Query psy12201
Match_columns 116
No_of_seqs 115 out of 736
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 21:25:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12201.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12201hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00125 PLA2c PLA2c: Phospholi 100.0 3.7E-40 8E-45 234.5 4.7 102 1-102 8-110 (115)
2 cd04707 otoconin_90 otoconin_9 100.0 1.3E-39 2.8E-44 232.4 5.4 102 1-104 5-109 (117)
3 KOG4087|consensus 100.0 1.8E-38 3.9E-43 232.0 3.4 107 1-107 28-136 (144)
4 PF00068 Phospholip_A2_1: Phos 100.0 3.9E-36 8.5E-41 213.1 1.3 104 1-104 8-112 (116)
5 smart00085 PA2c Phospholipase 100.0 6.7E-35 1.5E-39 207.6 5.4 101 1-101 8-110 (117)
6 cd00618 PLA2_like PLA2_like: P 99.9 7E-24 1.5E-28 140.7 5.6 78 14-93 1-83 (83)
7 cd04706 PLA2_plant PLA2_plant: 99.4 6.6E-14 1.4E-18 100.2 2.4 57 11-94 19-79 (117)
8 cd04704 PLA2_bee_venom_like PL 98.7 6.5E-09 1.4E-13 72.1 2.4 62 19-94 8-75 (97)
9 PF05826 Phospholip_A2_2: Phos 97.2 0.00011 2.3E-09 51.1 0.9 61 19-93 7-73 (99)
10 PF08398 Parvo_coat_N: Parvovi 95.9 0.0026 5.7E-08 41.3 0.5 37 19-55 6-45 (64)
11 cd04705 PLA2_group_III_like PL 95.8 0.0054 1.2E-07 43.0 1.6 50 31-94 33-82 (100)
12 PF06951 PLA2G12: Group XII se 55.7 7.4 0.00016 30.0 1.5 21 25-45 87-111 (184)
13 PF14703 DUF4463: Domain of un 32.8 18 0.00039 23.1 0.4 21 19-40 62-82 (85)
No 1
>cd00125 PLA2c PLA2c: Phospholipase A2, a family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids (PC or phosphatidylethanolamine), usually in a metal-dependent reaction, to generate lysophospholipid (LysoPL) and a free fatty acid (FA). The resulting products are either dietary or used in synthetic pathways for leukotrienes and prostaglandins. Often, arachidonic acid is released as a free fatty acid and acts as second messenger in signaling networks. Secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis (LysoPL and FA) cannot form bilayers leading to a change in membrane conformation and ultimately to a block in
Probab=100.00 E-value=3.7e-40 Score=234.50 Aligned_cols=102 Identities=41% Similarity=0.916 Sum_probs=92.7
Q ss_pred CeeeecCCCcccccCCcCCCCCCCCCCcccCCCchhhhhhhhhhcCCCCCCCCCceeeEEEEeCCceeeCCC-Cchhhhh
Q psy12201 1 MVSCSTGCDPLSYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYTGSNCPLFLEYFIPYVWTCFRGRPLCQRG-KSCSHRL 79 (116)
Q Consensus 1 Mi~c~tg~~~~~y~~YGC~Cg~~G~G~PvD~iD~cC~~hd~CY~~~~C~~~~~~~~~Y~~~~~~~~i~C~~~-~~C~r~l 79 (116)
||+++||++|++|++||||||+||+|+|||+|||||+.||.||+.+.-..+.|++.+|+|++.++.|+|.+. ++|+++|
T Consensus 8 MI~c~tgr~~~~Y~~YGCyCG~GG~G~PvD~~DrCC~~HD~CY~~~~~~~C~p~~~~Y~y~~~~~~i~C~~~~~~C~~~~ 87 (115)
T cd00125 8 MIKCTTGRSALDYNGYGCYCGLGGSGTPVDDTDRCCQVHDCCYDRAEKGGCSPYFTSYSYTCSDGQITCSDANDKCARAL 87 (115)
T ss_pred HHHHhcCCCHHHHhhcCCccCCCCCCCCcccHHHHHHHHHhHHhccccCCCccccccceEEEECCcceECcCCChHhHHH
Confidence 999999999999999999999999999999999999999999999943333477889999999999999754 9999999
Q ss_pred chhhHHHHHHhCcCCCCCCcccc
Q psy12201 80 CECDRRFSECLRPYSCPRYKAVC 102 (116)
Q Consensus 80 CeCDk~~A~cl~~~~~~~~~~~c 102 (116)
|||||+||+||++++|+.++...
T Consensus 88 CeCDr~aa~Cf~~~~yn~~~~~~ 110 (115)
T cd00125 88 CECDRAAALCFARAPYNPKYRNY 110 (115)
T ss_pred hHccHHHHHHHhhCcCChhhccC
Confidence 99999999999999998875544
No 2
>cd04707 otoconin_90 otoconin_90: Phospholipase A2-like domains present in otoconin-90 and otoconin-95, mammal proteins that are principal matrix proteins of calcitic otoconia. Interactions involving otoconin-90 may trigger or constitute key events in otoconia formation. The PLA2-like domains in otoconins may have lost their metal-binding sites.
Probab=100.00 E-value=1.3e-39 Score=232.43 Aligned_cols=102 Identities=33% Similarity=0.747 Sum_probs=92.2
Q ss_pred CeeeecCCCcccccCCcCCCCCCCCCCcccCCCchhhhhhhhhhcCC---CCCCCCCceeeEEEEeCCceeeCCCCchhh
Q psy12201 1 MVSCSTGCDPLSYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYTGSN---CPLFLEYFIPYVWTCFRGRPLCQRGKSCSH 77 (116)
Q Consensus 1 Mi~c~tg~~~~~y~~YGC~Cg~~G~G~PvD~iD~cC~~hd~CY~~~~---C~~~~~~~~~Y~~~~~~~~i~C~~~~~C~r 77 (116)
||+++||+++++|++||||||+||+|+|||+|||||+.||.||+.++ |.+ .++ ..|+|+++++.|+|+..+.|++
T Consensus 5 MI~c~tgr~~~~Y~~YGCyCG~GG~G~PvD~~DrCC~~HD~CY~~~~~~~C~~-~~~-~~Y~y~c~~~~i~C~~~~~C~~ 82 (117)
T cd04707 5 MLKCLTGRCPREFEDYGCYCGQEGEGLPVDELDRCCFQHRCCLEQASEMGCLQ-DRK-LSTEVTCVDHKPKCEGVSVCEK 82 (117)
T ss_pred HHhhhcCCCHHHHcccCCcccCCCCCCCcccchhHHHHhHHHHhhhhhcCCCC-CCC-cceEEEEECCccccCCCChHHH
Confidence 99999999999999999999999999999999999999999999884 542 123 5899999999999987889999
Q ss_pred hhchhhHHHHHHhCcCCCCCCcccccc
Q psy12201 78 RLCECDRRFSECLRPYSCPRYKAVCRS 104 (116)
Q Consensus 78 ~lCeCDk~~A~cl~~~~~~~~~~~c~~ 104 (116)
+||||||+||+||++++|+.+..+.+.
T Consensus 83 ~vCeCDk~aa~Cf~~~~Yn~~~~~~~~ 109 (117)
T cd04707 83 LLCTCDKTAAECMAAAHFNSSLNSLDV 109 (117)
T ss_pred HHhhccHHHHHHhccCCCCHhhccCCH
Confidence 999999999999999999988776554
No 3
>KOG4087|consensus
Probab=100.00 E-value=1.8e-38 Score=231.99 Aligned_cols=107 Identities=37% Similarity=0.831 Sum_probs=97.1
Q ss_pred CeeeecCCC-cccccCCcCCCCCCCCCCcccCCCchhhhhhhhhhcCCCCCCCCCceeeEEEEeCCceeeCC-CCchhhh
Q psy12201 1 MVSCSTGCD-PLSYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYTGSNCPLFLEYFIPYVWTCFRGRPLCQR-GKSCSHR 78 (116)
Q Consensus 1 Mi~c~tg~~-~~~y~~YGC~Cg~~G~G~PvD~iD~cC~~hd~CY~~~~C~~~~~~~~~Y~~~~~~~~i~C~~-~~~C~r~ 78 (116)
||+++||++ ++.|++||||||+||+|+|+|+|||||+.||.||+.++-..+.+|+..|+|+++++.|+|++ +..|+++
T Consensus 28 Mi~~vt~~~~~l~Y~~YGCyCGlGG~G~P~D~iDwCC~~HDcCY~~le~~gC~py~~~Ys~sc~n~~I~Cs~~~~~C~~~ 107 (144)
T KOG4087|consen 28 MIECVTGKSAALSYNKYGCYCGLGGSGQPKDAIDWCCHAHDCCYDRLEEKGCSPYTERYSWSCSNQSITCSDKNTECEAQ 107 (144)
T ss_pred HHHHHcCCCccceecCccccccCCCCCCccchHHHHHhcccHHHHHHHHcCCCccccceeeEeeCCeEEeCCCccHHHHH
Confidence 899999999 58999999999999999999999999999999999996445567899999999999999976 4899999
Q ss_pred hchhhHHHHHHhCcCCCCCCcccccccch
Q psy12201 79 LCECDRRFSECLRPYSCPRYKAVCRSNVF 107 (116)
Q Consensus 79 lCeCDk~~A~cl~~~~~~~~~~~c~~~~~ 107 (116)
||||||++|+||+|.+||.++...++.-.
T Consensus 108 lC~CDk~~a~C~~r~~yn~ky~~~~n~~c 136 (144)
T KOG4087|consen 108 LCECDKKAAECLKRTTYNKKYKYYPNRLC 136 (144)
T ss_pred HhhhhhHHHHHHhcCccchhhccCCCccc
Confidence 99999999999999999998776665433
No 4
>PF00068 Phospholip_A2_1: Phospholipase A2; InterPro: IPR001211 Phospholipase A2 (3.1.1.4 from EC) (PLA2) is a small lipolytic enzyme that releases fatty acids from the second carbon group of glycerol. It is involved in a number of physiologically important cellular processes, such as the liberation of arachidonic acid from membrane phospholipids []. It plays a pivotal role in the biosynthesis of prostaglandin and other mediators of inflammation. PLA2 has four to seven disulphide bonds and binds a calcium ion that is essential for activity. Within the active enzyme, the alpha amino group is involved in a conserved hydrogen-bonding network linking the N-terminal region to the active site. The side chains of two conserved residues, His and Asp, participate in the catalytic network. Many PLA2's are widely distributed in snakes, lizards, bees and mammals. In mammals there are at least four forms: pancreatic, membrane-associated as well as two less well characterised forms. The venom of most snakes contains multiple forms of PLA2. Some of them are presynaptic neurotoxins which inhibit neuromuscular transmission by blocking acetylcholine release from the nerve termini. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 1.; GO: 0004623 phospholipase A2 activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1OQS_F 1S6B_B 1XXW_B 1MH2_B 2RD4_B 1OZ6_A 2OSN_A 2PH4_B 1FDK_A 2BP2_A ....
Probab=100.00 E-value=3.9e-36 Score=213.13 Aligned_cols=104 Identities=42% Similarity=0.905 Sum_probs=91.0
Q ss_pred CeeeecCCCc-ccccCCcCCCCCCCCCCcccCCCchhhhhhhhhhcCCCCCCCCCceeeEEEEeCCceeeCCCCchhhhh
Q psy12201 1 MVSCSTGCDP-LSYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYTGSNCPLFLEYFIPYVWTCFRGRPLCQRGKSCSHRL 79 (116)
Q Consensus 1 Mi~c~tg~~~-~~y~~YGC~Cg~~G~G~PvD~iD~cC~~hd~CY~~~~C~~~~~~~~~Y~~~~~~~~i~C~~~~~C~r~l 79 (116)
||+++|+..+ ++|++||||||++|+|+|||+||++|+.|+.||+++.-..+.+++..|+|++..+.|+|+++++|+++|
T Consensus 8 Mi~~~~~~~~~~~y~~YGCyCg~~g~G~PvD~iD~~C~~h~~Cy~~~~~~~C~~~~~~Y~~~~~~~~i~C~~~~~C~~~l 87 (116)
T PF00068_consen 8 MIKCVTGKFPFFKYNDYGCYCGFGGKGQPVDEIDRCCRKHDQCYKCAKEKGCDPYFTSYSYSCSNKNITCSDNDSCERAL 87 (116)
T ss_dssp HHHHHHSSSHHHHHSSBTTTBSSSSSSS-SSHHHHHHHHHHHHHHHHTTTTSSTTTSS-EEEEETTEEEEESSSHHHHHH
T ss_pred HHHHhhCCCcHHHHccccccCCCCCCCCCcccccchhHHhHHHHHHHhcccccccccceEEEEecCCcccCCCCchhHHh
Confidence 8999998886 699999999999999999999999999999999999544455667799999999999997799999999
Q ss_pred chhhHHHHHHhCcCCCCCCcccccc
Q psy12201 80 CECDRRFSECLRPYSCPRYKAVCRS 104 (116)
Q Consensus 80 CeCDk~~A~cl~~~~~~~~~~~c~~ 104 (116)
||||++||+||++++|+.++.+.+.
T Consensus 88 CeCD~~~A~cl~~~~yn~~~~~~~~ 112 (116)
T PF00068_consen 88 CECDKAFAECLARNSYNKKYKNFDR 112 (116)
T ss_dssp HHHHHHHHHHHHHTGB-GGGBTTTH
T ss_pred hhCcHHHHHHHHhCccCHHHhCCCc
Confidence 9999999999999999988776544
No 5
>smart00085 PA2c Phospholipase A2.
Probab=100.00 E-value=6.7e-35 Score=207.57 Aligned_cols=101 Identities=38% Similarity=0.780 Sum_probs=90.6
Q ss_pred CeeeecCCCc-ccccCCcCCCCCCCCCCcccCCCchhhhhhhhhhcCCCCCCCCCceeeEEEEeCCceeeCC-CCchhhh
Q psy12201 1 MVSCSTGCDP-LSYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYTGSNCPLFLEYFIPYVWTCFRGRPLCQR-GKSCSHR 78 (116)
Q Consensus 1 Mi~c~tg~~~-~~y~~YGC~Cg~~G~G~PvD~iD~cC~~hd~CY~~~~C~~~~~~~~~Y~~~~~~~~i~C~~-~~~C~r~ 78 (116)
||+++||++| ++|++||||||+||+|+|||+||+||+.||.||+.++-....++++.|+|+++++.|+|.. .++|++.
T Consensus 8 mi~c~t~~~~~~~y~~YGCyCG~gg~G~pvD~~D~CC~~HD~Cy~~~~~~~C~~~~~~y~~~c~~~~~~C~~~~~~C~~~ 87 (117)
T smart00085 8 MIQCATGKRAWLSYGDYGCYCGWGGSGTPVDATDRCCFVHDCCYGKAEKEGCNPKTTTYSYSCDNGFITCGGKNTACLVF 87 (117)
T ss_pred HHHHhcCCCcccchhccCcccCCCCCCCccccccchhhhcCchhhhcccCCCcccccceEEEEECCcceECcCCCcccee
Confidence 8999999776 7999999999999999999999999999999999884234456789999999999999964 7899999
Q ss_pred hchhhHHHHHHhCcCCCCCCccc
Q psy12201 79 LCECDRRFSECLRPYSCPRYKAV 101 (116)
Q Consensus 79 lCeCDk~~A~cl~~~~~~~~~~~ 101 (116)
+||||+++|+||+++|+|.+...
T Consensus 88 ~C~CD~~aa~Cf~~~~yn~~~~~ 110 (117)
T smart00085 88 VCECDRAAAICFAKNPYNKKNYN 110 (117)
T ss_pred ecccCHHHHHHhhhCccChhccc
Confidence 99999999999999999887443
No 6
>cd00618 PLA2_like PLA2_like: Phospholipase A2, a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids (PC or phosphatidylethanolamine), usually in a metal-dependent reaction, to generate lysophospholipid (LysoPL) and a free fatty acid (FA). The resulting products are either dietary or used in synthetic pathways for leukotrienes and prostaglandins. Often, arachidonic acid is released as a free fatty acid and acts as second messenger in signaling networks. Secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis (LysoPL and FA) cannot form bilayers leading to a change in membrane conformation and ultimately
Probab=99.89 E-value=7e-24 Score=140.73 Aligned_cols=78 Identities=40% Similarity=0.855 Sum_probs=64.1
Q ss_pred cCCcCCCCCCCC----CCcccCCCchhhhhhhhhhcCCCCCCCCCceeeEEEEeCCceee-CCCCchhhhhchhhHHHHH
Q psy12201 14 KGYGCYCGFLGS----GYPVDPIDRCCELHDWCYTGSNCPLFLEYFIPYVWTCFRGRPLC-QRGKSCSHRLCECDRRFSE 88 (116)
Q Consensus 14 ~~YGC~Cg~~G~----G~PvD~iD~cC~~hd~CY~~~~C~~~~~~~~~Y~~~~~~~~i~C-~~~~~C~r~lCeCDk~~A~ 88 (116)
+.||||||+||+ |+|||+||+||+.||.||+.+.-.....+...|.| ..+.++| .+.+.|++.+|+||++||+
T Consensus 1 ~~ygc~CG~g~~~~~~g~p~D~~D~CC~~HD~Cy~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~c~~~~C~CD~~~a~ 78 (83)
T cd00618 1 LPYGCYCGPGGSACPSGQPVDETDRCCRKHDCCYDQISDGGCCDGCLSYSF--SEGGVTCLTNSDLCTRSHCDCDRRLAI 78 (83)
T ss_pred CCcCcccCCCCcCCCCCCCCCcchhhhhhCccHhhhhhccCCCCCcceeee--cCCceeECCCCChhhHhhCcccHHHHH
Confidence 479999999999 99999999999999999999853222223345655 5666888 5779999999999999999
Q ss_pred HhCcC
Q psy12201 89 CLRPY 93 (116)
Q Consensus 89 cl~~~ 93 (116)
||+++
T Consensus 79 Cl~~~ 83 (83)
T cd00618 79 CLARA 83 (83)
T ss_pred HhhhC
Confidence 99864
No 7
>cd04706 PLA2_plant PLA2_plant: Plant-specific sub-family of Phospholipase A2, a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. Enzymatically active PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids; secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis cannot form bilayers leading to a change in membrane conformation and ultimately to a block in the release of neurotransmitters. PLA2 may form dimers or oligomers. This sub-family does not appear to have a conserved active site and metal-binding loop.
Probab=99.42 E-value=6.6e-14 Score=100.16 Aligned_cols=57 Identities=35% Similarity=0.766 Sum_probs=47.4
Q ss_pred ccccCCcCCCCCCCCC----CcccCCCchhhhhhhhhhcCCCCCCCCCceeeEEEEeCCceeeCCCCchhhhhchhhHHH
Q psy12201 11 LSYKGYGCYCGFLGSG----YPVDPIDRCCELHDWCYTGSNCPLFLEYFIPYVWTCFRGRPLCQRGKSCSHRLCECDRRF 86 (116)
Q Consensus 11 ~~y~~YGC~Cg~~G~G----~PvD~iD~cC~~hd~CY~~~~C~~~~~~~~~Y~~~~~~~~i~C~~~~~C~r~lCeCDk~~ 86 (116)
..|..||||||+|++| .|||+||+||+.||.||+... + + ..-|+||.+|
T Consensus 19 ~~y~~YG~yCG~g~~g~~~~~P~D~lD~CC~~HD~Cy~~~~----------~--------------~---~~~c~C~~~f 71 (117)
T cd04706 19 PPFLRYGKYCGPGYSGCPGERPCDDLDACCMTHDACVQAKK----------N--------------D---YLSLECNEKF 71 (117)
T ss_pred CcccccCcccCCCCCCCCCCCCcchhhHHHHhCcCcccCCC----------C--------------C---cCCchHHHHH
Confidence 3599999999999988 899999999999999997431 0 0 2468999999
Q ss_pred HHHhCcCC
Q psy12201 87 SECLRPYS 94 (116)
Q Consensus 87 A~cl~~~~ 94 (116)
..|+++..
T Consensus 72 ~~Cl~~~~ 79 (117)
T cd04706 72 KNCVRRFR 79 (117)
T ss_pred HHHHHHhc
Confidence 99998644
No 8
>cd04704 PLA2_bee_venom_like PLA2_bee_venom_like: A sub-family of Phospholipase A2, similar to bee venom PLA2. PLA2 is a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. Enzymatically active PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids; secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis cannot form bilayers leading to a change in membrane conformation and ultimately to a block in the release of neurotransmitters. PLA2 may form dimers or oligomers. Bee venom PLA2 has fewer conserved disulfide bridges than most canonical PLA2s.
Probab=98.72 E-value=6.5e-09 Score=72.14 Aligned_cols=62 Identities=26% Similarity=0.577 Sum_probs=47.0
Q ss_pred CCCCCCCCC-cc-----cCCCchhhhhhhhhhcCCCCCCCCCceeeEEEEeCCceeeCCCCchhhhhchhhHHHHHHhCc
Q psy12201 19 YCGFLGSGY-PV-----DPIDRCCELHDWCYTGSNCPLFLEYFIPYVWTCFRGRPLCQRGKSCSHRLCECDRRFSECLRP 92 (116)
Q Consensus 19 ~Cg~~G~G~-Pv-----D~iD~cC~~hd~CY~~~~C~~~~~~~~~Y~~~~~~~~i~C~~~~~C~r~lCeCDk~~A~cl~~ 92 (116)
|||.|.... +. .++|+||++||.|+.-+. +. .|+|.. .+.....+..|+||++|+.||++
T Consensus 8 WCG~Gn~a~~~~dlG~~~~tD~CCr~HD~C~~~i~--~~-----~~kyg~-------~N~~~~t~~~C~CD~~f~~CL~~ 73 (97)
T cd04704 8 WCGPGNIATNYSDLGAFRETDKCCREHDHCPDIIS--AG-----EYKYGL-------TNTRLFTRSHCDCDNRFRQCLKN 73 (97)
T ss_pred ecCCCCCCCCcccccCccccchHHHccccCcCccc--cc-----ccccCc-------cCCCccccccCcHHHHHHHHHHH
Confidence 888887664 44 689999999999997763 11 233332 14578899999999999999998
Q ss_pred CC
Q psy12201 93 YS 94 (116)
Q Consensus 93 ~~ 94 (116)
..
T Consensus 74 ~~ 75 (97)
T cd04704 74 VN 75 (97)
T ss_pred cC
Confidence 65
No 9
>PF05826 Phospholip_A2_2: Phospholipase A2; InterPro: IPR001211 Phospholipase A2 (3.1.1.4 from EC) (PLA2) is a small lipolytic enzyme that releases fatty acids from the second carbon group of glycerol. It is involved in a number of physiologically important cellular processes, such as the liberation of arachidonic acid from membrane phospholipids []. It plays a pivotal role in the biosynthesis of prostaglandin and other mediators of inflammation. PLA2 has four to seven disulphide bonds and binds a calcium ion that is essential for activity. Within the active enzyme, the alpha amino group is involved in a conserved hydrogen-bonding network linking the N-terminal region to the active site. The side chains of two conserved residues, His and Asp, participate in the catalytic network. Many PLA2's are widely distributed in snakes, lizards, bees and mammals. In mammals there are at least four forms: pancreatic, membrane-associated as well as two less well characterised forms. The venom of most snakes contains multiple forms of PLA2. Some of them are presynaptic neurotoxins which inhibit neuromuscular transmission by blocking acetylcholine release from the nerve termini. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 1.; GO: 0004623 phospholipase A2 activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1POC_A.
Probab=97.24 E-value=0.00011 Score=51.07 Aligned_cols=61 Identities=28% Similarity=0.556 Sum_probs=35.2
Q ss_pred CCCCCCCCC------cccCCCchhhhhhhhhhcCCCCCCCCCceeeEEEEeCCceeeCCCCchhhhhchhhHHHHHHhCc
Q psy12201 19 YCGFLGSGY------PVDPIDRCCELHDWCYTGSNCPLFLEYFIPYVWTCFRGRPLCQRGKSCSHRLCECDRRFSECLRP 92 (116)
Q Consensus 19 ~Cg~~G~G~------PvD~iD~cC~~hd~CY~~~~C~~~~~~~~~Y~~~~~~~~i~C~~~~~C~r~lCeCDk~~A~cl~~ 92 (116)
|||.|..-. .--++|+||++||.|..-+. +. ...|.. .+ ...=-..-|+||++|..||++
T Consensus 7 WCG~gn~a~~~~dlG~~~~tD~CCR~HD~C~~~I~--~~---~~k~gl--~N-------~~~~T~~hC~Cd~~f~~CL~~ 72 (99)
T PF05826_consen 7 WCGPGNIAKNYSDLGEFKETDRCCREHDHCPDKIP--PG---ETKYGL--HN-------PRPFTISHCDCDSRFYQCLKN 72 (99)
T ss_dssp SSBSS---SSTT---SSHHHHHHHHHHHT-SSEE---TT----EETTE--E---------SSS-EEBHHHHHHHHHHHHT
T ss_pred ccCCCCCccCcccccccHHHHHHHHhhccCCCccC--CC---cccccc--cc-------CCcCceeecCcccHHHHHHHH
Confidence 777763311 12468999999999986553 11 112222 11 122235689999999999998
Q ss_pred C
Q psy12201 93 Y 93 (116)
Q Consensus 93 ~ 93 (116)
.
T Consensus 73 ~ 73 (99)
T PF05826_consen 73 V 73 (99)
T ss_dssp S
T ss_pred c
Confidence 4
No 10
>PF08398 Parvo_coat_N: Parvovirus coat protein VP1; InterPro: IPR013607 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This is the N-terminal region of the Parvovirus VP1 coat protein []; its function is not known. ; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=95.90 E-value=0.0026 Score=41.31 Aligned_cols=37 Identities=30% Similarity=0.348 Sum_probs=28.3
Q ss_pred CCCCC---CCCCcccCCCchhhhhhhhhhcCCCCCCCCCc
Q psy12201 19 YCGFL---GSGYPVDPIDRCCELHDWCYTGSNCPLFLEYF 55 (116)
Q Consensus 19 ~Cg~~---G~G~PvD~iD~cC~~hd~CY~~~~C~~~~~~~ 55 (116)
|.|+| -.|.||+.+|+.+++||..|....-...+||+
T Consensus 6 YlGPgn~l~~g~Pv~~~D~aA~~HD~aY~~~lk~G~NPY~ 45 (64)
T PF08398_consen 6 YLGPGNPLDNGEPVNPVDAAAREHDEAYDELLKHGDNPYL 45 (64)
T ss_pred ccCCCCCcCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCce
Confidence 45554 46899999999999999999998444445543
No 11
>cd04705 PLA2_group_III_like PLA2_group_III_like: A sub-family of Phospholipase A2, similar to human group III PLA2. PLA2 is a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. Enzymatically active PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids; secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis cannot form bilayers leading to a change in membrane conformation and ultimately to a block in the release of neurotransmitters. PLA2 may form dimers or oligomers.
Probab=95.77 E-value=0.0054 Score=42.96 Aligned_cols=50 Identities=32% Similarity=0.473 Sum_probs=32.7
Q ss_pred CCCchhhhhhhhhhcCCCCCCCCCceeeEEEEeCCceeeCCCCchhhhhchhhHHHHHHhCcCC
Q psy12201 31 PIDRCCELHDWCYTGSNCPLFLEYFIPYVWTCFRGRPLCQRGKSCSHRLCECDRRFSECLRPYS 94 (116)
Q Consensus 31 ~iD~cC~~hd~CY~~~~C~~~~~~~~~Y~~~~~~~~i~C~~~~~C~r~lCeCDk~~A~cl~~~~ 94 (116)
++|+||+.||.|-.-+. +....|. ..+ ...=...-|+||++|..||+...
T Consensus 33 ~~DrCCR~HD~Cp~~I~-----~~~~k~g--l~N-------~~~~tisHCdCD~rf~~CL~~~n 82 (100)
T cd04705 33 EPDRCCWKHKQCPGHII-----PPFSSDG--HHN-------FHLHSVSHCDCDSRLKDCLRLSS 82 (100)
T ss_pred chhhhhhhhhcCccccC-----Ccccccc--eec-------CCCcccccccHHHHHHHHHHHcC
Confidence 58999999999866552 1111222 211 12223567999999999999864
No 12
>PF06951 PLA2G12: Group XII secretory phospholipase A2 precursor (PLA2G12); InterPro: IPR010711 This family consists of several group XII secretory phospholipase A2 precursor (PLA2G12) (3.1.1.4 from EC) proteins. Group XII and group V PLA(2)s are thought to participate in helper T cell immune response through release of immediate second signals and generation of downstream eicosanoids [].; GO: 0004623 phospholipase A2 activity, 0005509 calcium ion binding, 0016042 lipid catabolic process, 0005576 extracellular region
Probab=55.65 E-value=7.4 Score=30.00 Aligned_cols=21 Identities=38% Similarity=1.062 Sum_probs=15.9
Q ss_pred CCCccc----CCCchhhhhhhhhhc
Q psy12201 25 SGYPVD----PIDRCCELHDWCYTG 45 (116)
Q Consensus 25 ~G~PvD----~iD~cC~~hd~CY~~ 45 (116)
.|.++| +.=.||-.||.||+-
T Consensus 87 ~G~~~d~~iP~~t~CCn~HDiCYdT 111 (184)
T PF06951_consen 87 LGLQIDIGIPAMTKCCNQHDICYDT 111 (184)
T ss_pred cCCcccCCCCchhccchhhhhHHHc
Confidence 455555 367899999999983
No 13
>PF14703 DUF4463: Domain of unknown function (DUF4463)
Probab=32.75 E-value=18 Score=23.09 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=16.2
Q ss_pred CCCCCCCCCcccCCCchhhhhh
Q psy12201 19 YCGFLGSGYPVDPIDRCCELHD 40 (116)
Q Consensus 19 ~Cg~~G~G~PvD~iD~cC~~hd 40 (116)
++|+.| |.-||+||+.-.+..
T Consensus 62 ~~~~~g-~~kVDaIdyy~~el~ 82 (85)
T PF14703_consen 62 FLGLFG-GKKVDAIDYYREELK 82 (85)
T ss_pred cCCCCC-CCcchHHHHHHHHHH
Confidence 556667 899999999876543
Done!