg~g~~~~~~~~~~~~~~la---~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i 144 (337)
..|| +++|-.+--..+- .| ..+..++ .+.|+.++.++.||.|+|...-+...- -++|..+.+
T Consensus 27 ~~~iAli~HPHPl~gGtm-~n-kvv~~la~~l~~~G~atlRfNfRgVG~S~G~fD~GiG------------E~~Da~aal 92 (210)
T COG2945 27 AAPIALICHPHPLFGGTM-NN-KVVQTLARALVKRGFATLRFNFRGVGRSQGEFDNGIG------------ELEDAAAAL 92 (210)
T ss_pred CCceEEecCCCccccCcc-CC-HHHHHHHHHHHhCCceEEeecccccccccCcccCCcc------------hHHHHHHHH
Confidence 4555 5667654322222 12 2334443 467999999999999999864333211 368999999
Q ss_pred HHHHhhhhhhccCCCCCCC-EEEEecchhHHHHHHHHHhCCCceeEeeecCcccc
Q psy1220 145 QSLEDASRLRIGAAFKPHP-VIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMF 198 (337)
Q Consensus 145 ~~l~~~~~~~~~~~~~~~~-~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~ 198 (337)
++++.+ . +..+ +.+.|.|+|++|++.++++.|+ ....+..++|+.
T Consensus 93 dW~~~~-----h---p~s~~~~l~GfSFGa~Ia~~la~r~~e-~~~~is~~p~~~ 138 (210)
T COG2945 93 DWLQAR-----H---PDSASCWLAGFSFGAYIAMQLAMRRPE-ILVFISILPPIN 138 (210)
T ss_pred HHHHhh-----C---CCchhhhhcccchHHHHHHHHHHhccc-ccceeeccCCCC
Confidence 999976 3 2233 4789999999999999999998 455666666655
No 120
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=97.92 E-value=2e-05 Score=69.47 Aligned_cols=113 Identities=18% Similarity=0.125 Sum_probs=68.3
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccC-CCCCCCCCCCCcccccC---CHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSS-LPFGPKSLSSPRLSGYL---TVAQTLADFVDVI 144 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S-~~~~~~s~~~~~~~~~~---t~~~~~~D~~~~i 144 (337)
.+.||++|+..|-. .....+...|++ .|+.|+++|+ ++|.. .+..... ....+..+ ..++..+|+.+.+
T Consensus 14 ~~~Vvv~~d~~G~~---~~~~~~ad~lA~-~Gy~v~~pD~-f~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~aa~ 86 (218)
T PF01738_consen 14 RPAVVVIHDIFGLN---PNIRDLADRLAE-EGYVVLAPDL-FGGRGAPPSDPEE--AFAAMRELFAPRPEQVAADLQAAV 86 (218)
T ss_dssp EEEEEEE-BTTBS----HHHHHHHHHHHH-TT-EEEEE-C-CCCTS--CCCHHC--HHHHHHHCHHHSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCc---hHHHHHHHHHHh-cCCCEEeccc-ccCCCCCccchhh--HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34589999966542 111123445665 4999999998 34444 2211000 00011111 1467788998999
Q ss_pred HHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCc
Q psy1220 145 QSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSA 195 (337)
Q Consensus 145 ~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sa 195 (337)
+.++.+ +.....++.++|.||||.+|+.++.+. ..+++++...+
T Consensus 87 ~~l~~~------~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg 130 (218)
T PF01738_consen 87 DYLRAQ------PEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYG 130 (218)
T ss_dssp HHHHCT------TTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-
T ss_pred HHHHhc------cccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcC
Confidence 999865 222346999999999999999999888 56888887665
No 121
>KOG2281|consensus
Probab=97.83 E-value=0.00017 Score=71.22 Aligned_cols=119 Identities=19% Similarity=0.224 Sum_probs=72.2
Q ss_pred CCCCCc-EEEEeCCCCCcc---chhhhhHHHH-HHHHhcCCcEEEecccccccCCC-CCCCCCCCCcccccCCHHHHHHH
Q psy1220 66 EDGGAP-VFFYCGNEDAIE---TFAENLGFLW-ESAKRFSARVVLVEHRYYGSSLP-FGPKSLSSPRLSGYLTVAQTLAD 139 (337)
Q Consensus 66 ~~~~~p-ivl~hGg~g~~~---~~~~~~~~~~-~la~~~~~~vi~~D~rg~G~S~~-~~~~s~~~~~~~~~~t~~~~~~D 139 (337)
.|++-| ++++-||++-.- .|... -.++ .....+|+.|+++|-||--.-.. +...- ..++....+++.++-
T Consensus 638 pgkkYptvl~VYGGP~VQlVnnsfkgi-~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~i---k~kmGqVE~eDQVeg 713 (867)
T KOG2281|consen 638 PGKKYPTVLNVYGGPGVQLVNNSFKGI-QYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHI---KKKMGQVEVEDQVEG 713 (867)
T ss_pred CCCCCceEEEEcCCCceEEeeccccce-ehhhhhhhhhcceEEEEEcCCCccccchhhHHHH---hhccCeeeehhhHHH
Confidence 443444 667778877422 22211 1121 12245799999999999644321 11000 013344445555555
Q ss_pred HHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCccc
Q psy1220 140 FVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPM 197 (337)
Q Consensus 140 ~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~ 197 (337)
+.-+.+..+ ..+-.++.+-|+||||++++....+||+.++.+|+..++.
T Consensus 714 lq~Laeq~g---------fidmdrV~vhGWSYGGYLSlm~L~~~P~IfrvAIAGapVT 762 (867)
T KOG2281|consen 714 LQMLAEQTG---------FIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRVAIAGAPVT 762 (867)
T ss_pred HHHHHHhcC---------cccchheeEeccccccHHHHHHhhcCcceeeEEeccCcce
Confidence 555555443 1244799999999999999999999999888888776443
No 122
>KOG2100|consensus
Probab=97.81 E-value=8.5e-05 Score=77.18 Aligned_cols=118 Identities=19% Similarity=0.159 Sum_probs=75.5
Q ss_pred CCc-EEEEeCCCCCccchhhh-hHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHH
Q psy1220 69 GAP-VFFYCGNEDAIETFAEN-LGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQS 146 (337)
Q Consensus 69 ~~p-ivl~hGg~g~~~~~~~~-~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~ 146 (337)
+-| +|..|||+++....... .++...++...|+.|+.+|-||-|.....--.+. ..++... -++|....++.
T Consensus 525 kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~--~~~lG~~----ev~D~~~~~~~ 598 (755)
T KOG2100|consen 525 KYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRGSGGYGWDFRSAL--PRNLGDV----EVKDQIEAVKK 598 (755)
T ss_pred CCCEEEEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCCcCCcchhHHHHh--hhhcCCc----chHHHHHHHHH
Confidence 556 56678888754322211 1233346778899999999999775543100000 0122222 34566666666
Q ss_pred HHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcccc
Q psy1220 147 LEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMF 198 (337)
Q Consensus 147 l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~ 198 (337)
+.+. +..+..++.++|+||||+++++...++|+.+.+.-++-+|+.
T Consensus 599 ~~~~------~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVt 644 (755)
T KOG2100|consen 599 VLKL------PFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVT 644 (755)
T ss_pred HHhc------ccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEeccee
Confidence 6654 244668999999999999999999999977777755555664
No 123
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.80 E-value=0.00022 Score=63.96 Aligned_cols=113 Identities=19% Similarity=0.107 Sum_probs=73.8
Q ss_pred cEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccc-cccCCCCCCCCCCCCc-ccccCCHHHHHHHHHHHHHHHH
Q psy1220 71 PVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRY-YGSSLPFGPKSLSSPR-LSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 71 pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg-~G~S~~~~~~s~~~~~-~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
.||++|+-.|-.... ..+..++|+ .|+.|+++|+-+ .|.+....+....... .....+..+.++|+.+.++.|.
T Consensus 29 ~VIv~hei~Gl~~~i---~~~a~rlA~-~Gy~v~~Pdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~ 104 (236)
T COG0412 29 GVIVLHEIFGLNPHI---RDVARRLAK-AGYVVLAPDLYGRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALDYLA 104 (236)
T ss_pred EEEEEecccCCchHH---HHHHHHHHh-CCcEEEechhhccCCCCCcccccHHHHhhhhhccCCHHHHHHHHHHHHHHHH
Confidence 478899965542211 122344554 499999999966 3444433211100000 0012444889999999999998
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecC
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASS 194 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~s 194 (337)
.+ +..+..++.++|.||||.+++.++.+.| .+++.+..-
T Consensus 105 ~~------~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fy 143 (236)
T COG0412 105 RQ------PQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFY 143 (236)
T ss_pred hC------CCCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEec
Confidence 65 2234468999999999999999999999 677777543
No 124
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=97.79 E-value=0.0002 Score=64.40 Aligned_cols=104 Identities=20% Similarity=0.115 Sum_probs=64.7
Q ss_pred CCcEE-EEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHH
Q psy1220 69 GAPVF-FYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSL 147 (337)
Q Consensus 69 ~~piv-l~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l 147 (337)
.-||+ |+||.. ....|. +.++.++| .+|+.||.+|....+... ...-+++++++++++
T Consensus 16 ~yPVv~f~~G~~-~~~s~Y--s~ll~hvA-ShGyIVV~~d~~~~~~~~-----------------~~~~~~~~~~vi~Wl 74 (259)
T PF12740_consen 16 TYPVVLFLHGFL-LINSWY--SQLLEHVA-SHGYIVVAPDLYSIGGPD-----------------DTDEVASAAEVIDWL 74 (259)
T ss_pred CcCEEEEeCCcC-CCHHHH--HHHHHHHH-hCceEEEEecccccCCCC-----------------cchhHHHHHHHHHHH
Confidence 34655 555543 333332 23445555 469999999966533311 122355566666665
Q ss_pred HhhhhhhccC---CCCCCCEEEEecchhHHHHHHHHHhC-----CCceeEeeecC
Q psy1220 148 EDASRLRIGA---AFKPHPVIAFGGSYGGMLAFWLRLKY-----PHIVQGALASS 194 (337)
Q Consensus 148 ~~~~~~~~~~---~~~~~~~il~G~S~GG~la~~~~~~~-----P~~v~~~v~~s 194 (337)
.+. ....++ ..+-.++.+.|||-||-+|..++..+ +..++++++..
T Consensus 75 ~~~-L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lD 128 (259)
T PF12740_consen 75 AKG-LESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLD 128 (259)
T ss_pred Hhc-chhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEec
Confidence 542 000011 23446999999999999999999988 66899999887
No 125
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=97.78 E-value=0.00012 Score=62.26 Aligned_cols=37 Identities=24% Similarity=0.165 Sum_probs=32.1
Q ss_pred CCEEEEecchhHHHHHHHH-HhCCCceeEeeecCcccc
Q psy1220 162 HPVIAFGGSYGGMLAFWLR-LKYPHIVQGALASSAPMF 198 (337)
Q Consensus 162 ~~~il~G~S~GG~la~~~~-~~~P~~v~~~v~~sap~~ 198 (337)
.++++||||+|...++.++ ...+..|.|+++.+++-.
T Consensus 55 ~~~ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~ 92 (171)
T PF06821_consen 55 EPTILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDP 92 (171)
T ss_dssp TTEEEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SC
T ss_pred CCeEEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCc
Confidence 6799999999999999999 889999999999987643
No 126
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=97.78 E-value=6.8e-05 Score=74.40 Aligned_cols=129 Identities=18% Similarity=0.093 Sum_probs=76.1
Q ss_pred eEeeEEEEeCcccCCCCCCc-EEEEeCCCCCccchhhhhHHHHHHHHhcC-CcEEEeccc----ccccCCCCCCCCCCCC
Q psy1220 52 TFPLKYLINDEFWDEDGGAP-VFFYCGNEDAIETFAENLGFLWESAKRFS-ARVVLVEHR----YYGSSLPFGPKSLSSP 125 (337)
Q Consensus 52 tf~qry~~~~~~~~~~~~~p-ivl~hGg~g~~~~~~~~~~~~~~la~~~~-~~vi~~D~r----g~G~S~~~~~~s~~~~ 125 (337)
......|......... +.| ||++|||+.....-... ....++.+.+ ..|+.++.| ||+.+... .
T Consensus 78 cl~l~i~~p~~~~~~~-~~pv~v~ihGG~~~~g~~~~~--~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~-~------ 147 (493)
T cd00312 78 CLYLNVYTPKNTKPGN-SLPVMVWIHGGGFMFGSGSLY--PGDGLAREGDNVIVVSINYRLGVLGFLSTGDI-E------ 147 (493)
T ss_pred CCeEEEEeCCCCCCCC-CCCEEEEEcCCccccCCCCCC--ChHHHHhcCCCEEEEEecccccccccccCCCC-C------
Confidence 3344455443322122 345 68899986432211111 1355666655 889999999 33332211 0
Q ss_pred cccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHh--CCCceeEeeecCcccc
Q psy1220 126 RLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLK--YPHIVQGALASSAPMF 198 (337)
Q Consensus 126 ~~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~--~P~~v~~~v~~sap~~ 198 (337)
..-...+.|....++++++. ...+ +.+..+++|+|+|.||.++.+++.. .+.+++++|+.|++..
T Consensus 148 -----~~~n~g~~D~~~al~wv~~~--i~~f-ggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 148 -----LPGNYGLKDQRLALKWVQDN--IAAF-GGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred -----CCcchhHHHHHHHHHHHHHH--HHHh-CCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 11233566777777777653 0002 2345799999999999999988876 4567999997776654
No 127
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=97.78 E-value=0.00088 Score=61.54 Aligned_cols=103 Identities=14% Similarity=0.208 Sum_probs=60.9
Q ss_pred CcEEEEeCCCCCccchhhhhHHHHHHHH---hcCCcEEEecccc----cccCCCCCCCCCCCCcccccCCHHHHHHHHHH
Q psy1220 70 APVFFYCGNEDAIETFAENLGFLWESAK---RFSARVVLVEHRY----YGSSLPFGPKSLSSPRLSGYLTVAQTLADFVD 142 (337)
Q Consensus 70 ~pivl~hGg~g~~~~~~~~~~~~~~la~---~~~~~vi~~D~rg----~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~ 142 (337)
..+|++.||-++.-..-+ ++..||+ ..++.|+-+-++- +|. -+.++-++|+..
T Consensus 33 ~~~llfIGGLtDGl~tvp---Y~~~La~aL~~~~wsl~q~~LsSSy~G~G~-----------------~SL~~D~~eI~~ 92 (303)
T PF08538_consen 33 PNALLFIGGLTDGLLTVP---YLPDLAEALEETGWSLFQVQLSSSYSGWGT-----------------SSLDRDVEEIAQ 92 (303)
T ss_dssp SSEEEEE--TT--TT-ST---CHHHHHHHHT-TT-EEEEE--GGGBTTS-S-------------------HHHHHHHHHH
T ss_pred CcEEEEECCCCCCCCCCc---hHHHHHHHhccCCeEEEEEEecCccCCcCc-----------------chhhhHHHHHHH
Confidence 346667777665321111 2444544 4578899888764 343 348889999999
Q ss_pred HHHHHHhhhhhhccCC-CCCCCEEEEecchhHHHHHHHHHhCC-----CceeEeeecCcccc
Q psy1220 143 VIQSLEDASRLRIGAA-FKPHPVIAFGGSYGGMLAFWLRLKYP-----HIVQGALASSAPMF 198 (337)
Q Consensus 143 ~i~~l~~~~~~~~~~~-~~~~~~il~G~S~GG~la~~~~~~~P-----~~v~~~v~~sap~~ 198 (337)
+|+.++.. -.+ ....+++|+|||-|.--++.|..+.. ..|+|+|+-+ |+.
T Consensus 93 ~v~ylr~~-----~~g~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQA-pVS 148 (303)
T PF08538_consen 93 LVEYLRSE-----KGGHFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQA-PVS 148 (303)
T ss_dssp HHHHHHHH-----S------S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEE-E--
T ss_pred HHHHHHHh-----hccccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeC-CCC
Confidence 99999865 101 13479999999999999999987753 5699999775 443
No 128
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=97.77 E-value=0.00017 Score=68.00 Aligned_cols=93 Identities=16% Similarity=0.136 Sum_probs=53.5
Q ss_pred HHHHHhcCCcEEEecccccccCCCCCCCCCCCCccccc-----------CCH-HHHHHHHHHHHHHHHhhhhhhccCCCC
Q psy1220 93 WESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGY-----------LTV-AQTLADFVDVIQSLEDASRLRIGAAFK 160 (337)
Q Consensus 93 ~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~-----------~t~-~~~~~D~~~~i~~l~~~~~~~~~~~~~ 160 (337)
.+|++ .|+-|+++|.+|+|+.......... .+..+ .|. -...-|....++.|... +..+
T Consensus 154 ~~LAk-~GYVvla~D~~g~GER~~~e~~~~~--~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~sl------peVD 224 (390)
T PF12715_consen 154 DQLAK-RGYVVLAPDALGFGERGDMEGAAQG--SNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASL------PEVD 224 (390)
T ss_dssp HHHHT-TTSEEEEE--TTSGGG-SSCCCTTT--TS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-------TTEE
T ss_pred HHHHh-CCCEEEEEccccccccccccccccc--cchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcC------cccC
Confidence 44655 5999999999999997654321110 01000 011 11122344466666643 4445
Q ss_pred CCCEEEEecchhHHHHHHHHHhCCCceeEeeecCc
Q psy1220 161 PHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSA 195 (337)
Q Consensus 161 ~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sa 195 (337)
+.++.++|+||||..+++++..-+ +|++.|+++.
T Consensus 225 ~~RIG~~GfSmGg~~a~~LaALDd-RIka~v~~~~ 258 (390)
T PF12715_consen 225 PDRIGCMGFSMGGYRAWWLAALDD-RIKATVANGY 258 (390)
T ss_dssp EEEEEEEEEGGGHHHHHHHHHH-T-T--EEEEES-
T ss_pred ccceEEEeecccHHHHHHHHHcch-hhHhHhhhhh
Confidence 679999999999999999998876 4777776663
No 129
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=97.77 E-value=0.00034 Score=68.21 Aligned_cols=86 Identities=17% Similarity=0.235 Sum_probs=55.1
Q ss_pred CcEEEeccc-ccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHH
Q psy1220 101 ARVVLVEHR-YYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWL 179 (337)
Q Consensus 101 ~~vi~~D~r-g~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~ 179 (337)
+.++.+|+| |.|-|....+.. ..+-++.++|+..|++..-.. ++.....+++++|.||||.-+-.+
T Consensus 116 anllfiDqPvGtGfSy~~~~~~--------~~~d~~~a~~~~~fl~~f~~~-----~p~~~~~~~yi~GESYaG~yvP~l 182 (433)
T PLN03016 116 ANIIFLDQPVGSGFSYSKTPID--------KTGDISEVKRTHEFLQKWLSR-----HPQYFSNPLYVVGDSYSGMIVPAL 182 (433)
T ss_pred CcEEEecCCCCCCccCCCCCCC--------ccCCHHHHHHHHHHHHHHHHh-----ChhhcCCCEEEEccCccceehHHH
Confidence 579999966 899886432111 111223447888888877654 555556799999999999754444
Q ss_pred HH----hC------CCceeEeeecCccccc
Q psy1220 180 RL----KY------PHIVQGALASSAPMFQ 199 (337)
Q Consensus 180 ~~----~~------P~~v~~~v~~sap~~~ 199 (337)
+. +. +=.++|+++.++.+.+
T Consensus 183 a~~i~~~n~~~~~~~inLkGi~iGNg~t~~ 212 (433)
T PLN03016 183 VQEISQGNYICCEPPINLQGYMLGNPVTYM 212 (433)
T ss_pred HHHHHhhcccccCCcccceeeEecCCCcCc
Confidence 33 22 2257788888765433
No 130
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=97.75 E-value=0.00022 Score=63.77 Aligned_cols=106 Identities=13% Similarity=0.079 Sum_probs=68.5
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCC--cEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSA--RVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQS 146 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~--~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~ 146 (337)
+..+||+||.--+ +.....-..++....++ .+|.+.+|..|.-..... ..-+......+++.+++.
T Consensus 18 ~~vlvfVHGyn~~---f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~~~Y~~---------d~~~a~~s~~~l~~~L~~ 85 (233)
T PF05990_consen 18 KEVLVFVHGYNNS---FEDALRRAAQLAHDLGFPGVVILFSWPSDGSLLGYFY---------DRESARFSGPALARFLRD 85 (233)
T ss_pred CeEEEEEeCCCCC---HHHHHHHHHHHHHHhCCCceEEEEEcCCCCChhhhhh---------hhhhHHHHHHHHHHHHHH
Confidence 5678999996554 22222224455555544 799999998876322110 112466777888888888
Q ss_pred HHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHh----CC-----CceeEeeecC
Q psy1220 147 LEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLK----YP-----HIVQGALASS 194 (337)
Q Consensus 147 l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~----~P-----~~v~~~v~~s 194 (337)
+.+. ....++++++||||+.+.+..... .+ ..+..+++.+
T Consensus 86 L~~~--------~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~A 134 (233)
T PF05990_consen 86 LARA--------PGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAA 134 (233)
T ss_pred HHhc--------cCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEEC
Confidence 8743 134799999999999998877544 22 2455666665
No 131
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=97.68 E-value=6.5e-05 Score=70.62 Aligned_cols=108 Identities=10% Similarity=0.068 Sum_probs=62.3
Q ss_pred CCcEEEEeCCCCCc-c-chhhhhHHHHHHHHh--cCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAI-E-TFAENLGFLWESAKR--FSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVI 144 (337)
Q Consensus 69 ~~pivl~hGg~g~~-~-~~~~~~~~~~~la~~--~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i 144 (337)
...+|++||..++. . .|.. .+...+.+. .++.||++|+...-.. .. ......++...+.++.++
T Consensus 71 ~pt~iiiHGw~~~~~~~~~~~--~~~~all~~~~~d~NVI~VDWs~~a~~-~Y---------~~a~~n~~~vg~~la~~l 138 (331)
T PF00151_consen 71 KPTVIIIHGWTGSGSSESWIQ--DMIKALLQKDTGDYNVIVVDWSRGASN-NY---------PQAVANTRLVGRQLAKFL 138 (331)
T ss_dssp SEEEEEE--TT-TT-TTTHHH--HHHHHHHCC--S-EEEEEEE-HHHHSS--H---------HHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEcCcCCcccchhHHH--HHHHHHHhhccCCceEEEEcchhhccc-cc---------cchhhhHHHHHHHHHHHH
Confidence 45689999977765 2 2322 123334333 4678999999754321 10 000011344455666677
Q ss_pred HHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCC--ceeEeeecC
Q psy1220 145 QSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPH--IVQGALASS 194 (337)
Q Consensus 145 ~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~--~v~~~v~~s 194 (337)
+.|... . ..+.++++++|||+|+-+|..+..+... .|..+....
T Consensus 139 ~~L~~~-----~-g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLD 184 (331)
T PF00151_consen 139 SFLINN-----F-GVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLD 184 (331)
T ss_dssp HHHHHH-----H----GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES
T ss_pred HHHHhh-----c-CCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecC
Confidence 777643 1 2244799999999999999999999888 888888655
No 132
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=97.68 E-value=0.00013 Score=63.71 Aligned_cols=92 Identities=22% Similarity=0.224 Sum_probs=62.5
Q ss_pred EEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhh
Q psy1220 72 VFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDAS 151 (337)
Q Consensus 72 ivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~ 151 (337)
-+++-|+.|-...|.. -+...+.+.|+.|+.+|.||-|+|.|...... ..++ .+-+..|+.+.++.+++.
T Consensus 32 ~~~va~a~Gv~~~fYR---rfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~----~~~~--~DwA~~D~~aal~~~~~~- 101 (281)
T COG4757 32 RLVVAGATGVGQYFYR---RFAAAAAKAGFEVLTFDYRGIGQSRPASLSGS----QWRY--LDWARLDFPAALAALKKA- 101 (281)
T ss_pred cEEecccCCcchhHhH---HHHHHhhccCceEEEEecccccCCCccccccC----ccch--hhhhhcchHHHHHHHHhh-
Confidence 3455555554333322 14455567789999999999999998542211 2333 455778999999999864
Q ss_pred hhhccCCCCCCCEEEEecchhHHHHHHHH
Q psy1220 152 RLRIGAAFKPHPVIAFGGSYGGMLAFWLR 180 (337)
Q Consensus 152 ~~~~~~~~~~~~~il~G~S~GG~la~~~~ 180 (337)
. +..|...+||||||-+...+.
T Consensus 102 ----~---~~~P~y~vgHS~GGqa~gL~~ 123 (281)
T COG4757 102 ----L---PGHPLYFVGHSFGGQALGLLG 123 (281)
T ss_pred ----C---CCCceEEeeccccceeecccc
Confidence 3 447999999999998755444
No 133
>KOG1515|consensus
Probab=97.68 E-value=0.0025 Score=59.90 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=71.9
Q ss_pred CcEEEEeCCCCCccc--hhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHH-
Q psy1220 70 APVFFYCGNEDAIET--FAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQS- 146 (337)
Q Consensus 70 ~pivl~hGg~g~~~~--~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~- 146 (337)
+.||++|||+.-..+ +.....+...++.+.+..|+.+|.|=-=+.. ... ..++..+-+..+.+.
T Consensus 91 p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPEh~----~Pa---------~y~D~~~Al~w~~~~~ 157 (336)
T KOG1515|consen 91 PVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPEHP----FPA---------AYDDGWAALKWVLKNS 157 (336)
T ss_pred eEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCCCC----CCc---------cchHHHHHHHHHHHhH
Confidence 347899999875542 4444567888999999999999998642221 111 133344444444442
Q ss_pred -HHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhC------CCceeEeeecCccccc
Q psy1220 147 -LEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKY------PHIVQGALASSAPMFQ 199 (337)
Q Consensus 147 -l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~------P~~v~~~v~~sap~~~ 199 (337)
++ ...+.+++.|.|-|-||.||..++++. +-.++|.|+..+-...
T Consensus 158 ~~~--------~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~ 209 (336)
T KOG1515|consen 158 WLK--------LGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQG 209 (336)
T ss_pred HHH--------hCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCC
Confidence 22 133457899999999999999888653 3568899988744433
No 134
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=97.67 E-value=0.00019 Score=74.73 Aligned_cols=92 Identities=16% Similarity=-0.060 Sum_probs=66.2
Q ss_pred HHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhhh--h-------ccCCCCCCC
Q psy1220 93 WESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRL--R-------IGAAFKPHP 163 (337)
Q Consensus 93 ~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~~~--~-------~~~~~~~~~ 163 (337)
.++....|+.|+..|.||.|.|..... .+ ..+-.+|..+.|+++..+... . .-+.. ..+
T Consensus 272 ~~~~~~rGYaVV~~D~RGtg~SeG~~~----------~~-~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~Ws-nGk 339 (767)
T PRK05371 272 NDYFLPRGFAVVYVSGIGTRGSDGCPT----------TG-DYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWS-NGK 339 (767)
T ss_pred HHHHHhCCeEEEEEcCCCCCCCCCcCc----------cC-CHHHHHHHHHHHHHHhhCCccccccccccccccCCC-CCe
Confidence 344445699999999999999987421 11 245678999999999842000 0 00111 369
Q ss_pred EEEEecchhHHHHHHHHHhCCCceeEeeecCcc
Q psy1220 164 VIAFGGSYGGMLAFWLRLKYPHIVQGALASSAP 196 (337)
Q Consensus 164 ~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap 196 (337)
+.++|.||||+++..+|...|..++++|..++.
T Consensus 340 VGm~G~SY~G~~~~~aAa~~pp~LkAIVp~a~i 372 (767)
T PRK05371 340 VAMTGKSYLGTLPNAVATTGVEGLETIIPEAAI 372 (767)
T ss_pred eEEEEEcHHHHHHHHHHhhCCCcceEEEeeCCC
Confidence 999999999999999999999999999975543
No 135
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=97.65 E-value=0.0004 Score=57.41 Aligned_cols=107 Identities=18% Similarity=0.200 Sum_probs=66.0
Q ss_pred cEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccC-----CCCCCCCCCCCcccccCCHHHHHHHHHHHHH
Q psy1220 71 PVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSS-----LPFGPKSLSSPRLSGYLTVAQTLADFVDVIQ 145 (337)
Q Consensus 71 pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S-----~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~ 145 (337)
.|+|-||.+++.++-.... ....|+ ..|+.|..+|.+|.-.- .|.... ..+ ....+..+++
T Consensus 16 tilLaHGAGasmdSt~m~~-~a~~la-~~G~~vaRfefpYma~Rrtg~rkPp~~~--------~t~-~~~~~~~~aq--- 81 (213)
T COG3571 16 TILLAHGAGASMDSTSMTA-VAAALA-RRGWLVARFEFPYMAARRTGRRKPPPGS--------GTL-NPEYIVAIAQ--- 81 (213)
T ss_pred EEEEecCCCCCCCCHHHHH-HHHHHH-hCceeEEEeecchhhhccccCCCCcCcc--------ccC-CHHHHHHHHH---
Confidence 4788899888765443211 122233 45889999999875432 222111 111 1223333333
Q ss_pred HHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcccccc
Q psy1220 146 SLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQT 200 (337)
Q Consensus 146 ~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~~~ 200 (337)
++.. + ...|.++-|+||||-++..++..--..|++++..+-|+.+.
T Consensus 82 -l~~~-----l---~~gpLi~GGkSmGGR~aSmvade~~A~i~~L~clgYPfhpp 127 (213)
T COG3571 82 -LRAG-----L---AEGPLIIGGKSMGGRVASMVADELQAPIDGLVCLGYPFHPP 127 (213)
T ss_pred -HHhc-----c---cCCceeeccccccchHHHHHHHhhcCCcceEEEecCccCCC
Confidence 3332 2 22599999999999999999876555599999988887654
No 136
>COG0400 Predicted esterase [General function prediction only]
Probab=97.60 E-value=0.00021 Score=62.58 Aligned_cols=55 Identities=22% Similarity=0.349 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCccc
Q psy1220 137 LADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPM 197 (337)
Q Consensus 137 ~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~ 197 (337)
.+.++++++.+.++ + ..+.++++++|.|=|+++++.+..++|+.++++++.++-.
T Consensus 80 ~~~~~~~l~~~~~~-----~-gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~ 134 (207)
T COG0400 80 TEKLAEFLEELAEE-----Y-GIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGML 134 (207)
T ss_pred HHHHHHHHHHHHHH-----h-CCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcC
Confidence 34445555555544 2 4455899999999999999999999999999999877543
No 137
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=97.59 E-value=0.00018 Score=67.88 Aligned_cols=104 Identities=16% Similarity=0.081 Sum_probs=66.8
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCc---EEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSAR---VVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQ 145 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~---vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~ 145 (337)
..|++++||..+....|.. +.......++. +..+++++-..+.+ ..-..+|...-+.+.+.
T Consensus 59 ~~pivlVhG~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~------------~~~~~~ql~~~V~~~l~ 122 (336)
T COG1075 59 KEPIVLVHGLGGGYGNFLP----LDYRLAILGWLTNGVYAFELSGGDGTYS------------LAVRGEQLFAYVDEVLA 122 (336)
T ss_pred CceEEEEccCcCCcchhhh----hhhhhcchHHHhcccccccccccCCCcc------------ccccHHHHHHHHHHHHh
Confidence 5699999998655555543 23323333443 78888776511111 01123444443333333
Q ss_pred HHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCC--CceeEeeecCcccccc
Q psy1220 146 SLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYP--HIVQGALASSAPMFQT 200 (337)
Q Consensus 146 ~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P--~~v~~~v~~sap~~~~ 200 (337)
..+ .+++.++||||||.++.+++..++ ..|+.++..+.|..-.
T Consensus 123 ~~g------------a~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp~~Gt 167 (336)
T COG1075 123 KTG------------AKKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTPHHGT 167 (336)
T ss_pred hcC------------CCceEEEeecccchhhHHHHhhcCccceEEEEEEeccCCCCc
Confidence 322 269999999999999999999999 8999999888786544
No 138
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=97.57 E-value=0.00031 Score=62.10 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=26.2
Q ss_pred CCEEEEecchhHHHHHHHHHh---C----CC-----ceeEeeecCcccccc
Q psy1220 162 HPVIAFGGSYGGMLAFWLRLK---Y----PH-----IVQGALASSAPMFQT 200 (337)
Q Consensus 162 ~~~il~G~S~GG~la~~~~~~---~----P~-----~v~~~v~~sap~~~~ 200 (337)
.|++++||||||.++..+... . |+ .....+..++|....
T Consensus 78 ~~IsfIgHSLGGli~r~al~~~~~~~~~~~~~~~~~~~~~fitlatPH~G~ 128 (217)
T PF05057_consen 78 RKISFIGHSLGGLIARYALGLLHDKPQYFPGFFQKIKPHNFITLATPHLGS 128 (217)
T ss_pred ccceEEEecccHHHHHHHHHHhhhccccccccccceeeeeEEEeCCCCCCC
Confidence 589999999999999766542 2 22 233445567776654
No 139
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=97.55 E-value=0.00031 Score=60.36 Aligned_cols=72 Identities=14% Similarity=0.176 Sum_probs=49.8
Q ss_pred CcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHH
Q psy1220 101 ARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLR 180 (337)
Q Consensus 101 ~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~ 180 (337)
..|+.+|.+|+|.+.+.. .+.+..++++...+.... ...+++++|||+||.++..++
T Consensus 26 ~~v~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~l~~~~-----------~~~~~~l~g~s~Gg~~a~~~a 82 (212)
T smart00824 26 RDVSALPLPGFGPGEPLP------------ASADALVEAQAEAVLRAA-----------GGRPFVLVGHSSGGLLAHAVA 82 (212)
T ss_pred ccEEEecCCCCCCCCCCC------------CCHHHHHHHHHHHHHHhc-----------CCCCeEEEEECHHHHHHHHHH
Confidence 479999999998765532 124555555444433222 236899999999999998888
Q ss_pred Hh---CCCceeEeeecCc
Q psy1220 181 LK---YPHIVQGALASSA 195 (337)
Q Consensus 181 ~~---~P~~v~~~v~~sa 195 (337)
.+ .++.+.++++..+
T Consensus 83 ~~l~~~~~~~~~l~~~~~ 100 (212)
T smart00824 83 ARLEARGIPPAAVVLLDT 100 (212)
T ss_pred HHHHhCCCCCcEEEEEcc
Confidence 76 4566888875543
No 140
>KOG4627|consensus
Probab=97.55 E-value=0.00031 Score=60.41 Aligned_cols=104 Identities=18% Similarity=0.064 Sum_probs=71.6
Q ss_pred CcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHh
Q psy1220 70 APVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLED 149 (337)
Q Consensus 70 ~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~ 149 (337)
+-.+|+|||-+.......... +..-|.+.|++|..+ |||.+.. .-+.+|.+.|+...++.+.+
T Consensus 68 klfIfIHGGYW~~g~rk~cls-iv~~a~~~gY~vasv---gY~l~~q-------------~htL~qt~~~~~~gv~filk 130 (270)
T KOG4627|consen 68 KLFIFIHGGYWQEGDRKMCLS-IVGPAVRRGYRVASV---GYNLCPQ-------------VHTLEQTMTQFTHGVNFILK 130 (270)
T ss_pred cEEEEEecchhhcCchhcccc-hhhhhhhcCeEEEEe---ccCcCcc-------------cccHHHHHHHHHHHHHHHHH
Confidence 446889998765444333222 344566778888887 5566542 24588999999999988875
Q ss_pred hhhhhccCCCCCCCEEEEecchhHHHHHHHH-HhCCCceeEeeecCccc
Q psy1220 150 ASRLRIGAAFKPHPVIAFGGSYGGMLAFWLR-LKYPHIVQGALASSAPM 197 (337)
Q Consensus 150 ~~~~~~~~~~~~~~~il~G~S~GG~la~~~~-~~~P~~v~~~v~~sap~ 197 (337)
. ++ +.+++.+-|||-|+.+|+... +.+..+|.|++++++..
T Consensus 131 ~-----~~--n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY 172 (270)
T KOG4627|consen 131 Y-----TE--NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVY 172 (270)
T ss_pred h-----cc--cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHh
Confidence 4 32 224577889999999998764 34556799999887553
No 141
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=97.54 E-value=0.0019 Score=62.57 Aligned_cols=38 Identities=24% Similarity=0.498 Sum_probs=33.7
Q ss_pred CCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCccc
Q psy1220 160 KPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPM 197 (337)
Q Consensus 160 ~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~ 197 (337)
+..+.+|.|+||||..|+.++.+||+.+.++++.|+.+
T Consensus 286 d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ 323 (411)
T PRK10439 286 DADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSF 323 (411)
T ss_pred CccceEEEEEChHHHHHHHHHHhCcccccEEEEeccce
Confidence 34678999999999999999999999999999887654
No 142
>PLN02209 serine carboxypeptidase
Probab=97.54 E-value=0.0018 Score=63.27 Aligned_cols=85 Identities=18% Similarity=0.243 Sum_probs=56.1
Q ss_pred CcEEEeccc-ccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHH---
Q psy1220 101 ARVVLVEHR-YYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLA--- 176 (337)
Q Consensus 101 ~~vi~~D~r-g~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la--- 176 (337)
+.++.+|+| |.|-|....+. ...+.++.++|+..|++..-+. ++.....+++++|.||||.-+
T Consensus 118 anllfiDqPvGtGfSy~~~~~--------~~~~~~~~a~~~~~fl~~f~~~-----~p~~~~~~~yi~GESYaG~yvP~~ 184 (437)
T PLN02209 118 ANIIFLDQPVGSGFSYSKTPI--------ERTSDTSEVKKIHEFLQKWLIK-----HPQFLSNPFYVVGDSYSGMIVPAL 184 (437)
T ss_pred CcEEEecCCCCCCccCCCCCC--------CccCCHHHHHHHHHHHHHHHHh-----CccccCCCEEEEecCcCceehHHH
Confidence 579999966 88888543211 1122345568998888887665 555566799999999999744
Q ss_pred -HHHHHhC------CCceeEeeecCcccc
Q psy1220 177 -FWLRLKY------PHIVQGALASSAPMF 198 (337)
Q Consensus 177 -~~~~~~~------P~~v~~~v~~sap~~ 198 (337)
..+..+. +=.++|+++.++-+.
T Consensus 185 a~~i~~~~~~~~~~~inl~Gi~igng~td 213 (437)
T PLN02209 185 VHEISKGNYICCNPPINLQGYVLGNPITH 213 (437)
T ss_pred HHHHHhhcccccCCceeeeeEEecCcccC
Confidence 4443322 114678888776544
No 143
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=97.53 E-value=0.002 Score=61.23 Aligned_cols=55 Identities=24% Similarity=0.321 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhhhhhccCCCC-CCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcccc
Q psy1220 139 DFVDVIQSLEDASRLRIGAAFK-PHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMF 198 (337)
Q Consensus 139 D~~~~i~~l~~~~~~~~~~~~~-~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~ 198 (337)
|+...+..+... ++... .-|+|++|+|+||+||...+.-.|..+++++--|+-+.
T Consensus 165 D~INAl~~l~k~-----~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~ 220 (403)
T PF11144_consen 165 DIINALLDLKKI-----FPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYAL 220 (403)
T ss_pred HHHHHHHHHHHh-----hhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCcccc
Confidence 444444445443 43333 25999999999999999999999999999995554443
No 144
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.48 E-value=0.0011 Score=59.33 Aligned_cols=113 Identities=19% Similarity=0.151 Sum_probs=71.4
Q ss_pred CcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCC---CCC-CCC-------CcccccCCHHHHHH
Q psy1220 70 APVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFG---PKS-LSS-------PRLSGYLTVAQTLA 138 (337)
Q Consensus 70 ~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~---~~s-~~~-------~~~~~~~t~~~~~~ 138 (337)
+.||-+||-.|..+.|.. +-.++. .|+.|+.+|-||-|.|+-.. ..+ ..+ -++-+.+-......
T Consensus 84 P~vV~fhGY~g~~g~~~~----~l~wa~-~Gyavf~MdvRGQg~~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~ 158 (321)
T COG3458 84 PAVVQFHGYGGRGGEWHD----MLHWAV-AGYAVFVMDVRGQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFL 158 (321)
T ss_pred ceEEEEeeccCCCCCccc----cccccc-cceeEEEEecccCCCccccCCCCCCCCcCCceeEeecccCCCceEEeeehH
Confidence 448889997666544433 233333 47889999999999884311 111 000 01122233445566
Q ss_pred HHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecC
Q psy1220 139 DFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASS 194 (337)
Q Consensus 139 D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~s 194 (337)
|+...++.+.. ++..+..++.+.|+|-||.||+..+..-|. ++++++.-
T Consensus 159 D~~~ave~~~s------l~~vde~Ri~v~G~SqGGglalaaaal~~r-ik~~~~~~ 207 (321)
T COG3458 159 DAVRAVEILAS------LDEVDEERIGVTGGSQGGGLALAAAALDPR-IKAVVADY 207 (321)
T ss_pred HHHHHHHHHhc------cCccchhheEEeccccCchhhhhhhhcChh-hhcccccc
Confidence 77777777664 233455799999999999999999887774 66666443
No 145
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=97.43 E-value=0.00016 Score=69.40 Aligned_cols=125 Identities=21% Similarity=0.191 Sum_probs=57.1
Q ss_pred CCc-EEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccC--CCCCCCC-----------CC-------C--C
Q psy1220 69 GAP-VFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSS--LPFGPKS-----------LS-------S--P 125 (337)
Q Consensus 69 ~~p-ivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S--~~~~~~s-----------~~-------~--~ 125 (337)
+-| |||-||..|+-..+ +.+..+||.. |+-|+++|||..-.+ ....+.. .+ . +
T Consensus 99 ~~PvvIFSHGlgg~R~~y---S~~~~eLAS~-GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T PF03403_consen 99 KFPVVIFSHGLGGSRTSY---SAICGELASH-GYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDP 174 (379)
T ss_dssp -EEEEEEE--TT--TTTT---HHHHHHHHHT-T-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----G
T ss_pred CCCEEEEeCCCCcchhhH---HHHHHHHHhC-CeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccc
Confidence 345 56779988885544 3367788875 999999999964211 0100000 00 0 0
Q ss_pred cccccC---CHHHHHHHHHHHHHHHHhhh-h--hh----------cc-CCCCCCCEEEEecchhHHHHHHHHHhCCCcee
Q psy1220 126 RLSGYL---TVAQTLADFVDVIQSLEDAS-R--LR----------IG-AAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQ 188 (337)
Q Consensus 126 ~~~~~~---t~~~~~~D~~~~i~~l~~~~-~--~~----------~~-~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~ 188 (337)
+....+ -++.-++|+...++.+.+-+ + .. .+ ...+..++.++|||+||+.++..+.+- .+++
T Consensus 175 ~~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d-~r~~ 253 (379)
T PF03403_consen 175 EEEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQD-TRFK 253 (379)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH--TT--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhc-cCcc
Confidence 000001 11233556666666554310 0 00 00 001125799999999999999988777 5577
Q ss_pred EeeecCcccc
Q psy1220 189 GALASSAPMF 198 (337)
Q Consensus 189 ~~v~~sap~~ 198 (337)
..|+..+-+.
T Consensus 254 ~~I~LD~W~~ 263 (379)
T PF03403_consen 254 AGILLDPWMF 263 (379)
T ss_dssp EEEEES---T
T ss_pred eEEEeCCccc
Confidence 7776665444
No 146
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=97.41 E-value=0.0011 Score=58.92 Aligned_cols=115 Identities=16% Similarity=0.197 Sum_probs=76.2
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcC----CcEEEecccccccCCCC-CCCCCCC--C------cccccCCHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFS----ARVVLVEHRYYGSSLPF-GPKSLSS--P------RLSGYLTVAQ 135 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~----~~vi~~D~rg~G~S~~~-~~~s~~~--~------~~~~~~t~~~ 135 (337)
--|.+|+||..|+..+.. +++.++.++.+ ..++..|--| |..+ +..+-+. | ++ ..-+..+
T Consensus 45 ~iPTIfIhGsgG~asS~~---~Mv~ql~~~~~~~~e~Lt~~V~~dg---slk~tGk~~Kd~~nP~I~~gfe~-n~~s~~~ 117 (288)
T COG4814 45 AIPTIFIHGSGGTASSLN---GMVNQLLPDYKAGTESLTMTVDVDG---SLKVTGKISKDAKNPIIEFGFED-NTASGLD 117 (288)
T ss_pred ccceEEEecCCCChhHHH---HHHHHhhhcccccccceEEEEcCCC---cEEEeeeecccCCCCeEEEEEec-CcCchhh
Confidence 458999999999877653 35777776653 3566666655 2111 0000000 0 00 1123444
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCC-----ceeEeeecCcccc
Q psy1220 136 TLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPH-----IVQGALASSAPMF 198 (337)
Q Consensus 136 ~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~-----~v~~~v~~sap~~ 198 (337)
....+...+..|+.+ + +..++.++||||||.-...++..|-. .+..+|...+|..
T Consensus 118 ~s~wlk~~msyL~~~-----Y---~i~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN 177 (288)
T COG4814 118 QSKWLKKAMSYLQKH-----Y---NIPKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFN 177 (288)
T ss_pred HHHHHHHHHHHHHHh-----c---CCceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEeccccc
Confidence 577788888889876 4 45799999999999999999988743 3788888888877
No 147
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=97.36 E-value=0.0014 Score=63.32 Aligned_cols=119 Identities=15% Similarity=0.171 Sum_probs=72.1
Q ss_pred CCc-EEEEeCCCCCccchhh--hhHH--H----------HHHHHhcCCcEEEeccc-ccccCCCCCCCCCCCCcccccCC
Q psy1220 69 GAP-VFFYCGNEDAIETFAE--NLGF--L----------WESAKRFSARVVLVEHR-YYGSSLPFGPKSLSSPRLSGYLT 132 (337)
Q Consensus 69 ~~p-ivl~hGg~g~~~~~~~--~~~~--~----------~~la~~~~~~vi~~D~r-g~G~S~~~~~~s~~~~~~~~~~t 132 (337)
..| ||.+.||+|..+.+.. ..|. + ...+=...+.|+.+|+| |.|-|..... .....+
T Consensus 39 ~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~~an~l~iD~PvGtGfS~~~~~-------~~~~~~ 111 (415)
T PF00450_consen 39 DDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNKFANLLFIDQPVGTGFSYGNDP-------SDYVWN 111 (415)
T ss_dssp SS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGGTSEEEEE--STTSTT-EESSG-------GGGS-S
T ss_pred CccEEEEecCCceeccccccccccCceEEeecccccccccccccccccceEEEeecCceEEeecccc-------ccccch
Confidence 556 6788999997664421 0000 0 00000112589999977 8998876421 113457
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHH----HhC------CCceeEeeecCccccc
Q psy1220 133 VAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLR----LKY------PHIVQGALASSAPMFQ 199 (337)
Q Consensus 133 ~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~----~~~------P~~v~~~v~~sap~~~ 199 (337)
.++.++|+..|++..-.+ ++.....|++|.|.||||.-+..++ .+. +=.++|+++.++-+..
T Consensus 112 ~~~~a~~~~~fl~~f~~~-----~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inLkGi~IGng~~dp 183 (415)
T PF00450_consen 112 DDQAAEDLYEFLQQFFQK-----FPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINLKGIAIGNGWIDP 183 (415)
T ss_dssp HHHHHHHHHHHHHHHHHH-----SGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEEEEEEEESE-SBH
T ss_pred hhHHHHHHHHHHHHhhhh-----hhhccCCCEEEEccccccccchhhHHhhhhccccccccccccccceecCccccc
Confidence 899999999999998776 6656667999999999997654444 333 2347898888765543
No 148
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=97.32 E-value=0.0057 Score=55.04 Aligned_cols=40 Identities=20% Similarity=0.349 Sum_probs=35.1
Q ss_pred CCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCccccc
Q psy1220 160 KPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQ 199 (337)
Q Consensus 160 ~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~~ 199 (337)
+.++-.++|||+||.+++....++|+.+...+++|+.+..
T Consensus 135 ~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlWw 174 (264)
T COG2819 135 NSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLWW 174 (264)
T ss_pred CcccceeeeecchhHHHHHHHhcCcchhceeeeecchhhh
Confidence 4467999999999999999999999999999998865543
No 149
>PRK04940 hypothetical protein; Provisional
Probab=97.24 E-value=0.0019 Score=55.03 Aligned_cols=54 Identities=7% Similarity=0.135 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCccc
Q psy1220 133 VAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPM 197 (337)
Q Consensus 133 ~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~ 197 (337)
.+++++-+.+.++.+... ....++.++|+|+||+-|.|++.+|. +++ |+..+.+
T Consensus 39 P~~a~~~l~~~i~~~~~~--------~~~~~~~liGSSLGGyyA~~La~~~g--~~a-VLiNPAv 92 (180)
T PRK04940 39 PKHDMQHLLKEVDKMLQL--------SDDERPLICGVGLGGYWAERIGFLCG--IRQ-VIFNPNL 92 (180)
T ss_pred HHHHHHHHHHHHHHhhhc--------cCCCCcEEEEeChHHHHHHHHHHHHC--CCE-EEECCCC
Confidence 566666666666654321 01247999999999999999999997 444 4444334
No 150
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=97.24 E-value=0.0016 Score=58.13 Aligned_cols=100 Identities=21% Similarity=0.190 Sum_probs=61.2
Q ss_pred CCc-EEEEeCCCCCccchhhhhHHHHHHH---HhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHH
Q psy1220 69 GAP-VFFYCGNEDAIETFAENLGFLWESA---KRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVI 144 (337)
Q Consensus 69 ~~p-ivl~hGg~g~~~~~~~~~~~~~~la---~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i 144 (337)
.-| |+|+|| |.....+..++. ..+|+.||++++-. ...+. -.+-+++.++++
T Consensus 45 ~yPVilF~HG-------~~l~ns~Ys~lL~HIASHGfIVVAPQl~~--~~~p~---------------~~~Ei~~aa~V~ 100 (307)
T PF07224_consen 45 TYPVILFLHG-------FNLYNSFYSQLLAHIASHGFIVVAPQLYT--LFPPD---------------GQDEIKSAASVI 100 (307)
T ss_pred CccEEEEeec-------hhhhhHHHHHHHHHHhhcCeEEEechhhc--ccCCC---------------chHHHHHHHHHH
Confidence 445 567788 443333444433 35799999999853 22221 223467777777
Q ss_pred HHHHhhhhhhc-cC---CCCCCCEEEEecchhHHHHHHHHHhCC-Cc-eeEeeecC
Q psy1220 145 QSLEDASRLRI-GA---AFKPHPVIAFGGSYGGMLAFWLRLKYP-HI-VQGALASS 194 (337)
Q Consensus 145 ~~l~~~~~~~~-~~---~~~~~~~il~G~S~GG~la~~~~~~~P-~~-v~~~v~~s 194 (337)
+++... ... ++ ..+-.+..++|||.||-.|..+|..|- +. +.++|...
T Consensus 101 ~WL~~g--L~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiD 154 (307)
T PF07224_consen 101 NWLPEG--LQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGID 154 (307)
T ss_pred HHHHhh--hhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheeccc
Confidence 777642 000 11 233469999999999999999999884 32 44555443
No 151
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=97.13 E-value=0.0044 Score=53.10 Aligned_cols=95 Identities=23% Similarity=0.219 Sum_probs=68.3
Q ss_pred EEEEeCCCCCccchh-hhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhh
Q psy1220 72 VFFYCGNEDAIETFA-ENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDA 150 (337)
Q Consensus 72 ivl~hGg~g~~~~~~-~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~ 150 (337)
+||+-|-+| |. .+.++...|++ .|+.|+.+|-+-|=-+.. |.+|..+|++++++...++
T Consensus 5 ~v~~SGDgG----w~~~d~~~a~~l~~-~G~~VvGvdsl~Yfw~~r---------------tP~~~a~Dl~~~i~~y~~~ 64 (192)
T PF06057_consen 5 AVFFSGDGG----WRDLDKQIAEALAK-QGVPVVGVDSLRYFWSER---------------TPEQTAADLARIIRHYRAR 64 (192)
T ss_pred EEEEeCCCC----chhhhHHHHHHHHH-CCCeEEEechHHHHhhhC---------------CHHHHHHHHHHHHHHHHHH
Confidence 566666333 22 22233444554 489999999876655543 3789999999999998876
Q ss_pred hhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCC----ceeEeeecC
Q psy1220 151 SRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPH----IVQGALASS 194 (337)
Q Consensus 151 ~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~----~v~~~v~~s 194 (337)
. +..+++|+|.|+|+-+.-...-+-|. .|..+++.+
T Consensus 65 -----w---~~~~vvLiGYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~ 104 (192)
T PF06057_consen 65 -----W---GRKRVVLIGYSFGADVLPFIYNRLPAALRARVAQVVLLS 104 (192)
T ss_pred -----h---CCceEEEEeecCCchhHHHHHhhCCHHHHhheeEEEEec
Confidence 4 45799999999999888888877775 566777665
No 152
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.05 E-value=0.0038 Score=58.30 Aligned_cols=120 Identities=11% Similarity=0.135 Sum_probs=73.5
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCC--cEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSA--RVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQS 146 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~--~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~ 146 (337)
+..++|+||..-+ |....--..++....|+ ..|.+-+|.-|+-... +...-+.++...+++.+++.
T Consensus 116 k~vlvFvHGfNnt---f~dav~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Y---------n~DreS~~~Sr~aLe~~lr~ 183 (377)
T COG4782 116 KTVLVFVHGFNNT---FEDAVYRTAQIVHDSGNDGVPVVFSWPSRGSLLGY---------NYDRESTNYSRPALERLLRY 183 (377)
T ss_pred CeEEEEEcccCCc---hhHHHHHHHHHHhhcCCCcceEEEEcCCCCeeeec---------ccchhhhhhhHHHHHHHHHH
Confidence 5678999994433 22211112334444454 5667777766653322 22224478889999999999
Q ss_pred HHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHh--------CCCceeEeeecCccccccCCCCChhHHHHHHHH
Q psy1220 147 LEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLK--------YPHIVQGALASSAPMFQTNDLAPCDIYYKEVTK 215 (337)
Q Consensus 147 l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~--------~P~~v~~~v~~sap~~~~~~~~~~~~~~~~v~~ 215 (337)
|.++ - +..+++|++||||.++.+...++ -|..+.-+|+.++-+ |-+.|.+++..
T Consensus 184 La~~-----~---~~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDi-------D~DVF~~Q~~~ 245 (377)
T COG4782 184 LATD-----K---PVKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDI-------DVDVFSSQIAA 245 (377)
T ss_pred HHhC-----C---CCceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCC-------ChhhHHHHHHH
Confidence 9865 2 34789999999999999987654 233455555555322 44555555543
No 153
>COG3150 Predicted esterase [General function prediction only]
Probab=97.05 E-value=0.0036 Score=52.17 Aligned_cols=87 Identities=20% Similarity=0.314 Sum_probs=59.7
Q ss_pred EEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhh
Q psy1220 72 VFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDAS 151 (337)
Q Consensus 72 ivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~ 151 (337)
|+++||.-++..+... .+..+ -+..|.|..+-|.|.... ...++++.+..+|...+.
T Consensus 2 ilYlHGFnSSP~shka------~l~~q----~~~~~~~~i~y~~p~l~h-----------~p~~a~~ele~~i~~~~~-- 58 (191)
T COG3150 2 ILYLHGFNSSPGSHKA------VLLLQ----FIDEDVRDIEYSTPHLPH-----------DPQQALKELEKAVQELGD-- 58 (191)
T ss_pred eEEEecCCCCcccHHH------HHHHH----HHhccccceeeecCCCCC-----------CHHHHHHHHHHHHHHcCC--
Confidence 7899997665444322 12222 344566777777764322 278899998888887773
Q ss_pred hhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeec
Q psy1220 152 RLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALAS 193 (337)
Q Consensus 152 ~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~ 193 (337)
....++|.|+||+.|.|++.++- ++++++.
T Consensus 59 ----------~~p~ivGssLGGY~At~l~~~~G--irav~~N 88 (191)
T COG3150 59 ----------ESPLIVGSSLGGYYATWLGFLCG--IRAVVFN 88 (191)
T ss_pred ----------CCceEEeecchHHHHHHHHHHhC--ChhhhcC
Confidence 34789999999999999999885 4554443
No 154
>KOG2624|consensus
Probab=97.04 E-value=0.0017 Score=62.33 Aligned_cols=120 Identities=16% Similarity=0.060 Sum_probs=83.7
Q ss_pred CCcEEEEeCCCCCccchhhh---hHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHH-HHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAEN---LGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQ-TLADFVDVI 144 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~---~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~-~~~D~~~~i 144 (337)
.+||++.||--.++..|-.+ .++.--|+ +.|+.|..-.-||---|..-...+..+....=.++.++ ...|+.+.|
T Consensus 73 rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~La-daGYDVWLgN~RGn~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~I 151 (403)
T KOG2624|consen 73 RPVVLLQHGLLASSSSWVLNGPEQSLAFLLA-DAGYDVWLGNNRGNTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMI 151 (403)
T ss_pred CCcEEEeeccccccccceecCccccHHHHHH-HcCCceeeecCcCcccchhhcccCCcCCcceeecchhhhhhcCHHHHH
Confidence 56788899999988888654 33333344 45999999999997666543222211000112356666 556999999
Q ss_pred HHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCC---ceeEeeecCccc
Q psy1220 145 QSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPH---IVQGALASSAPM 197 (337)
Q Consensus 145 ~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~---~v~~~v~~sap~ 197 (337)
+.+.+. . ...+++.+|||-|+.....+....|+ .|+.+++.++++
T Consensus 152 dyIL~~------T--~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~aLAP~~ 199 (403)
T KOG2624|consen 152 DYILEK------T--GQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIALAPAA 199 (403)
T ss_pred HHHHHh------c--cccceEEEEEEccchhheehhcccchhhhhhheeeeecchh
Confidence 999864 1 33799999999999999888888776 677777776554
No 155
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=96.96 E-value=0.0026 Score=52.74 Aligned_cols=38 Identities=21% Similarity=0.147 Sum_probs=29.7
Q ss_pred CCCCEEEEecchhHHHHHHHHHhCCC----ceeEeeecCccc
Q psy1220 160 KPHPVIAFGGSYGGMLAFWLRLKYPH----IVQGALASSAPM 197 (337)
Q Consensus 160 ~~~~~il~G~S~GG~la~~~~~~~P~----~v~~~v~~sap~ 197 (337)
+..+++++|||+||.+|..++..+++ ....++..++|.
T Consensus 26 p~~~i~v~GHSlGg~lA~l~a~~~~~~~~~~~~~~~~fg~p~ 67 (153)
T cd00741 26 PDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGPPR 67 (153)
T ss_pred CCCeEEEEEcCHHHHHHHHHHHHHHhccCCCceEEEEeCCCc
Confidence 44799999999999999999888765 456666665554
No 156
>KOG1282|consensus
Probab=96.95 E-value=0.015 Score=56.75 Aligned_cols=88 Identities=17% Similarity=0.120 Sum_probs=59.5
Q ss_pred CcEEEeccc-ccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhH----HH
Q psy1220 101 ARVVLVEHR-YYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGG----ML 175 (337)
Q Consensus 101 ~~vi~~D~r-g~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG----~l 175 (337)
+.++.+|.| |.|-|--..... .+ .+-+..++|.-.|+...-++ +|.....++.|.|-||+| .+
T Consensus 118 aNiLfLd~PvGvGFSYs~~~~~------~~-~~D~~~A~d~~~FL~~wf~k-----fPey~~~~fyI~GESYAG~YVP~L 185 (454)
T KOG1282|consen 118 ANILFLDQPVGVGFSYSNTSSD------YK-TGDDGTAKDNYEFLQKWFEK-----FPEYKSNDFYIAGESYAGHYVPAL 185 (454)
T ss_pred ccEEEEecCCcCCccccCCCCc------Cc-CCcHHHHHHHHHHHHHHHHh-----ChhhcCCCeEEecccccceehHHH
Confidence 579999999 788775432111 11 23466777888777766655 677777899999999999 56
Q ss_pred HHHHHHhC-----C-CceeEeeecCcccccc
Q psy1220 176 AFWLRLKY-----P-HIVQGALASSAPMFQT 200 (337)
Q Consensus 176 a~~~~~~~-----P-~~v~~~v~~sap~~~~ 200 (337)
|..+.... | =-++|+++..+-+...
T Consensus 186 a~~I~~~N~~~~~~~iNLkG~~IGNg~td~~ 216 (454)
T KOG1282|consen 186 AQEILKGNKKCCKPNINLKGYAIGNGLTDPE 216 (454)
T ss_pred HHHHHhccccccCCcccceEEEecCcccCcc
Confidence 66665543 2 2468888777655443
No 157
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=96.93 E-value=0.0016 Score=62.81 Aligned_cols=59 Identities=14% Similarity=0.255 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCC------ceeEeeecCcccccc
Q psy1220 133 VAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPH------IVQGALASSAPMFQT 200 (337)
Q Consensus 133 ~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~------~v~~~v~~sap~~~~ 200 (337)
.++....+...|+...+. ...|++|+||||||.++..+....+. .|++.|..++|....
T Consensus 99 ~~~~~~~lk~~ie~~~~~---------~~~kv~li~HSmGgl~~~~fl~~~~~~~W~~~~i~~~i~i~~p~~Gs 163 (389)
T PF02450_consen 99 RDEYFTKLKQLIEEAYKK---------NGKKVVLIAHSMGGLVARYFLQWMPQEEWKDKYIKRFISIGTPFGGS 163 (389)
T ss_pred HHHHHHHHHHHHHHHHHh---------cCCcEEEEEeCCCchHHHHHHHhccchhhHHhhhhEEEEeCCCCCCC
Confidence 456777788888887653 24799999999999999999988864 489999999887543
No 158
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=96.93 E-value=0.0023 Score=59.98 Aligned_cols=108 Identities=18% Similarity=0.125 Sum_probs=61.1
Q ss_pred CcEE-EEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccc--cccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHH
Q psy1220 70 APVF-FYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRY--YGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQS 146 (337)
Q Consensus 70 ~piv-l~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg--~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~ 146 (337)
-||| +=||.++....+.. ..+-..++|+.|..+||+| .|......... + .....-.-+-..|+..+++.
T Consensus 71 ~PlvvlshG~Gs~~~~f~~----~A~~lAs~Gf~Va~~~hpgs~~~~~~~~~~~~---~-~~~p~~~~erp~dis~lLd~ 142 (365)
T COG4188 71 LPLVVLSHGSGSYVTGFAW----LAEHLASYGFVVAAPDHPGSNAGGAPAAYAGP---G-SYAPAEWWERPLDISALLDA 142 (365)
T ss_pred CCeEEecCCCCCCccchhh----hHHHHhhCceEEEeccCCCcccccCChhhcCC---c-ccchhhhhcccccHHHHHHH
Confidence 4655 45887776444432 3443345689999999998 34443211000 0 00001122345677777777
Q ss_pred HHhhhhhhcc-CCCCCCCEEEEecchhHHHHHHHHHhCCC
Q psy1220 147 LEDASRLRIG-AAFKPHPVIAFGGSYGGMLAFWLRLKYPH 185 (337)
Q Consensus 147 l~~~~~~~~~-~~~~~~~~il~G~S~GG~la~~~~~~~P~ 185 (337)
|.+...--.+ ...+..++-++|||+||+.++..+.-..+
T Consensus 143 L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~ 182 (365)
T COG4188 143 LLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAELD 182 (365)
T ss_pred HHHhhcCcccccccCccceEEEecccccHHHHHhcccccc
Confidence 7653000000 01234699999999999999998766554
No 159
>PLN02633 palmitoyl protein thioesterase family protein
Probab=96.92 E-value=0.036 Score=51.11 Aligned_cols=110 Identities=13% Similarity=0.097 Sum_probs=72.3
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhc-CCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRF-SARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSL 147 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~-~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l 147 (337)
.-|+|+.||-+.++..-.. +-+.+++++. |.-+.+++. |.+.. .+ -..+..+.++.+.+-+...
T Consensus 25 ~~P~ViwHG~GD~c~~~g~--~~~~~l~~~~~g~~~~~i~i---g~~~~---~s-------~~~~~~~Qve~vce~l~~~ 89 (314)
T PLN02633 25 SVPFIMLHGIGTQCSDATN--ANFTQLLTNLSGSPGFCLEI---GNGVG---DS-------WLMPLTQQAEIACEKVKQM 89 (314)
T ss_pred CCCeEEecCCCcccCCchH--HHHHHHHHhCCCCceEEEEE---CCCcc---cc-------ceeCHHHHHHHHHHHHhhc
Confidence 4699999998887654321 2255555543 445555544 44311 11 1133555666666555554
Q ss_pred HhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCC--ceeEeeecCccccccCCC
Q psy1220 148 EDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPH--IVQGALASSAPMFQTNDL 203 (337)
Q Consensus 148 ~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~--~v~~~v~~sap~~~~~~~ 203 (337)
.+ + . .=++++|+|-||.++-.+.++.|+ .|+.+|..++|.....+.
T Consensus 90 ~~------l---~-~G~naIGfSQGGlflRa~ierc~~~p~V~nlISlggph~Gv~g~ 137 (314)
T PLN02633 90 KE------L---S-QGYNIVGRSQGNLVARGLIEFCDGGPPVYNYISLAGPHAGISSL 137 (314)
T ss_pred hh------h---h-CcEEEEEEccchHHHHHHHHHCCCCCCcceEEEecCCCCCeeCC
Confidence 32 2 1 359999999999999999999998 499999888898766543
No 160
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=96.90 E-value=0.0047 Score=61.59 Aligned_cols=114 Identities=18% Similarity=0.054 Sum_probs=62.8
Q ss_pred Cc-EEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEeccc----ccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHH
Q psy1220 70 AP-VFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHR----YYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVI 144 (337)
Q Consensus 70 ~p-ivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~r----g~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i 144 (337)
-| +|++|||+-....-.........++.+.+.-||.+..| ||-.+.-.... +-...+.|....+
T Consensus 125 lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~~~~~~~-----------~gN~Gl~Dq~~AL 193 (535)
T PF00135_consen 125 LPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGAFGFLSLGDLDAP-----------SGNYGLLDQRLAL 193 (535)
T ss_dssp EEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HHHHH-BSSSTTSH-----------BSTHHHHHHHHHH
T ss_pred cceEEEeecccccCCCcccccccccccccCCCEEEEEecccccccccccccccccC-----------chhhhhhhhHHHH
Confidence 45 57889987543222000111234556668899999999 44333211100 1233566777777
Q ss_pred HHHHhhhhhhccC--CCCCCCEEEEecchhHHHHHHHHHh--CCCceeEeeecCccccc
Q psy1220 145 QSLEDASRLRIGA--AFKPHPVIAFGGSYGGMLAFWLRLK--YPHIVQGALASSAPMFQ 199 (337)
Q Consensus 145 ~~l~~~~~~~~~~--~~~~~~~il~G~S~GG~la~~~~~~--~P~~v~~~v~~sap~~~ 199 (337)
+++++. +. +-+..+|+|+|||-||..+...... -..+++++|+.|+....
T Consensus 194 ~WV~~n-----I~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs~~~ 247 (535)
T PF00135_consen 194 KWVQDN-----IAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGSALS 247 (535)
T ss_dssp HHHHHH-----GGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--TTS
T ss_pred HHHHhh-----hhhcccCCcceeeeeecccccccceeeecccccccccccccccccccc
Confidence 777654 21 2233689999999999988777655 23589999988875443
No 161
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=96.90 E-value=0.005 Score=59.28 Aligned_cols=104 Identities=8% Similarity=-0.006 Sum_probs=74.3
Q ss_pred CcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHh
Q psy1220 70 APVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLED 149 (337)
Q Consensus 70 ~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~ 149 (337)
.||+++-.-.+..... ..+++..|.+ |+.|+..|+..-+.... .-+.++.++.++-+.+++++++
T Consensus 103 ~pvLiV~Pl~g~~~~L--~RS~V~~Ll~--g~dVYl~DW~~p~~vp~----------~~~~f~ldDYi~~l~~~i~~~G- 167 (406)
T TIGR01849 103 PAVLIVAPMSGHYATL--LRSTVEALLP--DHDVYITDWVNARMVPL----------SAGKFDLEDYIDYLIEFIRFLG- 167 (406)
T ss_pred CcEEEEcCCchHHHHH--HHHHHHHHhC--CCcEEEEeCCCCCCCch----------hcCCCCHHHHHHHHHHHHHHhC-
Confidence 4788877655443322 3455566655 78899999987764421 2245778999977777777665
Q ss_pred hhhhhccCCCCCCCEEEEecchhHHHHHHHHHhC-----CCceeEeeecCcccccc
Q psy1220 150 ASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKY-----PHIVQGALASSAPMFQT 200 (337)
Q Consensus 150 ~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~-----P~~v~~~v~~sap~~~~ 200 (337)
.+++++|.++||.+++.++..+ |+.++.+++..+|+...
T Consensus 168 ------------~~v~l~GvCqgG~~~laa~Al~a~~~~p~~~~sltlm~~PID~~ 211 (406)
T TIGR01849 168 ------------PDIHVIAVCQPAVPVLAAVALMAENEPPAQPRSMTLMGGPIDAR 211 (406)
T ss_pred ------------CCCcEEEEchhhHHHHHHHHHHHhcCCCCCcceEEEEecCccCC
Confidence 3499999999999966555444 77899999999998754
No 162
>COG0627 Predicted esterase [General function prediction only]
Probab=96.84 E-value=0.0027 Score=59.23 Aligned_cols=38 Identities=29% Similarity=0.223 Sum_probs=34.0
Q ss_pred CEEEEecchhHHHHHHHHHhCCCceeEeeecCcccccc
Q psy1220 163 PVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQT 200 (337)
Q Consensus 163 ~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~~~ 200 (337)
+-.++||||||.=|+.+|.++|+++..+...|+.+...
T Consensus 153 ~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s 190 (316)
T COG0627 153 GRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPS 190 (316)
T ss_pred CceeEEEeccchhhhhhhhhCcchhceecccccccccc
Confidence 68899999999999999999999999999888766554
No 163
>KOG3101|consensus
Probab=96.63 E-value=0.0036 Score=54.13 Aligned_cols=124 Identities=24% Similarity=0.275 Sum_probs=65.9
Q ss_pred CCcEEEEeCC-CCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccc-cC--CHHHHHH---HHH
Q psy1220 69 GAPVFFYCGN-EDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSG-YL--TVAQTLA---DFV 141 (337)
Q Consensus 69 ~~pivl~hGg-~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~-~~--t~~~~~~---D~~ 141 (337)
.-|++|+..| .-..+.+...+| +.+.|.++|..||.+|-.--|--..-++.|.+=..... |+ |.|.+.. -+.
T Consensus 43 ~~P~lf~LSGLTCT~~Nfi~Ksg-~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GAGFYvnAt~epw~~~yrMYd 121 (283)
T KOG3101|consen 43 RCPVLFYLSGLTCTHENFIEKSG-FQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGAGFYVNATQEPWAKHYRMYD 121 (283)
T ss_pred cCceEEEecCCcccchhhHhhhh-HHHhHhhcCeEEECCCCCCCccccCCCcccccccCCceeEEecccchHhhhhhHHH
Confidence 4576665544 445566666555 77888899999999986444432221111211000000 00 1111111 111
Q ss_pred HHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecC
Q psy1220 142 DVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASS 194 (337)
Q Consensus 142 ~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~s 194 (337)
-+.++|-+.-... ....+..++-++||||||.=|+..++|.|.+.+++-+..
T Consensus 122 Yv~kELp~~l~~~-~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFA 173 (283)
T KOG3101|consen 122 YVVKELPQLLNSA-NVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFA 173 (283)
T ss_pred HHHHHHHHHhccc-cccccchhcceeccccCCCceEEEEEcCcccccceeccc
Confidence 1222222110000 012233579999999999999999999999877766554
No 164
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=96.62 E-value=0.0073 Score=58.64 Aligned_cols=114 Identities=20% Similarity=0.139 Sum_probs=64.7
Q ss_pred CCc-EEEEeCCCCCcc----chhhhhHHHHHHHHhcCCcEEEecccc--cc---cCCCCCCCCCCCCcccccCCHHHHHH
Q psy1220 69 GAP-VFFYCGNEDAIE----TFAENLGFLWESAKRFSARVVLVEHRY--YG---SSLPFGPKSLSSPRLSGYLTVAQTLA 138 (337)
Q Consensus 69 ~~p-ivl~hGg~g~~~----~~~~~~~~~~~la~~~~~~vi~~D~rg--~G---~S~~~~~~s~~~~~~~~~~t~~~~~~ 138 (337)
+.| +|++|||.-... .+.. -..|+++-+.-||.+++|= +| .|.-..... ....--+.
T Consensus 93 ~~PVmV~IHGG~y~~Gs~s~~~yd----gs~La~~g~vVvVSvNYRLG~lGfL~~~~~~~~~~---------~~~n~Gl~ 159 (491)
T COG2272 93 KLPVMVYIHGGGYIMGSGSEPLYD----GSALAARGDVVVVSVNYRLGALGFLDLSSLDTEDA---------FASNLGLL 159 (491)
T ss_pred CCcEEEEEeccccccCCCcccccC----hHHHHhcCCEEEEEeCcccccceeeehhhcccccc---------ccccccHH
Confidence 445 688999864322 1222 3568887668889999981 12 111110011 10112455
Q ss_pred HHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHh--CCCceeEeeecCcccc
Q psy1220 139 DFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLK--YPHIVQGALASSAPMF 198 (337)
Q Consensus 139 D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~--~P~~v~~~v~~sap~~ 198 (337)
|....++++++. -..+ +-+...|.|+|+|-|++.++++..- ...+++++|+.|++..
T Consensus 160 DqilALkWV~~N--Ie~F-GGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 160 DQILALKWVRDN--IEAF-GGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAAS 218 (491)
T ss_pred HHHHHHHHHHHH--HHHh-CCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCCC
Confidence 555555555543 0002 2344789999999999988877643 3346778887776653
No 165
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=96.62 E-value=0.015 Score=55.16 Aligned_cols=121 Identities=16% Similarity=0.211 Sum_probs=65.1
Q ss_pred eeEEEEeCc-c-cCCCCCCcEEEEeCCCCCccchhhhhHHHHHHHHhc-CCcEEEecccccc---cCCCCCCCCCCCCcc
Q psy1220 54 PLKYLINDE-F-WDEDGGAPVFFYCGNEDAIETFAENLGFLWESAKRF-SARVVLVEHRYYG---SSLPFGPKSLSSPRL 127 (337)
Q Consensus 54 ~qry~~~~~-~-~~~~~~~pivl~hGg~g~~~~~~~~~~~~~~la~~~-~~~vi~~D~rg~G---~S~~~~~~s~~~~~~ 127 (337)
.|.||+... . .++.+...|+++|||+--......+-.++..+.+.+ ...++++|..-.. .+.+
T Consensus 105 ~~s~Wlvk~P~~~~pk~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~~~SILvLDYsLt~~~~~~~~----------- 173 (374)
T PF10340_consen 105 SQSYWLVKAPNRFKPKSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLPEVSILVLDYSLTSSDEHGHK----------- 173 (374)
T ss_pred cceEEEEeCCcccCCCCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcCCCeEEEEeccccccccCCCc-----------
Confidence 355776652 1 112113446788998865554444333344433332 2367777765332 1111
Q ss_pred cccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHh--CCC---ceeEeeecCcccc
Q psy1220 128 SGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLK--YPH---IVQGALASSAPMF 198 (337)
Q Consensus 128 ~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~--~P~---~v~~~v~~sap~~ 198 (337)
....+.++.+..++|.+. . ....++|+|-|-||.+++.+.+. .++ .-+++|+.|+=+.
T Consensus 174 -----yPtQL~qlv~~Y~~Lv~~-----~---G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~ 236 (374)
T PF10340_consen 174 -----YPTQLRQLVATYDYLVES-----E---GNKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVN 236 (374)
T ss_pred -----CchHHHHHHHHHHHHHhc-----c---CCCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcC
Confidence 112344445555555422 1 22689999999999999887643 211 1367887774343
No 166
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=96.60 E-value=0.0034 Score=62.31 Aligned_cols=83 Identities=18% Similarity=0.026 Sum_probs=64.7
Q ss_pred HhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHH
Q psy1220 97 KRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLA 176 (337)
Q Consensus 97 ~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la 176 (337)
...||.||..|.||.|.|+..-+ .+.. +-++|-.+.|+++..+ +.. +.++-.+|.||+|+..
T Consensus 77 aa~GYavV~qDvRG~~~SeG~~~----------~~~~-~E~~Dg~D~I~Wia~Q------pWs-NG~Vgm~G~SY~g~tq 138 (563)
T COG2936 77 AAQGYAVVNQDVRGRGGSEGVFD----------PESS-REAEDGYDTIEWLAKQ------PWS-NGNVGMLGLSYLGFTQ 138 (563)
T ss_pred ecCceEEEEecccccccCCcccc----------eecc-ccccchhHHHHHHHhC------Ccc-CCeeeeecccHHHHHH
Confidence 35689999999999999986322 1112 5678888999999865 333 3799999999999999
Q ss_pred HHHHHhCCCceeEeeecCccc
Q psy1220 177 FWLRLKYPHIVQGALASSAPM 197 (337)
Q Consensus 177 ~~~~~~~P~~v~~~v~~sap~ 197 (337)
.++|...|..+++++..++..
T Consensus 139 ~~~Aa~~pPaLkai~p~~~~~ 159 (563)
T COG2936 139 LAAAALQPPALKAIAPTEGLV 159 (563)
T ss_pred HHHHhcCCchheeeccccccc
Confidence 999998888888888655444
No 167
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=96.58 E-value=0.018 Score=48.55 Aligned_cols=54 Identities=20% Similarity=0.228 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcccc
Q psy1220 132 TVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMF 198 (337)
Q Consensus 132 t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~ 198 (337)
..+++++-+..-+.... .++++|+||+|+.+++.++.+.-..|.|+++.+.|-.
T Consensus 42 ~~~dWi~~l~~~v~a~~-------------~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~ 95 (181)
T COG3545 42 VLDDWIARLEKEVNAAE-------------GPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDV 95 (181)
T ss_pred CHHHHHHHHHHHHhccC-------------CCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCc
Confidence 36677666655554432 6799999999999999999887779999999887643
No 168
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=96.55 E-value=0.0068 Score=51.66 Aligned_cols=59 Identities=12% Similarity=0.098 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcccc
Q psy1220 133 VAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMF 198 (337)
Q Consensus 133 ~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~ 198 (337)
.+....++..|++.|... ..+..+..++|||||+.++...++..+..++.+|+..+|-.
T Consensus 87 A~~ga~~L~~f~~gl~a~-------~~~~~~~tv~GHSYGS~v~G~A~~~~~~~vddvv~~GSPG~ 145 (177)
T PF06259_consen 87 ARAGAPRLARFLDGLRAT-------HGPDAHLTVVGHSYGSTVVGLAAQQGGLRVDDVVLVGSPGM 145 (177)
T ss_pred HHHHHHHHHHHHHHhhhh-------cCCCCCEEEEEecchhHHHHHHhhhCCCCcccEEEECCCCC
Confidence 677788999999999864 13457899999999999999998887888999997776743
No 169
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=96.52 E-value=0.011 Score=56.31 Aligned_cols=110 Identities=11% Similarity=0.093 Sum_probs=79.3
Q ss_pred CCcEEEEeCCCCCccchh--hhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHH-HHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFA--ENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTL-ADFVDVIQ 145 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~--~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~-~D~~~~i~ 145 (337)
+.|++++|-.--...-+. .+.+++ .++-+.|..|+.++.|+=.++.. ..+.++.+ +++.+.++
T Consensus 107 ~~PlLiVpP~iNk~yi~Dl~~~~s~V-~~l~~~g~~vfvIsw~nPd~~~~-------------~~~~edYi~e~l~~aid 172 (445)
T COG3243 107 KRPLLIVPPWINKFYILDLSPEKSLV-RWLLEQGLDVFVISWRNPDASLA-------------AKNLEDYILEGLSEAID 172 (445)
T ss_pred CCceEeeccccCceeEEeCCCCccHH-HHHHHcCCceEEEeccCchHhhh-------------hccHHHHHHHHHHHHHH
Confidence 578999998544322221 233433 34445588999999998666553 24577777 77777777
Q ss_pred HHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCc-eeEeeecCcccccc
Q psy1220 146 SLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHI-VQGALASSAPMFQT 200 (337)
Q Consensus 146 ~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~-v~~~v~~sap~~~~ 200 (337)
.+++. - ..+++.++|++.||++++.++..+|.. |+.+++..+|+...
T Consensus 173 ~v~~i-----t---g~~~InliGyCvGGtl~~~ala~~~~k~I~S~T~lts~~DF~ 220 (445)
T COG3243 173 TVKDI-----T---GQKDINLIGYCVGGTLLAAALALMAAKRIKSLTLLTSPVDFS 220 (445)
T ss_pred HHHHH-----h---CccccceeeEecchHHHHHHHHhhhhcccccceeeecchhhc
Confidence 77753 1 236899999999999999999999988 99999888887543
No 170
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=96.51 E-value=0.0052 Score=49.82 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=19.7
Q ss_pred CCCEEEEecchhHHHHHHHHHhC
Q psy1220 161 PHPVIAFGGSYGGMLAFWLRLKY 183 (337)
Q Consensus 161 ~~~~il~G~S~GG~la~~~~~~~ 183 (337)
+.++++.|||+||.+|..++...
T Consensus 63 ~~~i~itGHSLGGalA~l~a~~l 85 (140)
T PF01764_consen 63 DYSIVITGHSLGGALASLAAADL 85 (140)
T ss_dssp TSEEEEEEETHHHHHHHHHHHHH
T ss_pred CccchhhccchHHHHHHHHHHhh
Confidence 36899999999999998887653
No 171
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=96.48 E-value=0.0055 Score=53.98 Aligned_cols=54 Identities=24% Similarity=0.340 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCccccc
Q psy1220 139 DFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQ 199 (337)
Q Consensus 139 D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~~ 199 (337)
-+.+.+++|+++ +..+..++.|+|.|.||-+|+.++.++| .|+++|+.+++...
T Consensus 5 yfe~Ai~~L~~~------p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~ 58 (213)
T PF08840_consen 5 YFEEAIDWLKSH------PEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVV 58 (213)
T ss_dssp HHHHHHHHHHCS------TTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB-
T ss_pred HHHHHHHHHHhC------CCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeE
Confidence 345566677654 3334579999999999999999999999 69999977655433
No 172
>PLN02606 palmitoyl-protein thioesterase
Probab=96.46 E-value=0.096 Score=48.28 Aligned_cols=110 Identities=15% Similarity=0.070 Sum_probs=68.7
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhc-CCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRF-SARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSL 147 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~-~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l 147 (337)
.-|||+.||-+.++..-.. +-+.+++++. +.-+..+. .|-|.. .|+ ..+..+.++.+.+-+...
T Consensus 26 ~~PvViwHGlgD~~~~~~~--~~~~~~i~~~~~~pg~~v~-ig~~~~-----~s~-------~~~~~~Qv~~vce~l~~~ 90 (306)
T PLN02606 26 SVPFVLFHGFGGECSNGKV--SNLTQFLINHSGYPGTCVE-IGNGVQ-----DSL-------FMPLRQQASIACEKIKQM 90 (306)
T ss_pred CCCEEEECCCCcccCCchH--HHHHHHHHhCCCCCeEEEE-ECCCcc-----ccc-------ccCHHHHHHHHHHHHhcc
Confidence 3699999998865433211 1245555533 54444444 221110 011 123555666665555553
Q ss_pred HhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCC--ceeEeeecCccccccCCC
Q psy1220 148 EDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPH--IVQGALASSAPMFQTNDL 203 (337)
Q Consensus 148 ~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~--~v~~~v~~sap~~~~~~~ 203 (337)
.+ + . .=+.++|+|=||.++-.+.++.|+ .|+-+|..++|.....+.
T Consensus 91 ~~------L---~-~G~naIGfSQGglflRa~ierc~~~p~V~nlISlggph~Gv~g~ 138 (306)
T PLN02606 91 KE------L---S-EGYNIVAESQGNLVARGLIEFCDNAPPVINYVSLGGPHAGVAAI 138 (306)
T ss_pred hh------h---c-CceEEEEEcchhHHHHHHHHHCCCCCCcceEEEecCCcCCcccC
Confidence 32 1 1 359999999999999999999998 499999998898776543
No 173
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=96.38 E-value=0.009 Score=53.02 Aligned_cols=52 Identities=21% Similarity=0.121 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhC-----CCceeEeeecC
Q psy1220 135 QTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKY-----PHIVQGALASS 194 (337)
Q Consensus 135 ~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~-----P~~v~~~v~~s 194 (337)
...+++...++.+.++ . +..++++.|||+||.+|..++... +..+..+...+
T Consensus 109 ~~~~~~~~~~~~~~~~-----~---p~~~i~vtGHSLGGaiA~l~a~~l~~~~~~~~i~~~tFg~ 165 (229)
T cd00519 109 SLYNQVLPELKSALKQ-----Y---PDYKIIVTGHSLGGALASLLALDLRLRGPGSDVTVYTFGQ 165 (229)
T ss_pred HHHHHHHHHHHHHHhh-----C---CCceEEEEccCHHHHHHHHHHHHHHhhCCCCceEEEEeCC
Confidence 3444555555555433 2 447899999999999998877643 33455444444
No 174
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=96.31 E-value=0.035 Score=49.30 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhC----CCceeEeeecCccccc
Q psy1220 139 DFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKY----PHIVQGALASSAPMFQ 199 (337)
Q Consensus 139 D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~----P~~v~~~v~~sap~~~ 199 (337)
...++++.+..+ + + .++++.|||.||.+|+..+... .++|..++...+|-..
T Consensus 70 ~A~~yl~~~~~~-----~---~-~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDgPGf~ 125 (224)
T PF11187_consen 70 SALAYLKKIAKK-----Y---P-GKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDGPGFS 125 (224)
T ss_pred HHHHHHHHHHHh-----C---C-CCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeCCCCC
Confidence 444555555543 3 2 4699999999999999999874 4578888888888543
No 175
>KOG2112|consensus
Probab=96.25 E-value=0.02 Score=49.59 Aligned_cols=117 Identities=21% Similarity=0.198 Sum_probs=65.8
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccC--------CCCCCCCCCCCcccccCCHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSS--------LPFGPKSLSSPRLSGYLTVAQTLADF 140 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S--------~~~~~~s~~~~~~~~~~t~~~~~~D~ 140 (337)
...||++||.+.+...|.. ++.. ....+..-|++-.+..=-+ .-++.......-....-...++.+-+
T Consensus 3 ~atIi~LHglGDsg~~~~~---~~~~-l~l~NiKwIcP~aP~rpvt~~~G~~~~aWfd~~~~~~~~~~d~~~~~~aa~~i 78 (206)
T KOG2112|consen 3 TATIIFLHGLGDSGSGWAQ---FLKQ-LPLPNIKWICPTAPSRPVTLNGGAFMNAWFDIMELSSDAPEDEEGLHRAADNI 78 (206)
T ss_pred eEEEEEEecCCCCCccHHH---HHHc-CCCCCeeEEcCCCCCCcccccCCCcccceecceeeCcccchhhhHHHHHHHHH
Confidence 3579999998877666632 2333 2223445666533321111 00110000000000112244455555
Q ss_pred HHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcc
Q psy1220 141 VDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAP 196 (337)
Q Consensus 141 ~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap 196 (337)
+.+++..-.. +.+..++++-|-|+||++|+..+..||..+.+....++-
T Consensus 79 ~~Li~~e~~~-------Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~ 127 (206)
T KOG2112|consen 79 ANLIDNEPAN-------GIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGF 127 (206)
T ss_pred HHHHHHHHHc-------CCCccceeEcccCchHHHHHHHHhccccccceeeccccc
Confidence 5565555432 334578999999999999999999999988888866543
No 176
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=96.23 E-value=0.0097 Score=57.94 Aligned_cols=111 Identities=18% Similarity=0.191 Sum_probs=67.5
Q ss_pred CCc-EEEEeCCCCCccchhhhhHHHHHHHH------------------hcCCcEEEeccc-ccccCCCCCCCCCCCCccc
Q psy1220 69 GAP-VFFYCGNEDAIETFAENLGFLWESAK------------------RFSARVVLVEHR-YYGSSLPFGPKSLSSPRLS 128 (337)
Q Consensus 69 ~~p-ivl~hGg~g~~~~~~~~~~~~~~la~------------------~~~~~vi~~D~r-g~G~S~~~~~~s~~~~~~~ 128 (337)
+.| ||.+.||+|..+.+.. +.++-. --.+.+|++|+| |.|-|...++.
T Consensus 100 ~rPvi~wlNGGPGcSS~~g~----l~elGP~rI~~~~~P~~~~NP~SW~~~adLvFiDqPvGTGfS~a~~~e-------- 167 (498)
T COG2939 100 NRPVIFWLNGGPGCSSVTGL----LGELGPKRIQSGTSPSYPDNPGSWLDFADLVFIDQPVGTGFSRALGDE-------- 167 (498)
T ss_pred CCceEEEecCCCChHhhhhh----hhhcCCeeeeCCCCCCCCCCccccccCCceEEEecCcccCcccccccc--------
Confidence 355 6789999998765542 211110 012479999966 88888752221
Q ss_pred ccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCC--CCEEEEecchhHHHHHHHHHhCCC---ceeEeeecCcc
Q psy1220 129 GYLTVAQTLADFVDVIQSLEDASRLRIGAAFKP--HPVIAFGGSYGGMLAFWLRLKYPH---IVQGALASSAP 196 (337)
Q Consensus 129 ~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~--~~~il~G~S~GG~la~~~~~~~P~---~v~~~v~~sap 196 (337)
+..+...+-+|+..+.+.+.+. ++...+ .|++|+|-||||.-+..+|..--+ ...+.+..++.
T Consensus 168 ~~~d~~~~~~D~~~~~~~f~~~-----fp~~~r~~~~~~L~GESYgg~yip~~A~~L~~~~~~~~~~~nlssv 235 (498)
T COG2939 168 KKKDFEGAGKDVYSFLRLFFDK-----FPHYARLLSPKFLAGESYGGHYIPVFAHELLEDNIALNGNVNLSSV 235 (498)
T ss_pred cccchhccchhHHHHHHHHHHH-----HHHHhhhcCceeEeeccccchhhHHHHHHHHHhccccCCceEeeee
Confidence 1233566677777777766554 322222 499999999999988877754333 34555544433
No 177
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=96.22 E-value=0.03 Score=49.15 Aligned_cols=116 Identities=19% Similarity=0.080 Sum_probs=53.8
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccC------------------CCCCCCCCCCCccccc
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSS------------------LPFGPKSLSSPRLSGY 130 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S------------------~~~~~~s~~~~~~~~~ 130 (337)
+.-|+++||...+...+....+-+....++.++..+++|=+.--.. .+.-.......+...+
T Consensus 4 k~riLcLHG~~~na~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~ 83 (212)
T PF03959_consen 4 KPRILCLHGYGQNAEIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDDHEY 83 (212)
T ss_dssp --EEEEE--TT--HHHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-SGGG
T ss_pred CceEEEeCCCCcCHHHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCcccc
Confidence 3469999999999888877665555533333567888876643210 0100000000001123
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCC-EEEEecchhHHHHHHHHHhC--------CCceeEeeecCcccc
Q psy1220 131 LTVAQTLADFVDVIQSLEDASRLRIGAAFKPHP-VIAFGGSYGGMLAFWLRLKY--------PHIVQGALASSAPMF 198 (337)
Q Consensus 131 ~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~-~il~G~S~GG~la~~~~~~~--------P~~v~~~v~~sap~~ 198 (337)
...+++++.+.+.++..+ | .-|+|.|-||.+|+.++... ...++-+|+.|+...
T Consensus 84 ~~~~~sl~~l~~~i~~~G--------------PfdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p 146 (212)
T PF03959_consen 84 EGLDESLDYLRDYIEENG--------------PFDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPP 146 (212)
T ss_dssp ---HHHHHHHHHHHHHH-----------------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----
T ss_pred cCHHHHHHHHHHHHHhcC--------------CeEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCC
Confidence 445555555555555433 4 45999999999999888542 123677777665543
No 178
>KOG2541|consensus
Probab=96.20 E-value=0.17 Score=45.56 Aligned_cols=107 Identities=15% Similarity=0.107 Sum_probs=69.0
Q ss_pred CcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccc--cCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHH
Q psy1220 70 APVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYG--SSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSL 147 (337)
Q Consensus 70 ~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G--~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l 147 (337)
.|+|++||-+..+.... .+.+...+.+--|.-|.++|. |-| .|.- ....+.++-+.+.+..+
T Consensus 24 ~P~ii~HGigd~c~~~~-~~~~~q~l~~~~g~~v~~lei-g~g~~~s~l--------------~pl~~Qv~~~ce~v~~m 87 (296)
T KOG2541|consen 24 VPVIVWHGIGDSCSSLS-MANLTQLLEELPGSPVYCLEI-GDGIKDSSL--------------MPLWEQVDVACEKVKQM 87 (296)
T ss_pred CCEEEEeccCcccccch-HHHHHHHHHhCCCCeeEEEEe-cCCcchhhh--------------ccHHHHHHHHHHHHhcc
Confidence 69999999988877632 223333344444557888876 434 2211 12444444444444433
Q ss_pred HhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCC-ceeEeeecCccccccCC
Q psy1220 148 EDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPH-IVQGALASSAPMFQTND 202 (337)
Q Consensus 148 ~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~-~v~~~v~~sap~~~~~~ 202 (337)
.+ + ..=++++|-|-||.++-.+++.-|+ -|+..|..++|.....+
T Consensus 88 ~~------l----sqGynivg~SQGglv~Raliq~cd~ppV~n~ISL~gPhaG~~~ 133 (296)
T KOG2541|consen 88 PE------L----SQGYNIVGYSQGGLVARALIQFCDNPPVKNFISLGGPHAGIYG 133 (296)
T ss_pred hh------c----cCceEEEEEccccHHHHHHHHhCCCCCcceeEeccCCcCCccC
Confidence 32 1 1469999999999999999988765 48889988888766654
No 179
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=96.16 E-value=0.018 Score=52.47 Aligned_cols=114 Identities=17% Similarity=0.115 Sum_probs=56.6
Q ss_pred CCcEEEEeCCCCCcc-chhhhhHHHHHHHHh-c-CCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIE-TFAENLGFLWESAKR-F-SARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQ 145 (337)
Q Consensus 69 ~~pivl~hGg~g~~~-~~~~~~~~~~~la~~-~-~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~ 145 (337)
..|||+.||-+.++. .... +.+.++.++ + |.-|..++. |-|.+.-. ++--..++...++.+.+.+.
T Consensus 5 ~~PvViwHGmGD~~~~~~~m--~~i~~~i~~~~PG~yV~si~i-g~~~~~D~--------~~s~f~~v~~Qv~~vc~~l~ 73 (279)
T PF02089_consen 5 PLPVVIWHGMGDSCCNPSSM--GSIKELIEEQHPGTYVHSIEI-GNDPSEDV--------ENSFFGNVNDQVEQVCEQLA 73 (279)
T ss_dssp S--EEEE--TT--S--TTTH--HHHHHHHHHHSTT--EEE--S-SSSHHHHH--------HHHHHSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCccccCChhHH--HHHHHHHHHhCCCceEEEEEE-CCCcchhh--------hhhHHHHHHHHHHHHHHHHh
Confidence 579999999877643 2111 235565554 2 334555544 21111000 00011334555555555555
Q ss_pred HHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCC-ceeEeeecCccccccCCC
Q psy1220 146 SLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPH-IVQGALASSAPMFQTNDL 203 (337)
Q Consensus 146 ~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~-~v~~~v~~sap~~~~~~~ 203 (337)
...+ + . .=++++|+|=||.++-.+++++|+ .|+-+|..++|.....+.
T Consensus 74 ~~p~------L---~-~G~~~IGfSQGgl~lRa~vq~c~~~~V~nlISlggph~Gv~g~ 122 (279)
T PF02089_consen 74 NDPE------L---A-NGFNAIGFSQGGLFLRAYVQRCNDPPVHNLISLGGPHMGVFGL 122 (279)
T ss_dssp H-GG------G---T-T-EEEEEETCHHHHHHHHHHH-TSS-EEEEEEES--TT-BSS-
T ss_pred hChh------h---h-cceeeeeeccccHHHHHHHHHCCCCCceeEEEecCcccccccC
Confidence 4332 1 1 469999999999999999999986 599999888898766543
No 180
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=96.15 E-value=0.044 Score=50.63 Aligned_cols=89 Identities=25% Similarity=0.251 Sum_probs=52.7
Q ss_pred HHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecc
Q psy1220 91 FLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGS 170 (337)
Q Consensus 91 ~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S 170 (337)
++..+. ..|+.|+++|+.|.|. ++.. ..+.-..+-|.....+.+... .....+.+|.++|+|
T Consensus 18 ~l~~~L-~~GyaVv~pDY~Glg~--~y~~----------~~~~a~avLD~vRAA~~~~~~-----~gl~~~~~v~l~GyS 79 (290)
T PF03583_consen 18 FLAAWL-ARGYAVVAPDYEGLGT--PYLN----------GRSEAYAVLDAVRAARNLPPK-----LGLSPSSRVALWGYS 79 (290)
T ss_pred HHHHHH-HCCCEEEecCCCCCCC--cccC----------cHhHHHHHHHHHHHHHhcccc-----cCCCCCCCEEEEeeC
Confidence 444454 4599999999999988 3211 111223333433333333321 001134699999999
Q ss_pred hhHHHHHHHHHh----CCCc---eeEeeecCccc
Q psy1220 171 YGGMLAFWLRLK----YPHI---VQGALASSAPM 197 (337)
Q Consensus 171 ~GG~la~~~~~~----~P~~---v~~~v~~sap~ 197 (337)
=||.-++|.+.. -||+ +.|+++.+.|.
T Consensus 80 qGG~Aa~~AA~l~~~YApeL~~~l~Gaa~gg~~~ 113 (290)
T PF03583_consen 80 QGGQAALWAAELAPSYAPELNRDLVGAAAGGPPA 113 (290)
T ss_pred ccHHHHHHHHHHhHHhCcccccceeEEeccCCcc
Confidence 999998887643 3555 56666665554
No 181
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=95.98 E-value=0.17 Score=45.12 Aligned_cols=120 Identities=14% Similarity=0.080 Sum_probs=59.9
Q ss_pred eeEEEEeCcccCCCCCCc-EEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEeccccc-ccCCCCCCCCCCCCcccccC
Q psy1220 54 PLKYLINDEFWDEDGGAP-VFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYY-GSSLPFGPKSLSSPRLSGYL 131 (337)
Q Consensus 54 ~qry~~~~~~~~~~~~~p-ivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~-G~S~~~~~~s~~~~~~~~~~ 131 (337)
..+.|....-.+.++..+ |++--|.......+. | +..+....|++|+.+|+-.| |.|+. ....+
T Consensus 14 ~I~vwet~P~~~~~~~~~tiliA~Gf~rrmdh~a---g-LA~YL~~NGFhViRyDsl~HvGlSsG----------~I~ef 79 (294)
T PF02273_consen 14 QIRVWETRPKNNEPKRNNTILIAPGFARRMDHFA---G-LAEYLSANGFHVIRYDSLNHVGLSSG----------DINEF 79 (294)
T ss_dssp EEEEEEE---TTS---S-EEEEE-TT-GGGGGGH---H-HHHHHHTTT--EEEE---B----------------------
T ss_pred EEEEeccCCCCCCcccCCeEEEecchhHHHHHHH---H-HHHHHhhCCeEEEeccccccccCCCC----------Chhhc
Confidence 456665543222222334 555555333333332 2 44444456899999999877 88876 45668
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcccc
Q psy1220 132 TVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMF 198 (337)
Q Consensus 132 t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~ 198 (337)
|.+...+|+..++++++.. +..++-++.-|..|-+|...+.+- + +.-+|..-+.+.
T Consensus 80 tms~g~~sL~~V~dwl~~~---------g~~~~GLIAaSLSaRIAy~Va~~i-~-lsfLitaVGVVn 135 (294)
T PF02273_consen 80 TMSIGKASLLTVIDWLATR---------GIRRIGLIAASLSARIAYEVAADI-N-LSFLITAVGVVN 135 (294)
T ss_dssp -HHHHHHHHHHHHHHHHHT---------T---EEEEEETTHHHHHHHHTTTS----SEEEEES--S-
T ss_pred chHHhHHHHHHHHHHHHhc---------CCCcchhhhhhhhHHHHHHHhhcc-C-cceEEEEeeeee
Confidence 8999999999999999964 236799999999999999999844 3 566665555553
No 182
>KOG3967|consensus
Probab=95.92 E-value=0.081 Score=46.01 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=29.8
Q ss_pred CCEEEEecchhHHHHHHHHHhCCC--ceeEeeecCccc
Q psy1220 162 HPVIAFGGSYGGMLAFWLRLKYPH--IVQGALASSAPM 197 (337)
Q Consensus 162 ~~~il~G~S~GG~la~~~~~~~P~--~v~~~v~~sap~ 197 (337)
..+.++.|||||.+.+.+..++|+ .|.++.+..+++
T Consensus 190 ~sv~vvahsyGG~~t~~l~~~f~~d~~v~aialTDs~~ 227 (297)
T KOG3967|consen 190 ESVFVVAHSYGGSLTLDLVERFPDDESVFAIALTDSAM 227 (297)
T ss_pred ceEEEEEeccCChhHHHHHHhcCCccceEEEEeecccc
Confidence 689999999999999999999996 466666666554
No 183
>KOG3847|consensus
Probab=95.75 E-value=0.035 Score=50.96 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=26.9
Q ss_pred CCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcc
Q psy1220 161 PHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAP 196 (337)
Q Consensus 161 ~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap 196 (337)
..+++|+|||+||+.++.....+-+ ++.+|+..+=
T Consensus 240 ~s~~aViGHSFGgAT~i~~ss~~t~-FrcaI~lD~W 274 (399)
T KOG3847|consen 240 TSQAAVIGHSFGGATSIASSSSHTD-FRCAIALDAW 274 (399)
T ss_pred hhhhhheeccccchhhhhhhccccc-eeeeeeeeee
Confidence 3578999999999999988877654 6666655543
No 184
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=95.73 E-value=0.034 Score=52.08 Aligned_cols=86 Identities=17% Similarity=0.235 Sum_probs=57.3
Q ss_pred CcEEEeccc-ccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHH
Q psy1220 101 ARVVLVEHR-YYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWL 179 (337)
Q Consensus 101 ~~vi~~D~r-g~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~ 179 (337)
+.|+.+|+| |.|-|....+.. +.+-++.++|+..+++.+-.+ ++...+.+++|.|-||||.-.-.+
T Consensus 2 aNvLfiDqPvGvGfSy~~~~~~--------~~~d~~~a~d~~~fL~~Ff~~-----~p~~~~~~fyI~GESYaG~YiP~l 68 (319)
T PLN02213 2 ANIIFLDQPVGSGFSYSKTPID--------KTGDISEVKRTHEFLQKWLSR-----HPQYFSNPLYVVGDSYSGMIVPAL 68 (319)
T ss_pred ccEEEecCCCCCCCCCCCCCCC--------ccccHHHHHHHHHHHHHHHHh-----CcccccCCeEEEeeccccchHHHH
Confidence 359999999 899886432111 112234448988888887665 666677899999999999754444
Q ss_pred HH----hC------CCceeEeeecCccccc
Q psy1220 180 RL----KY------PHIVQGALASSAPMFQ 199 (337)
Q Consensus 180 ~~----~~------P~~v~~~v~~sap~~~ 199 (337)
+. .. +=.++|+++..+-+.+
T Consensus 69 a~~I~~~n~~~~~~~inLkGi~IGNg~t~~ 98 (319)
T PLN02213 69 VQEISQGNYICCEPPINLQGYMLGNPVTYM 98 (319)
T ss_pred HHHHHhhcccccCCceeeeEEEeCCCCCCc
Confidence 43 22 1146788887765543
No 185
>KOG4840|consensus
Probab=95.71 E-value=0.042 Score=48.10 Aligned_cols=100 Identities=13% Similarity=0.107 Sum_probs=66.2
Q ss_pred CcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEeccc----ccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHH
Q psy1220 70 APVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHR----YYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQ 145 (337)
Q Consensus 70 ~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~r----g~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~ 145 (337)
...|++.||-|+.-.-......+.....+.++.+|.+-.| |||. .+..+-++|+..+++
T Consensus 36 ~~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt-----------------~slk~D~edl~~l~~ 98 (299)
T KOG4840|consen 36 SVKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGT-----------------FSLKDDVEDLKCLLE 98 (299)
T ss_pred EEEEEEEcccCCCccccccHHHHHHHHhhccceeeeeecccccccccc-----------------ccccccHHHHHHHHH
Confidence 4567888888775433222222333445667888888776 3443 346778899999999
Q ss_pred HHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHH--HhCCCceeEeeecC
Q psy1220 146 SLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLR--LKYPHIVQGALASS 194 (337)
Q Consensus 146 ~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~--~~~P~~v~~~v~~s 194 (337)
++... -....++++|||-|.-=.+.+. ..-|..+.++|+-.
T Consensus 99 Hi~~~--------~fSt~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqA 141 (299)
T KOG4840|consen 99 HIQLC--------GFSTDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQA 141 (299)
T ss_pred Hhhcc--------CcccceEEEecCccchHHHHHHHhccchHHHHHHHHhC
Confidence 88743 1225899999999998777776 23566666666554
No 186
>PLN02454 triacylglycerol lipase
Probab=95.40 E-value=0.059 Score=51.81 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHh
Q psy1220 135 QTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLK 182 (337)
Q Consensus 135 ~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~ 182 (337)
.+.+++...++.+.++ ++. ...++++.|||+||+||...+..
T Consensus 207 S~r~qvl~~V~~l~~~-----Yp~-~~~sI~vTGHSLGGALAtLaA~d 248 (414)
T PLN02454 207 SARSQLLAKIKELLER-----YKD-EKLSIVLTGHSLGASLATLAAFD 248 (414)
T ss_pred HHHHHHHHHHHHHHHh-----CCC-CCceEEEEecCHHHHHHHHHHHH
Confidence 4556666667776655 421 11259999999999999998854
No 187
>PLN02310 triacylglycerol lipase
Probab=95.30 E-value=0.041 Score=52.78 Aligned_cols=57 Identities=18% Similarity=0.272 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHh----CCCceeEeeecCcccc
Q psy1220 134 AQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLK----YPHIVQGALASSAPMF 198 (337)
Q Consensus 134 ~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~----~P~~v~~~v~~sap~~ 198 (337)
+|.++.+..+++....+ .+..++++.|||+||+||...+.. .|..--.++...+|..
T Consensus 189 ~qVl~eV~~L~~~y~~~--------~e~~sI~vTGHSLGGALAtLaA~dl~~~~~~~~v~vyTFGsPRV 249 (405)
T PLN02310 189 EQVMQEVKRLVNFYRGK--------GEEVSLTVTGHSLGGALALLNAYEAATTIPDLFVSVISFGAPRV 249 (405)
T ss_pred HHHHHHHHHHHHhhccc--------CCcceEEEEcccHHHHHHHHHHHHHHHhCcCcceeEEEecCCCc
Confidence 45555655555544311 123589999999999999887742 4544334566666643
No 188
>KOG3975|consensus
Probab=95.23 E-value=0.25 Score=44.09 Aligned_cols=123 Identities=14% Similarity=0.104 Sum_probs=72.1
Q ss_pred EeeEEEEeCcccCCCCCCc-EEEEeCCCCCccchhhhhHHHHHHHHhcC--CcEEEecccccccCCCC-CCCCCCCCccc
Q psy1220 53 FPLKYLINDEFWDEDGGAP-VFFYCGNEDAIETFAENLGFLWESAKRFS--ARVVLVEHRYYGSSLPF-GPKSLSSPRLS 128 (337)
Q Consensus 53 f~qry~~~~~~~~~~~~~p-ivl~hGg~g~~~~~~~~~~~~~~la~~~~--~~vi~~D~rg~G~S~~~-~~~s~~~~~~~ 128 (337)
+...+|+.... ..++ |+.+-|++|...-|.+ |...|-..++ ..+..+-|-||-.-... .+... ..+-
T Consensus 16 ~~~~~~v~~~~----~~~~li~~IpGNPG~~gFY~~---F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s--~~~~ 86 (301)
T KOG3975|consen 16 LTLKPWVTKSG----EDKPLIVWIPGNPGLLGFYTE---FARHLHLNLIDRLPVWTISHAGHALMPASLREDHS--HTNE 86 (301)
T ss_pred eeeeeeeccCC----CCceEEEEecCCCCchhHHHH---HHHHHHHhcccccceeEEeccccccCCcccccccc--cccc
Confidence 44556665432 2345 5677888887655544 4455555554 24788888887653210 01110 1123
Q ss_pred ccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHh-CC-CceeEeeecC
Q psy1220 129 GYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLK-YP-HIVQGALASS 194 (337)
Q Consensus 129 ~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~-~P-~~v~~~v~~s 194 (337)
.-++.+..++-=.+|++... +.+.|++++|||-|+++.+.+... -+ -.|..+++.-
T Consensus 87 eifsL~~QV~HKlaFik~~~----------Pk~~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LF 144 (301)
T KOG3975|consen 87 EIFSLQDQVDHKLAFIKEYV----------PKDRKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLF 144 (301)
T ss_pred cccchhhHHHHHHHHHHHhC----------CCCCEEEEEecchhHHHHHHHhhhcccccceEEEEEec
Confidence 45667766666566655433 244799999999999999988752 22 2466666443
No 189
>KOG2369|consensus
Probab=95.18 E-value=0.02 Score=55.33 Aligned_cols=59 Identities=15% Similarity=0.233 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCC--------ceeEeeecCccccc
Q psy1220 133 VAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPH--------IVQGALASSAPMFQ 199 (337)
Q Consensus 133 ~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~--------~v~~~v~~sap~~~ 199 (337)
.++.+..++..|+..-+. . ..+|++|++|||||.+...|...+++ .|++.+..++|...
T Consensus 161 rd~yl~kLK~~iE~~~~~-----~---G~kkVvlisHSMG~l~~lyFl~w~~~~~~~W~~k~I~sfvnig~p~lG 227 (473)
T KOG2369|consen 161 RDQYLSKLKKKIETMYKL-----N---GGKKVVLISHSMGGLYVLYFLKWVEAEGPAWCDKYIKSFVNIGAPWLG 227 (473)
T ss_pred HHHHHHHHHHHHHHHHHH-----c---CCCceEEEecCCccHHHHHHHhcccccchhHHHHHHHHHHccCchhcC
Confidence 577888888888887754 1 33799999999999999999999988 35666666666543
No 190
>PLN02162 triacylglycerol lipase
Probab=95.03 E-value=0.071 Score=51.82 Aligned_cols=40 Identities=25% Similarity=0.223 Sum_probs=27.6
Q ss_pred CCCCEEEEecchhHHHHHHHHH---hC-----CCceeEeeecCccccc
Q psy1220 160 KPHPVIAFGGSYGGMLAFWLRL---KY-----PHIVQGALASSAPMFQ 199 (337)
Q Consensus 160 ~~~~~il~G~S~GG~la~~~~~---~~-----P~~v~~~v~~sap~~~ 199 (337)
+..++++.|||+||++|..++. .+ .+.+.+++...+|...
T Consensus 276 p~~kliVTGHSLGGALAtLaAa~L~~~~~~~l~~~~~~vYTFGqPRVG 323 (475)
T PLN02162 276 KNLKYILTGHSLGGALAALFPAILAIHGEDELLDKLEGIYTFGQPRVG 323 (475)
T ss_pred CCceEEEEecChHHHHHHHHHHHHHHccccccccccceEEEeCCCCcc
Confidence 3468999999999999988753 11 2234566766666543
No 191
>PLN02571 triacylglycerol lipase
Probab=94.92 E-value=0.032 Score=53.64 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=18.5
Q ss_pred CCEEEEecchhHHHHHHHHHh
Q psy1220 162 HPVIAFGGSYGGMLAFWLRLK 182 (337)
Q Consensus 162 ~~~il~G~S~GG~la~~~~~~ 182 (337)
.++++.|||+||+||...|..
T Consensus 226 ~sI~VTGHSLGGALAtLaA~d 246 (413)
T PLN02571 226 ISITICGHSLGAALATLNAVD 246 (413)
T ss_pred ccEEEeccchHHHHHHHHHHH
Confidence 479999999999999998764
No 192
>PLN03037 lipase class 3 family protein; Provisional
Probab=94.75 E-value=0.076 Score=52.26 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHH----hCCCc-eeEeeecCccc
Q psy1220 134 AQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRL----KYPHI-VQGALASSAPM 197 (337)
Q Consensus 134 ~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~----~~P~~-v~~~v~~sap~ 197 (337)
+|.++++..+++..++. .+..++++.|||+||+||...|. ..|.. --.++...+|.
T Consensus 298 eQVl~eV~rLv~~Yk~~--------ge~~SItVTGHSLGGALAtLaA~DIa~~~p~~~~VtvyTFGsPR 358 (525)
T PLN03037 298 EQVMEEVKRLVNFFKDR--------GEEVSLTITGHSLGGALALLNAYEAARSVPALSNISVISFGAPR 358 (525)
T ss_pred HHHHHHHHHHHHhcccc--------CCcceEEEeccCHHHHHHHHHHHHHHHhCCCCCCeeEEEecCCC
Confidence 56666776666655421 12357999999999999988774 34553 22344445554
No 193
>PLN00413 triacylglycerol lipase
Probab=94.50 E-value=0.12 Score=50.40 Aligned_cols=39 Identities=23% Similarity=0.292 Sum_probs=27.7
Q ss_pred CCCCEEEEecchhHHHHHHHHHh--------CCCceeEeeecCcccc
Q psy1220 160 KPHPVIAFGGSYGGMLAFWLRLK--------YPHIVQGALASSAPMF 198 (337)
Q Consensus 160 ~~~~~il~G~S~GG~la~~~~~~--------~P~~v~~~v~~sap~~ 198 (337)
+..++++.|||+||++|..++.. ....+.+++...+|..
T Consensus 282 p~~kliVTGHSLGGALAtLaA~~L~~~~~~~~~~ri~~VYTFG~PRV 328 (479)
T PLN00413 282 PTSKFILSGHSLGGALAILFTAVLIMHDEEEMLERLEGVYTFGQPRV 328 (479)
T ss_pred CCCeEEEEecCHHHHHHHHHHHHHHhccchhhccccceEEEeCCCCC
Confidence 34689999999999999988742 1233456666666654
No 194
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=94.46 E-value=0.14 Score=51.47 Aligned_cols=61 Identities=28% Similarity=0.431 Sum_probs=48.4
Q ss_pred ccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCc
Q psy1220 129 GYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSA 195 (337)
Q Consensus 129 ~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sa 195 (337)
+.++-.....|+.+..++|.+++ ......+++.|+|-||+|....+-..|++++++|+-.+
T Consensus 500 K~l~K~NTf~DFIa~a~~Lv~~g------~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VP 560 (682)
T COG1770 500 KLLNKKNTFTDFIAAARHLVKEG------YTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVP 560 (682)
T ss_pred hhhhccccHHHHHHHHHHHHHcC------cCCccceEEeccCchhHHHHHHHhhChhhhhheeecCC
Confidence 44555666778888888887652 22336899999999999999999999999999998763
No 195
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=94.45 E-value=1.2 Score=41.63 Aligned_cols=119 Identities=10% Similarity=-0.022 Sum_probs=65.6
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccc--cccCCCCCC------------CCCCCCc--------
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRY--YGSSLPFGP------------KSLSSPR-------- 126 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg--~G~S~~~~~------------~s~~~~~-------- 126 (337)
.+.||++||.+.+.. |...-+.++.-..++|+..+.+..+. ...+..... .+....+
T Consensus 87 ~G~vIilp~~g~~~d-~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 165 (310)
T PF12048_consen 87 QGAVIILPDWGEHPD-WPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRATEAEEVPSAGDQQLSQPSDEPSPASAQE 165 (310)
T ss_pred ceEEEEecCCCCCCC-cHhHHHHHHHHhhhcCceEEEecCCCcccccCCccCCCCCCCCCCCCCCcCCCCCCCccccccH
Confidence 467889998665543 22222334443456799999988877 221111000 0000000
Q ss_pred -ccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCC-ceeEeeecCccc
Q psy1220 127 -LSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPH-IVQGALASSAPM 197 (337)
Q Consensus 127 -~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~-~v~~~v~~sap~ 197 (337)
....-..+...+-+.+.+..+..+ +..+++|+||+.|+.+++.+..+.+. .++++|+.++-.
T Consensus 166 ~~~~~~~~~~~~ari~Aa~~~~~~~---------~~~~ivlIg~G~gA~~~~~~la~~~~~~~daLV~I~a~~ 229 (310)
T PF12048_consen 166 AEAREAYEERLFARIEAAIAFAQQQ---------GGKNIVLIGHGTGAGWAARYLAEKPPPMPDALVLINAYW 229 (310)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHhc---------CCceEEEEEeChhHHHHHHHHhcCCCcccCeEEEEeCCC
Confidence 000001123333344444444432 22459999999999999999877765 589999887543
No 196
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=94.38 E-value=0.64 Score=45.82 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=72.9
Q ss_pred CCcEEEEeC---CCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCG---NEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQ 145 (337)
Q Consensus 69 ~~pivl~hG---g~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~ 145 (337)
+.|+|++-- .+.....|..++.+- .|-+.|.-|+++-.. ..|.+. -|.++.+.-.+.|++
T Consensus 68 krP~vViDPRAGHGpGIGGFK~dSevG--~AL~~GHPvYFV~F~----p~P~pg-----------QTl~DV~~ae~~Fv~ 130 (581)
T PF11339_consen 68 KRPFVVIDPRAGHGPGIGGFKPDSEVG--VALRAGHPVYFVGFF----PEPEPG-----------QTLEDVMRAEAAFVE 130 (581)
T ss_pred CCCeEEeCCCCCCCCCccCCCcccHHH--HHHHcCCCeEEEEec----CCCCCC-----------CcHHHHHHHHHHHHH
Confidence 678888732 222334555544322 333446667776442 223222 235666666677888
Q ss_pred HHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCccccccC
Q psy1220 146 SLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTN 201 (337)
Q Consensus 146 ~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~~~~ 201 (337)
.+... .+ +..|.+|+|---||..++.+++.+|+.+.-+|+..+|+..-.
T Consensus 131 ~V~~~-----hp--~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPlsywa 179 (581)
T PF11339_consen 131 EVAER-----HP--DAPKPNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPLSYWA 179 (581)
T ss_pred HHHHh-----CC--CCCCceEEeccHHHHHHHHHHhcCcCccCceeecCCCccccc
Confidence 88764 32 223899999999999999999999999999999999987554
No 197
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=94.32 E-value=0.36 Score=41.21 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHh------CCCceeEeeecCccccc
Q psy1220 133 VAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLK------YPHIVQGALASSAPMFQ 199 (337)
Q Consensus 133 ~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~------~P~~v~~~v~~sap~~~ 199 (337)
..+-++++...++....+ - ++.+++|+|.|-|+.++..++.. ..+.|.++++..-|...
T Consensus 60 ~~~G~~~~~~~i~~~~~~-----C---P~~kivl~GYSQGA~V~~~~~~~~~l~~~~~~~I~avvlfGdP~~~ 124 (179)
T PF01083_consen 60 VAAGVANLVRLIEEYAAR-----C---PNTKIVLAGYSQGAMVVGDALSGDGLPPDVADRIAAVVLFGDPRRG 124 (179)
T ss_dssp HHHHHHHHHHHHHHHHHH-----S---TTSEEEEEEETHHHHHHHHHHHHTTSSHHHHHHEEEEEEES-TTTB
T ss_pred HHHHHHHHHHHHHHHHHh-----C---CCCCEEEEecccccHHHHHHHHhccCChhhhhhEEEEEEecCCccc
Confidence 566777888887776654 2 45799999999999999999876 45688999988877653
No 198
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=94.17 E-value=0.065 Score=53.57 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCC---------------CceeEeeecCcccc
Q psy1220 134 AQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYP---------------HIVQGALASSAPMF 198 (337)
Q Consensus 134 ~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P---------------~~v~~~v~~sap~~ 198 (337)
++....+..+|+.+... ....|++|+||||||.++..|...-. ..|++.|..++|..
T Consensus 193 d~YF~rLK~lIE~ay~~--------nggkKVVLV~HSMGglv~lyFL~wv~~~~~~gG~gG~~W~dKyI~s~I~Iagp~l 264 (642)
T PLN02517 193 DQTLSRLKSNIELMVAT--------NGGKKVVVVPHSMGVLYFLHFMKWVEAPAPMGGGGGPGWCAKHIKAVMNIGGPFL 264 (642)
T ss_pred hHHHHHHHHHHHHHHHH--------cCCCeEEEEEeCCchHHHHHHHHhccccccccCCcchHHHHHHHHHheecccccC
Confidence 56677788888877643 12379999999999999999876422 24678888887765
Q ss_pred c
Q psy1220 199 Q 199 (337)
Q Consensus 199 ~ 199 (337)
.
T Consensus 265 G 265 (642)
T PLN02517 265 G 265 (642)
T ss_pred C
Confidence 4
No 199
>PLN02408 phospholipase A1
Probab=94.07 E-value=0.063 Score=50.88 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=24.5
Q ss_pred CCEEEEecchhHHHHHHHHHh----CCCc-eeEeeecCcccc
Q psy1220 162 HPVIAFGGSYGGMLAFWLRLK----YPHI-VQGALASSAPMF 198 (337)
Q Consensus 162 ~~~il~G~S~GG~la~~~~~~----~P~~-v~~~v~~sap~~ 198 (337)
.++++.|||+||+||...+.. ++.. .-.++...+|-.
T Consensus 200 ~sI~vTGHSLGGALAtLaA~dl~~~~~~~~~V~v~tFGsPRV 241 (365)
T PLN02408 200 LSLTITGHSLGAALATLTAYDIKTTFKRAPMVTVISFGGPRV 241 (365)
T ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCCCceEEEEcCCCCc
Confidence 469999999999999887754 3321 223555555543
No 200
>KOG1283|consensus
Probab=93.82 E-value=0.36 Score=44.64 Aligned_cols=98 Identities=26% Similarity=0.310 Sum_probs=66.2
Q ss_pred CCcE-EEEeCCCCCccchhhhhHHHHH--------------HHHhcCCcEEEeccc-ccccCCCCCCCCCCCCcccccCC
Q psy1220 69 GAPV-FFYCGNEDAIETFAENLGFLWE--------------SAKRFSARVVLVEHR-YYGSSLPFGPKSLSSPRLSGYLT 132 (337)
Q Consensus 69 ~~pi-vl~hGg~g~~~~~~~~~~~~~~--------------la~~~~~~vi~~D~r-g~G~S~~~~~~s~~~~~~~~~~t 132 (337)
.+|+ +.+.||+|..+.-..| +.+ +.+. +.++++|-| |-|-|--.+..-+ .-+
T Consensus 30 ~~pl~lwlqGgpGaSstG~GN---FeE~GPl~~~~~~r~~TWlk~--adllfvDnPVGaGfSyVdg~~~Y-------~~~ 97 (414)
T KOG1283|consen 30 ERPLALWLQGGPGASSTGFGN---FEELGPLDLDGSPRDWTWLKD--ADLLFVDNPVGAGFSYVDGSSAY-------TTN 97 (414)
T ss_pred CCCeeEEecCCCCCCCcCccc---hhhcCCcccCCCcCCchhhhh--ccEEEecCCCcCceeeecCcccc-------ccc
Confidence 4564 6678988765432221 222 2222 468999988 7888765332111 134
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhC
Q psy1220 133 VAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKY 183 (337)
Q Consensus 133 ~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~ 183 (337)
.+|...|+.++++.+-.. .+..+..|.+++-.||||-+|..++..-
T Consensus 98 ~~qia~Dl~~llk~f~~~-----h~e~~t~P~~If~ESYGGKma~k~al~l 143 (414)
T KOG1283|consen 98 NKQIALDLVELLKGFFTN-----HPEFKTVPLYIFCESYGGKMAAKFALEL 143 (414)
T ss_pred HHHHHHHHHHHHHHHHhc-----CccccccceEEEEhhcccchhhhhhhhH
Confidence 788999999999888654 3455667999999999999999887654
No 201
>PLN02324 triacylglycerol lipase
Probab=93.66 E-value=0.082 Score=50.82 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=17.9
Q ss_pred CCEEEEecchhHHHHHHHHH
Q psy1220 162 HPVIAFGGSYGGMLAFWLRL 181 (337)
Q Consensus 162 ~~~il~G~S~GG~la~~~~~ 181 (337)
.++++.|||+||+||...|.
T Consensus 215 ~sItvTGHSLGGALAtLaA~ 234 (415)
T PLN02324 215 ISITFTGHSLGAVMSVLSAA 234 (415)
T ss_pred ceEEEecCcHHHHHHHHHHH
Confidence 47999999999999988874
No 202
>PLN02934 triacylglycerol lipase
Probab=93.45 E-value=0.27 Score=48.41 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=27.0
Q ss_pred CCCCEEEEecchhHHHHHHHHHh----C----CCceeEeeecCcccc
Q psy1220 160 KPHPVIAFGGSYGGMLAFWLRLK----Y----PHIVQGALASSAPMF 198 (337)
Q Consensus 160 ~~~~~il~G~S~GG~la~~~~~~----~----P~~v~~~v~~sap~~ 198 (337)
+..++++.|||+||++|..++.. . ...+..++...+|..
T Consensus 319 p~~kIvVTGHSLGGALAtLaA~~L~l~~~~~~l~~~~~vYTFGsPRV 365 (515)
T PLN02934 319 KNAKFVVTGHSLGGALAILFPTVLVLQEETEVMKRLLGVYTFGQPRI 365 (515)
T ss_pred CCCeEEEeccccHHHHHHHHHHHHHHhcccccccCceEEEEeCCCCc
Confidence 44789999999999999988632 1 122345666666654
No 203
>PLN02847 triacylglycerol lipase
Probab=93.13 E-value=0.15 Score=51.02 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=18.9
Q ss_pred CCCCEEEEecchhHHHHHHHHH
Q psy1220 160 KPHPVIAFGGSYGGMLAFWLRL 181 (337)
Q Consensus 160 ~~~~~il~G~S~GG~la~~~~~ 181 (337)
++.+++++|||+||.+|+.++.
T Consensus 249 PdYkLVITGHSLGGGVAALLAi 270 (633)
T PLN02847 249 PDFKIKIVGHSLGGGTAALLTY 270 (633)
T ss_pred CCCeEEEeccChHHHHHHHHHH
Confidence 4469999999999999988764
No 204
>PLN02802 triacylglycerol lipase
Probab=93.06 E-value=0.11 Score=51.00 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=24.1
Q ss_pred CCEEEEecchhHHHHHHHHHh----CCCc-eeEeeecCccc
Q psy1220 162 HPVIAFGGSYGGMLAFWLRLK----YPHI-VQGALASSAPM 197 (337)
Q Consensus 162 ~~~il~G~S~GG~la~~~~~~----~P~~-v~~~v~~sap~ 197 (337)
.++++.|||+||+||...+.. .++. ...++...+|-
T Consensus 330 ~sI~VTGHSLGGALAtLaA~dL~~~~~~~~pV~vyTFGsPR 370 (509)
T PLN02802 330 LSITVTGHSLGAALALLVADELATCVPAAPPVAVFSFGGPR 370 (509)
T ss_pred ceEEEeccchHHHHHHHHHHHHHHhCCCCCceEEEEcCCCC
Confidence 479999999999999876643 3432 12355555554
No 205
>PLN02753 triacylglycerol lipase
Probab=93.02 E-value=0.15 Score=50.23 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.6
Q ss_pred CCCEEEEecchhHHHHHHHHH
Q psy1220 161 PHPVIAFGGSYGGMLAFWLRL 181 (337)
Q Consensus 161 ~~~~il~G~S~GG~la~~~~~ 181 (337)
..++++.|||+||+||...|.
T Consensus 311 ~~sItVTGHSLGGALAtLaA~ 331 (531)
T PLN02753 311 DLSITVTGHSLGGALAILSAY 331 (531)
T ss_pred CceEEEEccCHHHHHHHHHHH
Confidence 368999999999999998874
No 206
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.94 E-value=0.36 Score=40.68 Aligned_cols=113 Identities=16% Similarity=0.127 Sum_probs=64.3
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcC-CcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFS-ARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSL 147 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~-~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l 147 (337)
|.|||.+--..|.-..+. ..|.+..++.... .+|-.+-.-|-..-+-.. +.-+..+-++--++.-+.+
T Consensus 26 G~pVvvFpts~Grf~eye-d~G~v~ala~fie~G~vQlft~~gldsESf~a----------~h~~~adr~~rH~AyerYv 94 (227)
T COG4947 26 GIPVVVFPTSGGRFNEYE-DFGMVDALASFIEEGLVQLFTLSGLDSESFLA----------THKNAADRAERHRAYERYV 94 (227)
T ss_pred CCcEEEEecCCCcchhhh-hcccHHHHHHHHhcCcEEEEEecccchHhHhh----------hcCCHHHHHHHHHHHHHHH
Confidence 789988877766654444 3566777775322 133333222221111000 0111222222222222333
Q ss_pred HhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcccccc
Q psy1220 148 EDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQT 200 (337)
Q Consensus 148 ~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~~~ 200 (337)
.++. + + .+.++-|.||||+.|+.+..++|+++.++|+.|+...+.
T Consensus 95 ~eEa----l---p-gs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdar 139 (227)
T COG4947 95 IEEA----L---P-GSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDAR 139 (227)
T ss_pred HHhh----c---C-CCccccccchhhhhhhhhheeChhHhhhheeecceeeHH
Confidence 3220 2 1 468899999999999999999999999999998876543
No 207
>KOG2237|consensus
Probab=92.94 E-value=0.14 Score=51.26 Aligned_cols=83 Identities=17% Similarity=0.149 Sum_probs=58.8
Q ss_pred cCCcEEEeccccc---ccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHH
Q psy1220 99 FSARVVLVEHRYY---GSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGML 175 (337)
Q Consensus 99 ~~~~vi~~D~rg~---G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~l 175 (337)
.|.-....+-||= |++...+. +...-....+|+.+-++.|-+++ .....+..+.|.|-||.|
T Consensus 498 ~G~Vla~a~VRGGGe~G~~WHk~G---------~lakKqN~f~Dfia~AeyLve~g------yt~~~kL~i~G~SaGGlL 562 (712)
T KOG2237|consen 498 RGWVLAYANVRGGGEYGEQWHKDG---------RLAKKQNSFDDFIACAEYLVENG------YTQPSKLAIEGGSAGGLL 562 (712)
T ss_pred cceEEEEEeeccCcccccchhhcc---------chhhhcccHHHHHHHHHHHHHcC------CCCccceeEecccCccch
Confidence 5666667788874 44433221 12223456788888888887652 234479999999999999
Q ss_pred HHHHHHhCCCceeEeeecCcc
Q psy1220 176 AFWLRLKYPHIVQGALASSAP 196 (337)
Q Consensus 176 a~~~~~~~P~~v~~~v~~sap 196 (337)
+....-++|+++.++|+-.+.
T Consensus 563 vga~iN~rPdLF~avia~Vpf 583 (712)
T KOG2237|consen 563 VGACINQRPDLFGAVIAKVPF 583 (712)
T ss_pred hHHHhccCchHhhhhhhcCcc
Confidence 999999999999888876543
No 208
>PLN02761 lipase class 3 family protein
Probab=92.42 E-value=0.15 Score=50.18 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=17.9
Q ss_pred CCEEEEecchhHHHHHHHHH
Q psy1220 162 HPVIAFGGSYGGMLAFWLRL 181 (337)
Q Consensus 162 ~~~il~G~S~GG~la~~~~~ 181 (337)
.++++.|||+||+||...+.
T Consensus 294 ~sItVTGHSLGGALAtLaA~ 313 (527)
T PLN02761 294 ISITVTGHSLGASLALVSAY 313 (527)
T ss_pred ceEEEeccchHHHHHHHHHH
Confidence 58999999999999998774
No 209
>KOG1516|consensus
Probab=92.38 E-value=0.29 Score=49.20 Aligned_cols=40 Identities=25% Similarity=0.317 Sum_probs=28.7
Q ss_pred CCCCEEEEecchhHHHHHHHHH--hCCCceeEeeecCccccc
Q psy1220 160 KPHPVIAFGGSYGGMLAFWLRL--KYPHIVQGALASSAPMFQ 199 (337)
Q Consensus 160 ~~~~~il~G~S~GG~la~~~~~--~~P~~v~~~v~~sap~~~ 199 (337)
+..++.++|||.||..+..+.. ..-.+++.+|..|+....
T Consensus 193 dp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~~~ 234 (545)
T KOG1516|consen 193 DPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNALS 234 (545)
T ss_pred CCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcccccc
Confidence 4479999999999999876653 223677788866655443
No 210
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=91.64 E-value=0.13 Score=47.12 Aligned_cols=39 Identities=23% Similarity=0.423 Sum_probs=33.2
Q ss_pred CCEEEEecchhHHHHHHHHHhCCCceeEeeecCcccccc
Q psy1220 162 HPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQT 200 (337)
Q Consensus 162 ~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~~~ 200 (337)
..-+|.|-|+||.+|++.+..||+++..++..|+.+...
T Consensus 177 ~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~ 215 (299)
T COG2382 177 DGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWT 215 (299)
T ss_pred CCcEEeccccccHHHHHHHhcCchhhceeeccCCccccC
Confidence 457899999999999999999999998888777655433
No 211
>PLN02719 triacylglycerol lipase
Probab=91.55 E-value=0.37 Score=47.46 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=17.9
Q ss_pred CCEEEEecchhHHHHHHHHH
Q psy1220 162 HPVIAFGGSYGGMLAFWLRL 181 (337)
Q Consensus 162 ~~~il~G~S~GG~la~~~~~ 181 (337)
.++++.|||+||+||...|.
T Consensus 298 ~sItVTGHSLGGALAtLaA~ 317 (518)
T PLN02719 298 LSITVTGHSLGGALAVLSAY 317 (518)
T ss_pred ceEEEecCcHHHHHHHHHHH
Confidence 58999999999999998774
No 212
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=90.41 E-value=0.47 Score=47.03 Aligned_cols=133 Identities=17% Similarity=0.143 Sum_probs=71.0
Q ss_pred EeeEEEEeCcccCCCCCCcEEEEeCCCCCccchhhhhHHH-HHHHHhcCCcEEEecccccccCCCCCCCCC-CCCccccc
Q psy1220 53 FPLKYLINDEFWDEDGGAPVFFYCGNEDAIETFAENLGFL-WESAKRFSARVVLVEHRYYGSSLPFGPKSL-SSPRLSGY 130 (337)
Q Consensus 53 f~qry~~~~~~~~~~~~~pivl~hGg~g~~~~~~~~~~~~-~~la~~~~~~vi~~D~rg~G~S~~~~~~s~-~~~~~~~~ 130 (337)
+.-..|..+ .|++ + ++..||+|-........+.. ...+-..|+.++.=|- ||..+....+.+. ..++.+..
T Consensus 17 i~fev~LP~-~WNg---R--~~~~GgGG~~G~i~~~~~~~~~~~~~~~G~A~~~TD~-Gh~~~~~~~~~~~~~n~~~~~d 89 (474)
T PF07519_consen 17 IRFEVWLPD-NWNG---R--FLQVGGGGFAGGINYADGKASMATALARGYATASTDS-GHQGSAGSDDASFGNNPEALLD 89 (474)
T ss_pred EEEEEECCh-hhcc---C--eEEECCCeeeCcccccccccccchhhhcCeEEEEecC-CCCCCcccccccccCCHHHHHH
Confidence 333444455 4542 2 56666666443332211111 1233456888888886 6655432111111 00000100
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCcccc
Q psy1220 131 LTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMF 198 (337)
Q Consensus 131 ~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~ 198 (337)
+ .-+++.+...+-+.+.+. +-..+...-...|+|-||--++..|++||+.++|+++.++...
T Consensus 90 f-a~ra~h~~~~~aK~l~~~-----~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~ 151 (474)
T PF07519_consen 90 F-AYRALHETTVVAKALIEA-----FYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAIN 151 (474)
T ss_pred H-HhhHHHHHHHHHHHHHHH-----HhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHH
Confidence 0 012233333333444333 2233446789999999999999999999999999998875543
No 213
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=89.92 E-value=0.84 Score=39.89 Aligned_cols=44 Identities=18% Similarity=0.097 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhC
Q psy1220 133 VAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKY 183 (337)
Q Consensus 133 ~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~ 183 (337)
.+-+-.|+.+..+...++ . .+..|+||+|||=|+++...+..++
T Consensus 73 ~~~ay~DV~~AF~~yL~~-----~--n~GRPfILaGHSQGs~~l~~LL~e~ 116 (207)
T PF11288_consen 73 FDLAYSDVRAAFDYYLAN-----Y--NNGRPFILAGHSQGSMHLLRLLKEE 116 (207)
T ss_pred HHhhHHHHHHHHHHHHHh-----c--CCCCCEEEEEeChHHHHHHHHHHHH
Confidence 344566776555554433 2 2447999999999999999998776
No 214
>KOG4569|consensus
Probab=89.68 E-value=0.54 Score=44.39 Aligned_cols=37 Identities=22% Similarity=0.132 Sum_probs=24.8
Q ss_pred CCCEEEEecchhHHHHHHHHH----hCCC--ceeEeeecCccc
Q psy1220 161 PHPVIAFGGSYGGMLAFWLRL----KYPH--IVQGALASSAPM 197 (337)
Q Consensus 161 ~~~~il~G~S~GG~la~~~~~----~~P~--~v~~~v~~sap~ 197 (337)
+-++.+.|||+||++|...|. ..+. .-.+++..+.|.
T Consensus 170 ~~~i~vTGHSLGgAlA~laa~~i~~~~~~~~~~v~v~tFG~PR 212 (336)
T KOG4569|consen 170 NYSIWVTGHSLGGALASLAALDLVKNGLKTSSPVKVYTFGQPR 212 (336)
T ss_pred CcEEEEecCChHHHHHHHHHHHHHHcCCCCCCceEEEEecCCC
Confidence 468999999999999987764 2321 233455555553
No 215
>KOG4388|consensus
Probab=89.55 E-value=1.1 Score=44.67 Aligned_cols=107 Identities=15% Similarity=0.199 Sum_probs=63.8
Q ss_pred EEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhh
Q psy1220 72 VFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDAS 151 (337)
Q Consensus 72 ivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~ 151 (337)
||-+|||+--...-..+.-++..++++++.-||.+|.----+ .|++ .-.++..=.+..+|..-.
T Consensus 399 i~HcHGGGfVAqsSkSHE~YLr~Wa~aL~cPiiSVdYSLAPE-aPFP------------RaleEv~fAYcW~inn~a--- 462 (880)
T KOG4388|consen 399 IVHCHGGGFVAQSSKSHEPYLRSWAQALGCPIISVDYSLAPE-APFP------------RALEEVFFAYCWAINNCA--- 462 (880)
T ss_pred EEEecCCceeeeccccccHHHHHHHHHhCCCeEEeeeccCCC-CCCC------------cHHHHHHHHHHHHhcCHH---
Confidence 677888876555444555578889999999999999732211 1111 113333333334443322
Q ss_pred hhhccCCCCCCCEEEEecchhHHHHHHHHHhC---CCc-eeEeeecCcccc
Q psy1220 152 RLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKY---PHI-VQGALASSAPMF 198 (337)
Q Consensus 152 ~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~---P~~-v~~~v~~sap~~ 198 (337)
+.+...++++++|-|-||.+..-.+.|. --+ -+|+++.-.|..
T Consensus 463 ----llG~TgEriv~aGDSAGgNL~~~VaLr~i~~gvRvPDGl~laY~ptl 509 (880)
T KOG4388|consen 463 ----LLGSTGERIVLAGDSAGGNLCFTVALRAIAYGVRVPDGLMLAYPPTL 509 (880)
T ss_pred ----HhCcccceEEEeccCCCcceeehhHHHHHHhCCCCCCceEEecChhh
Confidence 1233457999999999999877666542 111 256776655543
No 216
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=89.47 E-value=9.1 Score=33.64 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=27.8
Q ss_pred CCEEEEecchhHHHHHHHHHhCCCceeEeeecCcccccc
Q psy1220 162 HPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQT 200 (337)
Q Consensus 162 ~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~~~~ 200 (337)
..+.|+++|||=.+|..+....| +...++..+...+.
T Consensus 57 ~~i~lvAWSmGVw~A~~~l~~~~--~~~aiAINGT~~Pi 93 (213)
T PF04301_consen 57 REIYLVAWSMGVWAANRVLQGIP--FKRAIAINGTPYPI 93 (213)
T ss_pred ceEEEEEEeHHHHHHHHHhccCC--cceeEEEECCCCCc
Confidence 78999999999999988876655 56666655554444
No 217
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=88.70 E-value=2.6 Score=40.38 Aligned_cols=65 Identities=25% Similarity=0.262 Sum_probs=48.4
Q ss_pred HhcCCcEEEec-ccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHH
Q psy1220 97 KRFSARVVLVE-HRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGML 175 (337)
Q Consensus 97 ~~~~~~vi~~D-~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~l 175 (337)
++.|..||.+| +||| =|. .|.++..+|+..+|+....+ . +..+++|+|.|+|.-+
T Consensus 284 ~~~gvpVvGvdsLRYf-W~~---------------rtPe~~a~Dl~r~i~~y~~~-----w---~~~~~~liGySfGADv 339 (456)
T COG3946 284 QKQGVPVVGVDSLRYF-WSE---------------RTPEQIAADLSRLIRFYARR-----W---GAKRVLLIGYSFGADV 339 (456)
T ss_pred HHCCCceeeeehhhhh-hcc---------------CCHHHHHHHHHHHHHHHHHh-----h---CcceEEEEeecccchh
Confidence 34688999998 4554 222 34789999999999998865 4 4579999999999977
Q ss_pred HHHHHHhCCC
Q psy1220 176 AFWLRLKYPH 185 (337)
Q Consensus 176 a~~~~~~~P~ 185 (337)
--..-.+-|.
T Consensus 340 lP~~~n~L~~ 349 (456)
T COG3946 340 LPFAYNRLPP 349 (456)
T ss_pred hHHHHHhCCH
Confidence 6555555554
No 218
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=88.61 E-value=3.7 Score=36.87 Aligned_cols=105 Identities=16% Similarity=0.118 Sum_probs=58.2
Q ss_pred CcEEEEeCCCCCccc-hhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 70 APVFFYCGNEDAIET-FAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 70 ~pivl~hGg~g~~~~-~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
.-||-+.||..-... --...-+...|+++ |+.||+.-... | ++... -..+....+...++.+.
T Consensus 17 ~gvihFiGGaf~ga~P~itYr~lLe~La~~-Gy~ViAtPy~~-t----fDH~~----------~A~~~~~~f~~~~~~L~ 80 (250)
T PF07082_consen 17 KGVIHFIGGAFVGAAPQITYRYLLERLADR-GYAVIATPYVV-T----FDHQA----------IAREVWERFERCLRALQ 80 (250)
T ss_pred CEEEEEcCcceeccCcHHHHHHHHHHHHhC-CcEEEEEecCC-C----CcHHH----------HHHHHHHHHHHHHHHHH
Confidence 347878887642211 11111245667765 88888864421 0 11000 02334444455555555
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecC
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASS 194 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~s 194 (337)
.... + ....-|++-+|||+|.-+-+.+...++..-++-++.|
T Consensus 81 ~~~~---~-~~~~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliS 122 (250)
T PF07082_consen 81 KRGG---L-DPAYLPVYGVGHSLGCKLHLLIGSLFDVERAGNILIS 122 (250)
T ss_pred HhcC---C-CcccCCeeeeecccchHHHHHHhhhccCcccceEEEe
Confidence 4311 1 1112488889999999999999888876656666555
No 219
>KOG1202|consensus
Probab=87.72 E-value=24 Score=38.78 Aligned_cols=94 Identities=21% Similarity=0.242 Sum_probs=55.7
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHH-HHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVD-VIQSL 147 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~-~i~~l 147 (337)
+.|+||+|.-||... .+..++.++ +.|-||.-... +. ..+.++++++ +|+.+
T Consensus 2123 ~~~~Ffv~pIEG~tt-------~l~~la~rl-------e~PaYglQ~T~---------~v----P~dSies~A~~yirqi 2175 (2376)
T KOG1202|consen 2123 EPPLFFVHPIEGFTT-------ALESLASRL-------EIPAYGLQCTE---------AV----PLDSIESLAAYYIRQI 2175 (2376)
T ss_pred CCceEEEeccccchH-------HHHHHHhhc-------CCcchhhhccc---------cC----CcchHHHHHHHHHHHH
Confidence 678999999776532 256677664 45566642210 00 1123444443 45666
Q ss_pred HhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCC--CceeEee-ecCccc
Q psy1220 148 EDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYP--HIVQGAL-ASSAPM 197 (337)
Q Consensus 148 ~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P--~~v~~~v-~~sap~ 197 (337)
++- .+..|..++|.|||..++..++..-- +....+| +..+|.
T Consensus 2176 rkv--------QP~GPYrl~GYSyG~~l~f~ma~~Lqe~~~~~~lillDGspt 2220 (2376)
T KOG1202|consen 2176 RKV--------QPEGPYRLAGYSYGACLAFEMASQLQEQQSPAPLILLDGSPT 2220 (2376)
T ss_pred Hhc--------CCCCCeeeeccchhHHHHHHHHHHHHhhcCCCcEEEecCchH
Confidence 531 24579999999999999988875432 2233455 555554
No 220
>KOG3043|consensus
Probab=87.43 E-value=0.65 Score=40.87 Aligned_cols=92 Identities=14% Similarity=0.138 Sum_probs=62.0
Q ss_pred HHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecch
Q psy1220 92 LWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSY 171 (337)
Q Consensus 92 ~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~ 171 (337)
...+|.. |+.|+.+|.- .|.-..........+.-++..+.+-.-.|+..++++++.+ . ...++=++|--|
T Consensus 60 Adk~A~~-Gy~v~vPD~~-~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~-----g---~~kkIGv~GfCw 129 (242)
T KOG3043|consen 60 ADKVALN-GYTVLVPDFF-RGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNH-----G---DSKKIGVVGFCW 129 (242)
T ss_pred HHHHhcC-CcEEEcchhh-cCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHc-----C---CcceeeEEEEee
Confidence 3345544 8999999983 3421111111111122345567777889999999999965 2 346899999999
Q ss_pred hHHHHHHHHHhCCCceeEeeecC
Q psy1220 172 GGMLAFWLRLKYPHIVQGALASS 194 (337)
Q Consensus 172 GG~la~~~~~~~P~~v~~~v~~s 194 (337)
||.++..+..++| ++.+++...
T Consensus 130 Gak~vv~~~~~~~-~f~a~v~~h 151 (242)
T KOG3043|consen 130 GAKVVVTLSAKDP-EFDAGVSFH 151 (242)
T ss_pred cceEEEEeeccch-hheeeeEec
Confidence 9999999999999 566666544
No 221
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=86.72 E-value=0.33 Score=48.48 Aligned_cols=91 Identities=20% Similarity=0.097 Sum_probs=62.1
Q ss_pred HHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecc
Q psy1220 91 FLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGS 170 (337)
Q Consensus 91 ~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S 170 (337)
.+.-+.+ .|..-+....||=|+=.|.=.. .-...+-+...+|+.++.+.|.+++ + ....++-+.|+|
T Consensus 442 ~~~~WLe-rGg~~v~ANIRGGGEfGp~WH~------Aa~k~nrq~vfdDf~AVaedLi~rg----i--tspe~lgi~GgS 508 (648)
T COG1505 442 SRKLWLE-RGGVFVLANIRGGGEFGPEWHQ------AGMKENKQNVFDDFIAVAEDLIKRG----I--TSPEKLGIQGGS 508 (648)
T ss_pred hhHHHHh-cCCeEEEEecccCCccCHHHHH------HHhhhcchhhhHHHHHHHHHHHHhC----C--CCHHHhhhccCC
Confidence 3433444 4777888899996654331000 0001224557889999999998762 2 122588999999
Q ss_pred hhHHHHHHHHHhCCCceeEeeecC
Q psy1220 171 YGGMLAFWLRLKYPHIVQGALASS 194 (337)
Q Consensus 171 ~GG~la~~~~~~~P~~v~~~v~~s 194 (337)
=||.|......++||.+.++|.-.
T Consensus 509 NGGLLvg~alTQrPelfgA~v~ev 532 (648)
T COG1505 509 NGGLLVGAALTQRPELFGAAVCEV 532 (648)
T ss_pred CCceEEEeeeccChhhhCceeecc
Confidence 999999999999999887777655
No 222
>KOG4540|consensus
Probab=85.59 E-value=1.1 Score=40.79 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=26.5
Q ss_pred CCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCccc
Q psy1220 160 KPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPM 197 (337)
Q Consensus 160 ~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~ 197 (337)
++.++.+-|||+||.+|..+-.+|-= -+|+.++|-
T Consensus 274 pda~iwlTGHSLGGa~AsLlG~~fgl---P~VaFesPG 308 (425)
T KOG4540|consen 274 PDARIWLTGHSLGGAIASLLGIRFGL---PVVAFESPG 308 (425)
T ss_pred CCceEEEeccccchHHHHHhccccCC---ceEEecCch
Confidence 56799999999999999999888742 234444453
No 223
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=85.59 E-value=1.1 Score=40.79 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=26.5
Q ss_pred CCCCEEEEecchhHHHHHHHHHhCCCceeEeeecCccc
Q psy1220 160 KPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPM 197 (337)
Q Consensus 160 ~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~sap~ 197 (337)
++.++.+-|||+||.+|..+-.+|-= -+|+.++|-
T Consensus 274 pda~iwlTGHSLGGa~AsLlG~~fgl---P~VaFesPG 308 (425)
T COG5153 274 PDARIWLTGHSLGGAIASLLGIRFGL---PVVAFESPG 308 (425)
T ss_pred CCceEEEeccccchHHHHHhccccCC---ceEEecCch
Confidence 56799999999999999999888742 234444453
No 224
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=84.01 E-value=2.8 Score=39.62 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=30.1
Q ss_pred CCCCEEEEecchhHHHHHHHHHhCC-----CceeEeeecCccccc
Q psy1220 160 KPHPVIAFGGSYGGMLAFWLRLKYP-----HIVQGALASSAPMFQ 199 (337)
Q Consensus 160 ~~~~~il~G~S~GG~la~~~~~~~P-----~~v~~~v~~sap~~~ 199 (337)
...|++++|||+|+-+-....+.-+ ..|+.+++..+|+..
T Consensus 218 G~RpVtLvG~SLGarvI~~cL~~L~~~~~~~lVe~VvL~Gapv~~ 262 (345)
T PF05277_consen 218 GERPVTLVGHSLGARVIYYCLLELAERKAFGLVENVVLMGAPVPS 262 (345)
T ss_pred CCCceEEEeecccHHHHHHHHHHHHhccccCeEeeEEEecCCCCC
Confidence 4469999999999988765544333 348888988888754
No 225
>KOG1551|consensus
Probab=83.75 E-value=4.3 Score=36.81 Aligned_cols=118 Identities=18% Similarity=0.138 Sum_probs=63.7
Q ss_pred CCCeEeeEEEEeCcccCCCCCCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCccc
Q psy1220 49 SNQTFPLKYLINDEFWDEDGGAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLS 128 (337)
Q Consensus 49 ~~~tf~qry~~~~~~~~~~~~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~ 128 (337)
+.+|-.-++++. ++ -+++-+...+.|+..-+.. --+...+.++ +...+.++-++||+..|....
T Consensus 98 ~~~~A~~~~liP----QK--~~~KOG~~a~tgdh~y~rr-~~L~~p~~k~-~i~tmvle~pfYgqr~p~~q~-------- 161 (371)
T KOG1551|consen 98 ESRTARVAWLIP----QK--MADLCLSWALTGDHVYTRR-LVLSKPINKR-EIATMVLEKPFYGQRVPEEQI-------- 161 (371)
T ss_pred cccceeeeeecc----cC--cCCeeEEEeecCCceeEee-eeecCchhhh-cchheeeecccccccCCHHHH--------
Confidence 355555555554 22 3566655555555332211 0112334443 456889999999998874211
Q ss_pred ccCCHHHHHHHH----HHHHHHHHhhhhhhccC---CCCCCCEEEEecchhHHHHHHHHHhCCCceeE
Q psy1220 129 GYLTVAQTLADF----VDVIQSLEDASRLRIGA---AFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQG 189 (337)
Q Consensus 129 ~~~t~~~~~~D~----~~~i~~l~~~~~~~~~~---~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~ 189 (337)
...-+.+.|+ ++.|++.... +. ...-.+..++|-||||.+|...-..+|.-|.-
T Consensus 162 --~~~Le~vtDlf~mG~A~I~E~~~l-----f~Ws~~~g~g~~~~~g~Smgg~~a~~vgS~~q~Pva~ 222 (371)
T KOG1551|consen 162 --IHMLEYVTDLFKMGRATIQEFVKL-----FTWSSADGLGNLNLVGRSMGGDIANQVGSLHQKPVAT 222 (371)
T ss_pred --HHHHHHHHHHHHhhHHHHHHHHHh-----cccccccCcccceeeeeecccHHHHhhcccCCCCccc
Confidence 1111222232 1222222211 11 11226899999999999999999877765543
No 226
>KOG2551|consensus
Probab=81.50 E-value=12 Score=33.03 Aligned_cols=98 Identities=21% Similarity=0.184 Sum_probs=58.8
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccc----cccCC--C-------CC-----CCCCCC-C-ccc
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRY----YGSSL--P-------FG-----PKSLSS-P-RLS 128 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg----~G~S~--~-------~~-----~~s~~~-~-~~~ 128 (337)
+.-|+++||.-.+...|...+|-+....+.. +..+++|-|- -+.+. + .+ -.++.. + ..-
T Consensus 5 k~rvLcLHGfrQsg~~F~~Ktg~~rK~l~k~-~el~f~~aPh~~~~~~~~~~~~~~~~~a~~~~~~~~~~Wf~~n~~~~~ 83 (230)
T KOG2551|consen 5 KLRVLCLHGFRQSGKVFSEKTGSLRKLLKKL-AELVFPDAPHELPKADLPDSEREKKFDAPPDVEQNRYGWFSNNEASFT 83 (230)
T ss_pred CceEEEecchhhccHHHHHHhhhHHHHHHhh-heEEecCCCccCCcccCCcccccccccCCcccccchhhhhcccccccc
Confidence 3459999999888888877777677766655 6788887762 11111 1 00 000000 0 112
Q ss_pred ccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCE-EEEecchhHHHHHHHHH
Q psy1220 129 GYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPV-IAFGGSYGGMLAFWLRL 181 (337)
Q Consensus 129 ~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~-il~G~S~GG~la~~~~~ 181 (337)
.+...+..++-++..++..+ |. =|+|.|-|..+++.++.
T Consensus 84 ~~~~~eesl~yl~~~i~enG--------------PFDGllGFSQGA~laa~l~~ 123 (230)
T KOG2551|consen 84 EYFGFEESLEYLEDYIKENG--------------PFDGLLGFSQGAALAALLAG 123 (230)
T ss_pred cccChHHHHHHHHHHHHHhC--------------CCccccccchhHHHHHHhhc
Confidence 34455555555555544333 33 37999999999999887
No 227
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=80.25 E-value=8.3 Score=37.97 Aligned_cols=96 Identities=23% Similarity=0.363 Sum_probs=57.7
Q ss_pred cCCCC-CCcE-EEEeCCCCCccchhhhhHHHHHHHHhcCC-cEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHH
Q psy1220 64 WDEDG-GAPV-FFYCGNEDAIETFAENLGFLWESAKRFSA-RVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADF 140 (337)
Q Consensus 64 ~~~~~-~~pi-vl~hGg~g~~~~~~~~~~~~~~la~~~~~-~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~ 140 (337)
..+|. ++|+ |.+-| .-.++.|.. .-+.+++|+ -++.-|.|=-|.+--. ..++.-+-+
T Consensus 282 FnPGD~KPPL~VYFSG-yR~aEGFEg-----y~MMk~Lg~PfLL~~DpRleGGaFYl--------------Gs~eyE~~I 341 (511)
T TIGR03712 282 FNPGDFKPPLNVYFSG-YRPAEGFEG-----YFMMKRLGAPFLLIGDPRLEGGAFYL--------------GSDEYEQGI 341 (511)
T ss_pred cCCcCCCCCeEEeecc-CcccCcchh-----HHHHHhcCCCeEEeeccccccceeee--------------CcHHHHHHH
Confidence 34443 5676 45555 333444432 224466676 4667788887776432 234444444
Q ss_pred HHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHh-CCC
Q psy1220 141 VDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLK-YPH 185 (337)
Q Consensus 141 ~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~-~P~ 185 (337)
.+.|++-.+. .+.+....|+-|-|||.+=|+.++++ -|+
T Consensus 342 ~~~I~~~L~~------LgF~~~qLILSGlSMGTfgAlYYga~l~P~ 381 (511)
T TIGR03712 342 INVIQEKLDY------LGFDHDQLILSGLSMGTFGALYYGAKLSPH 381 (511)
T ss_pred HHHHHHHHHH------hCCCHHHeeeccccccchhhhhhcccCCCc
Confidence 4444443332 24466789999999999999999877 454
No 228
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=78.77 E-value=16 Score=32.26 Aligned_cols=104 Identities=16% Similarity=0.179 Sum_probs=55.7
Q ss_pred cEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhh
Q psy1220 71 PVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDA 150 (337)
Q Consensus 71 pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~ 150 (337)
|+|++-|.-|....... . ..++=.+.|+.++.+-.+.-....+. -.....++.+.+.+......
T Consensus 1 plvvl~gW~gA~~~hl~--K-Y~~~Y~~~g~~il~~~~~~~~~~~~~-------------~~~~~~~~~l~~~l~~~~~~ 64 (240)
T PF05705_consen 1 PLVVLLGWMGAKPKHLA--K-YSDLYQDPGFDILLVTSPPADFFWPS-------------KRLAPAADKLLELLSDSQSA 64 (240)
T ss_pred CEEEEEeCCCCCHHHHH--H-HHHHHHhcCCeEEEEeCCHHHHeeec-------------cchHHHHHHHHHHhhhhccC
Confidence 78999995544222111 0 12222236777887765544333221 11333444444333332211
Q ss_pred hhhhccCCCCCCCEEEEecchhHHHHHHHHH---------hCC-CceeEeeecCccccc
Q psy1220 151 SRLRIGAAFKPHPVIAFGGSYGGMLAFWLRL---------KYP-HIVQGALASSAPMFQ 199 (337)
Q Consensus 151 ~~~~~~~~~~~~~~il~G~S~GG~la~~~~~---------~~P-~~v~~~v~~sap~~~ 199 (337)
...++++=..|.||........ ..+ ..++|.|+.|+|...
T Consensus 65 ---------~~~~il~H~FSnGG~~~~~~l~~~~~~~~~~~~~~~~i~g~I~DS~P~~~ 114 (240)
T PF05705_consen 65 ---------SPPPILFHSFSNGGSFLYSQLLEAYQSRKKFGKLLPRIKGIIFDSCPGIP 114 (240)
T ss_pred ---------CCCCEEEEEEECchHHHHHHHHHHHHhcccccccccccceeEEeCCCCcc
Confidence 1138999999998877665533 112 238999999999654
No 229
>KOG3253|consensus
Probab=72.19 E-value=10 Score=38.32 Aligned_cols=65 Identities=15% Similarity=0.128 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhhcc-CCCCCCCEEEEecchhHHHHHHHHHh-CCCceeEeeecCcccccc
Q psy1220 131 LTVAQTLADFVDVIQSLEDASRLRIG-AAFKPHPVIAFGGSYGGMLAFWLRLK-YPHIVQGALASSAPMFQT 200 (337)
Q Consensus 131 ~t~~~~~~D~~~~i~~l~~~~~~~~~-~~~~~~~~il~G~S~GG~la~~~~~~-~P~~v~~~v~~sap~~~~ 200 (337)
.++.+.++-+..|.+....+ . ..++..+++|+|.|||..++.....- +-..|+++|-.+-|....
T Consensus 223 ~nI~h~ae~~vSf~r~kvle-----i~gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~v 289 (784)
T KOG3253|consen 223 ANIKHAAEYSVSFDRYKVLE-----ITGEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDTV 289 (784)
T ss_pred cchHHHHHHHHHHhhhhhhh-----hhccCCCCceEEEecccCceeeEEeccccCCceEEEEEEecccccCC
Confidence 45788888888887754322 1 12355799999999998888887643 445588888777666543
No 230
>PLN02748 tRNA dimethylallyltransferase
Probab=69.42 E-value=22 Score=35.15 Aligned_cols=87 Identities=16% Similarity=0.167 Sum_probs=57.1
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEec--ccccccCCCCCCCCC-----------CCCcccccCCHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVE--HRYYGSSLPFGPKSL-----------SSPRLSGYLTVAQ 135 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D--~rg~G~S~~~~~~s~-----------~~~~~~~~~t~~~ 135 (337)
.++||++.|-.|+.-+ .+...||+.+++.||..| +-|-|....+...+. ..-+.-..+++.+
T Consensus 21 ~~~~i~i~GptgsGKs-----~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~ 95 (468)
T PLN02748 21 KAKVVVVMGPTGSGKS-----KLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKD 95 (468)
T ss_pred CCCEEEEECCCCCCHH-----HHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHH
Confidence 4568999997666322 356789999999999999 445554432111110 0001125689999
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecc
Q psy1220 136 TLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGS 170 (337)
Q Consensus 136 ~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S 170 (337)
+..+....|+.+..+ - ...||+|+|
T Consensus 96 F~~~A~~~I~~I~~r-----g-----k~PIlVGGT 120 (468)
T PLN02748 96 FRDHAVPLIEEILSR-----N-----GLPVIVGGT 120 (468)
T ss_pred HHHHHHHHHHHHHhc-----C-----CCeEEEcCh
Confidence 999999999998754 1 457788876
No 231
>KOG2029|consensus
Probab=68.92 E-value=12 Score=37.71 Aligned_cols=39 Identities=33% Similarity=0.457 Sum_probs=28.7
Q ss_pred CCCEEEEecchhHHHHHHHHHh-----CCC------ceeEeeecCccccc
Q psy1220 161 PHPVIAFGGSYGGMLAFWLRLK-----YPH------IVQGALASSAPMFQ 199 (337)
Q Consensus 161 ~~~~il~G~S~GG~la~~~~~~-----~P~------~v~~~v~~sap~~~ 199 (337)
+.|++.+||||||.++-.+..+ .|+ ...|++..+.|...
T Consensus 525 ~RPivwI~HSmGGLl~K~lLlda~~S~kP~ms~l~kNtrGiiFls~PHrG 574 (697)
T KOG2029|consen 525 DRPIVWIGHSMGGLLAKKLLLDAYCSSKPDMSNLNKNTRGIIFLSVPHRG 574 (697)
T ss_pred CCceEEEecccchHHHHHHHHHHhhcCCchhhhhhccCCceEEEecCCCC
Confidence 5799999999999998776544 243 34678888877654
No 232
>PRK08118 topology modulation protein; Reviewed
Probab=65.83 E-value=78 Score=26.37 Aligned_cols=35 Identities=6% Similarity=0.187 Sum_probs=26.2
Q ss_pred EEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccc
Q psy1220 73 FFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYG 112 (337)
Q Consensus 73 vl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G 112 (337)
++++|.+|+.-+ .+...|++.++..++-+|.-.+.
T Consensus 4 I~I~G~~GsGKS-----Tlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 4 IILIGSGGSGKS-----TLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred EEEECCCCCCHH-----HHHHHHHHHhCCCceecchhhcc
Confidence 788898887443 24677999999888988876553
No 233
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=65.77 E-value=36 Score=31.73 Aligned_cols=76 Identities=17% Similarity=0.209 Sum_probs=47.2
Q ss_pred CcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEeccc--ccccCCCCCCCC-----------CCCCcccccCCHHHH
Q psy1220 70 APVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHR--YYGSSLPFGPKS-----------LSSPRLSGYLTVAQT 136 (337)
Q Consensus 70 ~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~r--g~G~S~~~~~~s-----------~~~~~~~~~~t~~~~ 136 (337)
..++++.|..|+..+ .+...|+++++..+|..|-+ +.|-+..+...+ .+..+..+.++..+.
T Consensus 4 ~~~i~i~GptgsGKt-----~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f 78 (307)
T PRK00091 4 PKVIVIVGPTASGKT-----ALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADF 78 (307)
T ss_pred ceEEEEECCCCcCHH-----HHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHH
Confidence 468888887766322 34677999999899999885 334332211100 000011234788899
Q ss_pred HHHHHHHHHHHHhh
Q psy1220 137 LADFVDVIQSLEDA 150 (337)
Q Consensus 137 ~~D~~~~i~~l~~~ 150 (337)
+++....++.+..+
T Consensus 79 ~~~a~~~i~~i~~~ 92 (307)
T PRK00091 79 QRDALAAIADILAR 92 (307)
T ss_pred HHHHHHHHHHHHhC
Confidence 99998888877644
No 234
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=65.12 E-value=37 Score=31.60 Aligned_cols=87 Identities=17% Similarity=0.222 Sum_probs=54.8
Q ss_pred CcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEeccc--ccccCCCCCCCCC-----------CCCcccccCCHHHH
Q psy1220 70 APVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHR--YYGSSLPFGPKSL-----------SSPRLSGYLTVAQT 136 (337)
Q Consensus 70 ~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~r--g~G~S~~~~~~s~-----------~~~~~~~~~t~~~~ 136 (337)
.+++++.|-.++. -+.+.-.||+++|+.||..|-. |-|....+...+. +--+..+.+|..++
T Consensus 3 ~~~i~I~GPTAsG-----KT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f 77 (308)
T COG0324 3 PKLIVIAGPTASG-----KTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEF 77 (308)
T ss_pred ccEEEEECCCCcC-----HHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccccHHHH
Confidence 4577777744432 1235678999999999999965 2232221111100 00012346899999
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecch
Q psy1220 137 LADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSY 171 (337)
Q Consensus 137 ~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~ 171 (337)
.+|+...++.+..+ - +..+++|+|+
T Consensus 78 ~~~a~~~i~~i~~r-----g-----k~pIlVGGTg 102 (308)
T COG0324 78 QRDALAAIDDILAR-----G-----KLPILVGGTG 102 (308)
T ss_pred HHHHHHHHHHHHhC-----C-----CCcEEEccHH
Confidence 99999999999865 1 4678888774
No 235
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=63.69 E-value=21 Score=31.61 Aligned_cols=39 Identities=21% Similarity=0.161 Sum_probs=26.3
Q ss_pred CCCEEEEecchhHHHHHHHHHhCCC------ceeEeeecCccccc
Q psy1220 161 PHPVIAFGGSYGGMLAFWLRLKYPH------IVQGALASSAPMFQ 199 (337)
Q Consensus 161 ~~~~il~G~S~GG~la~~~~~~~P~------~v~~~v~~sap~~~ 199 (337)
..+++++|.|.|+.++...+.+.-+ ..-..|+.+-|...
T Consensus 47 ~~~vvV~GySQGA~Va~~~~~~l~~~~~~~~~~l~fVl~gnP~rp 91 (225)
T PF08237_consen 47 GGPVVVFGYSQGAVVASNVLRRLAADGDPPPDDLSFVLIGNPRRP 91 (225)
T ss_pred CCCEEEEEECHHHHHHHHHHHHHHhcCCCCcCceEEEEecCCCCC
Confidence 4789999999999999887655411 12345555555443
No 236
>PLN02840 tRNA dimethylallyltransferase
Probab=62.40 E-value=50 Score=32.21 Aligned_cols=87 Identities=21% Similarity=0.245 Sum_probs=54.3
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEeccc--cccc----CCCCCCC-------CCCCCcccccCCHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHR--YYGS----SLPFGPK-------SLSSPRLSGYLTVAQ 135 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~r--g~G~----S~~~~~~-------s~~~~~~~~~~t~~~ 135 (337)
...++++.|..|+.-+ .+...|+++++..+|..|-. +.|. ..|.... -.+.-+.-..+++.+
T Consensus 20 ~~~vi~I~GptgsGKT-----tla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~ 94 (421)
T PLN02840 20 KEKVIVISGPTGAGKS-----RLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGA 94 (421)
T ss_pred CCeEEEEECCCCCCHH-----HHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHH
Confidence 4567888887766322 35677999999889988863 2222 2221100 000011224588999
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecc
Q psy1220 136 TLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGS 170 (337)
Q Consensus 136 ~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S 170 (337)
..+|....++.+..+ - ...||+|++
T Consensus 95 F~~~A~~~I~~i~~r-----g-----kiPIvVGGT 119 (421)
T PLN02840 95 FFDDARRATQDILNR-----G-----RVPIVAGGT 119 (421)
T ss_pred HHHHHHHHHHHHHhc-----C-----CCEEEEcCc
Confidence 999999999988754 1 456778876
No 237
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=61.88 E-value=51 Score=25.20 Aligned_cols=33 Identities=12% Similarity=0.035 Sum_probs=25.7
Q ss_pred CCCCEEEEecchhHHH--HHHHHHhCCCceeEeee
Q psy1220 160 KPHPVIAFGGSYGGML--AFWLRLKYPHIVQGALA 192 (337)
Q Consensus 160 ~~~~~il~G~S~GG~l--a~~~~~~~P~~v~~~v~ 192 (337)
+..+++++|-|=-.-. -..++.+||++|.++.+
T Consensus 63 P~~kfiLIGDsgq~DpeiY~~ia~~~P~~i~ai~I 97 (100)
T PF09949_consen 63 PERKFILIGDSGQHDPEIYAEIARRFPGRILAIYI 97 (100)
T ss_pred CCCcEEEEeeCCCcCHHHHHHHHHHCCCCEEEEEE
Confidence 4579999998866643 45578999999988764
No 238
>KOG4372|consensus
Probab=60.44 E-value=6.6 Score=37.68 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=15.6
Q ss_pred CCEEEEecchhHHHHHHH
Q psy1220 162 HPVIAFGGSYGGMLAFWL 179 (337)
Q Consensus 162 ~~~il~G~S~GG~la~~~ 179 (337)
.++..+|||.||.++...
T Consensus 150 ~kISfvghSLGGLvar~A 167 (405)
T KOG4372|consen 150 EKISFVGHSLGGLVARYA 167 (405)
T ss_pred ceeeeeeeecCCeeeeEE
Confidence 789999999999987654
No 239
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=58.23 E-value=43 Score=30.89 Aligned_cols=84 Identities=19% Similarity=0.222 Sum_probs=51.3
Q ss_pred EEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEeccc--ccccCCCCCCCCC-----------CCCcccccCCHHHHHH
Q psy1220 72 VFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHR--YYGSSLPFGPKSL-----------SSPRLSGYLTVAQTLA 138 (337)
Q Consensus 72 ivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~r--g~G~S~~~~~~s~-----------~~~~~~~~~t~~~~~~ 138 (337)
|+++.|-.|+.- +.+...|++++++.||..|-+ +-|.+..+...+. +.-+....++..+...
T Consensus 1 vi~i~G~t~~GK-----s~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~v~~f~~ 75 (287)
T TIGR00174 1 VIFIMGPTAVGK-----SQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYSAADFQT 75 (287)
T ss_pred CEEEECCCCCCH-----HHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEcHHHHHH
Confidence 467777666532 235677999999999999874 3333221110000 0001124578889999
Q ss_pred HHHHHHHHHHhhhhhhccCCCCCCCEEEEecc
Q psy1220 139 DFVDVIQSLEDASRLRIGAAFKPHPVIAFGGS 170 (337)
Q Consensus 139 D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S 170 (337)
+....++.+..+ ....+++|+|
T Consensus 76 ~a~~~i~~~~~~----------g~~pi~vGGT 97 (287)
T TIGR00174 76 LALNAIADITAR----------GKIPLLVGGT 97 (287)
T ss_pred HHHHHHHHHHhC----------CCCEEEEcCc
Confidence 999999888754 1457888877
No 240
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=56.40 E-value=26 Score=24.28 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=10.2
Q ss_pred CCcEEEEeCCCCCccchhh
Q psy1220 69 GAPVFFYCGNEDAIETFAE 87 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~ 87 (337)
++||+|.||-.+++..|-.
T Consensus 43 k~pVll~HGL~~ss~~wv~ 61 (63)
T PF04083_consen 43 KPPVLLQHGLLQSSDDWVL 61 (63)
T ss_dssp --EEEEE--TT--GGGGCS
T ss_pred CCcEEEECCcccChHHHHc
Confidence 5689999998888877753
No 241
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=50.14 E-value=82 Score=24.17 Aligned_cols=35 Identities=9% Similarity=0.006 Sum_probs=27.3
Q ss_pred EEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccc
Q psy1220 73 FFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYG 112 (337)
Q Consensus 73 vl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G 112 (337)
|++||-+|...+. +...+++..+..++.+|..-..
T Consensus 1 ill~G~~G~GKT~-----l~~~la~~l~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 1 ILLHGPPGTGKTT-----LARALAQYLGFPFIEIDGSELI 35 (132)
T ss_dssp EEEESSTTSSHHH-----HHHHHHHHTTSEEEEEETTHHH
T ss_pred CEEECcCCCCeeH-----HHHHHHhhcccccccccccccc
Confidence 6899988875443 4677899999889999887776
No 242
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=47.41 E-value=1.3e+02 Score=29.17 Aligned_cols=110 Identities=19% Similarity=0.120 Sum_probs=60.6
Q ss_pred cEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCC-----C---cccccC-CHHHHHH---
Q psy1220 71 PVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSS-----P---RLSGYL-TVAQTLA--- 138 (337)
Q Consensus 71 pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~-----~---~~~~~~-t~~~~~~--- 138 (337)
|-|++.|.-... .....++.+..++.|..|+.+|--=.|.+....+.+-+. + +.+... +-.++++
T Consensus 2 ~tI~iigT~DTK---~~E~~yl~~~i~~~G~~v~~iDvg~~~~~~~~~di~~~eVa~~~g~~~~~~~~~~dRg~ai~~M~ 78 (403)
T PF06792_consen 2 KTIAIIGTLDTK---GEELLYLRDQIEAQGVEVLLIDVGTLGEPSFPPDISREEVARAAGDSIEAVRSSGDRGEAIEAMA 78 (403)
T ss_pred CEEEEEEccCCC---HHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCcCHHHHHHhcCCChHHhhccCCHHHHHHHHH
Confidence 346666744432 222346777777789999999985555443322211000 0 011111 2223333
Q ss_pred -HHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEee
Q psy1220 139 -DFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGAL 191 (337)
Q Consensus 139 -D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v 191 (337)
-+..++..+..+ -+..=++-+|+|.|..++....+.-|=-+=.++
T Consensus 79 ~ga~~~v~~l~~~--------g~i~Gvi~~GGs~GT~lat~aMr~LPiG~PKlm 124 (403)
T PF06792_consen 79 RGAARFVSDLYDE--------GKIDGVIGIGGSGGTALATAAMRALPIGFPKLM 124 (403)
T ss_pred HHHHHHHHHHHhc--------CCccEEEEecCCccHHHHHHHHHhCCCCCCeEE
Confidence 333444444432 112568899999999999999988776555555
No 243
>PRK02399 hypothetical protein; Provisional
Probab=45.23 E-value=2.1e+02 Score=27.79 Aligned_cols=110 Identities=19% Similarity=0.084 Sum_probs=58.9
Q ss_pred cEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCC-----C---ccc-ccCCH----HHHH
Q psy1220 71 PVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSS-----P---RLS-GYLTV----AQTL 137 (337)
Q Consensus 71 pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~-----~---~~~-~~~t~----~~~~ 137 (337)
+-|++.|..... .....++.+..++.|..|+.+|--..|......+.+-+. + +.+ ...+- +.+.
T Consensus 4 ~~I~iigT~DTK---~~E~~yl~~~i~~~g~~v~~iDv~~~~~p~~~~dis~~~Va~~~g~~~~~~~~~~dRg~ai~~M~ 80 (406)
T PRK02399 4 KRIYIAGTLDTK---GEELAYVKDLIEAAGLEVVTVDVSGLGEPPFEPDISAEEVAEAAGDGIEAVFCGGDRGSAMAAMA 80 (406)
T ss_pred CEEEEEeccCCc---HHHHHHHHHHHHHCCCceEEEecCCCCCCCCCCCCCHHHHHHHcCCCHHHhhcCccHHHHHHHHH
Confidence 447777754442 223346777777778899999984444221111111000 0 000 00011 2223
Q ss_pred HHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEee
Q psy1220 138 ADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGAL 191 (337)
Q Consensus 138 ~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v 191 (337)
+-+..+++.+.++ .+..=++-+|+|.|..++....+.-|=-+=+++
T Consensus 81 ~ga~~~v~~L~~~--------g~i~gviglGGs~GT~lat~aMr~LPiG~PKlm 126 (406)
T PRK02399 81 EGAAAFVRELYER--------GDVAGVIGLGGSGGTALATPAMRALPIGVPKLM 126 (406)
T ss_pred HHHHHHHHHHHhc--------CCccEEEEecCcchHHHHHHHHHhCCCCCCeEE
Confidence 3333444444332 122568899999999999999988776555555
No 244
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=41.66 E-value=91 Score=26.88 Aligned_cols=60 Identities=22% Similarity=0.259 Sum_probs=33.9
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQS 146 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~ 146 (337)
+.||++.||.....-....... ..+..++.+..|-.-..+|-|.+. ..+.+.|+.++++.
T Consensus 155 ~~pi~~~hG~~D~vvp~~~~~~-~~~~L~~~~~~v~~~~~~g~gH~i-----------------~~~~~~~~~~~l~~ 214 (216)
T PF02230_consen 155 KTPILIIHGDEDPVVPFEWAEK-TAEFLKAAGANVEFHEYPGGGHEI-----------------SPEELRDLREFLEK 214 (216)
T ss_dssp TS-EEEEEETT-SSSTHHHHHH-HHHHHHCTT-GEEEEEETT-SSS-------------------HHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCcccHHHHHH-HHHHHHhcCCCEEEEEcCCCCCCC-----------------CHHHHHHHHHHHhh
Confidence 4689999998877544432211 334445566667777777666554 24567777777654
No 245
>PF11713 Peptidase_C80: Peptidase C80 family; InterPro: IPR020974 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry identifies a domain that functions as a cysteine peptidase that belongs to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). This domain is found in bacterial toxins that self-process by a cysteine peptidase mechanism. These include Vibrio cholerae RTX toxin [], and Clostridium difficile toxins A and B []. Some pathogenic bacteria produce unrelated toxins that also require activation and processing, the processing often being autolytic as it is in anthrax lethal factor, tentoxilysin (the tetanus neurotoxin) and bontoxilysin (the botulinum neurotoxin), all of which are metallopeptidases.; PDB: 3GCD_C 3EEB_B 3FZY_A 3PEE_A 3PA8_B 3HO6_A.
Probab=41.47 E-value=41 Score=27.97 Aligned_cols=59 Identities=12% Similarity=0.032 Sum_probs=34.8
Q ss_pred EEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhhhhcc-CCCCCCCEEEEecchhHH
Q psy1220 104 VLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIG-AAFKPHPVIAFGGSYGGM 174 (337)
Q Consensus 104 i~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~-~~~~~~~~il~G~S~GG~ 174 (337)
+-+-.-|||+... + ...+..++.++.+.-+..|-+.++++ + ......++.++|+|++..
T Consensus 57 ~rw~lVGHG~~~~--~-----~~~l~g~~a~~La~~l~~~~~~l~~~-----~~~~~~P~~IsLvGC~l~~~ 116 (157)
T PF11713_consen 57 VRWQLVGHGRDEF--N-----NQTLAGYSADELANKLIKFKQQLKQK-----YGINISPKKISLVGCSLADN 116 (157)
T ss_dssp EEEEEE--EESST--S-----SSEETTEEHHHHHHHHHHHHHHHHHH-----HTTT--ESEEEEESSS-S-T
T ss_pred ceEEEEEeCCCcC--C-----CceeCCCCHHHHHHHHHHHHHHHHHh-----ccCCCCCCEEEEEEecccCC
Confidence 4455568887721 1 11456677888888777777777765 2 122336899999999987
No 246
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=39.14 E-value=1.9e+02 Score=27.77 Aligned_cols=89 Identities=15% Similarity=0.062 Sum_probs=58.5
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHH---HhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESA---KRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQ 145 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la---~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~ 145 (337)
.+.||++||--.+..........|.+++ ++. ..+-.+|.-|.|--.. .-+|...+..
T Consensus 171 ~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r-~lip~~D~AYQGF~~G-------------------leeDa~~lR~ 230 (396)
T COG1448 171 EGSVVLLHGCCHNPTGIDPTEEQWQELADLIKER-GLIPFFDIAYQGFADG-------------------LEEDAYALRL 230 (396)
T ss_pred CCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHc-CCeeeeehhhhhhccc-------------------hHHHHHHHHH
Confidence 4569999998777766655555566554 443 3688899998886543 3345555544
Q ss_pred HHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeecC
Q psy1220 146 SLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASS 194 (337)
Q Consensus 146 ~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~s 194 (337)
.+.. .+-+++..|+.=..++ |-|+|.++.+.+
T Consensus 231 ~a~~------------~~~~lva~S~SKnfgL-----YgERVGa~~vva 262 (396)
T COG1448 231 FAEV------------GPELLVASSFSKNFGL-----YGERVGALSVVA 262 (396)
T ss_pred HHHh------------CCcEEEEehhhhhhhh-----hhhccceeEEEe
Confidence 4442 2337888887766654 788888877554
No 247
>PF06441 EHN: Epoxide hydrolase N terminus; InterPro: IPR010497 This entry represents the N-terminal region of the eukaryotic epoxide hydrolase protein. Epoxide hydrolases (3.3.2.3 from EC) comprise a group of functionally related enzymes that catalyse the addition of water to oxirane compounds (epoxides), thereby usually generating vicinal trans-diols. EHs have been found in all types of living organisms, including mammals, invertebrates, plants, fungi and bacteria. In animals, the major interest in EH is directed towards their detoxification capacity for epoxides since they are important safeguards against the cytotoxic and genotoxic potential of oxirane derivatives that are often reactive electrophiles because of the high tension of the three-membered ring system and the strong polarisation of the C--O bonds. This is of significant relevance because epoxides are frequent intermediary metabolites, which arise during the biotransformation of foreign compounds []. This domain is often found in conjunction with IPR000073 from INTERPRO.; GO: 0004301 epoxide hydrolase activity, 0009636 response to toxin, 0016020 membrane; PDB: 3G0I_B 3G02_A 1QO7_A.
Probab=38.74 E-value=24 Score=27.65 Aligned_cols=15 Identities=13% Similarity=0.306 Sum_probs=8.1
Q ss_pred CCcEEEEeCCCCCcc
Q psy1220 69 GAPVFFYCGNEDAIE 83 (337)
Q Consensus 69 ~~pivl~hGg~g~~~ 83 (337)
..||+|+||.+|+.-
T Consensus 92 aiPLll~HGWPgSf~ 106 (112)
T PF06441_consen 92 AIPLLLLHGWPGSFL 106 (112)
T ss_dssp -EEEEEE--SS--GG
T ss_pred CeEEEEECCCCccHH
Confidence 568999999998843
No 248
>PLN02165 adenylate isopentenyltransferase
Probab=38.36 E-value=1.5e+02 Score=27.92 Aligned_cols=88 Identities=18% Similarity=0.185 Sum_probs=51.5
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEeccc--ccccCCCCCCCC-----------CCC-CcccccCCHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHR--YYGSSLPFGPKS-----------LSS-PRLSGYLTVA 134 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~r--g~G~S~~~~~~s-----------~~~-~~~~~~~t~~ 134 (337)
.+.++++.|-.|+..+ .+...||+.+++.+|..|-. +-|........+ ... ......++..
T Consensus 42 ~g~iivIiGPTGSGKS-----tLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~ 116 (334)
T PLN02165 42 KDKVVVIMGATGSGKS-----RLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTAS 116 (334)
T ss_pred CCCEEEEECCCCCcHH-----HHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHH
Confidence 4568899997666322 24567999988888888766 223322111000 000 0012246777
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecch
Q psy1220 135 QTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSY 171 (337)
Q Consensus 135 ~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~ 171 (337)
+..++....++.+... ....|++|+|.
T Consensus 117 ~F~~~a~~~I~~i~~~----------~~~PI~vGGTg 143 (334)
T PLN02165 117 EFRSLASLSISEITSR----------QKLPIVAGGSN 143 (334)
T ss_pred HHHHHHHHHHHHHHHC----------CCcEEEECChH
Confidence 7777877788777643 15678888774
No 249
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=33.85 E-value=2.2e+02 Score=26.42 Aligned_cols=85 Identities=16% Similarity=0.183 Sum_probs=51.9
Q ss_pred CcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEeccc--ccccC----CCCCC-------CCCCCCcccccCCHHHH
Q psy1220 70 APVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHR--YYGSS----LPFGP-------KSLSSPRLSGYLTVAQT 136 (337)
Q Consensus 70 ~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~r--g~G~S----~~~~~-------~s~~~~~~~~~~t~~~~ 136 (337)
.+|+++.|-.++.- +.+.-+||++ +..||..|=+ |=|.. .|... .-.+.-+.-..+|+.+.
T Consensus 4 ~~ii~I~GpTasGK-----S~LAl~LA~~-~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f 77 (300)
T PRK14729 4 NKIVFIFGPTAVGK-----SNILFHFPKG-KAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIF 77 (300)
T ss_pred CcEEEEECCCccCH-----HHHHHHHHHh-CCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHH
Confidence 46888888655532 2356778988 5589998865 22222 22110 00000112355899999
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecc
Q psy1220 137 LADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGS 170 (337)
Q Consensus 137 ~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S 170 (337)
.+|....|+.+..+ +...+++|+|
T Consensus 78 ~~~a~~~i~~i~~~----------gk~PilvGGT 101 (300)
T PRK14729 78 YKEALKIIKELRQQ----------KKIPIFVGGS 101 (300)
T ss_pred HHHHHHHHHHHHHC----------CCCEEEEeCc
Confidence 99999999988754 1456888876
No 250
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=33.48 E-value=83 Score=23.88 Aligned_cols=43 Identities=21% Similarity=0.362 Sum_probs=30.3
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcC-CcEEEecccccccCC
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFS-ARVVLVEHRYYGSSL 115 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~-~~vi~~D~rg~G~S~ 115 (337)
..||+++.+.......+.. ...++++++ .++|..|--|||...
T Consensus 34 ~~piL~l~~~~Dp~TP~~~----a~~~~~~l~~s~lvt~~g~gHg~~~ 77 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEG----ARAMAARLPGSRLVTVDGAGHGVYA 77 (103)
T ss_pred CCCEEEEecCcCCCCcHHH----HHHHHHHCCCceEEEEeccCcceec
Confidence 3678888876555555433 456777776 688999888999763
No 251
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=33.30 E-value=82 Score=27.25 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=38.5
Q ss_pred HhcCC-cEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecch----
Q psy1220 97 KRFSA-RVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSY---- 171 (337)
Q Consensus 97 ~~~~~-~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~---- 171 (337)
..+|. +|+..|+..... ++.+...+-+.++++... ..++++|+|.
T Consensus 73 ~~~G~d~V~~~~~~~~~~-----------------~~~e~~a~al~~~i~~~~-------------p~lVL~~~t~~~~~ 122 (202)
T cd01714 73 LAMGADRAILVSDRAFAG-----------------ADTLATAKALAAAIKKIG-------------VDLILTGKQSIDGD 122 (202)
T ss_pred HHcCCCEEEEEecccccC-----------------CChHHHHHHHHHHHHHhC-------------CCEEEEcCCcccCC
Confidence 34566 688887765433 234556666666554432 5799999999
Q ss_pred hHHHHHHHHHhC
Q psy1220 172 GGMLAFWLRLKY 183 (337)
Q Consensus 172 GG~la~~~~~~~ 183 (337)
|+.++..++.+-
T Consensus 123 grdlaprlAarL 134 (202)
T cd01714 123 TGQVGPLLAELL 134 (202)
T ss_pred cCcHHHHHHHHh
Confidence 889999988764
No 252
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=31.98 E-value=64 Score=27.25 Aligned_cols=23 Identities=30% Similarity=0.275 Sum_probs=19.7
Q ss_pred CCEEEEecchhHHHHHHHHHhCC
Q psy1220 162 HPVIAFGGSYGGMLAFWLRLKYP 184 (337)
Q Consensus 162 ~~~il~G~S~GG~la~~~~~~~P 184 (337)
.+=++.|-|.|+.+|+.++..++
T Consensus 27 ~~d~i~GtSaGai~aa~~a~g~~ 49 (194)
T cd07207 27 LKKRVAGTSAGAITAALLALGYS 49 (194)
T ss_pred CcceEEEECHHHHHHHHHHcCCC
Confidence 45789999999999999997654
No 253
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=31.69 E-value=90 Score=25.93 Aligned_cols=49 Identities=27% Similarity=0.285 Sum_probs=29.6
Q ss_pred CCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHH
Q psy1220 100 SARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWL 179 (337)
Q Consensus 100 ~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~ 179 (337)
|..||++|.||=-.| .+ .++.+++.+... ...=.+++|+|.|=.=+..-
T Consensus 67 ~~~vi~Ld~~Gk~~s------------------Se----~fA~~l~~~~~~---------G~~i~f~IGG~~Gl~~~~~~ 115 (155)
T COG1576 67 GSYVVLLDIRGKALS------------------SE----EFADFLERLRDD---------GRDISFLIGGADGLSEAVKA 115 (155)
T ss_pred CCeEEEEecCCCcCC------------------hH----HHHHHHHHHHhc---------CCeEEEEEeCcccCCHHHHH
Confidence 457999999874322 33 345555555532 12347889999995444433
No 254
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=30.89 E-value=49 Score=30.09 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=16.9
Q ss_pred CCEEEEecchhHHHHHHHHH
Q psy1220 162 HPVIAFGGSYGGMLAFWLRL 181 (337)
Q Consensus 162 ~~~il~G~S~GG~la~~~~~ 181 (337)
.|-.++|||+|-+.|+..+-
T Consensus 82 ~p~~~~GhSlGE~aA~~~ag 101 (298)
T smart00827 82 RPDAVVGHSLGEIAAAYVAG 101 (298)
T ss_pred cccEEEecCHHHHHHHHHhC
Confidence 68899999999988877653
No 255
>PHA02595 tk.4 hypothetical protein; Provisional
Probab=30.82 E-value=31 Score=28.57 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=16.5
Q ss_pred cchhHHHHHHHHHhCCCc
Q psy1220 169 GSYGGMLAFWLRLKYPHI 186 (337)
Q Consensus 169 ~S~GG~la~~~~~~~P~~ 186 (337)
+.||+.+|..++.+||+.
T Consensus 29 g~mG~GIA~~~k~~~P~~ 46 (154)
T PHA02595 29 HTMGSGIAGQLAKAFPQI 46 (154)
T ss_pred CcCChHHHHHHHHHcChH
Confidence 589999999999999974
No 256
>PF14253 AbiH: Bacteriophage abortive infection AbiH
Probab=30.81 E-value=40 Score=30.26 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=12.3
Q ss_pred CCEEEEecchhHHHH
Q psy1220 162 HPVIAFGGSYGGMLA 176 (337)
Q Consensus 162 ~~~il~G~S~GG~la 176 (337)
..++++|||+|..=.
T Consensus 235 ~~I~i~GhSl~~~D~ 249 (270)
T PF14253_consen 235 DEIIIYGHSLGEVDY 249 (270)
T ss_pred CEEEEEeCCCchhhH
Confidence 689999999997533
No 257
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=30.40 E-value=67 Score=29.88 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=20.1
Q ss_pred CCEEEEecchhHHHHHHHHHhCC
Q psy1220 162 HPVIAFGGSYGGMLAFWLRLKYP 184 (337)
Q Consensus 162 ~~~il~G~S~GG~la~~~~~~~P 184 (337)
..=.+.|-|+|+.+++.++..++
T Consensus 43 ~~d~v~GtSaGAi~ga~ya~g~~ 65 (306)
T cd07225 43 PVDMVGGTSIGAFIGALYAEERN 65 (306)
T ss_pred CCCEEEEECHHHHHHHHHHcCCC
Confidence 56788999999999999998764
No 258
>PF03283 PAE: Pectinacetylesterase
Probab=28.45 E-value=1.4e+02 Score=28.46 Aligned_cols=30 Identities=30% Similarity=0.364 Sum_probs=21.7
Q ss_pred CCEEEEecchhHHHHHH----HHHhCCCceeEee
Q psy1220 162 HPVIAFGGSYGGMLAFW----LRLKYPHIVQGAL 191 (337)
Q Consensus 162 ~~~il~G~S~GG~la~~----~~~~~P~~v~~~v 191 (337)
++++|.|.|-||.=+.. ++..+|..++-..
T Consensus 156 ~~vlltG~SAGG~g~~~~~d~~~~~lp~~~~v~~ 189 (361)
T PF03283_consen 156 KQVLLTGCSAGGLGAILHADYVRDRLPSSVKVKC 189 (361)
T ss_pred ceEEEeccChHHHHHHHHHHHHHHHhccCceEEE
Confidence 68999999999976654 5677886444333
No 259
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=28.12 E-value=86 Score=26.07 Aligned_cols=24 Identities=25% Similarity=0.080 Sum_probs=20.7
Q ss_pred CCEEEEecchhHHHHHHHHHhCCC
Q psy1220 162 HPVIAFGGSYGGMLAFWLRLKYPH 185 (337)
Q Consensus 162 ~~~il~G~S~GG~la~~~~~~~P~ 185 (337)
..-.+.|-|.|+.+|+.++...+.
T Consensus 26 ~~d~v~GtSaGAi~aa~~a~g~~~ 49 (172)
T cd07198 26 LIDIIAGTSAGAIVAALLASGRDL 49 (172)
T ss_pred CCCEEEEECHHHHHHHHHHcCCCH
Confidence 477899999999999999987653
No 260
>PRK11460 putative hydrolase; Provisional
Probab=27.96 E-value=2.9e+02 Score=24.13 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=24.1
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEeccccccc
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGS 113 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~ 113 (337)
+.||+++||.....-.+..... +.+..++.+..+-....++-|.
T Consensus 148 ~~pvli~hG~~D~vvp~~~~~~-~~~~L~~~g~~~~~~~~~~~gH 191 (232)
T PRK11460 148 ATTIHLIHGGEDPVIDVAHAVA-AQEALISLGGDVTLDIVEDLGH 191 (232)
T ss_pred CCcEEEEecCCCCccCHHHHHH-HHHHHHHCCCCeEEEEECCCCC
Confidence 5689999998777554433222 2333344455555444444333
No 261
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=27.88 E-value=1.6e+02 Score=27.34 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=30.9
Q ss_pred HHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 94 ESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 94 ~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
...+++|+..|.+.|-+.+ | .++.-+.+++++++.++++.+.
T Consensus 158 k~Vk~fgadmvTiHlIsTd---P----------ki~D~p~~EAak~lEdvLqAVd 199 (403)
T COG2069 158 KCVKKFGADMVTIHLISTD---P----------KIKDTPAKEAAKTLEDVLQAVD 199 (403)
T ss_pred HHHHHhCCceEEEEeecCC---c----------cccCCCHHHHHHHHHHHHHhcC
Confidence 3557899999999886543 2 2334458889999998888776
No 262
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=26.91 E-value=3.2e+02 Score=23.06 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=24.9
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcE--EEecccccccCC
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARV--VLVEHRYYGSSL 115 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~v--i~~D~rg~G~S~ 115 (337)
..|++++||.....-.......+...|. +.|..+ +.+.--|||...
T Consensus 144 ~~P~li~hG~~D~~Vp~~~s~~~~~~L~-~~g~~~~~~~~p~~gH~~~~ 191 (213)
T PF00326_consen 144 KPPVLIIHGENDPRVPPSQSLRLYNALR-KAGKPVELLIFPGEGHGFGN 191 (213)
T ss_dssp GSEEEEEEETTBSSSTTHHHHHHHHHHH-HTTSSEEEEEETT-SSSTTS
T ss_pred CCCEEEEccCCCCccCHHHHHHHHHHHH-hcCCCEEEEEcCcCCCCCCC
Confidence 5799999997665444433333334444 445544 444444565443
No 263
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=26.58 E-value=67 Score=29.31 Aligned_cols=19 Identities=26% Similarity=0.195 Sum_probs=16.6
Q ss_pred CCEEEEecchhHHHHHHHH
Q psy1220 162 HPVIAFGGSYGGMLAFWLR 180 (337)
Q Consensus 162 ~~~il~G~S~GG~la~~~~ 180 (337)
.|..++|||+|-+.|+..+
T Consensus 76 ~P~~v~GhS~GE~aAa~~a 94 (295)
T TIGR03131 76 RPSAVAGYSVGEYAAAVVA 94 (295)
T ss_pred CCcEEeecCHHHHHHHHHh
Confidence 6899999999998887765
No 264
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=26.38 E-value=1e+02 Score=27.02 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=19.7
Q ss_pred CCEEEEecchhHHHHHHHHHhCC
Q psy1220 162 HPVIAFGGSYGGMLAFWLRLKYP 184 (337)
Q Consensus 162 ~~~il~G~S~GG~la~~~~~~~P 184 (337)
.+-.+.|-|.|+.+|+.++..++
T Consensus 28 ~~~~i~GtSaGAi~aa~~a~g~~ 50 (221)
T cd07210 28 EPSAISGTSAGALVGGLFASGIS 50 (221)
T ss_pred CceEEEEeCHHHHHHHHHHcCCC
Confidence 45679999999999999997654
No 265
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=26.34 E-value=47 Score=30.95 Aligned_cols=21 Identities=33% Similarity=0.249 Sum_probs=17.7
Q ss_pred EEEEecchhHHHHHHHHHhCC
Q psy1220 164 VIAFGGSYGGMLAFWLRLKYP 184 (337)
Q Consensus 164 ~il~G~S~GG~la~~~~~~~P 184 (337)
=.+.|.|.||.+|+.++..++
T Consensus 34 D~i~GTStGgiIA~~la~g~s 54 (312)
T cd07212 34 DWIAGTSTGGILALALLHGKS 54 (312)
T ss_pred cEEEeeChHHHHHHHHHcCCC
Confidence 368999999999999997553
No 266
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=26.05 E-value=1.9e+02 Score=24.08 Aligned_cols=51 Identities=12% Similarity=0.167 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHHHHhCCCceeEeeec
Q psy1220 133 VAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALAS 193 (337)
Q Consensus 133 ~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~~~~~P~~v~~~v~~ 193 (337)
.++..+++.++++.++.+ ..++.++|-|-.|..-+.+.---++.+..++=.
T Consensus 50 ~~~~~~~l~~~L~~~~~~----------gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~ 100 (160)
T PF08484_consen 50 VEQSKAELREFLEKLKAE----------GKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDD 100 (160)
T ss_dssp HHHHHHHHHHHHHHHHHT----------T--EEEE---SHHHHHHHHHT--TTTS--EEES
T ss_pred HHHHHHHHHHHHHHHHHc----------CCEEEEECcchHHHHHHHHhCCCcceeEEEEeC
Confidence 455666667777766654 268999999999999888887777777766643
No 267
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=25.61 E-value=50 Score=30.64 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=16.0
Q ss_pred CCEEEEecchhHHHHHHHH
Q psy1220 162 HPVIAFGGSYGGMLAFWLR 180 (337)
Q Consensus 162 ~~~il~G~S~GG~la~~~~ 180 (337)
.|-.++|||+|=+.|+..+
T Consensus 84 ~P~~v~GhSlGE~aA~~aa 102 (318)
T PF00698_consen 84 KPDAVIGHSLGEYAALVAA 102 (318)
T ss_dssp CESEEEESTTHHHHHHHHT
T ss_pred ccceeeccchhhHHHHHHC
Confidence 7899999999988777554
No 268
>PF10081 Abhydrolase_9: Alpha/beta-hydrolase family; InterPro: IPR012037 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.66 E-value=5.6e+02 Score=23.65 Aligned_cols=43 Identities=21% Similarity=0.137 Sum_probs=30.5
Q ss_pred cCCCCCCCEEEEecchhHHHHHHHHHhCC---CceeEeeecCcccc
Q psy1220 156 GAAFKPHPVIAFGGSYGGMLAFWLRLKYP---HIVQGALASSAPMF 198 (337)
Q Consensus 156 ~~~~~~~~~il~G~S~GG~la~~~~~~~P---~~v~~~v~~sap~~ 198 (337)
++.....|++|+|.|+|++-+.......+ +.++|++.+..|..
T Consensus 103 lP~~~RPkL~l~GeSLGa~g~~~af~~~~~~~~~vdGalw~GpP~~ 148 (289)
T PF10081_consen 103 LPEDRRPKLYLYGESLGAYGGEAAFDGLDDLRDRVDGALWVGPPFF 148 (289)
T ss_pred CCcccCCeEEEeccCccccchhhhhccHHHhhhhcceEEEeCCCCC
Confidence 44445578999999999887766543332 45889888887753
No 269
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=24.40 E-value=2.8e+02 Score=20.15 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=19.5
Q ss_pred CCEEEEecchhHHHHHHHHHhCCC
Q psy1220 162 HPVIAFGGSYGGMLAFWLRLKYPH 185 (337)
Q Consensus 162 ~~~il~G~S~GG~la~~~~~~~P~ 185 (337)
+++.++|.|-|=.+|..++..+-.
T Consensus 40 K~VLViGaStGyGLAsRIa~aFg~ 63 (78)
T PF12242_consen 40 KKVLVIGASTGYGLASRIAAAFGA 63 (78)
T ss_dssp SEEEEES-SSHHHHHHHHHHHHCC
T ss_pred ceEEEEecCCcccHHHHHHHHhcC
Confidence 689999999999999888877643
No 270
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=24.31 E-value=3.1e+02 Score=25.21 Aligned_cols=82 Identities=21% Similarity=0.265 Sum_probs=49.9
Q ss_pred HHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecc
Q psy1220 91 FLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGS 170 (337)
Q Consensus 91 ~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S 170 (337)
++.++.++.|.+||++=||---.|. .+ .. -.++. ..+|...+.++++.. .+..++.++=|+
T Consensus 39 ~i~~ie~kr~srvI~~Ihrqe~~~~-~g-iP-----i~~~I----~i~dse~v~raI~~~--------~~~~~IdLii~T 99 (285)
T PF01972_consen 39 LIREIEEKRGSRVITLIHRQERVSF-LG-IP-----IYRYI----DIDDSEFVLRAIREA--------PKDKPIDLIIHT 99 (285)
T ss_pred HHHHHHHHhCCEEEEEEEeccccce-ec-cc-----cceeE----cHhhHHHHHHHHHhc--------CCCCceEEEEEC
Confidence 4556667788899998876311111 00 00 01111 346777777877742 133578899999
Q ss_pred hhHHHHHHH-----HHhCCCceeEee
Q psy1220 171 YGGMLAFWL-----RLKYPHIVQGAL 191 (337)
Q Consensus 171 ~GG~la~~~-----~~~~P~~v~~~v 191 (337)
-||.+-+.. ..++|..+...|
T Consensus 100 pGG~v~AA~~I~~~l~~~~~~v~v~V 125 (285)
T PF01972_consen 100 PGGLVDAAEQIARALREHPAKVTVIV 125 (285)
T ss_pred CCCcHHHHHHHHHHHHhCCCCEEEEE
Confidence 999886543 356888877766
No 271
>KOG2521|consensus
Probab=23.99 E-value=2.8e+02 Score=26.42 Aligned_cols=109 Identities=19% Similarity=0.117 Sum_probs=60.2
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~ 148 (337)
..||+.+.|+.|..+.+... ...+-++.|+.++.+-.+-+-...+. +...++. .+....+..+.
T Consensus 38 ~k~Iv~~~gWag~~~r~l~k---y~~~Yq~~g~~~~~~tap~~~~~~~~---------s~~~~sl----~~~~~~l~~L~ 101 (350)
T KOG2521|consen 38 EKPIVVLLGWAGAIDRNLMK---YSKIYQDKGYIVVRITAPCPSVFLSA---------SRRILSL----SLASTRLSELL 101 (350)
T ss_pred cccEEEEeeeccccchhHHH---HHHHHhcCCceEEEecCccccccccc---------ccccchh----hHHHHHHHHHh
Confidence 45999999988886664332 23333455777777766654333221 1222323 33333333333
Q ss_pred hhhhhhccCCCCCCCEEEEecchhHHHH---HHHHHh-C-C---CceeEeeecCccccc
Q psy1220 149 DASRLRIGAAFKPHPVIAFGGSYGGMLA---FWLRLK-Y-P---HIVQGALASSAPMFQ 199 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~il~G~S~GG~la---~~~~~~-~-P---~~v~~~v~~sap~~~ 199 (337)
.. + ..+..|++.---|+||... .|++.. . | +...+++..|+|...
T Consensus 102 ~~-----~-~~~~~pi~fh~FS~ng~~~~~si~~~~~~~~~~~~~~~~~~~fdS~p~~~ 154 (350)
T KOG2521|consen 102 SD-----Y-NSDPCPIIFHVFSGNGVRLMYSISLQLIKHEPKAAQLSGGIIFDSAPARS 154 (350)
T ss_pred hh-----c-cCCcCceEEEEecCCceeehHHHHHHHhhcCchhHhhcCCceEecccccc
Confidence 32 2 1344688888889998654 333322 2 3 345678877877663
No 272
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=23.65 E-value=99 Score=23.56 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=25.0
Q ss_pred EEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecc
Q psy1220 72 VFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEH 108 (337)
Q Consensus 72 ivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~ 108 (337)
|+++.|-+|+.-+. +...|++++|+.++..|.
T Consensus 1 vI~I~G~~gsGKST-----~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKST-----LAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHH-----HHHHHHHHHTCEEEEEHH
T ss_pred CEEEECCCCCCHHH-----HHHHHHHHHCCeEEEecc
Confidence 57888888774332 467799999999999998
No 273
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=22.47 E-value=1.4e+02 Score=24.76 Aligned_cols=52 Identities=25% Similarity=0.358 Sum_probs=26.9
Q ss_pred CCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHHH
Q psy1220 100 SARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWL 179 (337)
Q Consensus 100 ~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~~ 179 (337)
+..+|++|-+|---| .+ ++++.++..... - ...=++++|+|+| +.-.+
T Consensus 67 ~~~~i~Ld~~Gk~~s------------------S~----~fA~~l~~~~~~-----g---~~~i~F~IGG~~G--~~~~~ 114 (155)
T PF02590_consen 67 NDYVILLDERGKQLS------------------SE----EFAKKLERWMNQ-----G---KSDIVFIIGGADG--LSEEV 114 (155)
T ss_dssp TSEEEEE-TTSEE--------------------HH----HHHHHHHHHHHT-----T---S-EEEEEE-BTTB----HHH
T ss_pred CCEEEEEcCCCccCC------------------hH----HHHHHHHHHHhc-----C---CceEEEEEecCCC--CCHHH
Confidence 567889998875332 33 445555555432 0 1134789999998 55555
Q ss_pred HHhC
Q psy1220 180 RLKY 183 (337)
Q Consensus 180 ~~~~ 183 (337)
..+.
T Consensus 115 ~~~a 118 (155)
T PF02590_consen 115 RKRA 118 (155)
T ss_dssp HHH-
T ss_pred Hhhc
Confidence 5543
No 274
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=21.95 E-value=5.7e+02 Score=23.10 Aligned_cols=75 Identities=21% Similarity=0.156 Sum_probs=49.9
Q ss_pred cEEEeccc---ccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCEEEEecchhHHHHHH
Q psy1220 102 RVVLVEHR---YYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFW 178 (337)
Q Consensus 102 ~vi~~D~r---g~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~il~G~S~GG~la~~ 178 (337)
.||++|.. |.|+|-- .+..+.+.++|+..... .......-.++.|+|.=..-+..
T Consensus 161 ~vIAYEPvWAIGTG~~at-----------------~~~a~~v~~~Ir~~~~~-----~~~~~~~v~IlYGGSV~~~N~~e 218 (251)
T COG0149 161 IVIAYEPVWAIGTGKSAS-----------------PADAEEVHAFIRAVLAE-----LFGAEEKVRILYGGSVKPGNAAE 218 (251)
T ss_pred eEEEECCHHHhcCCCCCC-----------------HHHHHHHHHHHHHHHHH-----hcCCCCCeEEEEeCCcChhHHHH
Confidence 79999987 7777642 23456667777766643 11112345778999988777777
Q ss_pred HHHhCCCceeEeeecCcccccc
Q psy1220 179 LRLKYPHIVQGALASSAPMFQT 200 (337)
Q Consensus 179 ~~~~~P~~v~~~v~~sap~~~~ 200 (337)
++.+ | .++|+.+.+|.+.+.
T Consensus 219 ~~~~-~-~idG~LVGgAslka~ 238 (251)
T COG0149 219 LAAQ-P-DIDGALVGGASLKAD 238 (251)
T ss_pred HhcC-C-CCCeEEEcceeecch
Confidence 6653 3 489999888877554
No 275
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=21.74 E-value=1.3e+02 Score=25.16 Aligned_cols=24 Identities=17% Similarity=0.092 Sum_probs=20.6
Q ss_pred CCEEEEecchhHHHHHHHHHhCCC
Q psy1220 162 HPVIAFGGSYGGMLAFWLRLKYPH 185 (337)
Q Consensus 162 ~~~il~G~S~GG~la~~~~~~~P~ 185 (337)
..=.+.|-|.|+.+|+.++..++.
T Consensus 28 ~~d~i~GtSaGAi~aa~~a~g~~~ 51 (175)
T cd07228 28 EIDIIAGSSIGALVGALYAAGHLD 51 (175)
T ss_pred CeeEEEEeCHHHHHHHHHHcCCCH
Confidence 467899999999999999987664
No 276
>KOG3079|consensus
Probab=21.42 E-value=1.5e+02 Score=25.48 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=20.3
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCC
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSA 101 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~ 101 (337)
..||||+.||+|+.... .-..+++.+++
T Consensus 7 ~~~IifVlGGPGsgKgT-----qC~kiv~ky~f 34 (195)
T KOG3079|consen 7 KPPIIFVLGGPGSGKGT-----QCEKIVEKYGF 34 (195)
T ss_pred CCCEEEEEcCCCCCcch-----HHHHHHHHcCc
Confidence 67999999999985432 24567777764
No 277
>PRK10279 hypothetical protein; Provisional
Probab=21.11 E-value=1.2e+02 Score=28.14 Aligned_cols=24 Identities=17% Similarity=0.045 Sum_probs=20.8
Q ss_pred CCEEEEecchhHHHHHHHHHhCCC
Q psy1220 162 HPVIAFGGSYGGMLAFWLRLKYPH 185 (337)
Q Consensus 162 ~~~il~G~S~GG~la~~~~~~~P~ 185 (337)
.+-.+.|.|+|+.+++.++....+
T Consensus 33 ~~d~i~GtS~GAlvga~yA~g~~~ 56 (300)
T PRK10279 33 EIDIVAGCSIGSLVGAAYACDRLS 56 (300)
T ss_pred CcCEEEEEcHHHHHHHHHHcCChH
Confidence 578899999999999999987654
No 278
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=20.67 E-value=1.3e+02 Score=27.36 Aligned_cols=23 Identities=13% Similarity=-0.083 Sum_probs=19.7
Q ss_pred CCEEEEecchhHHHHHHHHHhCC
Q psy1220 162 HPVIAFGGSYGGMLAFWLRLKYP 184 (337)
Q Consensus 162 ~~~il~G~S~GG~la~~~~~~~P 184 (337)
..=.+.|-|+|+.+++.++..+.
T Consensus 38 ~~d~v~GtSaGAiiga~ya~g~~ 60 (269)
T cd07227 38 PIDAIGGTSIGSFVGGLYAREAD 60 (269)
T ss_pred CccEEEEECHHHHHHHHHHcCCc
Confidence 46678999999999999998753
No 279
>PHA02857 monoglyceride lipase; Provisional
Probab=20.57 E-value=3.5e+02 Score=23.78 Aligned_cols=62 Identities=8% Similarity=0.080 Sum_probs=36.4
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhc--CCcEEEecccccccCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHH
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRF--SARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQS 146 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~--~~~vi~~D~rg~G~S~~~~~~s~~~~~~~~~~t~~~~~~D~~~~i~~ 146 (337)
..|++++||.....-.... ...+++.. +..+..++.-||---.-. . -..++..+|+.++++.
T Consensus 209 ~~Pvliv~G~~D~i~~~~~----~~~l~~~~~~~~~~~~~~~~gH~~~~e~--~----------~~~~~~~~~~~~~l~~ 272 (276)
T PHA02857 209 KTPILILQGTNNEISDVSG----AYYFMQHANCNREIKIYEGAKHHLHKET--D----------EVKKSVMKEIETWIFN 272 (276)
T ss_pred CCCEEEEecCCCCcCChHH----HHHHHHHccCCceEEEeCCCcccccCCc--h----------hHHHHHHHHHHHHHHH
Confidence 5799999998876544332 34455443 345666666566432110 0 0146788888887765
No 280
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven
Probab=20.57 E-value=62 Score=26.81 Aligned_cols=17 Identities=29% Similarity=0.387 Sum_probs=15.4
Q ss_pred cchh-HHHHHHHHHhCCC
Q psy1220 169 GSYG-GMLAFWLRLKYPH 185 (337)
Q Consensus 169 ~S~G-G~la~~~~~~~P~ 185 (337)
++|| |.++..++.++|+
T Consensus 30 G~WG~gGia~al~~k~p~ 47 (152)
T cd03331 30 GHWGRGGLFTALEKRSDQ 47 (152)
T ss_pred CCCCcchHHHHHHHhCCc
Confidence 5799 7999999999996
No 281
>COG0400 Predicted esterase [General function prediction only]
Probab=20.54 E-value=4.6e+02 Score=22.83 Aligned_cols=46 Identities=28% Similarity=0.352 Sum_probs=29.4
Q ss_pred CCcEEEEeCCCCCccchhhhhHHHHHHHHhcCCcEEEecccccccCCC
Q psy1220 69 GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLP 116 (337)
Q Consensus 69 ~~pivl~hGg~g~~~~~~~~~~~~~~la~~~~~~vi~~D~rg~G~S~~ 116 (337)
+.||++.||.....-...... -..+..+..|+.|-.-++. -|.+.+
T Consensus 146 ~~pill~hG~~Dpvvp~~~~~-~l~~~l~~~g~~v~~~~~~-~GH~i~ 191 (207)
T COG0400 146 GTPILLSHGTEDPVVPLALAE-ALAEYLTASGADVEVRWHE-GGHEIP 191 (207)
T ss_pred CCeEEEeccCcCCccCHHHHH-HHHHHHHHcCCCEEEEEec-CCCcCC
Confidence 679999999887653332211 2344444578888888887 455543
No 282
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=20.45 E-value=1.1e+02 Score=25.46 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=18.6
Q ss_pred CEEEEecchhHHHHHHHHHhCC
Q psy1220 163 PVIAFGGSYGGMLAFWLRLKYP 184 (337)
Q Consensus 163 ~~il~G~S~GG~la~~~~~~~P 184 (337)
+++++|.+.+|+.++..+.+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~ 22 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPG 22 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT
T ss_pred CEEEEecHHHHHHHHHHHhcCC
Confidence 4789999999999999888443
Done!