RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12201
(116 letters)
>1n28_B Phospholipase A2, membrane associated; hydrolase; 1.50A {Homo
sapiens} SCOP: a.133.1.2 PDB: 1n29_A 1kvo_A* 1ayp_A
1db4_A* 1db5_A* 1dcy_A* 1j1a_A* 1bbc_A* 1kqu_A* 1pod_A
1poe_A*
Length = 124
Score = 82.4 bits (203), Expect = 8e-22
Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 1 MVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYTGSNCPLFLEYFIPYV 59
M+ +TG + SY YGC+CG G G P D DRCC D CY F+ Y
Sbjct: 8 MIKLTTGKEAALSYGFYGCHCGVGGRGSPKDATDRCCVTQDCCYKRLEKRGCGTKFLSYK 67
Query: 60 WTCFRGRPLCQRGKSCSHRLCECDRRFSECLRPYSCP 96
++ R C + SC +LCECD+ + C
Sbjct: 68 FSNSGSRITCAKQDSCRSQLCECDKAAATCFARNKTT 104
>1g0z_A Phospholipase A2; toxin; 2.18A {Bungarus caeruleus} SCOP: a.133.1.2
PDB: 1u4j_A* 1g2x_A 2osn_A 1dpy_A 1fe5_A 1tc8_A* 1po8_A*
Length = 118
Score = 79.2 bits (195), Expect = 1e-20
Identities = 38/93 (40%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 1 MVSCSTGCDPLSYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYT-GSNCPLFLEYFIPYV 59
M+ C+ SY GYGCYCG+ GSG PVD +DRCC HD CY +N P Y
Sbjct: 8 MIQCAGTRTWTSYIGYGCYCGYGGSGTPVDELDRCCYTHDHCYNKAANIPGCNPLIKTYS 67
Query: 60 WTCFRGRPLCQ-RGKSCSHRLCECDRRFSECLR 91
+TC + C SC+ +C+CDR + C
Sbjct: 68 YTCTKPNITCNDTSDSCARFICDCDRTAAICFA 100
>1le6_A Group X secretory phospholipase A2; human phosphatidylcholine
2-acylhydrolase GX, GX SPLA2, SPLA2-X; 1.97A {Homo
sapiens} SCOP: a.133.1.2 PDB: 1le7_A
Length = 123
Score = 78.5 bits (193), Expect = 2e-20
Identities = 34/95 (35%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 1 MVSCSTGCDPLSYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYTGSNCPLFLEYFIPYVW 60
V C P++Y YGC+CG G G P D ID CC HD CYT + Y W
Sbjct: 8 TVGCVGPRTPIAYMKYGCFCGLGGHGQPRDAIDWCCHGHDCCYTRAEEAGCSPKTERYSW 67
Query: 61 TCFRGRPLCQRGKS-CSHRLCECDRRFSECLRPYS 94
C LC ++ C LC+CD+ + CL
Sbjct: 68 QCVNQSVLCGPAENKCQELLCKCDQEIANCLAQTE 102
>1oz6_A Phospholipase A2; enzyme, PLA2, hydrolase; 2.60A {Echis
carinatus} SCOP: a.133.1.2
Length = 120
Score = 78.5 bits (193), Expect = 3e-20
Identities = 36/92 (39%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 1 MVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYTGSNCPLFLEYFIPYV 59
M+ TG P+ SY YGCYCG+ G G P D DRCC +HD CYT Y
Sbjct: 8 MIWNRTGKLPILSYGSYGCYCGWGGQGPPKDATDRCCLVHDCCYTRVGD--CSPKMTLYS 65
Query: 60 WTCFRGRPLCQRGKSCSHRLCECDRRFSECLR 91
+ G +C C +CECDR + CL
Sbjct: 66 YRFENGDIICDNKDPCKRAVCECDREAAICLG 97
>2g58_A Phospholipase A2 VRV-PL-VIIIA; phospholipase A2, diars,
hydrolase-hydrolase inhibitor compl; HET: PHQ; 0.98A
{Daboia russellii pulchella} SCOP: a.133.1.2 PDB:
1cl5_A 1fb2_A* 1jq8_A 1jq9_A 1kpm_A* 1oxl_A* 1fv0_A*
1q7a_A 1skg_A* 1sv3_A* 1sv9_A* 1sxk_A* 1tdv_A 1tg1_A*
1tg4_A 1th6_A* 1sqz_A 1tjq_A* 1tk4_A 1tp2_A* ...
Length = 121
Score = 78.2 bits (192), Expect = 3e-20
Identities = 38/92 (41%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 1 MVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYTGSNCPLFLEYFIPYV 59
M+ TG + SY YGCYCG+ G G P D DRCC +HD CY N P Y
Sbjct: 8 MILEETGKLAIPSYSSYGCYCGWGGKGTPKDATDRCCFVHDCCY--GNLPDCNPKSDRYK 65
Query: 60 WTCFRGRPLCQRGKSCSHRLCECDRRFSECLR 91
+ G +C++G SC +R+CECD+ + C R
Sbjct: 66 YKRVNGAIVCEKGTSCENRICECDKAAAICFR 97
>3vbz_A Phospholipase A2 homolog, taipoxin beta chain; phospholipase A2
fold, PLA2 fold, neurotoxin, binding; 1.76A {Oxyuranus
scutellatus scutellatus} PDB: 3vc0_A
Length = 118
Score = 77.7 bits (191), Expect = 4e-20
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Query: 1 MVSCS--TGCDPLSYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYTGSNCPLFLEYFIPY 58
M+ C+ L + YGCYCG +G G PVD +DRCC++HD CY + Y
Sbjct: 8 MIECAIRNRRPALDFMNYGCYCGTVGRGTPVDDLDRCCQVHDECYATAEKHGCYPSLTTY 67
Query: 59 VWTCFRGRPLCQRGKSCSHRLCECDRRFSECLRPYS-CPRYKAVCRS 104
W C + C C +C CD ++CL P + +
Sbjct: 68 QWECRQVGNECNSKTQCEVFVCACDLAAAKCLAQEDYNPAHFNINTG 114
>1jlt_A Phospholipase A2 inhibitor; heterodimer complex, hydrolase,
PLA2-activity; 1.40A {Vipera ammodytes ammodytes} SCOP:
a.133.1.2 PDB: 1vpi_A 1aok_A 1q5t_A 1oqs_A 2h4c_A
Length = 122
Score = 77.8 bits (191), Expect = 5e-20
Identities = 32/92 (34%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 1 MVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYTGSNCPLFLEYFIPYV 59
M+ TG + + SY YGCYCG+ G D DRCC D CY N Y
Sbjct: 8 MILQKTGKEAVHSYAIYGCYCGWGGQARAQDATDRCCFAQDCCYGRVND--CNPKTATYT 65
Query: 60 WTCFRGRPLCQRGKSCSHRLCECDRRFSECLR 91
++ G +C C +CECDR + CL
Sbjct: 66 YSFENGDIVCGDNDLCLRAVCECDRAAAICLG 97
>3dih_A Phospholipase A2 homolog, ammodytin L; phospholipase A2 fold,
myotoxin, secreted, toxin; 2.60A {Vipera ammodytes
ammodytes} PDB: 3ux7_A
Length = 122
Score = 77.8 bits (191), Expect = 5e-20
Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 1 MVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYTGSNCPLFLEYFIPYV 59
M+ T +PL SY YGC+CG G P D DRCC +H CY + Y
Sbjct: 8 MIQEETDKNPLTSYSFYGCHCGLGNKGKPKDATDRCCFVHSCCY--AKLSDCSPKTNRYE 65
Query: 60 WTCFRGRPLCQRGKSCSHRLCECDRRFSECLR 91
+ G +C C ++CECDR + C R
Sbjct: 66 YHRENGAIVCGSSTPCKKQICECDRAAAICFR 97
>3jql_A Phospholipase A2 isoform 3; phospholipase A2, hexapeptide,
hydrolase, calcium, disulfide bond, lipid degradation,
metal-binding, secreted; 1.20A {Naja sagittifera} PDB:
1mf4_A 3jq5_A 1ln8_A 3jti_A 3nju_A* 3osh_A* 3q4y_A
1t37_A 1zm6_A 3gci_A 1yxl_A 1oxr_A 1td7_A* 1sz8_A 1a3d_A
1a3f_A 1psh_A 2osh_A 1poa_A 1pob_A* ...
Length = 119
Score = 77.2 bits (190), Expect = 6e-20
Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 1 MVSCSTGC-DPLSYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYT-GSNCPLFLEYFIPY 58
M+ C+ + YGCYCG GSG PVD +DRCC+ HD CY N YF Y
Sbjct: 8 MIQCTVPSRSWADFADYGCYCGKGGSGTPVDDLDRCCQTHDNCYNEAENISGCRPYFKTY 67
Query: 59 VWTCFRGRPLCQ-RGKSCSHRLCECDRRFSECLR 91
+ C +G C+ +C+ +C+CDR + C
Sbjct: 68 SYECTQGTLTCKGDNNACAASVCDCDRLAAICFA 101
>1vip_A Phospholipase A2; hydrolase, anticoagulant; 2.20A {Daboia
russellii russellii} SCOP: a.133.1.2
Length = 121
Score = 77.0 bits (189), Expect = 1e-19
Identities = 37/92 (40%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 1 MVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYTGSNCPLFLEYFIPYV 59
M+ TG +PL SY YGCYCG+ G G P D DRCC +HD CY Y
Sbjct: 8 MIVKMTGKNPLSSYSDYGCYCGWGGKGKPQDATDRCCFVHDCCYEKVKS--CKPKLSLYS 65
Query: 60 WTCFRGRPLCQRGKSCSHRLCECDRRFSECLR 91
++ G +C SC +CECDR + C R
Sbjct: 66 YSFQNGGIVCGDNHSCKRAVCECDRVAATCFR 97
>1mc2_A Acutohaemonlysin, phospholipase A2; YS49-phospholipase A2, snake
venom, toxin; 0.85A {Deinagkistrodon acutus} SCOP:
a.133.1.2 PDB: 1mg6_A 1pa0_A 3i03_A* 3hzd_A 3hzw_A*
3cxi_A* 3i3h_A 3i3i_A 1pc9_A 2q2j_A 3cyl_A* 1qll_A*
1xxs_A* 3qnl_A* 2ok9_A* 3iq3_A* 2h8i_A* 3mlm_A* 1y4l_A*
1clp_A* ...
Length = 122
Score = 76.6 bits (188), Expect = 1e-19
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 1 MVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYTGSNCPLFLEYFIPYV 59
M+ TG +P+ +Y YGC CG G G P+D DRCC +H CY Y
Sbjct: 8 MIWQETGKNPVKNYGLYGCNCGVGGRGEPLDATDRCCFVHKCCY--KKLTDCDSKKDRYS 65
Query: 60 WTCFRGRPLCQRGKSCSHRLCECDRRFSECLR 91
+ +C + + C +CECD+ F+ CLR
Sbjct: 66 YKWKNKAIVCGKNQPCMQEMCECDKAFAICLR 97
>1jia_A Phospholipase A2; agkistrodon haLys pallas; 2.13A {Gloydius
halys} SCOP: a.133.1.2 PDB: 1b4w_A 1c1j_A*
Length = 122
Score = 76.6 bits (188), Expect = 2e-19
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 1 MVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYTGSNCPLFLEYFIPYV 59
M+ TG +P+ SY YGCYCG G G P D DRCC +HD CY + Y
Sbjct: 8 MIKKMTGKEPVVSYAFYGCYCGSGGRGKPKDATDRCCFVHDCCYEKVTG--CDPKWDDYT 65
Query: 60 WTCFRGRPLCQRGKSCSHRLCECDRRFSECLR 91
++ G +C C +CECD+ + C R
Sbjct: 66 YSWKNGTIVCGGDDPCKKEVCECDKAAAICFR 97
>4e4c_A Phospholipase A2; hydrolase; HET: MES; 1.80A {Notechis scutatus
scutatus} PDB: 1ae7_A* 2not_A
Length = 119
Score = 75.7 bits (186), Expect = 2e-19
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Query: 1 MVSCSTGCD--PLSYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYTGSNCPLFLEYFIPY 58
++ C+ Y YGCYCG GSG PVD +DRCC++HD CY + Y
Sbjct: 8 LIQCANHGKRPTWHYMDYGCYCGAGGSGTPVDELDRCCKIHDDCYDEAGKKGCFPKMSAY 67
Query: 59 VWTCFRGRPLCQ-RGKSCSHRLCECDRRFSECLRPYS 94
+ C P C+ K C +C+CD + C
Sbjct: 68 DYYCGENGPYCRNIKKKCLRFVCDCDVEAAFCFAKAP 104
>2aoz_A Myotoxin II, phospholipase A2 homolog; X-RAY diffration,
myotoxicity, atropoides toxin; 2.08A {Atropoides
nummifer}
Length = 121
Score = 75.8 bits (186), Expect = 3e-19
Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 1 MVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYTGSNCPLFLEYFIPYV 59
M+ TG + SY YGC CG G P D DRCC +H CY Y
Sbjct: 8 MILQETGKNAAPSYGFYGCNCGVGSRGKPKDATDRCCFVHKCCY--KALTDCSPKTDSYS 65
Query: 60 WTCFRGRPLCQRGKSCSHRLCECDRRFSECLR 91
++ +C + C + CECD+ + CLR
Sbjct: 66 YSWKDKTIVCGKNNPCLKQECECDKAVAICLR 97
>1gmz_A Phospholipase A2; hydrolase, neurotoxic; 2.4A {Bothrops pirajai}
SCOP: a.133.1.2
Length = 122
Score = 75.5 bits (185), Expect = 3e-19
Identities = 33/97 (34%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
Query: 1 MVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYTGSNCPLFLEYFIPYV 59
M+ TG P Y YGCYCG G G P D DRCC +HD CY Y
Sbjct: 8 MILKETGKLPFPYYVTYGCYCGVGGRGGPKDATDRCCFVHDCCYG--KLTSCKPKTDRYS 65
Query: 60 WTCFRGRPLCQRGKSCSHRLCECDRRFSECLRPYSCP 96
++ G +C C +CECD+ + C R
Sbjct: 66 YSRKDGTIVCGENDPCRKEICECDKAAAVCFRENLDT 102
>3r0l_D Phospholipase A2 CB; crotoxin, presynaptic neurotoxin, snake venom,
phospholipase heterodimer interface, hydrolase; 1.35A
{Crotalus durissus terrificus} PDB: 2qog_B 2qog_A 1bjj_A
1a2a_A
Length = 122
Score = 75.5 bits (185), Expect = 4e-19
Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 1 MVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYTGSNCPLFLEYFIPYV 59
M+ T + + Y YGCYCG+ G G P D DRCC +HD CY + Y
Sbjct: 8 MIKFETRKNAVPFYAFYGCYCGWGGQGRPKDATDRCCFVHDCCY--GKLAKCNTKWDIYR 65
Query: 60 WTCFRGRPLCQRGKSCSHRLCECDRRFSECLRPYSCP 96
++ G C +G C ++CECDR +ECLR
Sbjct: 66 YSLKSGYITCGKGTWCEEQICECDRVAAECLRRSLST 102
>1zlb_A Hypotensive phospholipase A2; Asp49-PLA2, toxin, snake venom,
hydrolase; 0.97A {Bothrops jararacussu} SCOP: a.133.1.2
PDB: 1umv_X 1zl7_A 1z76_A* 1u73_A* 1vap_A 3r0l_A
Length = 122
Score = 75.5 bits (185), Expect = 4e-19
Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 1 MVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYTGSNCPLFLEYFIPYV 59
M++ G + Y YGCYCG G G P D DRCC +HD CY Y
Sbjct: 8 MINYVMGESGVLQYLSYGCYCGLGGQGQPTDATDRCCFVHDCCYGKVTG--CNPKIDSYT 65
Query: 60 WTCFRGRPLCQRGKSCSHRLCECDRRFSECLR 91
++ G +C C ++CECDR + C R
Sbjct: 66 YSKKNGDVVCGGDNPCKKQICECDRVATTCFR 97
>1m8r_A Phospholipase A2; phopholipase A2-metal cation complex, three
alpha, two beta, hydrolase; 1.90A {Gloydius halys}
SCOP: a.133.1.2 PDB: 1m8s_A 1bk9_A* 1psj_A 1ijl_A
1pp2_R
Length = 124
Score = 75.3 bits (185), Expect = 4e-19
Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 1 MVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYTGSNCPLFLEYFIPYV 59
++ + Y YGCYCG+ G G P D DRCC +HD CY Y
Sbjct: 8 LIMKVAKKSGMQWYSNYGCYCGWGGQGRPQDATDRCCFVHDCCYGKVTG--CDPKMDVYS 65
Query: 60 WTCFRGRPLCQRGKSCSHRLCECDRRFSECLR 91
++ G +C C +CECDR + C R
Sbjct: 66 FSEENGDIVCGGDDPCKKEICECDRAAAICFR 97
>1jlt_B Phospholipase A2, vipoxin; heterodimer complex, hydrolase,
PLA2-activity; 1.40A {Vipera ammodytes ammodytes} SCOP:
a.133.1.2 PDB: 1rgb_A* 2i0u_E* 1aok_B 1oqs_B
Length = 122
Score = 75.1 bits (184), Expect = 5e-19
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 1 MVSCSTGCDP-LSYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYTGSNCPLFLEYFIPYV 59
M++ G +Y YGCYCG+ G G P D DRCC +HD CY Y
Sbjct: 8 MINGKLGAFSVWNYISYGCYCGWGGQGTPKDATDRCCFVHDCCYGRVRG--CNPKLAIYS 65
Query: 60 WTCFRGRPLCQRGKSCSHRLCECDRRFSECLR 91
++ +G +C + C +CECDR + C
Sbjct: 66 YSFKKGNIVCGKNNGCLRDICECDRVAANCFH 97
>2qhd_A Phospholipase A2; beta sheet, three helices, protein-ligand
complex, hydrolase; HET: DAO; 1.95A {Echis carinatus}
PDB: 2qhe_A 3bjw_A*
Length = 122
Score = 75.1 bits (184), Expect = 6e-19
Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 1 MVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYTGSNCPLFLEYFIPYV 59
M+ TG P SY YGC+CG G P+D DRCC H CY P Y
Sbjct: 8 MIIQETGKSPFPSYTSYGCFCGGGERGPPLDATDRCCLAHSCCY--DTLPDCSPKTDRYK 65
Query: 60 WTCFRGRPLCQRGKSCSHRLCECDRRFSECLR 91
+ G +C+ SC R+CECD+ + CLR
Sbjct: 66 YKRENGEIICENSTSCKKRICECDKAVAVCLR 97
>1gp7_A Phospholipase A2; snake venom, KING cobra, cardiotoxic activity,
myotoxic activity, pancreatic loop, hydrolase, lipid
degradation, calcium; 2.6A {Ophiophagus hannah} SCOP:
a.133.1.2
Length = 151
Score = 74.3 bits (182), Expect = 2e-18
Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 1 MVSCSTG--CDPLSYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYT------GSNCPLFL 52
M+ C+ + Y YGCYCG GSG PVD +DRCC++HD CYT + +
Sbjct: 35 MIQCTVPGFLSWIKYADYGCYCGAGGSGTPVDKLDRCCQVHDNCYTQAQKLPACSSIMDS 94
Query: 53 EYFIPYVWTCFRGRPLCQ-RGKSCSHRLCECDRRFSECLRPYS 94
Y Y + C C+ C+ +C CDR + C
Sbjct: 95 PYVKIYSYDCSERTVTCKADNDECAAFICNCDRVAAHCFAASP 137
>2h4c_B Phospholipase A2-II; non-inhibitor acidic PLA2, basic PLA2,
heterodimer, hydrolase; 2.60A {Daboia russellii
siamensis}
Length = 122
Score = 73.5 bits (180), Expect = 2e-18
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 1 MVSCSTGCDP-LSYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYTGSNCPLFLEYFIPYV 59
++ Y YGCYCG+ G G P D DRCC +HD CY + Y
Sbjct: 8 LIDAKQEAFSFFKYISYGCYCGWGGQGTPKDATDRCCFVHDCCYARVKG--CNPKLVEYS 65
Query: 60 WTCFRGRPLCQRGKSCSHRLCECDRRFSECLR 91
++ G+ +C C +CECDR + C R
Sbjct: 66 YSYRTGKIVCGGDDPCLRAVCECDRVAAICFR 97
>1bun_A BETA2-bungarotoxin; hydrolase, presynaptic neurotoxin; 2.45A
{Bungarus multicinctus} SCOP: a.133.1.2
Length = 120
Score = 73.5 bits (180), Expect = 3e-18
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 1 MVSCSTGCD--PLSYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYTGSNCPLFL-EYFIP 57
M+ + C+ Y YGCYCG GSG P+D +DRCC +HD CY +
Sbjct: 8 MIRYTIPCEKTWGEYADYGCYCGAGGSGRPIDALDRCCYVHDNCYGDAEKKHKCNPKTQS 67
Query: 58 YVWTCFRGRPLCQ-RGKSCSHRLCECDRRFSECLR 91
Y + + +C +C+ +C+CDR + C
Sbjct: 68 YSYKLTKRTIICYGAAGTCARIVCDCDRTAALCFG 102
>1p7o_A Phospholipase A2, mipla4; pancreatic loop, HYDR; 2.30A {Micropechis
ikaheka} SCOP: a.133.1.2 PDB: 1pwo_A 1ozy_A
Length = 124
Score = 72.7 bits (178), Expect = 5e-18
Identities = 38/103 (36%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 1 MVSCS-TGCDPL-SYKGYGCYCGFLGSGYPVDPIDRCCELHDWCY------TGSNCPLFL 52
M+ C+ G +PL ++ YGCYCG GSG PVD +DRCC+ HD CY L
Sbjct: 8 MIKCTIPGREPLLAFSNYGCYCGKGGSGTPVDELDRCCQTHDNCYDKAEKLPECKGILSG 67
Query: 53 EYFIPYVWTCFRGRPLCQ-RGKSCSHRLCECDRRFSECLRPYS 94
YF Y + C G+ C + C +C CDR + C
Sbjct: 68 PYFNTYSYDCTDGKLTCNDQNDKCKLFICNCDRTAAMCFAKAP 110
>1g4i_A Phospholipase A2; lipid degradation, hydrolase; 0.97A {Bos taurus}
SCOP: a.133.1.2 PDB: 1bvm_A 1fdk_A* 1bp2_A 1mkt_A
1mkv_A* 1une_A 2bpp_A 4bp2_A 2bp2_A 1kvy_A 1bpq_A 2zp3_A
1ceh_A 3bp2_A 2zp5_A 1kvx_A 1kvw_A 2zp4_A 1irb_A 2bax_A*
...
Length = 123
Score = 71.2 bits (174), Expect = 2e-17
Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 1 MVSCSTGCDP--LSYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYT------GSNCPLFL 52
M+ C L + YGCYCG GSG PVD +DRCC+ HD CY +
Sbjct: 8 MIKCKIPSSEPLLDFNNYGCYCGLGGSGTPVDDLDRCCQTHDNCYKQAKKLDSCKVLVDN 67
Query: 53 EYFIPYVWTCFRGRPLCQ-RGKSCSHRLCECDRRFSECLRPYS 94
Y Y ++C C +C +C CDR + C
Sbjct: 68 PYTNNYSYSCSNNEITCSSENNACEAFICNCDRNAAICFSKVP 110
>1m8t_A Phospholipase A2; twinned crystal, alpha, beta, hydrolase; 2.10A
{Ophiophagus hannah} SCOP: a.133.1.2
Length = 119
Score = 68.1 bits (166), Expect = 3e-16
Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 1 MVSCSTG--CDPLSYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYT-GSNCPLFLEYFIP 57
M+ C+ Y YGCYCG GSG PVD +DRCC++HD CYT Y
Sbjct: 8 MIRCTIPGSIPWWDYSDYGCYCGSGGSGTPVDELDRCCQVHDNCYTQAQQLTECSPYSKR 67
Query: 58 YVWTCFRGRPLCQ-RGKSCSHRLCECDRRFSECLRPYSCPR 97
Y + C G C+ C+ +C+CDR + C +
Sbjct: 68 YSYDCSEGTLTCKADNDECAAFVCDCDRVAAICFAGAPYNK 108
>2wg7_A PLA2, putative phospholipase A2; hydrolase, secretory PLA2; 2.00A
{Oryza sativa} PDB: 2wg9_A* 2wg8_B 2wg8_A
Length = 130
Score = 34.5 bits (78), Expect = 0.002
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 5 STGCDPLSYKGYGCYCGFLGSG----YPVDPIDRCCELHDWCYTGSN 47
S C YG YCG L SG P D +D CC +HD C N
Sbjct: 25 SQFCTIAPLLRYGKYCGILYSGCPGERPCDALDACCMVHDHCVDTHN 71
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 0.47
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 28/98 (28%)
Query: 2 VSCSTGCD----PLSYKGYGCYCGFLGSGYPV-------------DPIDRCCELHDWCYT 44
+G D P S + FL PV D I++ ++ +
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFL----PVASPFHSHLLVPASDLINKDLVKNNVSFN 451
Query: 45 GSNCPLFLEYFIPYVWTCFRGRPLCQRGKSCSHRLCEC 82
+ ++ IP V+ F G L S S R+ +C
Sbjct: 452 AKD----IQ--IP-VYDTFDGSDLRVLSGSISERIVDC 482
Score = 26.9 bits (59), Expect = 2.1
Identities = 18/115 (15%), Positives = 27/115 (23%), Gaps = 51/115 (44%)
Query: 22 FLGSGYPVDPIDRCCELHDWCYTGSNCPLFLEYFIPYVWTCFRGRPLCQRG----KSCSH 77
F G G D + EL D L+ Y V L +
Sbjct: 160 FGGQGNTDDYFE---ELRD---------LYQTYH-VLV------GDLIKFSAETLSELIR 200
Query: 78 RLCECDRRFSECLR--------------------PYSCP--------RYKAVCRS 104
+ ++ F++ L P SCP Y +
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKL 255
>1urj_A Major DNA-binding protein; SSB, ICP8, HSV-1, DNA replication,
zinc-finger, nuclear protein.; 3.0A {Human herpesvirus
1} SCOP: e.58.1.1
Length = 1136
Score = 27.0 bits (59), Expect = 1.6
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 71 RGKSCSHRLCECDRRFSECLRPYS---CPRYKAVCRSNVFRLMQNLILI 116
R L E + S L PY+ CP + + R + + Q+L L
Sbjct: 639 RNFKFRDGLGEANHAMSLTLDPYACGPCPLLQLLGRRSNLAVYQDLALS 687
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription
factor, transcription initiation; 2.60A {Saccharomyces
cerevisiae} SCOP: c.66.1.24
Length = 353
Score = 26.4 bits (58), Expect = 2.6
Identities = 3/42 (7%), Positives = 10/42 (23%), Gaps = 5/42 (11%)
Query: 59 VWTCFRGRPLCQRGKSCSHRLCECDRRFSECLRP-YSCPRYK 99
+ + + + L E + L + +
Sbjct: 71 IQS----AIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQ 108
>3ng9_A Capsid protein; beta barrel, single-stranded DNA V parvovirus,
icosahedral virus; HET: ADE; 2.50A {Adeno-associated
virus - 1} PDB: 3kic_A* 3kie_A* 3oah_A* 1vu0_U 1vu1_o
3tsx_A 3shm_A 1lp3_A 2qa0_A 3ra2_A 3ra4_A* 3ra8_A*
3ra9_A* 3raa_A* 3ux1_A
Length = 736
Score = 26.4 bits (57), Expect = 2.7
Identities = 10/28 (35%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 19 YCG---FLGSGYPVDPIDRCCELHDWCY 43
Y G L G PV+ D HD Y
Sbjct: 52 YLGPFNGLDKGEPVNAADAAALEHDKAY 79
>3ntt_A Capsid protein; gene therapy vector, cystic fibros sialic acid
receptor, icosahedral virus; 3.45A {Adeno-associated
virus - 5}
Length = 724
Score = 26.0 bits (56), Expect = 3.4
Identities = 10/28 (35%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 19 YCG---FLGSGYPVDPIDRCCELHDWCY 43
Y G L G PV+ D HD Y
Sbjct: 51 YLGPGNGLDRGEPVNRADEVAREHDISY 78
>3r0l_B Crotoxin chain B; crotoxin, presynaptic neurotoxin, snake venom,
phospholipase heterodimer interface, hydrolase; 1.35A
{Crotalus durissus terrificus}
Length = 35
Score = 23.1 bits (49), Expect = 7.2
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 65 GRPLCQRGKSCSHRLCECDRRFSECLR 91
G +C C ++CECD+ + C R
Sbjct: 4 GEIVCGEDDPCGTQICECDKAAAICFR 30
>1kop_A Carbonic anhydrase; lyase, structural trimming; 1.90A {Neisseria
gonorrhoeae} SCOP: b.74.1.1 PDB: 1koq_A
Length = 223
Score = 24.6 bits (54), Expect = 7.6
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 9/37 (24%)
Query: 39 HDWCYTGSNCPLFLEYFIPYVW-TCFRGRPLCQRGKS 74
W YTG + P W LC GK+
Sbjct: 2 THWGYTGHDSPES--------WGNLSEEFRLCSTGKN 30
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco
hydrolase, lysosome, protease, thiol protease, zymogen,
CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A*
3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A*
1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A*
1qdq_A* 1csb_B* 1huc_B 2ipp_B ...
Length = 266
Score = 24.6 bits (54), Expect = 10.0
Identities = 9/45 (20%), Positives = 12/45 (26%), Gaps = 2/45 (4%)
Query: 5 STGCDPLSYKGYGCYCGFLGSGYPVDPIDRCCELHDWCYTGSNCP 49
GC P Y C G+ P + C G +
Sbjct: 103 HVGCRP--YSIPPCEAHVNGARPPCTGEGDTPKCSKICEPGYSPT 145
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.332 0.148 0.559
Gapped
Lambda K H
0.267 0.0584 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,879,574
Number of extensions: 104013
Number of successful extensions: 448
Number of sequences better than 10.0: 1
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 126
Length of query: 116
Length of database: 6,701,793
Length adjustment: 79
Effective length of query: 37
Effective length of database: 4,496,034
Effective search space: 166353258
Effective search space used: 166353258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (23.7 bits)