RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1220
(337 letters)
>gnl|CDD|218645 pfam05577, Peptidase_S28, Serine carboxypeptidase S28. These
serine proteases include several eukaryotic enzymes such
as lysosomal Pro-X carboxypeptidase,
dipeptidyl-peptidase II, and thymus-specific serine
peptidase.
Length = 433
Score = 192 bits (490), Expect = 7e-58
Identities = 82/260 (31%), Positives = 114/260 (43%), Gaps = 13/260 (5%)
Query: 40 AKLDHFTYVSNQTFPLKYLINDEFWDEDGGAPVFFYCGNEDAIETFAENLGFLWESAKRF 99
KLDHF +N+TF +Y ND+ + G P+F G E G + AK F
Sbjct: 1 QKLDHFDPSNNRTFQQRYFYNDQHYR--NGGPIFLMIGGEGPESASWVRNGHWLDLAKEF 58
Query: 100 SARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAF 159
A V +EHR+YG S P G S ++ R YL+ Q LAD I+++ ++ G
Sbjct: 59 GALVFSLEHRFYGQSKPIGDLSTANLR---YLSSLQALADVASFIKAM---NQKFNG--L 110
Query: 160 KPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTNDLAPCDIYYKEVTKIYRD 219
I FGGSY G LA W R KYPH+V GA+ASSAP+ D Y V
Sbjct: 111 SSSKWITFGGSYSGSLAAWARKKYPHLVVGAVASSAPLLAKVDFKE---YNMVVETSLAQ 167
Query: 220 VSPKCEENIRNSWTFINTELQTDSGRVEFSREWNLCSSLKTQVDVAIFKRYLSDMYTTMA 279
+C + + N + + L T GR S+ LC L D+ I + +
Sbjct: 168 TGGECYDAVENGFAEVEELLLTKEGRQALSKLLQLCPPLNVTTDLDILNFFSNIYSPFQG 227
Query: 280 MTNYPYPSNFLTPLPGNPVK 299
+ Y Y + L G +
Sbjct: 228 VVQYTYDGQGNSTLNGYSIP 247
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 44.0 bits (104), Expect = 2e-05
Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 23/112 (20%)
Query: 96 AKRFSA--RVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRL 153
A+ +A RV+ + +G S ++ AD ++
Sbjct: 18 AEALAAGYRVLAPDLPGHG---------DSDGPPRTPYSLEDDAADLAALLD-------- 60
Query: 154 RIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTNDLAP 205
A PV+ G S GG +A + P V G + S P+ +L
Sbjct: 61 ----ALGLGPVVLVGHSLGGAVALAAAARRPERVAGLVLISPPLRDLEELLA 108
>gnl|CDD|201306 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 226
Score = 42.1 bits (99), Expect = 1e-04
Identities = 25/185 (13%), Positives = 43/185 (23%), Gaps = 32/185 (17%)
Query: 102 RVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKP 161
V+ + R +G S S P+ D ++ +L
Sbjct: 2 DVIAFDLRGFGRS--------SPPKDFADYRFDDLAEDLEALLDAL------------GL 41
Query: 162 HPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTNDLAPCDIYYKEVTKIYRDVS 221
V G S GG++A KYP V+ + + +
Sbjct: 42 DKVNLVGHSMGGLIALAYAAKYPDRVKALVLVGTV---HPAGLSSPLTPRGNLLGLL--- 95
Query: 222 PKCEENIRNSWTFINTELQTDSGRVEFSREWNLCSSLKTQVDVAIFKRYLSDMYTTMAMT 281
+N N L + + + S Q + T
Sbjct: 96 ---LDNFFNRLYDSVEALLGRAIKQFQALGRPFVSDFLKQ---FELSSLIRFGETLALDG 149
Query: 282 NYPYP 286
Y
Sbjct: 150 LLGYA 154
>gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta
hydrolase superfamily) [General function prediction
only].
Length = 282
Score = 40.8 bits (94), Expect = 6e-04
Identities = 27/120 (22%), Positives = 40/120 (33%), Gaps = 26/120 (21%)
Query: 77 GNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQT 136
G + + L A R+ RV+ + R +G S P G A
Sbjct: 29 GFPGSSSVWRPVFKVLPALAARY--RVIAPDLRGHGRSDPAGY---------SLSAYADD 77
Query: 137 LADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAP 196
LA +D A V+ G S GG +A L L++P V+G +
Sbjct: 78 LAALLD---------------ALGLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPA 122
>gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family. This family
contains a diverse range of alpha/beta hydrolase
enzymes.
Length = 145
Score = 37.7 bits (88), Expect = 0.002
Identities = 25/133 (18%), Positives = 43/133 (32%), Gaps = 39/133 (29%)
Query: 72 VFF--YCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSG 129
V G+ +A A L +++ + VV V++ +G+SL G
Sbjct: 3 VLLHGAGGDPEAYAPLARAL-----ASRGY--NVVAVDYPGHGASL-------------G 42
Query: 130 YLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQG 189
LAD A P ++ G S GG +A L + P +
Sbjct: 43 APDAEAVLAD-----------------APLDPERIVLVGHSLGGGVALLLAARDPRVKAA 85
Query: 190 ALASSAPMFQTND 202
+ ++ D
Sbjct: 86 VVLAAGDPPDALD 98
>gnl|CDD|225176 COG2267, PldB, Lysophospholipase [Lipid metabolism].
Length = 298
Score = 35.8 bits (83), Expect = 0.021
Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 24/120 (20%)
Query: 85 FAENLGFLWESAKRFSAR---VVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFV 141
E+ G E A +AR V ++ R +G S G++ AD+V
Sbjct: 43 LGEHSGRYEELADDLAARGFDVYALDLRGHG---------RSPRGQRGHVDS---FADYV 90
Query: 142 DVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLA--FWLRLKYPHIVQGALASSAPMFQ 199
D + + + PV G S GG++A + R YP + G + SS P
Sbjct: 91 DDLDAFVETIAEPDPGL----PVFLLGHSMGGLIALLYLAR--YPPRIDGLVLSS-PALG 143
>gnl|CDD|236565 PRK09557, PRK09557, fructokinase; Reviewed.
Length = 301
Score = 33.1 bits (76), Expect = 0.19
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 54 PLKYLINDEFWDEDGGAPVFFYCGNEDAIETFAENLGF 91
PL ++ DE + V YCG + IETF GF
Sbjct: 159 PLPWMDEDELRYRN---EVPCYCGKQGCIETFISGTGF 193
>gnl|CDD|225856 COG3319, COG3319, Thioesterase domains of type I polyketide
synthases or non-ribosomal peptide synthetases
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 257
Score = 32.4 bits (74), Expect = 0.22
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 11/70 (15%)
Query: 109 RYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPH-PVIAF 167
G LP L +P +L D + R++ P P +
Sbjct: 21 AALGPLLPV--YGLQAPGYGAGEQPFASLDDMAA--AYVAAIRRVQ------PEGPYVLL 70
Query: 168 GGSYGGMLAF 177
G S GG +AF
Sbjct: 71 GWSLGGAVAF 80
>gnl|CDD|215216 PLN02385, PLN02385, hydrolase; alpha/beta fold family protein.
Length = 349
Score = 32.4 bits (74), Expect = 0.27
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 124 SPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKY 183
S L GY+ L D DVI E S+++ F+ P FG S GG +A + LK
Sbjct: 129 SEGLHGYIPSFDDLVD--DVI---EHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQ 183
Query: 184 PHIVQGALASSAPMFQ-TNDLAP 205
P+ GA+ APM + +D+ P
Sbjct: 184 PNAWDGAIL-VAPMCKIADDVVP 205
>gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family.
Length = 212
Score = 31.8 bits (73), Expect = 0.34
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 16/64 (25%)
Query: 136 TLADFVDVIQSLE-----DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGA 190
DF+ + L D RL +GGSYGG L + P + + A
Sbjct: 44 EFDDFIAAAEYLIAQGYVDPDRL-----------AIWGGSYGGYLTGAALNQRPDLFKAA 92
Query: 191 LASS 194
+A
Sbjct: 93 VAVV 96
>gnl|CDD|225749 COG3208, GrsT, Predicted thioesterase involved in non-ribosomal
peptide biosynthesis [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 244
Score = 31.5 bits (72), Expect = 0.46
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 140 FVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKY 183
+ I+SL D + P FG S G MLAF + +
Sbjct: 52 LLTDIESLADELANELLPPLLDAPFALFGHSMGAMLAFEVARRL 95
>gnl|CDD|224932 COG2021, MET2, Homoserine acetyltransferase [Amino acid transport
and metabolism].
Length = 368
Score = 31.5 bits (72), Expect = 0.54
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 168 GGSYGGMLAFWLRLKYPHIVQGA--LASSAP 196
GGS GGM A ++YP V+ A +A++A
Sbjct: 153 GGSMGGMQALEWAIRYPDRVRRAIPIATAAR 183
>gnl|CDD|220999 pfam11144, DUF2920, Protein of unknown function (DUF2920). This
bacterial family of proteins has no known function.
Length = 403
Score = 31.5 bits (72), Expect = 0.62
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 142 DVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKY-PHIVQGALASS 194
D+I +L+ + R PVI G SYGG LA L K P V G + +S
Sbjct: 165 DIINALKYL-KKRFPKFGGNLPVILIGSSYGGYLAN-LIAKIAPWYVDGVIDNS 216
>gnl|CDD|223477 COG0400, COG0400, Predicted esterase [General function prediction
only].
Length = 207
Score = 30.7 bits (70), Expect = 0.79
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 12/66 (18%)
Query: 134 AQTLADFV-DVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALA 192
+ LA+F+ ++ + +I G S G +A L L P + GA+
Sbjct: 80 TEKLAEFLEELAEEYG----------IDSSRIILIGFSQGANIALSLGLTLPGLFAGAIL 129
Query: 193 SSAPMF 198
S M
Sbjct: 130 FS-GML 134
>gnl|CDD|235859 PRK06765, PRK06765, homoserine O-acetyltransferase; Provisional.
Length = 389
Score = 30.8 bits (70), Expect = 1.0
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 136 TLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQ 188
T+ DFV V + L + L I + H V+ G S GGM A + YPH+V+
Sbjct: 142 TILDFVRVQKELIKS--LGIA---RLHAVM--GPSMGGMQAQEWAVHYPHMVE 187
>gnl|CDD|216940 pfam02230, Abhydrolase_2, Phospholipase/Carboxylesterase. This
family consists of both phospholipases and
carboxylesterases with broad substrate specificity, and
is structurally related to alpha/beta hydrolases
pfam00561.
Length = 213
Score = 30.4 bits (69), Expect = 1.0
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 16/82 (19%)
Query: 123 SSPRLSGYLTVAQTLADFVDVIQSLE-DASRLRIGAAFKPHPVIAFGG-SYGGMLAFWLR 180
+S +G A+T+ + +D ASR I GG S G +A +
Sbjct: 73 ASEDEAGIKNSAETIEELIDAELKTGIPASR------------IIIGGFSQGAAVALYTA 120
Query: 181 LKYPHIVQGALASS--APMFQT 200
L P + G +A S P+ Q
Sbjct: 121 LTSPQPLGGIIAFSGALPLPQK 142
>gnl|CDD|114306 pfam05576, Peptidase_S37, PS-10 peptidase S37. These serine
proteases have been found in Streptomyces species.
Length = 448
Score = 30.9 bits (69), Expect = 1.0
Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 27/134 (20%)
Query: 66 EDGGAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSP 125
+D P FY G + + E + V +E+RY+ S P P S
Sbjct: 59 KDVNRPTVFYTGGYNVSTNPSRR-----EPTQIVDGNQVSMEYRYFTPSRP-APADWSK- 111
Query: 126 RLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKP---HPVIAFGGSYGGMLAFWLRLK 182
+D+ Q+ D R I A KP I+ GGS GGM A +
Sbjct: 112 ---------------LDIWQAASDQHR--IFKALKPLYSKNWISTGGSKGGMTATYYERF 154
Query: 183 YPHIVQGALASSAP 196
YP + G +A AP
Sbjct: 155 YPRDMDGVVAYVAP 168
>gnl|CDD|180488 PRK06249, PRK06249, 2-dehydropantoate 2-reductase; Provisional.
Length = 313
Score = 29.9 bits (68), Expect = 1.6
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 17/53 (32%)
Query: 149 DASRLRIGAAFKPHPVI---AFGGSYGGMLA-------FWLRLKYPHIVQGAL 191
D+ RIG +I A GG YG MLA F LR Y + + L
Sbjct: 2 DSETPRIG-------IIGTGAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGL 47
>gnl|CDD|234315 TIGR03695, menH_SHCHC,
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
synthase. This protein catalyzes the formation of
SHCHC, or (1 R,6
R)-2-succinyl-6-hydroxy-2,
4-cyclohexadiene-1-carboxylate, by elmination of
pyruvate from
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
carboxylate (SEPHCHC). Note that SHCHC synthase activity
previously was attributed to MenD, which in fact is
SEPHCHC synthase [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 252
Score = 29.5 bits (67), Expect = 2.0
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 146 SLEDASRL---RIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGA-LASSAPMFQTN 201
E+ ++L + P G S GG +A + L+YP VQG L S +P T
Sbjct: 52 DFEEIAQLLLATLLDQLGIEPFFLVGYSMGGRIALYYALQYPERVQGLILESGSPGLATE 111
Query: 202 D 202
+
Sbjct: 112 E 112
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 30.2 bits (68), Expect = 2.1
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 89 LGFLWESAKRFSARVVLVEHRYYGSSLPFG------PKSLSSPRLSGYLTVAQTLADFVD 142
LG + A+ + + L R LP P ++ RL G + V ++LA
Sbjct: 16 LGGVAIRARAGTGKTALA--RALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQR 73
Query: 143 VIQS 146
V Q
Sbjct: 74 VTQP 77
>gnl|CDD|188121 TIGR01250, pro_imino_pep_2, proline-specific peptidase, Bacillus
coagulans-type subfamily. This model describes a
subfamily of the alpha/beta fold family of hydrolases.
Characterized members include prolinases (Pro-Xaa
dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC
3.4.11.5), and a leucyl aminopeptidase.
Length = 289
Score = 29.7 bits (67), Expect = 2.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 167 FGGSYGGMLAFWLRLKYPHIVQGALASS 194
G S+GGMLA LKY ++G + SS
Sbjct: 102 LGHSWGGMLAQEYALKYGQHLKGLIISS 129
>gnl|CDD|131480 TIGR02427, protocat_pcaD, 3-oxoadipate enol-lactonase. Members of
this family are 3-oxoadipate enol-lactonase. Note that
the substrate is known as 3-oxoadipate enol-lactone,
2-oxo-2,3-dihydrofuran-5-acetate,
4,5-Dihydro-5-oxofuran-2-acetate, and
5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the
catalyzes the fourth step in the protocatechuate
degradation to beta-ketoadipate and then to succinyl-CoA
and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate,
and vanillate all can be converted in one step to
protocatechuate. This enzyme also acts in catechol
degradation. In genomes that catabolize both catechol
and protocatechuate, two forms of this enzyme may be
found. All members of the seed alignment for this model
were chosen from within protocatechuate degradation
operons of at least three genes of the pathway, from
genomes with the complete pathway through
beta-ketoadipate [Energy metabolism, Other].
Length = 251
Score = 29.2 bits (66), Expect = 2.9
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 27/104 (25%)
Query: 102 RVVLVEHRYYGSS-LPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFK 160
RV+ + R +G S P GP S+ + LAD DV+ L+ +G
Sbjct: 41 RVLRYDKRGHGLSDAPEGPYSI------------EDLAD--DVLALLD-----HLGIER- 80
Query: 161 PHPVIAFGG-SYGGMLAFWLRLKYPHIVQG-ALASSAPMFQTND 202
F G S GG++A L + P V+ L+++A T +
Sbjct: 81 ----AVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPE 120
>gnl|CDD|165193 PHA02857, PHA02857, monoglyceride lipase; Provisional.
Length = 276
Score = 29.1 bits (65), Expect = 3.1
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 163 PVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTNDLAPCDI 208
PV G S G ++ K P++ + S P+ + ++
Sbjct: 98 PVFLLGHSMGATISILAAYKNPNLFTAMILMS-PLVNAEAVPRLNL 142
>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional.
Length = 931
Score = 28.7 bits (65), Expect = 5.5
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 11/31 (35%)
Query: 132 TVAQ--------TLADFVDVIQSLEDASRLR 154
AQ T+ DF D +QS E RL+
Sbjct: 587 DTAQKRDLSDPKTIEDFADAVQSPE---RLK 614
>gnl|CDD|235130 PRK03557, PRK03557, zinc transporter ZitB; Provisional.
Length = 312
Score = 28.6 bits (64), Expect = 5.5
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 21/66 (31%)
Query: 129 GYLTVAQTLADFVDVIQSL--------EDASRLRIGAAFKPHPV-------IAFGGSYGG 173
G+L + TLA FV+ I + E R P PV IA G
Sbjct: 82 GWLRLT-TLAAFVNAIALVVITILIVWEAIERF-----RTPRPVAGGMMMAIAVAGLLAN 135
Query: 174 MLAFWL 179
+L+FWL
Sbjct: 136 ILSFWL 141
>gnl|CDD|178578 PLN03000, PLN03000, amine oxidase.
Length = 881
Score = 28.4 bits (63), Expect = 5.8
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 18 GVVLSSF--ILSTDAYTYETKFFDAKLDHFTYVSNQTFPLKYLINDEFWDED-----GGA 70
G L +F + D T E F+ L + Y +N K ++ FWD+D GG
Sbjct: 316 GAALETFRQVSGNDVATEEMGLFNWHLANLEY-ANAGLVSK--LSLAFWDQDDPYDMGGD 372
Query: 71 PVFFYCGNEDAIETFAENLGFLWE 94
F GN ++ AEN+ L+E
Sbjct: 373 HCFLPGGNGRLVQALAENVPILYE 396
>gnl|CDD|214007 cd12808, Esterase_713_like-1, Uncharacterized enzymes similar to
novel bacterial esterase that cleaves esters on
halogenated cyclic compounds. This family contains
uncharacterized proteins similar to a novel bacterial
esterase (Alcaligenes esterase 713) with the alpha/beta
hydrolase fold but does not contain the GXSXXG
pentapeptide around the active site serine residue as
commonly seen in other enzymes of this class. Esterase
713 shows negligible sequence homology to other esterase
and lipase enzymes. It is active as a dimer and cleaves
esters on halogenated cyclic compounds though its
natural substrate is unknown.
Length = 309
Score = 28.0 bits (63), Expect = 6.8
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 19/75 (25%)
Query: 125 PRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYP 184
PR G T A TLA + ++ R+G P I S GG AF P
Sbjct: 167 PRWLG--TDALTLAAYDALLD--------RVG------PCIVVAHSQGGGFAFEAARARP 210
Query: 185 HIVQGALA---SSAP 196
+V+ +A S AP
Sbjct: 211 DLVRAVVALEPSGAP 225
>gnl|CDD|130799 TIGR01738, bioH, pimelyl-[acyl-carrier protein] methyl ester
esterase. This CoA-binding enzyme is required for the
production of pimeloyl-coenzyme A, the substrate of the
BioF protein early in the biosynthesis of biotin. Its
exact function is unknown, but is proposed in ref 2.
This enzyme belongs to the alpha/beta hydrolase fold
family (Pfam model pfam00561). Members of this family
are restricted to the Proteobacteria [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 245
Score = 27.9 bits (62), Expect = 7.2
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 157 AAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQG-ALASSAPMFQTNDLAPCDI 208
AA P P I G S GG++A + +P V+ +S+P F + P I
Sbjct: 60 AAQAPDPAIWLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGI 112
>gnl|CDD|137836 PRK10349, PRK10349, carboxylesterase BioH; Provisional.
Length = 256
Score = 27.7 bits (61), Expect = 8.7
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 161 PHPVIAFGGSYGGMLAFWLRLKYPHIVQGALA-SSAPMFQTNDLAP 205
P I G S GG++A + L +P VQ + +S+P F D P
Sbjct: 73 PDKAIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWP 118
>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional.
Length = 1296
Score = 28.1 bits (63), Expect = 9.0
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 9/56 (16%)
Query: 122 LSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPH-PVIAFGGSYGGMLA 176
+ SPR G + A +L + + + L +PH P G S GG LA
Sbjct: 1100 IQSPRPDGPMQTATSLDEVCE-----AHLATLL---EQQPHGPYHLLGYSLGGTLA 1147
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.422
Gapped
Lambda K H
0.267 0.0694 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,548,381
Number of extensions: 1681473
Number of successful extensions: 1567
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1562
Number of HSP's successfully gapped: 40
Length of query: 337
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 240
Effective length of database: 6,635,264
Effective search space: 1592463360
Effective search space used: 1592463360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.6 bits)