Query psy12202
Match_columns 157
No_of_seqs 123 out of 740
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 21:27:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12202.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12202hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00125 PLA2c PLA2c: Phospholi 100.0 8E-40 1.7E-44 247.6 6.2 106 6-140 1-107 (115)
2 cd04707 otoconin_90 otoconin_9 100.0 3.8E-38 8.2E-43 239.4 6.5 103 9-141 1-105 (117)
3 KOG4087|consensus 100.0 5.8E-37 1.3E-41 239.0 7.3 109 4-141 19-129 (144)
4 PF00068 Phospholip_A2_1: Phos 100.0 2.1E-35 4.6E-40 222.4 4.9 109 6-144 1-111 (116)
5 smart00085 PA2c Phospholipase 100.0 7.6E-35 1.6E-39 220.3 7.4 106 6-140 1-108 (117)
6 cd00618 PLA2_like PLA2_like: P 99.9 2.6E-22 5.7E-27 141.1 5.5 78 26-134 1-83 (83)
7 cd04706 PLA2_plant PLA2_plant: 99.2 4.5E-12 9.7E-17 96.8 0.3 35 23-62 19-57 (117)
8 cd04704 PLA2_bee_venom_like PL 98.5 3.7E-08 8E-13 72.8 1.4 62 31-135 8-75 (97)
9 PF05826 Phospholip_A2_2: Phos 96.9 0.00015 3.2E-09 53.7 -1.1 19 117-135 56-74 (99)
10 PF08398 Parvo_coat_N: Parvovi 96.6 0.0011 2.4E-08 46.0 1.4 39 31-74 6-47 (64)
11 cd04705 PLA2_group_III_like PL 94.0 0.023 4.9E-07 42.6 0.9 21 117-137 64-84 (100)
12 PF06951 PLA2G12: Group XII se 28.6 36 0.00077 28.1 1.6 21 38-63 88-112 (184)
13 PF14703 DUF4463: Domain of un 28.3 18 0.00038 24.7 -0.2 20 30-50 61-80 (85)
No 1
>cd00125 PLA2c PLA2c: Phospholipase A2, a family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids (PC or phosphatidylethanolamine), usually in a metal-dependent reaction, to generate lysophospholipid (LysoPL) and a free fatty acid (FA). The resulting products are either dietary or used in synthetic pathways for leukotrienes and prostaglandins. Often, arachidonic acid is released as a free fatty acid and acts as second messenger in signaling networks. Secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis (LysoPL and FA) cannot form bilayers leading to a change in membrane conformation and ultimately to a block in
Probab=100.00 E-value=8e-40 Score=247.63 Aligned_cols=106 Identities=37% Similarity=0.660 Sum_probs=98.0
Q ss_pred cHHHHHHHHhhhcCCCcccccCCccccCCCCCCCCcCccCCccccccccchhhHHhhhhhcccCCc-ceeeEEeecCCcc
Q psy12202 6 SAVQLYSMVSCSTGCDPLSYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYIIFIYSGV-VSYTTGAIQGPTV 84 (157)
Q Consensus 6 ~l~qf~~Mi~c~tg~~~l~Y~~YGCyCg~gG~G~PVD~iDrcC~~~~~~~Hd~CY~~~~~~~c~~~-~~Y~~~~~~~~~~ 84 (157)
+|+||++||+|+||++|++|++||||||+||+|+|||+|||||+. ||.||+.+....|.|+ .+|+|++.++
T Consensus 1 ~l~qf~~MI~c~tgr~~~~Y~~YGCyCG~GG~G~PvD~~DrCC~~-----HD~CY~~~~~~~C~p~~~~Y~y~~~~~--- 72 (115)
T cd00125 1 NLLQFGKMIKCTTGRSALDYNGYGCYCGLGGSGTPVDDTDRCCQV-----HDCCYDRAEKGGCSPYFTSYSYTCSDG--- 72 (115)
T ss_pred CHHHHHHHHHHhcCCCHHHHhhcCCccCCCCCCCCcccHHHHHHH-----HHhHHhccccCCCccccccceEEEECC---
Confidence 589999999999999999999999999999999999999999999 9999999976778887 9999999877
Q ss_pred cccCCCCCceeCCCCCCCCceeeccCCCCChhhhhhchhhHHHHHHhccCCCCCCc
Q psy12202 85 LSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECDRRFSECLRPYSCPKYK 140 (157)
Q Consensus 85 ~s~~~~~~i~C~~~~~~~~~~~~~~~~~~~~C~~~lCeCDr~~A~C~~~~~~~~~~ 140 (157)
.|+|. +..++|+++||||||++|+||++++|+.+.
T Consensus 73 -------~i~C~--------------~~~~~C~~~~CeCDr~aa~Cf~~~~yn~~~ 107 (115)
T cd00125 73 -------QITCS--------------DANDKCARALCECDRAAALCFARAPYNPKY 107 (115)
T ss_pred -------cceEC--------------cCCChHhHHHhHccHHHHHHHhhCcCChhh
Confidence 89994 456899999999999999999999987653
No 2
>cd04707 otoconin_90 otoconin_90: Phospholipase A2-like domains present in otoconin-90 and otoconin-95, mammal proteins that are principal matrix proteins of calcitic otoconia. Interactions involving otoconin-90 may trigger or constitute key events in otoconia formation. The PLA2-like domains in otoconins may have lost their metal-binding sites.
Probab=100.00 E-value=3.8e-38 Score=239.39 Aligned_cols=103 Identities=31% Similarity=0.574 Sum_probs=92.9
Q ss_pred HHHHHHhhhcCCCcccccCCccccCCCCCCCCcCccCCccccccccchhhHHhhhhhcccCC--cceeeEEeecCCcccc
Q psy12202 9 QLYSMVSCSTGCDPLSYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYIIFIYSG--VVSYTTGAIQGPTVLS 86 (157)
Q Consensus 9 qf~~Mi~c~tg~~~l~Y~~YGCyCg~gG~G~PVD~iDrcC~~~~~~~Hd~CY~~~~~~~c~~--~~~Y~~~~~~~~~~~s 86 (157)
||+.||+|+||+++++|++||||||+||+|+|||+|||||+. ||.||+.++...|.+ +..|+|++.++
T Consensus 1 qf~~MI~c~tgr~~~~Y~~YGCyCG~GG~G~PvD~~DrCC~~-----HD~CY~~~~~~~C~~~~~~~Y~y~c~~~----- 70 (117)
T cd04707 1 QLGEMLKCLTGRCPREFEDYGCYCGQEGEGLPVDELDRCCFQ-----HRCCLEQASEMGCLQDRKLSTEVTCVDH----- 70 (117)
T ss_pred CHHHHHhhhcCCCHHHHcccCCcccCCCCCCCcccchhHHHH-----hHHHHhhhhhcCCCCCCCcceEEEEECC-----
Confidence 799999999999999999999999999999999999999999 999999998666743 47899999877
Q ss_pred cCCCCCceeCCCCCCCCceeeccCCCCChhhhhhchhhHHHHHHhccCCCCCCcc
Q psy12202 87 FSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECDRRFSECLRPYSCPKYKA 141 (157)
Q Consensus 87 ~~~~~~i~C~~~~~~~~~~~~~~~~~~~~C~~~lCeCDr~~A~C~~~~~~~~~~~ 141 (157)
.|+| +..++|+++||||||++|+||++++|+.+..
T Consensus 71 -----~i~C---------------~~~~~C~~~vCeCDk~aa~Cf~~~~Yn~~~~ 105 (117)
T cd04707 71 -----KPKC---------------EGVSVCEKLLCTCDKTAAECMAAAHFNSSLN 105 (117)
T ss_pred -----cccc---------------CCCChHHHHHhhccHHHHHHhccCCCCHhhc
Confidence 8999 3457899999999999999999999887544
No 3
>KOG4087|consensus
Probab=100.00 E-value=5.8e-37 Score=238.97 Aligned_cols=109 Identities=35% Similarity=0.631 Sum_probs=101.3
Q ss_pred CccHHHHHHHHhhhcCCC-cccccCCccccCCCCCCCCcCccCCccccccccchhhHHhhhhhcccCCc-ceeeEEeecC
Q psy12202 4 KRSAVQLYSMVSCSTGCD-PLSYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYIIFIYSGV-VSYTTGAIQG 81 (157)
Q Consensus 4 ~R~l~qf~~Mi~c~tg~~-~l~Y~~YGCyCg~gG~G~PVD~iDrcC~~~~~~~Hd~CY~~~~~~~c~~~-~~Y~~~~~~~ 81 (157)
.++|+||.+||+++|+.+ ++.|++||||||+||+|+|+|+|||||+. ||.||+.+....|+++ ..|+|++.++
T Consensus 19 ~g~l~~l~~Mi~~vt~~~~~l~Y~~YGCyCGlGG~G~P~D~iDwCC~~-----HDcCY~~le~~gC~py~~~Ys~sc~n~ 93 (144)
T KOG4087|consen 19 HGALLNLKKMIECVTGKSAALSYNKYGCYCGLGGSGQPKDAIDWCCHA-----HDCCYDRLEEKGCSPYTERYSWSCSNQ 93 (144)
T ss_pred chHHHHHHHHHHHHcCCCccceecCccccccCCCCCCccchHHHHHhc-----ccHHHHHHHHcCCCccccceeeEeeCC
Confidence 458999999999999998 67999999999999999999999999999 9999999998889998 8999999988
Q ss_pred CcccccCCCCCceeCCCCCCCCceeeccCCCCChhhhhhchhhHHHHHHhccCCCCCCcc
Q psy12202 82 PTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECDRRFSECLRPYSCPKYKA 141 (157)
Q Consensus 82 ~~~~s~~~~~~i~C~~~~~~~~~~~~~~~~~~~~C~~~lCeCDr~~A~C~~~~~~~~~~~ 141 (157)
.|+|+ +.+.+|+.+||||||++|+||++.+||++..
T Consensus 94 ----------~I~Cs--------------~~~~~C~~~lC~CDk~~a~C~~r~~yn~ky~ 129 (144)
T KOG4087|consen 94 ----------SITCS--------------DKNTECEAQLCECDKKAAECLKRTTYNKKYK 129 (144)
T ss_pred ----------eEEeC--------------CCccHHHHHHhhhhhHHHHHHhcCccchhhc
Confidence 99994 5578999999999999999999999988654
No 4
>PF00068 Phospholip_A2_1: Phospholipase A2; InterPro: IPR001211 Phospholipase A2 (3.1.1.4 from EC) (PLA2) is a small lipolytic enzyme that releases fatty acids from the second carbon group of glycerol. It is involved in a number of physiologically important cellular processes, such as the liberation of arachidonic acid from membrane phospholipids []. It plays a pivotal role in the biosynthesis of prostaglandin and other mediators of inflammation. PLA2 has four to seven disulphide bonds and binds a calcium ion that is essential for activity. Within the active enzyme, the alpha amino group is involved in a conserved hydrogen-bonding network linking the N-terminal region to the active site. The side chains of two conserved residues, His and Asp, participate in the catalytic network. Many PLA2's are widely distributed in snakes, lizards, bees and mammals. In mammals there are at least four forms: pancreatic, membrane-associated as well as two less well characterised forms. The venom of most snakes contains multiple forms of PLA2. Some of them are presynaptic neurotoxins which inhibit neuromuscular transmission by blocking acetylcholine release from the nerve termini. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 1.; GO: 0004623 phospholipase A2 activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1OQS_F 1S6B_B 1XXW_B 1MH2_B 2RD4_B 1OZ6_A 2OSN_A 2PH4_B 1FDK_A 2BP2_A ....
Probab=100.00 E-value=2.1e-35 Score=222.40 Aligned_cols=109 Identities=38% Similarity=0.652 Sum_probs=95.5
Q ss_pred cHHHHHHHHhhhcCCCc-ccccCCccccCCCCCCCCcCccCCccccccccchhhHHhhhhhcccCCc-ceeeEEeecCCc
Q psy12202 6 SAVQLYSMVSCSTGCDP-LSYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYIIFIYSGV-VSYTTGAIQGPT 83 (157)
Q Consensus 6 ~l~qf~~Mi~c~tg~~~-l~Y~~YGCyCg~gG~G~PVD~iDrcC~~~~~~~Hd~CY~~~~~~~c~~~-~~Y~~~~~~~~~ 83 (157)
+|+||..||+++++..+ ++|++||||||++|+|.|||+||++|+. |++||+++....|.+. .+|+|.+..+
T Consensus 1 ~l~q~~~Mi~~~~~~~~~~~y~~YGCyCg~~g~G~PvD~iD~~C~~-----h~~Cy~~~~~~~C~~~~~~Y~~~~~~~-- 73 (116)
T PF00068_consen 1 NLWQFGEMIKCVTGKFPFFKYNDYGCYCGFGGKGQPVDEIDRCCRK-----HDQCYKCAKEKGCDPYFTSYSYSCSNK-- 73 (116)
T ss_dssp -HHHHHHHHHHHHSSSHHHHHSSBTTTBSSSSSSS-SSHHHHHHHH-----HHHHHHHHTTTTSSTTTSS-EEEEETT--
T ss_pred CHHHHHHHHHHhhCCCcHHHHccccccCCCCCCCCCcccccchhHH-----hHHHHHHHhcccccccccceEEEEecC--
Confidence 58999999999999875 5999999999999999999999999999 9999999988788776 8999999877
Q ss_pred ccccCCCCCceeCCCCCCCCceeeccCCCCChhhhhhchhhHHHHHHhccCCCCCCccccc
Q psy12202 84 VLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECDRRFSECLRPYSCPKYKAVCR 144 (157)
Q Consensus 84 ~~s~~~~~~i~C~~~~~~~~~~~~~~~~~~~~C~~~lCeCDr~~A~C~~~~~~~~~~~~c~ 144 (157)
.|+|. + +++|+++|||||++||+||++++|+.......
T Consensus 74 --------~i~C~--------------~-~~~C~~~lCeCD~~~A~cl~~~~yn~~~~~~~ 111 (116)
T PF00068_consen 74 --------NITCS--------------D-NDSCERALCECDKAFAECLARNSYNKKYKNFD 111 (116)
T ss_dssp --------EEEEE--------------S-SSHHHHHHHHHHHHHHHHHHHTGB-GGGBTTT
T ss_pred --------CcccC--------------C-CCchhHHhhhCcHHHHHHHHhCccCHHHhCCC
Confidence 89993 4 89999999999999999999999888765443
No 5
>smart00085 PA2c Phospholipase A2.
Probab=100.00 E-value=7.6e-35 Score=220.34 Aligned_cols=106 Identities=35% Similarity=0.606 Sum_probs=95.9
Q ss_pred cHHHHHHHHhhhcCCCc-ccccCCccccCCCCCCCCcCccCCccccccccchhhHHhhhhhcccCCc-ceeeEEeecCCc
Q psy12202 6 SAVQLYSMVSCSTGCDP-LSYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYIIFIYSGV-VSYTTGAIQGPT 83 (157)
Q Consensus 6 ~l~qf~~Mi~c~tg~~~-l~Y~~YGCyCg~gG~G~PVD~iDrcC~~~~~~~Hd~CY~~~~~~~c~~~-~~Y~~~~~~~~~ 83 (157)
+|+||+.||+|+||++| ++|.+||||||+||+|.|||+||+||++ ||.||+.+....|.++ ..|+|++.++
T Consensus 1 ~l~qf~~mi~c~t~~~~~~~y~~YGCyCG~gg~G~pvD~~D~CC~~-----HD~Cy~~~~~~~C~~~~~~y~~~c~~~-- 73 (117)
T smart00085 1 NLWQFGNMIQCATGKRAWLSYGDYGCYCGWGGSGTPVDATDRCCFV-----HDCCYGKAEKEGCNPKTTTYSYSCDNG-- 73 (117)
T ss_pred CHHHHHHHHHHhcCCCcccchhccCcccCCCCCCCccccccchhhh-----cCchhhhcccCCCcccccceEEEEECC--
Confidence 58999999999999665 6999999999999999999999999999 9999999976677776 9999999877
Q ss_pred ccccCCCCCceeCCCCCCCCceeeccCCCCChhhhhhchhhHHHHHHhccCCCCCCc
Q psy12202 84 VLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECDRRFSECLRPYSCPKYK 140 (157)
Q Consensus 84 ~~s~~~~~~i~C~~~~~~~~~~~~~~~~~~~~C~~~lCeCDr~~A~C~~~~~~~~~~ 140 (157)
.|+|. ..+++|++.+|||||.+|+||++++|+.++
T Consensus 74 --------~~~C~--------------~~~~~C~~~~C~CD~~aa~Cf~~~~yn~~~ 108 (117)
T smart00085 74 --------FITCG--------------GKNTACLVFVCECDRAAAICFAKNPYNKKN 108 (117)
T ss_pred --------cceEC--------------cCCCccceeecccCHHHHHHhhhCccChhc
Confidence 89994 336799999999999999999999988764
No 6
>cd00618 PLA2_like PLA2_like: Phospholipase A2, a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids (PC or phosphatidylethanolamine), usually in a metal-dependent reaction, to generate lysophospholipid (LysoPL) and a free fatty acid (FA). The resulting products are either dietary or used in synthetic pathways for leukotrienes and prostaglandins. Often, arachidonic acid is released as a free fatty acid and acts as second messenger in signaling networks. Secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis (LysoPL and FA) cannot form bilayers leading to a change in membrane conformation and ultimately
Probab=99.86 E-value=2.6e-22 Score=141.10 Aligned_cols=78 Identities=37% Similarity=0.654 Sum_probs=63.9
Q ss_pred cCCccccCCCCC----CCCcCccCCccccccccchhhHHhhhhhcccCCc-ceeeEEeecCCcccccCCCCCceeCCCCC
Q psy12202 26 KGYGCYCGFLGS----GYPVDPIDRTSQLNMARDHDSGHEIYIIFIYSGV-VSYTTGAIQGPTVLSFSNISSPTCGPASE 100 (157)
Q Consensus 26 ~~YGCyCg~gG~----G~PVD~iDrcC~~~~~~~Hd~CY~~~~~~~c~~~-~~Y~~~~~~~~~~~s~~~~~~i~C~~~~~ 100 (157)
++||||||+||+ |.|||+||+||+. ||.||+.+........ ..|.| ... .++|.
T Consensus 1 ~~ygc~CG~g~~~~~~g~p~D~~D~CC~~-----HD~Cy~~~~~~~~~~~~~~~~~--~~~----------~~~~~---- 59 (83)
T cd00618 1 LPYGCYCGPGGSACPSGQPVDETDRCCRK-----HDCCYDQISDGGCCDGCLSYSF--SEG----------GVTCL---- 59 (83)
T ss_pred CCcCcccCCCCcCCCCCCCCCcchhhhhh-----CccHhhhhhccCCCCCcceeee--cCC----------ceeEC----
Confidence 479999999999 9999999999999 9999999975433332 55666 222 67773
Q ss_pred CCCceeeccCCCCChhhhhhchhhHHHHHHhccC
Q psy12202 101 DGPYVVSKASKRGKSCSHRLCECDRRFSECLRPY 134 (157)
Q Consensus 101 ~~~~~~~~~~~~~~~C~~~lCeCDr~~A~C~~~~ 134 (157)
.+.++|.+.+|+||++||+||+++
T Consensus 60 ----------~~~~~c~~~~C~CD~~~a~Cl~~~ 83 (83)
T cd00618 60 ----------TNSDLCTRSHCDCDRRLAICLARA 83 (83)
T ss_pred ----------CCCChhhHhhCcccHHHHHHhhhC
Confidence 567899999999999999999874
No 7
>cd04706 PLA2_plant PLA2_plant: Plant-specific sub-family of Phospholipase A2, a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. Enzymatically active PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids; secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis cannot form bilayers leading to a change in membrane conformation and ultimately to a block in the release of neurotransmitters. PLA2 may form dimers or oligomers. This sub-family does not appear to have a conserved active site and metal-binding loop.
Probab=99.17 E-value=4.5e-12 Score=96.81 Aligned_cols=35 Identities=34% Similarity=0.543 Sum_probs=32.4
Q ss_pred ccccCCccccCCCCCC----CCcCccCCccccccccchhhHHhh
Q psy12202 23 LSYKGYGCYCGFLGSG----YPVDPIDRTSQLNMARDHDSGHEI 62 (157)
Q Consensus 23 l~Y~~YGCyCg~gG~G----~PVD~iDrcC~~~~~~~Hd~CY~~ 62 (157)
+.|..||||||+||+| .|||+||+||+. ||.||+.
T Consensus 19 ~~y~~YG~yCG~g~~g~~~~~P~D~lD~CC~~-----HD~Cy~~ 57 (117)
T cd04706 19 PPFLRYGKYCGPGYSGCPGERPCDDLDACCMT-----HDACVQA 57 (117)
T ss_pred CcccccCcccCCCCCCCCCCCCcchhhHHHHh-----CcCcccC
Confidence 3599999999999998 899999999999 9999964
No 8
>cd04704 PLA2_bee_venom_like PLA2_bee_venom_like: A sub-family of Phospholipase A2, similar to bee venom PLA2. PLA2 is a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. Enzymatically active PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids; secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis cannot form bilayers leading to a change in membrane conformation and ultimately to a block in the release of neurotransmitters. PLA2 may form dimers or oligomers. Bee venom PLA2 has fewer conserved disulfide bridges than most canonical PLA2s.
Probab=98.51 E-value=3.7e-08 Score=72.84 Aligned_cols=62 Identities=24% Similarity=0.478 Sum_probs=46.3
Q ss_pred ccCCCCCCC-Cc-----CccCCccccccccchhhHHhhhhhcccCCcceeeEEeecCCcccccCCCCCceeCCCCCCCCc
Q psy12202 31 YCGFLGSGY-PV-----DPIDRTSQLNMARDHDSGHEIYIIFIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPY 104 (157)
Q Consensus 31 yCg~gG~G~-PV-----D~iDrcC~~~~~~~Hd~CY~~~~~~~c~~~~~Y~~~~~~~~~~~s~~~~~~i~C~~~~~~~~~ 104 (157)
|||.|.... +. .++|+||+. ||.|+..+.-. .|+|+.
T Consensus 8 WCG~Gn~a~~~~dlG~~~~tD~CCr~-----HD~C~~~i~~~------~~kyg~-------------------------- 50 (97)
T cd04704 8 WCGPGNIATNYSDLGAFRETDKCCRE-----HDHCPDIISAG------EYKYGL-------------------------- 50 (97)
T ss_pred ecCCCCCCCCcccccCccccchHHHc-----cccCcCccccc------ccccCc--------------------------
Confidence 899987664 44 689999999 99999776421 223321
Q ss_pred eeeccCCCCChhhhhhchhhHHHHHHhccCC
Q psy12202 105 VVSKASKRGKSCSHRLCECDRRFSECLRPYS 135 (157)
Q Consensus 105 ~~~~~~~~~~~C~~~lCeCDr~~A~C~~~~~ 135 (157)
.+...+.+..|+||++|+.||.+..
T Consensus 51 ------~N~~~~t~~~C~CD~~f~~CL~~~~ 75 (97)
T cd04704 51 ------TNTRLFTRSHCDCDNRFRQCLKNVN 75 (97)
T ss_pred ------cCCCccccccCcHHHHHHHHHHHcC
Confidence 2335678899999999999999865
No 9
>PF05826 Phospholip_A2_2: Phospholipase A2; InterPro: IPR001211 Phospholipase A2 (3.1.1.4 from EC) (PLA2) is a small lipolytic enzyme that releases fatty acids from the second carbon group of glycerol. It is involved in a number of physiologically important cellular processes, such as the liberation of arachidonic acid from membrane phospholipids []. It plays a pivotal role in the biosynthesis of prostaglandin and other mediators of inflammation. PLA2 has four to seven disulphide bonds and binds a calcium ion that is essential for activity. Within the active enzyme, the alpha amino group is involved in a conserved hydrogen-bonding network linking the N-terminal region to the active site. The side chains of two conserved residues, His and Asp, participate in the catalytic network. Many PLA2's are widely distributed in snakes, lizards, bees and mammals. In mammals there are at least four forms: pancreatic, membrane-associated as well as two less well characterised forms. The venom of most snakes contains multiple forms of PLA2. Some of them are presynaptic neurotoxins which inhibit neuromuscular transmission by blocking acetylcholine release from the nerve termini. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 1.; GO: 0004623 phospholipase A2 activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1POC_A.
Probab=96.88 E-value=0.00015 Score=53.69 Aligned_cols=19 Identities=37% Similarity=0.982 Sum_probs=15.0
Q ss_pred hhhhchhhHHHHHHhccCC
Q psy12202 117 SHRLCECDRRFSECLRPYS 135 (157)
Q Consensus 117 ~~~lCeCDr~~A~C~~~~~ 135 (157)
-..-|+||++|..||++..
T Consensus 56 T~~hC~Cd~~f~~CL~~~~ 74 (99)
T PF05826_consen 56 TISHCDCDSRFYQCLKNVN 74 (99)
T ss_dssp -EEBHHHHHHHHHHHHTS-
T ss_pred ceeecCcccHHHHHHHHcC
Confidence 4567999999999999843
No 10
>PF08398 Parvo_coat_N: Parvovirus coat protein VP1; InterPro: IPR013607 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This is the N-terminal region of the Parvovirus VP1 coat protein []; its function is not known. ; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=96.55 E-value=0.0011 Score=46.05 Aligned_cols=39 Identities=23% Similarity=0.389 Sum_probs=31.4
Q ss_pred ccCCC---CCCCCcCccCCccccccccchhhHHhhhhhcccCCccee
Q psy12202 31 YCGFL---GSGYPVDPIDRTSQLNMARDHDSGHEIYIIFIYSGVVSY 74 (157)
Q Consensus 31 yCg~g---G~G~PVD~iDrcC~~~~~~~Hd~CY~~~~~~~c~~~~~Y 74 (157)
|+|+| -.|.||+++|..++. ||..|+.+......||..|
T Consensus 6 YlGPgn~l~~g~Pv~~~D~aA~~-----HD~aY~~~lk~G~NPY~~~ 47 (64)
T PF08398_consen 6 YLGPGNPLDNGEPVNPVDAAARE-----HDEAYDELLKHGDNPYLHF 47 (64)
T ss_pred ccCCCCCcCCCCCCCHHHHHHHH-----HHHHHHHHHHcCCCCceec
Confidence 56766 469999999999999 9999999986666665433
No 11
>cd04705 PLA2_group_III_like PLA2_group_III_like: A sub-family of Phospholipase A2, similar to human group III PLA2. PLA2 is a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. Enzymatically active PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids; secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis cannot form bilayers leading to a change in membrane conformation and ultimately to a block in the release of neurotransmitters. PLA2 may form dimers or oligomers.
Probab=94.01 E-value=0.023 Score=42.58 Aligned_cols=21 Identities=43% Similarity=0.896 Sum_probs=16.9
Q ss_pred hhhhchhhHHHHHHhccCCCC
Q psy12202 117 SHRLCECDRRFSECLRPYSCP 137 (157)
Q Consensus 117 ~~~lCeCDr~~A~C~~~~~~~ 137 (157)
...-|+||++|..||....-+
T Consensus 64 tisHCdCD~rf~~CL~~~n~~ 84 (100)
T cd04705 64 SVSHCDCDSRLKDCLRLSSSS 84 (100)
T ss_pred ccccccHHHHHHHHHHHcCCc
Confidence 345699999999999987543
No 12
>PF06951 PLA2G12: Group XII secretory phospholipase A2 precursor (PLA2G12); InterPro: IPR010711 This family consists of several group XII secretory phospholipase A2 precursor (PLA2G12) (3.1.1.4 from EC) proteins. Group XII and group V PLA(2)s are thought to participate in helper T cell immune response through release of immediate second signals and generation of downstream eicosanoids [].; GO: 0004623 phospholipase A2 activity, 0005509 calcium ion binding, 0016042 lipid catabolic process, 0005576 extracellular region
Probab=28.57 E-value=36 Score=28.12 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=16.0
Q ss_pred CCCcC----ccCCccccccccchhhHHhhh
Q psy12202 38 GYPVD----PIDRTSQLNMARDHDSGHEIY 63 (157)
Q Consensus 38 G~PVD----~iDrcC~~~~~~~Hd~CY~~~ 63 (157)
|.++| +.=.||-. ||.||+.=
T Consensus 88 G~~~d~~iP~~t~CCn~-----HDiCYdTC 112 (184)
T PF06951_consen 88 GLQIDIGIPAMTKCCNQ-----HDICYDTC 112 (184)
T ss_pred CCcccCCCCchhccchh-----hhhHHHcc
Confidence 44555 37799999 99999864
No 13
>PF14703 DUF4463: Domain of unknown function (DUF4463)
Probab=28.28 E-value=18 Score=24.69 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=16.0
Q ss_pred cccCCCCCCCCcCccCCcccc
Q psy12202 30 CYCGFLGSGYPVDPIDRTSQL 50 (157)
Q Consensus 30 CyCg~gG~G~PVD~iDrcC~~ 50 (157)
.++|+-| |.-||+||.+...
T Consensus 61 ~~~~~~g-~~kVDaIdyy~~e 80 (85)
T PF14703_consen 61 GFLGLFG-GKKVDAIDYYREE 80 (85)
T ss_pred CcCCCCC-CCcchHHHHHHHH
Confidence 4667777 8999999987665
Done!