RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1220
(337 letters)
>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase,
BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
Length = 121
Score = 34.3 bits (78), Expect = 0.005
Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 1/75 (1%)
Query: 141 VDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQT 200
V +++LEDA R++ ++ GG G+ V M +
Sbjct: 11 VHTLRTLEDARRIQ-AGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRA 69
Query: 201 NDLAPCDIYYKEVTK 215
D +
Sbjct: 70 APATLADFVARYHAA 84
>d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]}
Length = 285
Score = 33.6 bits (76), Expect = 0.026
Identities = 19/100 (19%), Positives = 29/100 (29%), Gaps = 7/100 (7%)
Query: 103 VVLVEHRYYGSSLPFGPKSLSS--PRLS--GYLTVAQTLADFVDVIQSLEDASR--LRIG 156
+VL H G G L G ++ E + I
Sbjct: 10 IVLA-HGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQLDTSEVRGEQLLQQVEEIV 68
Query: 157 AAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAP 196
A V G S+GG ++ P ++ A + AP
Sbjct: 69 ALSGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAP 108
>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas
putida [TaxId: 303]}
Length = 133
Score = 32.2 bits (72), Expect = 0.030
Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 11/111 (9%)
Query: 138 ADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGM-LAFWLRLKYPHIVQGALASSAP 196
A+ +++LEDA +R + ++ GG Y G+ +A H+
Sbjct: 13 ANNFRYLRTLEDAECIR-RQLIADNRLVVIGGGYIGLEVAATAIKANMHVT--------- 62
Query: 197 MFQTNDLAPCDIYYKEVTKIYRDVSPKCEENIRNSWTFINTELQTDSGRVE 247
+ T + V+ Y + + +IR E+ TD +V
Sbjct: 63 LLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVT 113
>d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase
{Penicillium funiculosum [TaxId: 28572]}
Length = 318
Score = 30.4 bits (68), Expect = 0.30
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 161 PHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPM 197
P+ V G + GG +A L + Y + A
Sbjct: 10 PNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGG 46
>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 137
Score = 29.0 bits (64), Expect = 0.40
Identities = 16/126 (12%), Positives = 34/126 (26%), Gaps = 6/126 (4%)
Query: 125 PR-LSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKY 183
PR LS + + + + D L + I GG G LA L K
Sbjct: 1 PRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKA 60
Query: 184 PHIVQGALASSAPMFQTNDLAPCDIYYKEVTKIYRDVSPKCEENIRNSWTFINTELQTDS 243
L + I + ++ + + + + + + +
Sbjct: 61 RA-----LGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGK 115
Query: 244 GRVEFS 249
++
Sbjct: 116 LLIKLK 121
>d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus
thermophilus [TaxId: 274]}
Length = 238
Score = 29.0 bits (63), Expect = 0.71
Identities = 8/78 (10%), Positives = 17/78 (21%)
Query: 161 PHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTNDLAPCDIYYKEVTKIYRDV 220
P+ GGS G +A L + + +
Sbjct: 104 GLPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPMKLPQGQVVEDPGVLALYQAPP 163
Query: 221 SPKCEENIRNSWTFINTE 238
+ + E ++
Sbjct: 164 ATRGEAYGGVPLLHLHGS 181
>d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida
antarctica), form b [TaxId: 34362]}
Length = 317
Score = 28.5 bits (63), Expect = 0.99
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 13/73 (17%)
Query: 134 AQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLKYPHIVQ--GAL 191
+ + + + + A + + S GG++A W +P I L
Sbjct: 80 TEYMVNAIT-----------ALYAGSGNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRL 128
Query: 192 ASSAPMFQTNDLA 204
+ AP ++ LA
Sbjct: 129 MAFAPDYKGTVLA 141
>d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374
{Mesorhizobium loti [TaxId: 381]}
Length = 209
Score = 28.5 bits (62), Expect = 1.1
Identities = 18/148 (12%), Positives = 30/148 (20%), Gaps = 18/148 (12%)
Query: 66 EDGGAPVFF---YCGNEDAIETFAENLGFLWESAKRFSARVVLVEHRYYGSSLPFGPKSL 122
++ +F +E + A + + F
Sbjct: 20 KESRECLFLLHGSGVDETTLVPLARRIA------PTATLVAARGRIPQEDGFRWFERIDP 73
Query: 123 SSPRLSGYLTVAQTLADFVDVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWLRLK 182
+ L A F + G S G L L L
Sbjct: 74 TRFEQKSILAETAAFAAFTNEAAKRHG---------LNLDHATFLGYSNGANLVSSLMLL 124
Query: 183 YPHIVQGALASSAPMFQTNDLAPCDIYY 210
+P IV+ A + A
Sbjct: 125 HPGIVRLAALLRPMPVLDHVPATDLAGI 152
>d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio
harveyi [TaxId: 669]}
Length = 302
Score = 28.4 bits (62), Expect = 1.2
Identities = 10/98 (10%), Positives = 28/98 (28%), Gaps = 21/98 (21%)
Query: 85 FAENLGFLWESAKRFSAR---VVLVEHRYYGSSLPFGPKSLSSPRLSGYLTVAQTLADFV 141
FA + A+ S V + ++ SS + + T+
Sbjct: 41 FARRMDHFAGLAEYLSTNGFHVFRYDSLHHVGL--------SSGSIDEF-----TMTTGK 87
Query: 142 DVIQSLEDASRLRIGAAFKPHPVIAFGGSYGGMLAFWL 179
+ + ++ + + + S +A+ +
Sbjct: 88 NSLCTVYHWLQTK-----GTQNIGLIAASLSARVAYEV 120
>d1p2za2 b.121.2.2 (A:651-962) Adenovirus hexon {Human adenovirus
type 2 [TaxId: 10515]}
Length = 312
Score = 27.8 bits (62), Expect = 1.9
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 284 PYPSNFLTPLPGNPVKVDVAIFKRYLSDMYTTMAMTNYPYPSNFL 328
YP+N PL G VD K++L D + P+ SNF+
Sbjct: 206 AYPANVPYPLIG-KTAVDSITQKKFLCDRT----LWRIPFSSNFM 245
>d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 267
Score = 27.2 bits (59), Expect = 2.9
Identities = 11/47 (23%), Positives = 17/47 (36%)
Query: 159 FKPHPVIAFGGSYGGMLAFWLRLKYPHIVQGALASSAPMFQTNDLAP 205
P A G + GG A L +P A + S ++ +N
Sbjct: 102 LAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTN 148
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.422
Gapped
Lambda K H
0.267 0.0413 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,295,550
Number of extensions: 60325
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 13
Length of query: 337
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 251
Effective length of database: 1,226,816
Effective search space: 307930816
Effective search space used: 307930816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)