RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1220
(337 letters)
>3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP,
serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo
sapiens}
Length = 446
Score = 235 bits (600), Expect = 2e-74
Identities = 125/317 (39%), Positives = 169/317 (53%), Gaps = 21/317 (6%)
Query: 33 YETKFFDAKLDHFTYVSNQTFPLKYLINDEFWDEDGGAPVFFYCGNEDAIETFAENLGFL 92
Y +F K+DHF + + +TF +YL+ D++W ++GG + FY GNE I F N GF+
Sbjct: 3 YSVLYFQQKVDHFGFNTVKTFNQRYLVADKYWKKNGG-SILFYTGNEGDIIWFCNNTGFM 61
Query: 93 WESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASR 152
W+ A+ A +V EHRYYG SLPFG S R +LT Q LADF ++I+ L+
Sbjct: 62 WDVAEELKAMLVFAEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLKRTIP 121
Query: 153 LRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTNDLAPCDIYYKE 212
PVIA GGSYGGMLA W R+KYPH+V GALA+SAP++Q DL PC ++ K
Sbjct: 122 GAENQ-----PVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFEDLVPCGVFMKI 176
Query: 213 VTKIYRDVSPKCEENIRNSWTFINTELQTDSGRVEFSREWNLCSSLKTQVDVAIFKRYLS 272
VT +R P C E+I SW IN T SG + +LCS L +Q D+ K ++S
Sbjct: 177 VTTDFRKSGPHCSESIHRSWDAINRLSNTGSGLQWLTGALHLCSPLTSQ-DIQHLKDWIS 235
Query: 273 DMYTTMAMTNYPYPSNFLTPLPGNPVKVD--------------VAIFKRYLSDMYTTMAM 318
+ + +AM +YPY SNFL PLP P+KV + + L+ Y
Sbjct: 236 ETWVNLAMVDYPYASNFLQPLPAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYYNYSGQ 295
Query: 319 TNYPYPSNFLTPLPGNP 335
S T G
Sbjct: 296 VKCLNISETATSSLGTL 312
>3jyh_A Dipeptidyl-peptidase 2; structural genomics, structural genomics
consortium, SGC, aminopeptidase, cleavage on PAIR of
basic residues; HET: NAG BMA; 2.19A {Homo sapiens} PDB:
3n0t_A*
Length = 469
Score = 220 bits (561), Expect = 2e-68
Identities = 109/299 (36%), Positives = 160/299 (53%), Gaps = 12/299 (4%)
Query: 27 STDAYTYETKFFDAKLDHFTY--VSNQTFPLKYLINDEFWDEDGGAPVFFYCGNEDAIET 84
+ D ++ +FF +LDHF + N+TFP ++L++D FW G P+FFY GNE +
Sbjct: 2 AMDDPGFQERFFQQRLDHFNFERFGNKTFPQRFLVSDRFWV-RGEGPIFFYTGNEGDVWA 60
Query: 85 FAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVI 144
FA N F+ E A A +V EHRYYG SLPFG +S LTV Q LADF +++
Sbjct: 61 FANNSAFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHT-ELLTVEQALADFAELL 119
Query: 145 QSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTNDLA 204
++L + P IAFGGSYGGML+ +LR+KYPH+V GALA+SAP+ L
Sbjct: 120 RALRRDLGA------QDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVAGLG 173
Query: 205 PCDIYYKEVTKIYRDVSPKCEENIRNSWTFINTELQTDSGRVEFSREWNLCSSLKTQVDV 264
+ ++++VT + SPKC + +R ++ +L E+ C L + D+
Sbjct: 174 DSNQFFRDVTADFEGQSPKCTQGVREAFR-QIKDLFLQGAYDTVRWEFGTCQPLSDEKDL 232
Query: 265 AIFKRYLSDMYTTMAMTNYPYPSNFLTPLPGNPVKVDVAIFKRYLSDMYTTMAMTNYPY 323
+ + +T +AM +YPYP++FL PLP NPVKV + T +
Sbjct: 233 TQLFMFARNAFTVLAMMDYPYPTDFLGPLPANPVKVGCDRLLSE-AQRITGLRALAGLV 290
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 6e-07
Identities = 62/383 (16%), Positives = 105/383 (27%), Gaps = 135/383 (35%)
Query: 19 VVLSSFILSTDAYTYE--TK--FFDAKLDHFTYVSNQTFPLKYLINDEFWDEDGGAPVFF 74
V +F+ + D + K ++DH + L FW
Sbjct: 24 VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL----FW--------TL 71
Query: 75 YCGNEDAIETFAE-----NLGFLWESAKRFSARVVLVEHRY-------YGSSLPFGPKSL 122
E+ ++ F E N FL K + ++ Y Y + F ++
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 123 SSPRLSGYLTVAQTLADFVDVIQSLEDASRLRI----GA-----------AFKPHPVIAF 167
RL YL + Q L L A + I G+ ++K + F
Sbjct: 132 --SRLQPYLKLRQAL-------LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 168 GGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTNDLAPCDIYYKEVTKIYRDVSPKCEEN 227
FWL LK + + L M Q + + P
Sbjct: 183 K-------IFWLNLKNCNSPETVLE----MLQK---------------LLYQIDPNWTSR 216
Query: 228 IRNSWTFINTELQTDSGRVEFSRE----------------WNL---------CSSLKTQV 262
+S N +L+ S + E R N C L T
Sbjct: 217 SDHS---SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 263 DVAIFKRYLSDMYTTMAMTNYPYPSNFLTP-----------------LP-----GNPVKV 300
+ + T +++ ++ LTP LP NP +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMT---LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR- 329
Query: 301 DVAIFKRYLSDMYTTMAMTNYPY 323
++I + D T N+ +
Sbjct: 330 -LSIIAESIRDGLAT--WDNWKH 349
Score = 40.2 bits (93), Expect = 0.001
Identities = 50/271 (18%), Positives = 80/271 (29%), Gaps = 63/271 (23%)
Query: 16 LAGVVLSSFILSTDAYTYETKFFDAKLDHFTYVSNQTFPLKYLINDEFWDEDGGAPVFFY 75
+ + + + D + + KL S L L E+ +F
Sbjct: 332 IIAESIRDGLATWDNWKHVNC---DKLTTIIESS-----LNVLEPAEY------RKMFDR 377
Query: 76 CG--NEDA-IETFAENLGFLWESAKRFSARVVLVE-HRYYGSSLPFGPKSLSSPRLSGYL 131
A I T L +W + VV+ + H+Y S + PK + S YL
Sbjct: 378 LSVFPPSAHIPT--ILLSLIWFDVIKSDVMVVVNKLHKY--SLVEKQPKESTISIPSIYL 433
Query: 132 TVAQTLADFVDVIQSLEDASRLRIGAAFKPH---PVIAFGGSY-------------GGML 175
+ L + + +S+ D I F P Y M
Sbjct: 434 ELKVKLENEYALHRSIVD--HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 176 AF--------WLRLKYPHIVQGALASSAPMFQTNDLAPCDIY----------YKEVTKIY 217
F +L K I + A +A N L Y Y+ +
Sbjct: 492 LFRMVFLDFRFLEQK---IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548
Query: 218 RDVSPKCEEN-IRNSWT-FINTELQTDSGRV 246
D PK EEN I + +T + L + +
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
Score = 39.1 bits (90), Expect = 0.002
Identities = 45/302 (14%), Positives = 89/302 (29%), Gaps = 74/302 (24%)
Query: 21 LSSFILSTDAYTYETKFFDAKLDHFTYVSNQTFPLKYLINDEFWDEDGGAPVFFYCGNED 80
+S + A+L + ++ + L+ +
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRL--LKSKPYENCLLVLLNVQN-------------AK 257
Query: 81 AIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRL---SGYLTVAQTL 137
A F S + +L+ R+ + + + L S LT +
Sbjct: 258 AWNAFN------------LSCK-ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 138 ADFVDVI-QSLEDASRLRIGAAFKPHP-VIA-FGGSYGGMLAFWLRLKYP------HIVQ 188
+ + + +D R +P ++ S LA W K+ I++
Sbjct: 305 SLLLKYLDCRPQDLPR----EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 189 GALASSAP-----MFQTNDLA--PCD--IYYKEVTKIYRDVSPKCEENIRNSWTFINTEL 239
+L P MF L+ P I ++ I+ DV + N L
Sbjct: 361 SSLNVLEPAEYRKMFD--RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK--LHKYSL 416
Query: 240 ---QTDSGRVEFSREWNLCSSLKTQVD--VAIFKRYLSDMYTTMAMTNYP--YPSNFLTP 292
Q + ++ LK +++ A+ + + D Y N P + S+ L P
Sbjct: 417 VEKQPKESTISI---PSIYLELKVKLENEYALHRSIV-DHY------NIPKTFDSDDLIP 466
Query: 293 LP 294
Sbjct: 467 PY 468
Score = 29.8 bits (66), Expect = 1.6
Identities = 21/151 (13%), Positives = 39/151 (25%), Gaps = 46/151 (30%)
Query: 107 EHRY-YGSSLP-FGP---KSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKP 161
EH+Y Y L F + + + + +I S + S
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL------- 65
Query: 162 HPVIAFGGSYGGMLAFW-LRLKYPHIVQGALASS--------APMFQTNDLAPC---DIY 209
FW L K +VQ + +T P +Y
Sbjct: 66 -------------RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 210 YKEVTKIYRDVS---------PKCEENIRNS 231
++ ++Y D + +R +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 3e-06
Identities = 53/303 (17%), Positives = 92/303 (30%), Gaps = 120/303 (39%)
Query: 7 NFTGLFGVLLAGVVLSSFILSTDAYTYETKFFDAKLDHFTYV------SNQTFPLKYL-- 58
G G G+V + I TD ++E+ FF + T + + +P L
Sbjct: 266 YLKGATGHS-QGLVTAVAIAETD--SWES-FFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 59 -INDEFWDEDGGAP-----VFFYCGN-----EDAIETFAENL------------------ 89
I ++ + + G P + +D + +L
Sbjct: 322 SILEDSLENNEGVPSPMLSI---SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378
Query: 90 --GF---LW----------------ESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLS 128
G L+ +S FS R + +R+ LP ++SP S
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF----LP-----VASPFHS 429
Query: 129 GYLTVAQTLADFVDVIQSLE-DASRLRIGAAFKPHPVIA-FGGS----YGGMLA------ 176
L A L + V ++ +A ++I PV F GS G ++
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQI-------PVYDTFDGSDLRVLSGSISERIVDC 482
Query: 177 ------FW---LRLKYPHIV---QGALASSAPMFQTN--------------DLAPCDIY- 209
W + K HI+ G + + N D+ P D Y
Sbjct: 483 IIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYG 542
Query: 210 YKE 212
+K+
Sbjct: 543 FKQ 545
Score = 43.1 bits (101), Expect = 1e-04
Identities = 50/310 (16%), Positives = 93/310 (30%), Gaps = 103/310 (33%)
Query: 14 VLLAGVVLSSFILSTDAYTYETKFFDAKL-DHFTYVSNQTFPLKYLINDEFWDEDGGAPV 72
L G + ++ T ++ F ++L + F + P + F +D P
Sbjct: 10 TLSHGSLEHVLLVPTASF-----FIASQLQEQFN----KILPEPT---EGFAADD--EP- 54
Query: 73 FFYCGNEDAIETFAENLGFL-----WESAKRFSA--RVVLVE-----------HRYYGSS 114
E + LG++ +F + L E H
Sbjct: 55 ------TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL 108
Query: 115 LPFGPKSLSSPR--LSGYLTVAQTLAD--FVDVIQS--LEDASRLRIGAAFKPHPVIA-F 167
L +L + + Y+T A+ +A F S G A ++A F
Sbjct: 109 LQENDTTLVKTKELIKNYIT-ARIMAKRPFDKKSNSALFRAVGE---GNA----QLVAIF 160
Query: 168 GGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTNDLAPCDIYYKEVTKIYRDVSPKCEEN 227
GG QG T+D Y++E+ +Y+ +
Sbjct: 161 GG------------------QGN---------TDD------YFEELRDLYQTYHVLVGDL 187
Query: 228 IRNSWTFINTELQTDSGRVE--FSREWNLCSSLKTQVDVAIFKRYLSDMYTTMAMTNYPY 285
I+ S ++ EL + E F++ N+ L+ + Y + + P
Sbjct: 188 IKFSAETLS-ELIRTTLDAEKVFTQGLNILEWLENPSNTP------DKDY----LLSIPI 236
Query: 286 --PSNFLTPL 293
P + L
Sbjct: 237 SCPLIGVIQL 246
Score = 37.0 bits (85), Expect = 0.010
Identities = 37/181 (20%), Positives = 54/181 (29%), Gaps = 52/181 (28%)
Query: 29 DAYTYETKFFD----------AKLDHFTYVSNQTFPLKY--LINDEFWDEDGGAPVFFYC 76
D + +T F HF + Y +I + D F
Sbjct: 1650 DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKE 1709
Query: 77 GNEDAIE-TF---AENLG---------FLWESA--KRFSARVVLVEHRYY-GSSLPFGPK 120
NE + TF L L E A + ++ ++ + G SL
Sbjct: 1710 INEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSL----- 1764
Query: 121 SLSSPRLSG-YLTVAQTLADFVDVIQSLEDASRL---RIGAAFKPH-PVIAFGGSYGGML 175
G Y A LA DV+ S+E + R G + P G S GM+
Sbjct: 1765 --------GEY--AA--LASLADVM-SIESLVEVVFYR-GMTMQVAVPRDELGRSNYGMI 1810
Query: 176 A 176
A
Sbjct: 1811 A 1811
>2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase,
putative lipase; HET: CME CSO; 1.90A {Saccharomyces
cerevisiae} PDB: 2y6v_A*
Length = 398
Score = 46.7 bits (110), Expect = 6e-06
Identities = 32/272 (11%), Positives = 72/272 (26%), Gaps = 34/272 (12%)
Query: 26 LSTDAYTYETKFFDA---KLDHFTYVSNQTFPLKY-----LINDEFWDEDGGAPVFF--- 74
+ + + ETK A + T + L Y + F
Sbjct: 1 MEQNRFKKETKTCSASWPRAPQSTLCATDRLELTYDVYTSAERQRRSRTATRLNLVFLHG 60
Query: 75 YCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVA 134
++ E + L +V+L++ +G S L + ++ A
Sbjct: 61 SGMSKVVWEYYLPRLVAADAEGNYAIDKVLLIDQVNHGDSAVRNRGRLGTNF--NWIDGA 118
Query: 135 QTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGA-LAS 193
+ + D+ P + G S GG A + P++ L
Sbjct: 119 RDVLKIATCELGSIDSH---------PALNVVIGHSMGGFQALACDVLQPNLFHLLILIE 169
Query: 194 SAPMFQTNDLAPCDIYYKEVTKIYRDVSPKCEENIRNSWTFINTELQTDSGRVEFSREWN 253
+ + A + +I ++ + + + E+ ++
Sbjct: 170 PVVITRKAIGAGRPGLPPDSPQIPENLYNSLRLKTCDHF----------ANESEY-VKYM 218
Query: 254 LCSSLKTQVDVAIFKRYLSDMYTTMAMTNYPY 285
S T I + + T + +
Sbjct: 219 RNGSFFTNAHSQILQNIIDFERTKASGDDEDG 250
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad,
rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A
3dyi_A 3dyv_A 3e1g_A
Length = 251
Score = 43.7 bits (103), Expect = 3e-05
Identities = 31/145 (21%), Positives = 45/145 (31%), Gaps = 16/145 (11%)
Query: 102 RVVLVEHRYYGSSLPFGP--KSLSS-------PRLSGYLTV----AQTLADFVDVIQSLE 148
V++ H Y GS ++L P SG+ TV T +
Sbjct: 23 TGVVLLHAYTGSPNDMNFMARALQRSGYGVYVPLFSGHGTVEPLDILTKGNPDIWWAESS 82
Query: 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTNDLAPCDI 208
A K V FG S GG+ A P I G + SS + + L P +
Sbjct: 83 AAVAH---MTAKYAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGFL 139
Query: 209 YYKEVTKIYRDVSPKCEENIRNSWT 233
Y E S + + +
Sbjct: 140 KYAEYMNRLAGKSDESTQILAYLPG 164
>1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI,
protei structure initiative; HET: MSE 3OH; 1.70A
{Escherichia coli} SCOP: c.69.1.26
Length = 258
Score = 43.0 bits (102), Expect = 5e-05
Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 30/111 (27%)
Query: 96 AKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRI 155
+ F + LV+ +G S FG +LAD + +
Sbjct: 37 SSHF--TLHLVDLPGFGRSRGFGAL---------------SLADMAEAV----------- 68
Query: 156 GAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQG-ALASSAPMFQTNDLAP 205
P I G S GG++A + L +P V+ +S+P F D P
Sbjct: 69 -LQQAPDKAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWP 118
>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE PGE; 1.96A {Bacillus subtilis}
Length = 306
Score = 42.3 bits (100), Expect = 1e-04
Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 31/119 (26%)
Query: 83 ETFAENLGFLWESAKRFSARVVLVEHRYYG-SSLPFGPKSLSSPRLSGYLTVAQTLADFV 141
+ N+ + ++ R V+ S+P + T D+
Sbjct: 81 TMWYPNIADW---SSKY--RTYAVDIIGDKNKSIPENV--------------SGTRTDYA 121
Query: 142 DVIQSLEDASRLRIGAAFKPHPVIAFGG-SYGGMLAFWLRLKYPHIVQG-ALASSAPMF 198
+ + + D L I + G S GG+ L+ P V+ A+ S A F
Sbjct: 122 NWLLDVFDN--LGIEKS-------HMIGLSLGGLHTMNFLLRMPERVKSAAILSPAETF 171
>3r0v_A Alpha/beta hydrolase fold protein; structural genomics,
PSI-biology, protein structure initiati alpha/beta
hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus}
Length = 262
Score = 42.3 bits (100), Expect = 1e-04
Identities = 24/143 (16%), Positives = 36/143 (25%), Gaps = 30/143 (20%)
Query: 63 FWDEDG-GAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKS 121
++ G G PV G A L A F V+ + R G S
Sbjct: 16 AFERSGSGPPVVLVGGALSTRAGGAPLAERL---APHF--TVICYDRRGRGDS------- 63
Query: 122 LSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRL 181
Y V + + D +I + FG S G L+
Sbjct: 64 ---GDTPPY-AVEREIEDLAAIIDAAGG-------------AAFVFGMSSGAGLSLLAAA 106
Query: 182 KYPHIVQGALASSAPMFQTNDLA 204
I + A+ +
Sbjct: 107 SGLPITRLAVFEPPYAVDDSRPP 129
>2yys_A Proline iminopeptidase-related protein; TTHA1809, structural
genomics, unknown function; 2.20A {Thermus thermophilus}
Length = 286
Score = 42.4 bits (100), Expect = 1e-04
Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 21/103 (20%)
Query: 96 AKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRI 155
+ F RVV + R G SL + T+ V+ L +A L +
Sbjct: 50 LEGF--RVVYFDQRGSGRSLELPQ------DPRLF-----TVDALVEDTLLLAEA--LGV 94
Query: 156 GAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMF 198
+G ++A + ++P L + F
Sbjct: 95 ERF------GLLAHGFGAVVALEVLRRFPQAEGAILLAPWVNF 131
>4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 1.50A {Pseudomonas aeruginosa}
Length = 315
Score = 41.3 bits (97), Expect = 3e-04
Identities = 31/172 (18%), Positives = 52/172 (30%), Gaps = 34/172 (19%)
Query: 34 ETKFFDAKLDHFTY--------VSNQTFPLKYLINDEFWDEDGGAPVFFYCGNEDAIETF 85
+ + +L+ F Y ++Q PL D + G + G T+
Sbjct: 3 QAPVYGERLEGFDYAYPVHYLDFTSQGQPLSMAYLDVAPKKANGRTILLMHGKNFCAGTW 62
Query: 86 AENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQ 145
+ L + + RV+ V+ + S S P Y +
Sbjct: 63 ERTIDVL--ADAGY--RVIAVDQVGFCKS--------SKPAHYQY-----SFQQLAANTH 105
Query: 146 SLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQG-ALASSAP 196
+L + + G S GGMLA L YP V+ L +
Sbjct: 106 ALLERLGVA--------RASVIGHSMGGMLATRYALLYPRQVERLVLVNPIG 149
>3nwo_A PIP, proline iminopeptidase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, mycobac smegmatis; 1.90A {Mycobacterium
smegmatis}
Length = 330
Score = 40.8 bits (96), Expect = 3e-04
Identities = 24/149 (16%), Positives = 41/149 (27%), Gaps = 39/149 (26%)
Query: 63 FWDEDG---GAPVFF-------YCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYG 112
E+ P+ I A+ G V+ + G
Sbjct: 45 TTPENAQPHALPLIVLHGGPGMAHNYVANIAALADETGR----------TVIHYDQVGCG 94
Query: 113 SSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYG 172
+S + T FVD ++ A L I G S+G
Sbjct: 95 NSTHLPDAPAD-----FW-----TPQLFVDEFHAVCTA--LGIE------RYHVLGQSWG 136
Query: 173 GMLAFWLRLKYPHIVQG-ALASSAPMFQT 200
GML + ++ P + A+ +S +
Sbjct: 137 GMLGAEIAVRQPSGLVSLAICNSPASMRL 165
>3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase
fold, hydrolase; 1.20A {Bacillus SP}
Length = 270
Score = 40.6 bits (95), Expect = 3e-04
Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 17/150 (11%)
Query: 103 VVLVEHRYYGSSLPFGP--KSLSS-------PRLSGYLTVAQTLA--DFVDVIQSLEDAS 151
V+LV H + G+ P ++ + PRL G+ T + + F D + S+E+
Sbjct: 43 VLLV-HGFTGTPHSMRPLAEAYAKAGYTVCLPRLKGHGTHYEDMERTTFHDWVASVEEG- 100
Query: 152 RLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTNDLAPCDIYYK 211
+ + G S GG L +L +P I + +A
Sbjct: 101 -YGWLKQ-RCQTIFVTGLSMGGTLTLYLAEHHPDICGIVPIN--AAVDIPAIAAGMTGGG 156
Query: 212 EVTKIYRDVSPKCEENIRNSWTFINTELQT 241
E+ + + + + T +
Sbjct: 157 ELPRYLDSIGSDLKNPDVKELAYEKTPTAS 186
>2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo
sapiens} PDB: 2oci_A* 2ock_A 2ocl_A
Length = 254
Score = 40.0 bits (94), Expect = 5e-04
Identities = 29/143 (20%), Positives = 42/143 (29%), Gaps = 29/143 (20%)
Query: 67 DGGAPVFFYCGNEDAIET-FAENLGFLWESAKRFSARVVLVEHRYYG-SSLPFGPKSLSS 124
+G V G + ET F L L + K F VV + R YG S P
Sbjct: 21 EGDHAVLLLPGMLGSGETDFGPQLKNL--NKKLF--TVVAWDPRGYGHSRPPDRDFPADF 76
Query: 125 PRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGG-SYGGMLAFWLRLKY 183
+ A+ D + L+ + G S GG+ A KY
Sbjct: 77 -----FERDAKDAVDLMK---------ALKFKKV-------SLLGWSDGGITALIAAAKY 115
Query: 184 PHIVQG-ALASSAPMFQTNDLAP 205
P + + + D
Sbjct: 116 PSYIHKMVIWGANAYVTDEDSMI 138
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG;
HET: MES; 2.25A {Pseudomonas aeruginosa}
Length = 266
Score = 39.9 bits (94), Expect = 6e-04
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 29/104 (27%)
Query: 96 AKRFSARVVLVEHRYYG-SSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLR 154
+ F RV+ + R +G SS+P GP Y TLA + + L DA L
Sbjct: 51 TRHF--RVLRYDARGHGASSVPPGP----------Y-----TLARLGEDVLELLDA--LE 91
Query: 155 IGAAFKPHPVIAFGG-SYGGMLAFWLRLKYPHIVQG-ALASSAP 196
+ A F G S GG++ WL L P ++ LA+++
Sbjct: 92 VRRA-------HFLGLSLGGIVGQWLALHAPQRIERLVLANTSA 128
>3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure
initiative, PSI-2, structural midwest center for
structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus
anthracis}
Length = 278
Score = 39.6 bits (93), Expect = 7e-04
Identities = 31/189 (16%), Positives = 55/189 (29%), Gaps = 34/189 (17%)
Query: 96 AKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRI 155
+ V LV + G+S S Y ++ + + ++++ +A L I
Sbjct: 47 TDHY--SVYLVNLKGCGNSDSAKN-------DSEY-----SMTETIKDLEAIREA--LYI 90
Query: 156 GAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQG-ALASSAPMFQTNDLAPCDIYYKEVT 214
G S GGMLA + + + +A Y
Sbjct: 91 N------KWGFAGHSAGGMLALVYATEAQESLTKIIVGGAAASK----------EYASHK 134
Query: 215 KIYRDVSPKCEENIRNSWTFINTELQTDSGRVEFSREWNLCSSLKTQVDVAIFKRYLSDM 274
I + +N + R SREW L S ++ + + +
Sbjct: 135 DSIYCSKNVKFNRIVSIMNALNDDSTVQEERKALSREWAL-MSFYSEEKLEEALKLPNSG 193
Query: 275 YTTMAMTNY 283
T NY
Sbjct: 194 KTVGNRLNY 202
>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 1.60A {Thermus thermophilus} SCOP:
c.69.1.27
Length = 238
Score = 39.3 bits (91), Expect = 9e-04
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 8/89 (8%)
Query: 102 RVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKP 161
++ + +G P S SPR + + F + + + + + R G
Sbjct: 53 LLLAFDAPRHGER-EGPPPSSKSPRYVEEV--YRVALGFKEEARRVAEEAERRFGL---- 105
Query: 162 HPVIAFGGSYGGMLAFWLRLKYPHIVQGA 190
P+ GGS G +A L +
Sbjct: 106 -PLFLAGGSLGAFVAHLLLAEGFRPRGVL 133
>2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism;
1.90A {Burkholderia xenovorans}
Length = 266
Score = 39.5 bits (93), Expect = 0.001
Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 29/110 (26%)
Query: 96 AKRFSARVVLVEHRYYG-SSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLR 154
+K F RV+ + R +G S P GP Y T+ + L D L+
Sbjct: 50 SKHF--RVLRYDTRGHGHSEAPKGP----------Y-----TIEQLTGDVLGLMDT--LK 90
Query: 155 IGAAFKPHPVIAFGG-SYGGMLAFWLRLKYPHIVQG-ALASSAPMFQTND 202
I A F G S GG+ L ++ ++ AL ++A + +
Sbjct: 91 IARA-------NFCGLSMGGLTGVALAARHADRIERVALCNTAARIGSPE 133
>2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR
family, developmental protei differentiation,
neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus
musculus} PDB: 2xmq_A 2xmr_A 2xms_A
Length = 286
Score = 39.4 bits (91), Expect = 0.001
Identities = 20/139 (14%), Positives = 37/139 (26%), Gaps = 17/139 (12%)
Query: 65 DEDGGAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSS 124
P F N ++ RF ++++ G + +
Sbjct: 30 TPKPKRPAIFT------YHDVGLNYKSCFQPLFRFGDMQEIIQNFVRVHVDAPGMEEGAP 83
Query: 125 PRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYP 184
GY +L D+I + +I G G + L +P
Sbjct: 84 VFPLGY--QYPSLDQLADMIPCILQY--------LNFSTIIGVGVGAGAYILSRYALNHP 133
Query: 185 HIVQG-ALASSAPMFQTND 202
V+G L + P +
Sbjct: 134 DTVEGLVLINIDPNAKGWM 152
>1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase,
polyketide, tailoring enzyme, structural proteomics in
europe, spine; HET: AKT 1PE; 1.45A {Streptomyces
purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A*
Length = 298
Score = 39.4 bits (92), Expect = 0.001
Identities = 24/176 (13%), Positives = 50/176 (28%), Gaps = 24/176 (13%)
Query: 102 RVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKP 161
V+ +HR G S + Y + ++ D + A
Sbjct: 53 HVIRYDHRDTGRS------TTRDFAAHPY-----GFGELAADAVAVLDG--WGVDRA--- 96
Query: 162 HPVIAFGGSYGGMLAFWLRLKYPHIVQGA-LASSAPMFQTNDLAPCDIYYKEVTKIYRDV 220
H V G S G + + L + + + + +I + D
Sbjct: 97 HVV---GLSMGATITQVIALDHHDRLSSLTMLLGGG---LDIDFDANIERVMRGEPTLDG 150
Query: 221 SPKCEENIRNSWTFINTELQTDSGRVEFS-REWNLCSSLKTQVDVAIFKRYLSDMY 275
P ++ ++ +N + + V +W + S D A + R+
Sbjct: 151 LPGPQQPFLDALALMNQPAEGRAAEVAKRVSKWRILSGTGVPFDDAEYARWEERAI 206
>1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase);
PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10
Length = 285
Score = 39.2 bits (92), Expect = 0.001
Identities = 21/118 (17%), Positives = 35/118 (29%), Gaps = 25/118 (21%)
Query: 81 AIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADF 140
A + + L A+ F VV + +G S + + +
Sbjct: 44 AASNWRPIIPDL---AENF--FVVAPDLIGFG---------QSEYPETYPGHIMSWVGMR 89
Query: 141 VDVIQSLEDASRLRIGAAFKPHPVIAFGG-SYGGMLAFWLRLKYPHIVQG-ALASSAP 196
V+ I L + I + G S GG + L ++ P AL S
Sbjct: 90 VEQILGLMNH--FGIEKS-------HIVGNSMGGAVTLQLVVEAPERFDKVALMGSVG 138
>3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like
hydrolase, structural genomi center for structural
genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm
1728}
Length = 207
Score = 38.7 bits (90), Expect = 0.001
Identities = 25/176 (14%), Positives = 48/176 (27%), Gaps = 28/176 (15%)
Query: 64 WDEDGGAPVFFYC-GNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSL 122
D G + + F S + V ++ +G S
Sbjct: 21 MVTDSNRRSIALFHGYSFTSMDWDKADLFNNYSKIGY--NVYAPDYPGFGRS-------- 70
Query: 123 SSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLK 182
Y L + I+ A+ + + G S GG + L+
Sbjct: 71 --ASSEKYGIDRGDLKHAAEFIRDYLKANGVA--------RSVIMGASMGGGMVIMTTLQ 120
Query: 183 YPHIVQGALASSAPMFQTNDLAPC-------DIYYKEVTKIYRDVSPKCEENIRNS 231
YP IV G +A + ++ ++ + + +S + I S
Sbjct: 121 YPDIVDGIIAVAPAWVESLKGDMKKIRQKTLLVWGSKDHVVPIALSKEYASIISGS 176
>1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta
hydrolase, signaling protein; 2.50A {Bacillus subtilis}
PDB: 1wpr_A*
Length = 271
Score = 38.4 bits (90), Expect = 0.002
Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 25/106 (23%)
Query: 96 AKRFSARVVLVEHRYYG-SSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLR 154
+ RV+L ++ G S L + TL + + + +A L
Sbjct: 44 EEDH--RVILFDYVGSGHSDLRAYDLNRYQ-----------TLDGYAQDVLDVCEA--LD 88
Query: 155 IGAAFKPHPVIAFGG-SYGGMLAFWLRLKYPHIVQG-ALASSAPMF 198
+ F G S G ++ ++ P + + +P +
Sbjct: 89 LKET-------VFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCY 127
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2,
structural genomics, protein structure initiative,
midwest for structural genomics; 2.00A {Oenococcus oeni}
Length = 272
Score = 37.8 bits (88), Expect = 0.003
Identities = 21/139 (15%), Positives = 40/139 (28%), Gaps = 33/139 (23%)
Query: 63 FWDEDG-GAPVFF---YCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFG 118
+ G G P+ F ++ + F E L + + + ++ G
Sbjct: 14 SYFSIGSGTPIIFLHGLSLDKQSTCLFFEPL------SNVGQYQRIYLDLPGMG------ 61
Query: 119 PKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFW 178
S P + +I+++E+ + + G SYGG LA
Sbjct: 62 ---NSDPISPST-----SDNVLETLIEAIEEI--IGAR---RFILY---GHSYGGYLAQA 105
Query: 179 LRLKYPHIVQG-ALASSAP 196
+ G L
Sbjct: 106 IAFHLKDQTLGVFLTCPVI 124
>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone
biosynthesis, lyase; 1.94A {Staphylococcus aureus}
Length = 269
Score = 37.3 bits (87), Expect = 0.004
Identities = 14/142 (9%), Positives = 40/142 (28%), Gaps = 35/142 (24%)
Query: 64 WDEDGGAPVFF---YCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPK 120
+ + + F + + T+ ++ + V+ ++ +G
Sbjct: 11 ANVETNQVLVFLHGFLSD---SRTYHNHIEKF---TDNY--HVITIDLPGHGED------ 56
Query: 121 SLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGG-SYGGMLAFWL 179
S + ++ + D + + G S GG +A +
Sbjct: 57 --QSSMDETW-----NFDYITTLLDRILDK--YKDKSIT-------LFGYSMGGRVALYY 100
Query: 180 RLKYPHIVQGA-LASSAPMFQT 200
+ + L S++P +
Sbjct: 101 AINGHIPISNLILESTSPGIKE 122
>3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase,
hydrolase; 1.90A {Mycobacterium tuberculosis} PDB:
3e3a_A 3hys_A 3hzo_A
Length = 293
Score = 37.3 bits (87), Expect = 0.004
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 26/102 (25%)
Query: 96 AKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRI 155
A + R + ++R G++ G+ T V +L + L I
Sbjct: 69 AAGY--RCITFDNRGIGAT----------ENAEGF-----TTQTMVADTAALIET--LDI 109
Query: 156 GAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGA-LASSAP 196
P G S G +A L + P +V A L ++
Sbjct: 110 A------PARVVGVSMGAFIAQELMVVAPELVSSAVLMATRG 145
>1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta
hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP:
c.69.1.29 PDB: 1r1d_A* 4diu_A
Length = 247
Score = 37.0 bits (86), Expect = 0.004
Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 19/126 (15%)
Query: 91 FLWESAKRFSARVVLVEHRYYGSSLPFGP--KSLSS-------PRLSGYLTVAQTLA--D 139
F +E+ +R VL+ H + G+S + L S P G+ + L
Sbjct: 10 FFFEAGER----AVLLLHGFTGNSADVRMLGRFLESKGYTCHAPIYKGHGVPPEELVHTG 65
Query: 140 FVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQ 199
D Q + + + G S GG+ + L P ++G + APM+
Sbjct: 66 PDDWWQDVMNG--YEFLKNKGYEKIAVAGLSLGGVFSLKLGYTVP--IEGIVTMCAPMYI 121
Query: 200 TNDLAP 205
++
Sbjct: 122 KSEETM 127
>3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine
esterase; 2.20A {Homo sapiens}
Length = 342
Score = 37.4 bits (87), Expect = 0.005
Identities = 23/126 (18%), Positives = 38/126 (30%), Gaps = 25/126 (19%)
Query: 85 FAENLGFLWESAKRFSAR---VVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFV 141
E+ G E A+ V +H +G S ++ DF
Sbjct: 69 AGEHSGRYEELARMLMGLDLLVFAHDHVGHGQS----------EGERMVVS------DFH 112
Query: 142 DVIQSLEDASRLR--IGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQ 199
+ D + + + PV G S GG +A + P G + S P+
Sbjct: 113 VFV---RDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLIS-PLVL 168
Query: 200 TNDLAP 205
N +
Sbjct: 169 ANPESA 174
>3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.10A {Escherichia coli SE11}
Length = 268
Score = 37.2 bits (87), Expect = 0.005
Identities = 16/103 (15%), Positives = 29/103 (28%), Gaps = 26/103 (25%)
Query: 96 AKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRI 155
+ + +VV + R G++ Y ++A + A I
Sbjct: 39 EQEY--QVVCYDQRGTGNN--------PDTLAEDY-----SIAQMAAELHQALVA--AGI 81
Query: 156 GAAFKPHPVIAFGG-SYGGMLAFWLRLKYPHIVQG-ALASSAP 196
A G + G ++ L L YP V +
Sbjct: 82 EHY-------AVVGHALGALVGMQLALDYPASVTVLISVNGWL 117
>4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A
4ao8_A
Length = 259
Score = 36.8 bits (84), Expect = 0.005
Identities = 17/117 (14%), Positives = 30/117 (25%), Gaps = 6/117 (5%)
Query: 96 AKRFSAR---VVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLED--A 150
AK R + ++ +G + G + + + D A
Sbjct: 78 AKLLVGRGISAMAIDGPGHGER-ASVQAGREPTDVVGLDAFPRMWHEGGGTAAVIADWAA 136
Query: 151 SRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTNDLAPCD 207
+ I A P P +G S G M+ + I L +
Sbjct: 137 ALDFIEAEEGPRPTGWWGLSMGTMMGLPVTASDKRIKVALLGLMGVEGVNGEDLVRL 193
>1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta
hydrolase fold; 2.10A {Escherichia coli}
Length = 289
Score = 36.9 bits (86), Expect = 0.005
Identities = 34/183 (18%), Positives = 55/183 (30%), Gaps = 36/183 (19%)
Query: 67 DGGAPVFF---YCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLS 123
G V F+ N+ L + RV+L++ +G S
Sbjct: 34 QGDETVVLLHGSGPGATGWANFSRNIDPL--VEAGY--RVILLDCPGWGKS--------D 81
Query: 124 SPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGG-SYGGMLAFWLRLK 182
S SG +++S+ D L I G S GG + LK
Sbjct: 82 SVVNSGS-----RSDLNARILKSVVDQ--LDIAKI-------HLLGNSMGGHSSVAFTLK 127
Query: 183 YPHIVQGA-LASSAPMFQTNDLAPCDIYYKEVTKIYRDVSPKCEENIRN--SWTFINTEL 239
+P V L + K + ++YR + EN++ +T
Sbjct: 128 WPERVGKLVLMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTI---ENLKLMMDIFVFDTSD 184
Query: 240 QTD 242
TD
Sbjct: 185 LTD 187
>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene,
isopropylbenzene, META-cleavage compound hydrolase;
1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB:
1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A
2d0d_A
Length = 282
Score = 36.9 bits (86), Expect = 0.006
Identities = 30/132 (22%), Positives = 45/132 (34%), Gaps = 30/132 (22%)
Query: 69 GAPVFF---YCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSP 125
G PV A + + L +K + RV+ + +G + P
Sbjct: 25 GQPVILIHGSGPGVSAYANWRLTIPAL---SKFY--RVIAPDMVGFGFT--------DRP 71
Query: 126 RLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPH 185
Y + +VD I + DA L I A I G ++GG LA L+Y
Sbjct: 72 ENYNY-----SKDSWVDHIIGIMDA--LEIEKA-----HIV-GNAFGGGLAIATALRYSE 118
Query: 186 IVQG-ALASSAP 196
V L +A
Sbjct: 119 RVDRMVLMGAAG 130
>2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088,
agrobacterium tumefaciens STR. C58 structural genomics,
PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP:
c.69.1.14
Length = 251
Score = 36.9 bits (85), Expect = 0.006
Identities = 18/129 (13%), Positives = 42/129 (32%), Gaps = 17/129 (13%)
Query: 77 GNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQT 136
G+E+ F L + + + + +G++ F +
Sbjct: 73 GDENQFFDFGARL------LPQATILSPVGDVSEHGAARFFRRTGEGVYDMVDLERATGK 126
Query: 137 LADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAP 196
+ADF+ + ++ PVI G S G + + ++ P + A+
Sbjct: 127 MADFIKANR-----------EHYQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPL 175
Query: 197 MFQTNDLAP 205
+ ++P
Sbjct: 176 IPFEPKISP 184
>1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged
active site, prolyl peptidase; 1.80A {Thermoplasma
acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A
1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A*
1xqx_A* 1xqy_A 1xqv_A
Length = 293
Score = 36.4 bits (85), Expect = 0.009
Identities = 28/129 (21%), Positives = 43/129 (33%), Gaps = 15/129 (11%)
Query: 167 FGGSYGGMLAFWLR--LKYPHIVQGA-LASSAPMFQTNDLAPCDIYYKEVTKIYRDVSPK 223
G SYGG LA L +KY ++G ++ + + E+ YRD K
Sbjct: 102 MGSSYGGALA--LAYAVKYQDHLKGLIVSGGLSSVPL-TVKEMNRLIDELPAKYRDAIKK 158
Query: 224 CEENIRNSWTFINTELQTDSGRVEFSREWNLCSSLKTQVDVAIFKRYLSDM--YTTMAMT 281
S ++ N E Q V + +L S +V Y Y M
Sbjct: 159 YGS----SGSYENPEYQEA---VNYFYHQHLLRSEDWPPEVLKSLEYAERRNVYRIMNGP 211
Query: 282 NYPYPSNFL 290
N + +
Sbjct: 212 NEFTITGTI 220
>3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold,
2-arachidonyl-glycerol, M associated, hydrolase,
hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A
{Homo sapiens} PDB: 3jw8_A 3jwe_A*
Length = 303
Score = 36.5 bits (85), Expect = 0.009
Identities = 23/126 (18%), Positives = 38/126 (30%), Gaps = 25/126 (19%)
Query: 85 FAENLGFLWESAKRFSAR---VVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFV 141
E+ G E A+ V +H +G S ++ DF
Sbjct: 51 AGEHSGRYEELARMLMGLDLLVFAHDHVGHGQS----------EGERMVVS------DFH 94
Query: 142 DVIQSLEDASRLR--IGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQ 199
+ D + + + PV G S GG +A + P G + S P+
Sbjct: 95 VFV---RDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLIS-PLVL 150
Query: 200 TNDLAP 205
N +
Sbjct: 151 ANPESA 156
>3e0x_A Lipase-esterase related protein; APC60309, clostridium
acetobutylicum ATCC 824, structural genomics, PSI-2;
HET: MSE; 1.45A {Clostridium acetobutylicum}
Length = 245
Score = 36.1 bits (84), Expect = 0.011
Identities = 16/113 (14%), Positives = 34/113 (30%), Gaps = 22/113 (19%)
Query: 93 WESAKRFSA--RVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDA 150
+ +++ +L++ + +G S P ++ +A+F+
Sbjct: 32 FGELEKYLEDYNCILLDLKGHGESKGQCPSTVYG--------YIDNVANFIT-------- 75
Query: 151 SRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQG-ALASSAPMFQTND 202
+ G S GG + + LK V+ S F D
Sbjct: 76 ---NSEVTKHQKNITLIGYSMGGAIVLGVALKKLPNVRKVVSLSGGARFDKLD 125
>1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1
interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23
Length = 210
Score = 35.3 bits (81), Expect = 0.017
Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 20/138 (14%)
Query: 102 RVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKP 161
R V ++ G S K ++P G L LA VD A +
Sbjct: 63 RAVAIDLPGLGHS-----KEAAAPAPIGELAPGSFLAAVVD---------------ALEL 102
Query: 162 HPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTNDLAPCDIYYKEVTKIYRDVS 221
P + S GM + + G + + + A +Y D
Sbjct: 103 GPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDKINAANYASVKTPALIVYGDQD 162
Query: 222 PKCEENIRNSWTFINTEL 239
P + + + N +
Sbjct: 163 PMGQTSFEHLKQLPNHRV 180
>3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase
fold, carboxylesterase, Ser- hydrolase; 2.00A
{Streptococcus mutans}
Length = 292
Score = 35.3 bits (81), Expect = 0.019
Identities = 21/165 (12%), Positives = 45/165 (27%), Gaps = 31/165 (18%)
Query: 46 TYVSNQTFPLKYLINDEFWDEDGGAPVFFYC---GNEDAIETFAENLGFLWESAKRFSAR 102
+ + + L+ + G P F + G + FA + L
Sbjct: 17 SMAALNKEMVNTLLGPIYTCHREGNPCFVFLSGAGFFSTADNFANIIDKL---PDSI--G 71
Query: 103 VVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPH 162
++ ++ G S + L D+V+ I + + + +
Sbjct: 72 ILTIDAPNSGYS--------PVSNQANV-----GLRDWVNAILMIFEHFKFQ-------- 110
Query: 163 PVIAFGGSYGGMLAFWLRLKYPHIVQG--ALASSAPMFQTNDLAP 205
+ S GG A + + G L + M +
Sbjct: 111 SYLLCVHSIGGFAALQIMNQSSKACLGFIGLEPTTVMIYRAGFSS 155
>2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct
initiative, midwest center for structural genomics,
MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP:
c.69.1.14
Length = 226
Score = 34.4 bits (79), Expect = 0.028
Identities = 27/156 (17%), Positives = 51/156 (32%), Gaps = 22/156 (14%)
Query: 54 PLKYLINDEFWDEDGGAPVFFYC----GNEDAIETFAENLGFLWESAKRFSARVVLVEHR 109
+K++ +D PV GNE + AE + A S R ++E+
Sbjct: 25 MMKHVFQKG---KDTSKPVLLLLHGTGGNELDLLPLAE---IVDSEASVLSVRGNVLENG 78
Query: 110 YYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGG 169
F + + + L +F+D F + ++A G
Sbjct: 79 MPR---FFRRLAEGIFDEEDLIFRTKELNEFLDEAAKEYK---------FDRNNIVAIGY 126
Query: 170 SYGGMLAFWLRLKYPHIVQGALASSAPMFQTNDLAP 205
S G +A L Y + ++GA+ + +
Sbjct: 127 SNGANIAASLLFHYENALKGAVLHHPMVPRRGMQLA 162
>3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, alpha-beta hydrolase fold,
hydrolase; 2.00A {Oleispira antarctica}
Length = 282
Score = 34.5 bits (80), Expect = 0.034
Identities = 17/110 (15%), Positives = 29/110 (26%), Gaps = 24/110 (21%)
Query: 96 AKRFSARVVLVEHRYYG-SSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLR 154
K+F V++ ++ G S L Y ++ A DV + L
Sbjct: 52 EKQF--TVIVFDYVGSGQSDLESFSTK-------RYSSLE-GYAK--DVEEILV------ 93
Query: 155 IGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGA--LASSAPMFQTND 202
A V G S ++A + + S
Sbjct: 94 ---ALDLVNVSIIGHSVSSIIAGIASTHVGDRISDITMICPSPCFMNFPP 140
>1j1i_A META cleavage compound hydrolase; carbazole degradation, META
cleavage product hydrolase, histidine tagged protein,
alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP:
c.69.1.10
Length = 296
Score = 34.3 bits (79), Expect = 0.041
Identities = 23/151 (15%), Positives = 44/151 (29%), Gaps = 42/151 (27%)
Query: 63 FWDEDG----------GAPVFF---YCGNEDAIETFAENLGFLWESAKRFSARVVLVEHR 109
F + G G PV ++ + + L A+ + RV+ ++
Sbjct: 20 FVNAGGVETRYLEAGKGQPVILIHGGGAGAESEGNWRNVIPIL---ARHY--RVIAMD-- 72
Query: 110 YYGSSLP-FGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFG 168
+ FG ++ Y T + + A + V G
Sbjct: 73 -----MLGFG---KTAKPDIEY-----TQDRRIRHLHDFIKA--MNFDG-----KVSIVG 112
Query: 169 GSYGGMLAFWLRLKYPHIVQG-ALASSAPMF 198
S GG + + + +V L SA +
Sbjct: 113 NSMGGATGLGVSVLHSELVNALVLMGSAGLV 143
>1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha
sandwich, PSI, protein structure initiative; 1.50A
{Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A
3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B*
Length = 318
Score = 34.4 bits (79), Expect = 0.041
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 9/69 (13%)
Query: 111 YGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGS 170
+G +L + K + Y V ++VI S ++ RIG GGS
Sbjct: 131 HGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVT---------GGS 181
Query: 171 YGGMLAFWL 179
GG L
Sbjct: 182 QGGGLTIAA 190
>3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein,
alpha/beta-hydrolases fold, structur genomics; HET: MSE;
1.66A {Pectobacterium atrosepticum SCRI1043}
Length = 191
Score = 33.4 bits (76), Expect = 0.057
Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 17/103 (16%)
Query: 100 SARVVLVEHRYYGSSLPFGPK---SLSSPRLSGYLTVAQ---TLADFVDVIQSLEDASRL 153
+VLV S + S R + + Q AD + ++
Sbjct: 17 QLTMVLV-PGLRDS----DDEHWQSHWERRFPHWQRIRQREWYQADLDRWVLAIRRE--- 68
Query: 154 RIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAP 196
+ PVI G S+G + A + + + G + +
Sbjct: 69 -LSVC--TQPVILIGHSFGALAACHVVQQGQEGIAGVMLVAPA 108
>3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration
switch protein, hydrolase ACTI lyase; 2.20A {Vibrio
vulnificus} PDB: 3our_A
Length = 415
Score = 33.8 bits (77), Expect = 0.073
Identities = 22/156 (14%), Positives = 47/156 (30%), Gaps = 28/156 (17%)
Query: 67 DGGAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSS--LPFGPKSLSS 124
D PV D+ + + + ++ V+ G S P
Sbjct: 190 DKPHPVVIVSAGLDS--LQTDMWRLFRDHLAKHDIAMLTVDMPSVGYSSKYPLTEDY--- 244
Query: 125 PRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYP 184
++ ++ + S+ R+G G +GG L
Sbjct: 245 ---------SRLHQAVLNELFSIPYVDHHRVGL---------IGFRFGGNAMVRLSFLEQ 286
Query: 185 HIVQGALASSAPMFQTNDLAPCDIYYKEVTKIYRDV 220
++ + AP+ +D+ +++ K+Y DV
Sbjct: 287 EKIKACVILGAPI---HDIFASPQKLQQMPKMYLDV 319
>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron
aquisition, structural genomics, PSI-2, protein
structure initiative; HET: CIT; 1.80A {Shigella flexneri
2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A*
3c8h_A 3mga_A*
Length = 403
Score = 33.4 bits (76), Expect = 0.084
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 128 SGYLTVAQTLADFV--DVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPH 185
+ L V +++ ++ + A V+A G S+GG+ A + L +P
Sbjct: 244 AHELPCNADFWLAVQQELLPLVKVIAPFSDRAD---RTVVA-GQSFGGLSALYAGLHWPE 299
Query: 186 IVQGALASSAPMFQTND 202
L+ S + +
Sbjct: 300 RFGCVLSQSGSYWWPHR 316
>3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold,
cyanogenesis; 2.50A {Arabidopsis thaliana}
Length = 258
Score = 33.0 bits (75), Expect = 0.094
Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 132 TVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGAL 191
Q + + + L + + + + VI G S+GG+ +P ++ +
Sbjct: 47 RPIQAVETVDEYSKPLIET----LKSLPENEEVILVGFSFGGINIALAADIFPAKIKVLV 102
Query: 192 ASSAPMF 198
+A +
Sbjct: 103 FLNAFLP 109
>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase;
alpha/beta hydrolase, META-cleavage pathway; 2.1A
{Arthrobacter nicotinovorans} SCOP: c.69.1.41
Length = 386
Score = 33.4 bits (76), Expect = 0.095
Identities = 19/141 (13%), Positives = 31/141 (21%), Gaps = 21/141 (14%)
Query: 65 DEDGGAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSS 124
+ G P G ++ E + + G F K +
Sbjct: 147 EGPGPHPAVIMLGGLES---TKEESFQMENLVLDRGMATATFDGP--GQGEMFEYKRI-- 199
Query: 125 PRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYP 184
D+ ++ D L A + + G S GG A P
Sbjct: 200 ------------AGDYEKYTSAVVDL--LTKLEAIRNDAIGVLGRSLGGNYALKSAACEP 245
Query: 185 HIVQGALASSAPMFQTNDLAP 205
+ DL
Sbjct: 246 RLAACISWGGFSDLDYWDLET 266
>3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase,
hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F}
PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A*
Length = 267
Score = 33.0 bits (75), Expect = 0.11
Identities = 9/64 (14%), Positives = 21/64 (32%), Gaps = 9/64 (14%)
Query: 136 TLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGA--LAS 193
+D++ + + + +I G + GG+ +P + A L+
Sbjct: 62 NFSDYLSPLMEF-------MASLPANEKIILVGHALGGLAISKAMETFPEKISVAVFLSG 114
Query: 194 SAPM 197
P
Sbjct: 115 LMPG 118
>2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid
indole alkaloids, PNAE, hydrolase, serine esterase; HET:
CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A*
Length = 264
Score = 32.6 bits (74), Expect = 0.13
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 136 TLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSA 195
T D+ + + + + + V+ G S+GGM YP + A+ SA
Sbjct: 60 TFRDYSEPLMEV-------MASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSA 112
Query: 196 PM 197
M
Sbjct: 113 MM 114
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A
{Escherichia coli} PDB: 3bf8_A
Length = 255
Score = 32.0 bits (73), Expect = 0.23
Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 27/108 (25%)
Query: 93 WES-AKRFSA--RVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLED 149
A+ ++ V+ R +G S P+ P ++ Y +AQ L D +D
Sbjct: 32 LGVLARDLVNDHNIIQVDVRNHGLS----PRE---PVMN-YPAMAQDLVDTLD------- 76
Query: 150 ASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQG-ALASSAP 196
A + G S GG L P + AP
Sbjct: 77 --------ALQIDKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAP 116
>2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS,
non-ribosomal peptide synthetase, type II thioesterase,
antibiotic biosynthesis; NMR {Bacillus subtilis} PDB:
2ron_A
Length = 242
Score = 31.7 bits (72), Expect = 0.25
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 19/89 (21%)
Query: 128 SGYLTVAQTLADFVDVI------------QSLEDASRL--RIGAAFKPH---PVIAFGGS 170
+ + + L +++ ++ED L P + FG S
Sbjct: 27 ASFRPLHAFLQGECEMLAAEPPGHGTNQTSAIEDLEELTDLYKQELNLRPDRPFVLFGHS 86
Query: 171 YGGMLAFWL--RLKYPHIVQGALASSAPM 197
GGM+ F L +L+ I A+ SA
Sbjct: 87 MGGMITFRLAQKLEREGIFPQAVIISAIQ 115
>3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta
hydrolase, PLP degradation, E-2-
(acetamidomethylene)succinate; 2.26A {Mesorhizobium
loti}
Length = 314
Score = 32.0 bits (73), Expect = 0.27
Identities = 26/114 (22%), Positives = 36/114 (31%), Gaps = 28/114 (24%)
Query: 84 TFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDV 143
F + L + RF + V+ R +G S P +GY D+ D
Sbjct: 83 VFEPLMIRL---SDRF--TTIAVDQRGHGLS--------DKPE-TGY-----EANDYADD 123
Query: 144 IQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQG-ALASSAP 196
I L L G I G S G + KYP +V+ P
Sbjct: 124 IAGLIRT--LARG------HAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFTP 169
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 31.7 bits (72), Expect = 0.28
Identities = 20/121 (16%), Positives = 34/121 (28%), Gaps = 22/121 (18%)
Query: 85 FAENLGFLWESAKRFSAR---VVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFV 141
+ + A+ + + R + + +T AQ L D
Sbjct: 37 WGGSQHHSLVRAREAVGLGCICMTFDLRGHEGY----------ASMRQSVTRAQNLDDIK 86
Query: 142 DVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTN 201
L + H + G SYGG L+ L + P LA +P +
Sbjct: 87 AAYDQLASLPYV------DAHSIAVVGLSYGGYLSALLTRERP---VEWLALRSPALYKD 137
Query: 202 D 202
Sbjct: 138 A 138
>1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein,
structural genomics, protein structure initiative, PSI;
HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB:
1y7i_A* 1y7h_A*
Length = 273
Score = 31.5 bits (71), Expect = 0.31
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 136 TLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSA 195
TL D+ + L + + VI G S GGM KYP + A+ +A
Sbjct: 54 TLYDYTLPLMEL-------MESLSADEKVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAA 106
Query: 196 PM 197
M
Sbjct: 107 FM 108
>3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga
maritima} PDB: 3doi_A
Length = 380
Score = 31.2 bits (70), Expect = 0.51
Identities = 6/43 (13%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 164 VIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTNDLAPC 206
+ G S GG + +++P + A + +
Sbjct: 265 IYITGLSMGGYGTWTAIMEFPELFA-AAIPICGGGDVSKVERI 306
>2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase,
alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter
nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A*
Length = 276
Score = 30.9 bits (70), Expect = 0.52
Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 26/103 (25%)
Query: 96 AKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRI 155
F RV++ R +G LS + + + V + D L +
Sbjct: 51 DADF--RVIVPNWRGHG---------LSPSEVPDF-----GYQEQVKDALEILDQ--LGV 92
Query: 156 GAAFKPHPVIAFGGSYGGMLAFWLRLKY-PHIVQG-ALASSAP 196
PV S+GG + L + P +
Sbjct: 93 ETF---LPV---SHSHGGWVLVELLEQAGPERAPRGIIMDWLM 129
>1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A
{Streptomyces lividans} SCOP: c.69.1.12
Length = 275
Score = 30.7 bits (70), Expect = 0.65
Identities = 23/108 (21%), Positives = 36/108 (33%), Gaps = 27/108 (25%)
Query: 102 RVVLVEHRYYG-SSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFK 160
RV+ + R +G S P + T A DV E A
Sbjct: 50 RVIAHDRRGHGRSDQPSTGHDMD------------TYAA--DVAALTE---------ALD 86
Query: 161 PHPVIAFGGSYGG-MLAFWLRLKYPHIVQGA--LASSAPMFQTNDLAP 205
+ G S GG +A ++ P V A +++ P+ +D P
Sbjct: 87 LRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKSDTNP 134
>2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond
hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia
xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A*
3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A
Length = 286
Score = 30.4 bits (69), Expect = 0.70
Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 33/152 (21%)
Query: 96 AKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYL--TVAQTLADFVDVIQSLEDASRL 153
+ RV+L + + S + + A+ + +D + ++ A
Sbjct: 61 DAGY--RVILKDSPGFNKS--------DAVVMDEQRGLVNARAVKGLMDALD-IDRAH-- 107
Query: 154 RIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQG-ALASSAPMFQTNDLAPCDIYYKE 212
++ G + GG A L+YP + L + + K
Sbjct: 108 ----------LV--GNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKL 155
Query: 213 VTKIYRDVSPKCEENIRN--SWTFINTELQTD 242
+ K+Y + S E ++ + L T+
Sbjct: 156 LFKLYAEPSY---ETLKQMLQVFLYDQSLITE 184
>2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK;
1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A*
2wug_A* 2vf2_A
Length = 291
Score = 30.4 bits (69), Expect = 0.75
Identities = 23/123 (18%), Positives = 31/123 (25%), Gaps = 33/123 (26%)
Query: 77 GNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLT--VA 134
+ F+ N+ L A+ F V+ V+ YG S G A
Sbjct: 47 PGAASWTNFSRNIAVL---ARHF--HVLAVDQPGYGHSDK--------RAEHGQFNRYAA 93
Query: 135 QTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGG-SYGGMLAFWLRLKYPHIVQG-ALA 192
L D + L G + GG A L YP L
Sbjct: 94 MALKGLFDQLG-LGRV---------------PLVGNALGGGTAVRFALDYPARAGRLVLM 137
Query: 193 SSA 195
Sbjct: 138 GPG 140
>2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase,
luciferase, oxidoreductase; 1.40A {Renilla reniformis}
PDB: 2pse_A 2psj_A* 2psh_A 2psf_A
Length = 318
Score = 30.5 bits (69), Expect = 0.76
Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 24/151 (15%)
Query: 102 RVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKP 161
R ++ + G S Y L D + + + L P
Sbjct: 71 RCIIPDLIGMGKS--------GKSGNGSY-----RLLDHYKYLTAWFELLNL-------P 110
Query: 162 HPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTNDLAPCDIYYKEVTKIYRDVS 221
+I G +G LAF ++ ++ + + + + D + I S
Sbjct: 111 KKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVD---VIESWDEWPDIEEDIALIKS 167
Query: 222 PKCEENIRNSWTFINTELQTDSGRVEFSREW 252
+ E+ + + F+ T L + R + E
Sbjct: 168 EEGEKMVLENNFFVETVLPSKIMR-KLEPEE 197
>1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive
mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP:
c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A*
Length = 297
Score = 30.4 bits (68), Expect = 0.80
Identities = 20/158 (12%), Positives = 54/158 (34%), Gaps = 24/158 (15%)
Query: 47 YVSNQTFPLKYLINDEFWDEDGGAPVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLV 106
Y N+ + + YL++ +E+ N+ ++ ++ +++V
Sbjct: 63 YDPNKKYNIFYLMHGGGENENTIF------SNDVKLQNILDHA-----IMNGELEPLIVV 111
Query: 107 EHRYYGSSLPFGPKSLSSPRLSGYLT-VAQTLADFVDV-IQSLEDASRLRIGAAFKPHPV 164
+ G + + Q + FV+ + +++ + AA + H
Sbjct: 112 TPTFNGGNCTAQ----------NFYQEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRG 161
Query: 165 IAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTND 202
G + GG+ +++ + V + S + N
Sbjct: 162 FG-GFAMGGLTTWYVMVNCLDYVAYFMPLSGDYWYGNS 198
>3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural
genomics, protein structure initiative, PSI-2; HET: MSE;
1.50A {Novosphingobium aromaticivorans}
Length = 285
Score = 30.0 bits (68), Expect = 0.90
Identities = 25/109 (22%), Positives = 33/109 (30%), Gaps = 26/109 (23%)
Query: 93 WES-AKRFSA--RVVLVEHRYYG-SSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLE 148
+E A R + RV+ E R G S P Y Q L D ++
Sbjct: 45 FEDLATRLAGDWRVLCPEMRGRGDSDYAKDP--------MTY-QPMQYLQDLEALL---- 91
Query: 149 DASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQG-ALASSAP 196
A +A G S GG+L L P + L P
Sbjct: 92 --------AQEGIERFVAIGTSLGGLLTMLLAAANPARIAAAVLNDVGP 132
>3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase;
2.60A {Pseudomonas putida}
Length = 264
Score = 29.8 bits (67), Expect = 0.99
Identities = 10/109 (9%), Positives = 26/109 (23%), Gaps = 25/109 (22%)
Query: 96 AKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRI 155
A+ F V+ + R + + + + + + DA I
Sbjct: 45 ARDF--HVICPDWRGHDAK--------QTDS-GDF-----DSQTLAQDLLAFIDA--KGI 86
Query: 156 GAAFKPHPVIAFGGSYGGMLAFWLRLKY-PHIVQGALASSAPMFQTNDL 203
V S+G + + + + + +
Sbjct: 87 RDF---QMV---STSHGCWVNIDVCEQLGAARLPKTIIIDWLLQPHPGF 129
>2rau_A Putative esterase; NP_343859.1, putative lipase, structural
genomics, joint CEN structural genomics, JCSG; HET: PG4
UNL; 1.85A {Sulfolobus solfataricus P2}
Length = 354
Score = 30.3 bits (67), Expect = 0.99
Identities = 20/126 (15%), Positives = 38/126 (30%), Gaps = 20/126 (15%)
Query: 74 FYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTV 133
+ D ++ L R V +++R + + LS G+ T
Sbjct: 74 VHYTIPDYRKSIVLYLA-------RNGFNVYTIDYRTHYVPPFLKDRQLSFTANWGWSTW 126
Query: 134 AQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKY-PHIVQGA-L 191
+ + V I+ + G S+GG+ A Y + ++G L
Sbjct: 127 ISDIKEVVSFIK-----------RDSGQERIYLAGESFGGIAALNYSSLYWKNDIKGLIL 175
Query: 192 ASSAPM 197
P
Sbjct: 176 LDGGPT 181
>2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold;
1.90A {Plesiocystis pacifica}
Length = 297
Score = 29.7 bits (67), Expect = 1.2
Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 22/97 (22%)
Query: 102 RVVLVEHRYYG-SSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFK 160
RVV + +G S P + Y T + + DA +L
Sbjct: 75 RVVAPDLFGFGRSDKP--------TDDAVY-----TFGFHRRSLLAFLDALQLE------ 115
Query: 161 PHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPM 197
V +GG+L L + P +V + + +
Sbjct: 116 --RVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTAL 150
>3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase,
catalysis, protonation state, AB initio calculations,
substrate bindin; 1.05A {Hevea brasiliensis} SCOP:
c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A
3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A
7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A
1dwp_A ...
Length = 257
Score = 29.6 bits (66), Expect = 1.3
Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 136 TLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSA 195
+ ++ + + + + A VI G S GG+ KY + A+ ++
Sbjct: 53 SFDEYSEPLLTF-------LEALPPGEKVILVGESCGGLNIAIAADKYCEKIAAAVFHNS 105
Query: 196 PM 197
+
Sbjct: 106 VL 107
>1r3d_A Conserved hypothetical protein VC1974; structural genomics,
hydrolase, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP:
c.69.1.35
Length = 264
Score = 29.6 bits (67), Expect = 1.3
Identities = 15/126 (11%), Positives = 29/126 (23%), Gaps = 34/126 (26%)
Query: 90 GFL-----WES-AKRFSA---RVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADF 140
G L W+ + + ++ +G++ + + +
Sbjct: 24 GLLGSGADWQPVLSHLARTQCAALTLDLPGHGTN--------PERHCDNFAEAVEMIEQT 75
Query: 141 VDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGA----LASSAP 196
V PVI G S GG L + +
Sbjct: 76 VQ---------AHVTS----EVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGHF 122
Query: 197 MFQTND 202
Q N+
Sbjct: 123 GLQENE 128
>1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR
structure initiative, PSI, joint center for structural
GENO hydrolase; 2.10A {Thermotoga maritima} SCOP:
c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A*
Length = 337
Score = 29.5 bits (66), Expect = 1.3
Identities = 28/123 (22%), Positives = 37/123 (30%), Gaps = 18/123 (14%)
Query: 117 FGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLA 176
F + + PR Y V V+ S + RI A GGS GG +A
Sbjct: 156 FMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIA---------GGSQGGGIA 206
Query: 177 FWL-----RLKYPHIVQGALASSAPMFQTNDLAPCDIYYKEVTKIYRDVSPKCEENIRNS 231
+ + K L Q D P Y E+T + K E R
Sbjct: 207 LAVSALSKKAKALLCDVPFLCHFRRAVQLVDTHP----YAEITNFLKTHRDKEEIVFRTL 262
Query: 232 WTF 234
F
Sbjct: 263 SYF 265
>2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural
mycobacterium tuberculosis structural proteomics
project, X hydrolase; 2.10A {Mycobacterium tuberculosis}
PDB: 2zjf_A*
Length = 356
Score = 29.6 bits (66), Expect = 1.4
Identities = 22/96 (22%), Positives = 31/96 (32%), Gaps = 22/96 (22%)
Query: 102 RVVLVEHRYYG-SSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFK 160
RVV ++ R YG SS K+ L G D V V+ S
Sbjct: 56 RVVAIDQRGYGRSSKYRVQKAYRIKELVG---------DVVGVLDSY------------G 94
Query: 161 PHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAP 196
G +G +A+ +P G + S P
Sbjct: 95 AEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVP 130
>3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold,
hydrolase; 1.72A {Homo sapiens}
Length = 239
Score = 29.4 bits (66), Expect = 1.5
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 155 IGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASS 194
+ + K + ++ G S GG +A L + V G A S
Sbjct: 111 VKSGIKKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFALS 150
>3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610,
O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A
{Bacillus anthracis str}
Length = 377
Score = 29.2 bits (66), Expect = 1.8
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 136 TLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGA--LAS 193
T D + L + I + H V+ G S GGM+A + YPH+V+ + +
Sbjct: 128 TFLDVARMQCELIKD--MGIA---RLHAVM--GPSAGGMIAQQWAVHYPHMVERMIGVIT 180
Query: 194 SA 195
+
Sbjct: 181 NP 182
>2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa
transferase; 2.20A {Leptospira interrogans} SCOP:
c.69.1.40
Length = 366
Score = 29.1 bits (66), Expect = 1.8
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 136 TLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGA--LAS 193
++ D V + L ++ L I K V GGS GGM A + YP+ + +AS
Sbjct: 126 SIQDMVKAQKLLVES--LGIE---KLFCVA--GGSMGGMQALEWSIAYPNSLSNCIVMAS 178
Query: 194 SA 195
+A
Sbjct: 179 TA 180
>3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7;
2.10A {Thermoanaerobacterium SP}
Length = 346
Score = 29.0 bits (65), Expect = 2.0
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 11/77 (14%)
Query: 122 LSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRL 181
+ + A ++ ++ + R+G G S GG L+
Sbjct: 169 DDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGV---------MGPSQGGGLSLACAA 219
Query: 182 KYPHIVQGALASSAPMF 198
P + + S P
Sbjct: 220 LEPRV--RKVVSEYPFL 234
>1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A
{Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A
1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A
2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A
Length = 310
Score = 29.0 bits (65), Expect = 2.2
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 8/63 (12%)
Query: 136 TLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSA 195
T + + +L + LR + +GG L L + P + + +A
Sbjct: 98 TFEFHRNFLLALIERLDLR--------NITLVVQDWGGFLGLTLPMADPSRFKRLIIMNA 149
Query: 196 PMF 198
+
Sbjct: 150 XLM 152
>3tg7_A Hexon protein, late protein 2; adenovirus structural protein, with
NEW finding featuring PO binding to human coagulation
factor X; 1.57A {Human adenovirus 5} PDB: 2bvi_F 1p30_A
1vsz_A 3iyn_A 1p2z_A* 2obe_A
Length = 951
Score = 29.2 bits (65), Expect = 2.4
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 283 YPYPSNFLTPLPGNPVKVDVAIFKRYLSDMYTTMAMTNYPYPSNFLT 329
YP+NF PL G VD K++L D + P+ SNF++
Sbjct: 839 QAYPANFPYPLIG-KTAVDSITQKKFLCDRT----LWRIPFSSNFMS 880
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 28.6 bits (64), Expect = 2.5
Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 129 GYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQ 188
+TV + D ++ ++ +R + G + GG++A L YP +++
Sbjct: 94 ENMTVLNEIEDANAILNYVKTDPHVR--------NIYLVGHAQGGVVASMLAGLYPDLIK 145
Query: 189 GA-LASSAPMFQ 199
L + A +
Sbjct: 146 KVVLLAPAATLK 157
>2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the
alpha/beta superfamily, structural genomics; HET: MSE
TLA P6G; 1.35A {Xanthomonas campestris PV}
Length = 176
Score = 28.4 bits (63), Expect = 2.6
Identities = 15/115 (13%), Positives = 28/115 (24%), Gaps = 27/115 (23%)
Query: 96 AKRFSAR---VVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASR 152
A+ + + + +++
Sbjct: 26 AEVAERLGWTHERPDFTDLDAR-------------RDLGQLGDVRGRLQRLLEIAR---- 68
Query: 153 LRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTNDLAPCD 207
AA + PV+ G S G +A + L + AL P + L D
Sbjct: 69 ----AATEKGPVVLAGSSLGSYIAAQVSL---QVPTRALFLMVPPTKMGPLPALD 116
>2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway,
coenzyme A, structure-functi studies, alpha-beta
hydrolase fold; 1.65A {Haemophilus influenzae} SCOP:
c.69.1.40
Length = 377
Score = 28.8 bits (65), Expect = 2.7
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 136 TLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGA--LAS 193
+ D V V ++L + L I +I GGS+GGM A + YP + L S
Sbjct: 135 VVQDIVKVQKALLEH--LGIS---HLKAII--GGSFGGMQANQWAIDYPDFMDNIVNLCS 187
Query: 194 SA 195
S
Sbjct: 188 SI 189
>1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane
dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase;
0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB:
1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A
1iz8_A* 1k5p_A 1k63_A 1k6e_A
Length = 302
Score = 28.6 bits (64), Expect = 2.7
Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 17/100 (17%)
Query: 102 RVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKP 161
R++ + G S SG A+ D + +L +A L
Sbjct: 57 RLIACDLIGMGDS--------DKLDPSGPE--RYAYAEHRDYLDALWEALDLG------- 99
Query: 162 HPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTN 201
V+ +G L F ++ VQG A
Sbjct: 100 DRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIE 139
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta
propeller, hydrolase, oligop SIZE selectivity; HET: GOL;
1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A*
1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Length = 582
Score = 28.6 bits (64), Expect = 3.0
Identities = 10/48 (20%), Positives = 14/48 (29%), Gaps = 11/48 (22%)
Query: 137 LADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYP 184
++ + AS L I G SYGG + P
Sbjct: 423 VSAAARWARESGLASELYI-----------MGYSYGGYMTLCALTMKP 459
>3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase;
2.20A {Unidentified}
Length = 309
Score = 28.5 bits (64), Expect = 3.4
Identities = 16/97 (16%), Positives = 25/97 (25%), Gaps = 22/97 (22%)
Query: 102 RVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKP 161
R V + G S + P Y L D V + DA L
Sbjct: 58 RAVAPDLIGMGDS--------AKPD-IEY-----RLQDHVAYMDGFIDALGLD------- 96
Query: 162 HPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMF 198
++ +G ++ P V A +
Sbjct: 97 -DMVLVIHDWGSVIGMRHARLNPDRVAAVAFMEALVP 132
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*
Length = 251
Score = 28.1 bits (63), Expect = 3.9
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 9/68 (13%)
Query: 137 LADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAP 196
L + + V+ + + G S GG+ I++ L +P
Sbjct: 83 LTNILAVVDYAKKLDF--------VTDIYMAGHSQGGLSVMLAAAMERDIIKA-LIPLSP 133
Query: 197 MFQTNDLA 204
++A
Sbjct: 134 AAMIPEIA 141
>1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida}
PDB: 4dgq_A
Length = 276
Score = 28.0 bits (63), Expect = 4.1
Identities = 21/104 (20%), Positives = 32/104 (30%), Gaps = 28/104 (26%)
Query: 96 AKRFSARVVLVEHRYYG-SSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLR 154
A + RVV + R +G SS + + AD DV +
Sbjct: 47 AHGY--RVVAHDRRGHGRSSQVWDGHDMD------------HYAD--DVAAVVA------ 84
Query: 155 IGAAFKPHPVIAFGGSYGGMLAFWLRLKYP-HIVQGA-LASSAP 196
+ G S GG ++P V A L ++ P
Sbjct: 85 ---HLGIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAVP 125
>3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold
seven-stranded beta-sandwich, structural genomics,
structural genomics consortium, SGC; 2.40A {Homo
sapiens}
Length = 422
Score = 27.9 bits (61), Expect = 5.1
Identities = 5/57 (8%), Positives = 17/57 (29%), Gaps = 6/57 (10%)
Query: 137 LADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALAS 193
L F + + + +++ + G S G + + ++ +
Sbjct: 206 LEYFEEAVCYMLQHPQVK------GPGIGLLGISLGADICLSMASFLKNVSATVSIN 256
>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown
function; 2.60A {Thermus thermophilus}
Length = 242
Score = 27.6 bits (62), Expect = 5.3
Identities = 10/51 (19%), Positives = 13/51 (25%), Gaps = 5/51 (9%)
Query: 129 GYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPV--IAF-GGSYGGMLA 176
G L D + L L V + GS G+L
Sbjct: 130 GRFPQPTPLLQVADRLGQLTGMQPLVHQ--GGLDHVETVILVSGSGTGLLP 178
>2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B-
hydrolase fold, acyltransferase, acetyl coenzyme A,
antibiotic biosynthesis; HET: COA; 2.2A {Acremonium
chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A*
Length = 444
Score = 27.7 bits (62), Expect = 5.9
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 26/96 (27%)
Query: 111 YGSSLPFGPKSLSSPRLSG--------YLTVAQTLADFVDVIQSLEDASRLRIGAAFKPH 162
+GS+ GP S T+ D V + + + D L + +
Sbjct: 155 FGSA---GPCSPDPDAEGQRPYGAKFPRTTIR----DDVRIHRQVLDR--LGVR---QIA 202
Query: 163 PVIAFGGSYGGMLAF-WLRLKYPHIVQGA--LASSA 195
V+ G S GGM W P V+ +A+S
Sbjct: 203 AVV--GASMGGMHTLEWA-FFGPEYVRKIVPIATSC 235
>1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A
{Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21
Length = 763
Score = 27.8 bits (61), Expect = 6.2
Identities = 19/129 (14%), Positives = 33/129 (25%), Gaps = 14/129 (10%)
Query: 134 AQTLADFVDVIQSL--------EDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPH 185
Q + VI L I A++ V G SY G +A+
Sbjct: 304 YQQIYSMTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTGV- 362
Query: 186 IVQGALASSAPMFQTNDLAPCDIYYKEVTKIYRDVSPKCEENIRNSWTFINTELQTDSGR 245
L + + Y + P + ++ + T+ D +
Sbjct: 363 ---EGLELILAEAGISSWY--NYYRENGLVRSPGGFPGEDLDVLAALTYSRNLDGADFLK 417
Query: 246 VEFSREWNL 254
E L
Sbjct: 418 GNAEYEKRL 426
>1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl
esterase, ferulic acid esterase, FAE_XYNZ, XYNZ,
structural genomics; 1.75A {Clostridium thermocellum}
SCOP: c.69.1.2 PDB: 1jt2_A*
Length = 268
Score = 27.4 bits (61), Expect = 6.5
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 166 AFGG-SYGGMLAFWLRLKYPHIVQGALASSAPMFQTND 202
A G S GG +F + L SA +
Sbjct: 148 AIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAPNTYPN 185
>3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta
hydrolase, alternative splicing, hydrolase,
mitochondrion, polymorphism, serine esterase; 2.10A
{Homo sapiens}
Length = 446
Score = 27.5 bits (60), Expect = 6.6
Identities = 11/62 (17%), Positives = 17/62 (27%), Gaps = 6/62 (9%)
Query: 137 LADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAP 196
L F + + L K V G S GG L + I + + +
Sbjct: 222 LEYFEEAMNYLLSHPE------VKGPGVGLLGISKGGELCLSMASFLKGITAAVVINGSV 275
Query: 197 MF 198
Sbjct: 276 AN 277
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO
structural genomics, JCSG, protein structure initiative,
PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP:
e.22.1.2
Length = 376
Score = 27.3 bits (61), Expect = 7.2
Identities = 20/100 (20%), Positives = 28/100 (28%), Gaps = 15/100 (15%)
Query: 70 APVFFYCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSG 129
P + G AI E L RF R +V F K++
Sbjct: 19 FPGRYVQG-AGAINILEEEL-------SRFGERAFVVID-------DFVDKNVLGENFFS 63
Query: 130 YLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGG 169
T + S E+ RL + V+ GG
Sbjct: 64 SFTKVRVNKQIFGGECSDEEIERLSGLVEEETDVVVGIGG 103
>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter
autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A*
1aq6_A
Length = 253
Score = 27.2 bits (60), Expect = 7.7
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 6/82 (7%)
Query: 82 IETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFV 141
+E L + ++ R + + + L S +P + L L D
Sbjct: 75 LEPDESFLADMAQAYNRLTPYPDAAQCLAELAPLKRAILSNGAPDMLQALVANAGLTDSF 134
Query: 142 DVIQSLEDASRLRIGAAFKPHP 163
D + S++ FKPHP
Sbjct: 135 DAVISVDAKR------VFKPHP 150
>3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A
{Mycobacterium tuberculosis}
Length = 330
Score = 27.0 bits (60), Expect = 9.3
Identities = 19/112 (16%), Positives = 29/112 (25%), Gaps = 25/112 (22%)
Query: 86 AENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQ 145
A + + V+ +G S+ R G + V++
Sbjct: 94 AHTWDTV---IVGLGEPALAVDLPGHG---------HSAWREDGNYSPQLNSETLAPVLR 141
Query: 146 SLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQG-ALASSAP 196
L P G S GG+ A L P +V L P
Sbjct: 142 EL------------APGAEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDVTP 181
>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix
bundle, structural genomics protein structure
initiative; HET: PGE; 2.12A {Streptococcus mutans}
Length = 405
Score = 27.0 bits (59), Expect = 9.7
Identities = 25/173 (14%), Positives = 40/173 (23%), Gaps = 29/173 (16%)
Query: 26 LSTDAYTYETKFFDAKLDHFTYVSNQTFPLKYLINDEFWDEDGGAPVFFYCGNEDAIETF 85
+ L F + L ED G D +
Sbjct: 119 RMEKLFMLAVDNSKIPLKSIEV----PFEGELLPGYAIISEDKAQDTLIVVGGGDT--SR 172
Query: 86 AENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQ 145
+ L S V++V+ G + G D I
Sbjct: 173 EDLFYMLGYSGWEHDYNVLMVDLPGQGKNPNQGLHFE---------------VDARAAIS 217
Query: 146 SLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMF 198
++ D + + G S GG K I A +S P++
Sbjct: 218 AILDWYQAP------TEKIAIAGFSGGGYFTAQAVEKDKRIK--AWIASTPIY 262
>2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei
structural genomics consortium, TBSGC, hydrolase; 1.19A
{Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A
Length = 297
Score = 27.0 bits (60), Expect = 9.8
Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 17/97 (17%)
Query: 102 RVVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKP 161
R+V + G+S P Y + + D + +L DA L
Sbjct: 56 RLVACDLIGMGASDKLSPSGPDR-----Y-----SYGEQRDFLFALWDALDLG------- 98
Query: 162 HPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMF 198
V+ +G L F ++ VQG A +
Sbjct: 99 DHVVLVLHDWGSALGFDWANQHRDRVQGIAFMEAIVT 135
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.422
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,309,373
Number of extensions: 313593
Number of successful extensions: 841
Number of sequences better than 10.0: 1
Number of HSP's gapped: 827
Number of HSP's successfully gapped: 113
Length of query: 337
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 243
Effective length of database: 4,077,219
Effective search space: 990764217
Effective search space used: 990764217
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.9 bits)