RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12202
(157 letters)
>1g0z_A Phospholipase A2; toxin; 2.18A {Bungarus caeruleus} SCOP: a.133.1.2
PDB: 1u4j_A* 1g2x_A 2osn_A 1dpy_A 1fe5_A 1tc8_A* 1po8_A*
Length = 118
Score = 61.9 bits (150), Expect = 2e-13
Identities = 34/128 (26%), Positives = 49/128 (38%), Gaps = 29/128 (22%)
Query: 6 SAVQLYSMVSCSTGCDPLSYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYII 65
+ Q +M+ C+ SY GYGCYCG+ GSG PVD +DR HD +
Sbjct: 1 NLKQFKNMIQCAGTRTWTSYIGYGCYCGYGGSGTPVDELDRCCY-----THDHCYN---- 51
Query: 66 FIYSGVVSYTTGAIQGPTVLSFSNIS-SPTCGPASEDGPYVVSKASKRGKSCSHRLCECD 124
+ G S++ + TC S SC+ +C+CD
Sbjct: 52 -----KAANIPGCNPLIKTYSYTCTKPNITCNDTS--------------DSCARFICDCD 92
Query: 125 RRFSECLR 132
R + C
Sbjct: 93 RTAAICFA 100
>1n28_B Phospholipase A2, membrane associated; hydrolase; 1.50A {Homo
sapiens} SCOP: a.133.1.2 PDB: 1n29_A 1kvo_A* 1ayp_A
1db4_A* 1db5_A* 1dcy_A* 1j1a_A* 1bbc_A* 1kqu_A* 1pod_A
1poe_A*
Length = 124
Score = 59.2 bits (143), Expect = 3e-12
Identities = 30/134 (22%), Positives = 44/134 (32%), Gaps = 32/134 (23%)
Query: 6 SAVQLYSMVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHE-IY 63
+ V + M+ +TG + SY YGC+CG G G P D DR D ++ +
Sbjct: 1 ALVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDATDRCCV-----TQDCCYKRLE 55
Query: 64 IIFIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCEC 123
+ +SY TC SC +LCEC
Sbjct: 56 KRGCGTKFLSYKFSNSGS----------RITCAKQD---------------SCRSQLCEC 90
Query: 124 DRRFSECLRPYSCP 137
D+ + C
Sbjct: 91 DKAAATCFARNKTT 104
>1le6_A Group X secretory phospholipase A2; human phosphatidylcholine
2-acylhydrolase GX, GX SPLA2, SPLA2-X; 1.97A {Homo
sapiens} SCOP: a.133.1.2 PDB: 1le7_A
Length = 123
Score = 58.5 bits (141), Expect = 5e-12
Identities = 24/128 (18%), Positives = 36/128 (28%), Gaps = 28/128 (21%)
Query: 8 VQLYSMVSCSTGCDPLSYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYIIFI 67
++L V C P++Y YGC+CG G G P D ID + +
Sbjct: 3 LELAGTVGCVGPRTPIAYMKYGCFCGLGGHGQPRDAIDWCCHGHDCCYTRAEEAGCSPKT 62
Query: 68 YSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECDRRF 127
++ C C LC+CD+
Sbjct: 63 ERYSWQCVNQSV--------------LC--------------GPAENKCQELLCKCDQEI 94
Query: 128 SECLRPYS 135
+ CL
Sbjct: 95 ANCLAQTE 102
>3jql_A Phospholipase A2 isoform 3; phospholipase A2, hexapeptide,
hydrolase, calcium, disulfide bond, lipid degradation,
metal-binding, secreted; 1.20A {Naja sagittifera} PDB:
1mf4_A 3jq5_A 1ln8_A 3jti_A 3nju_A* 3osh_A* 3q4y_A
1t37_A 1zm6_A 3gci_A 1yxl_A 1oxr_A 1td7_A* 1sz8_A 1a3d_A
1a3f_A 1psh_A 2osh_A 1poa_A 1pob_A* ...
Length = 119
Score = 58.4 bits (141), Expect = 6e-12
Identities = 30/129 (23%), Positives = 46/129 (35%), Gaps = 30/129 (23%)
Query: 6 SAVQLYSMVSCSTGC-DPLSYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYI 64
+ Q +M+ C+ + YGCYCG GSG PVD +DR Q HD+ +
Sbjct: 1 NLYQFKNMIQCTVPSRSWADFADYGCYCGKGGSGTPVDDLDRCCQ-----THDNCYN--- 52
Query: 65 IFIYSGVVSYTTGAIQGPTVLSFSNIS-SPTCGPASEDGPYVVSKASKRGKSCSHRLCEC 123
+G S+ + TC +C+ +C+C
Sbjct: 53 ------EAENISGCRPYFKTYSYECTQGTLTCKGD--------------NNACAASVCDC 92
Query: 124 DRRFSECLR 132
DR + C
Sbjct: 93 DRLAAICFA 101
>1oz6_A Phospholipase A2; enzyme, PLA2, hydrolase; 2.60A {Echis carinatus}
SCOP: a.133.1.2
Length = 120
Score = 57.7 bits (139), Expect = 9e-12
Identities = 31/128 (24%), Positives = 41/128 (32%), Gaps = 32/128 (25%)
Query: 6 SAVQLYSMVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYI 64
+ Q M+ TG P+ SY YGCYCG+ G G P D DR ++ G
Sbjct: 1 NLYQFGRMIWNRTGKLPILSYGSYGCYCGWGGQGPPKDATDRCCLVHDCCYTRVGDCSPK 60
Query: 65 IFIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECD 124
+ +YS C C +CECD
Sbjct: 61 MTLYSYRFENGD----------------IICDNKD---------------PCKRAVCECD 89
Query: 125 RRFSECLR 132
R + CL
Sbjct: 90 REAAICLG 97
>1vip_A Phospholipase A2; hydrolase, anticoagulant; 2.20A {Daboia russellii
russellii} SCOP: a.133.1.2
Length = 121
Score = 57.4 bits (138), Expect = 1e-11
Identities = 33/128 (25%), Positives = 43/128 (33%), Gaps = 32/128 (25%)
Query: 6 SAVQLYSMVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYI 64
+ Q M+ TG +PL SY YGCYCG+ G G P D DR ++
Sbjct: 1 NLFQFAEMIVKMTGKNPLSSYSDYGCYCGWGGKGKPQDATDRCCFVHDCCYEKVKSCKPK 60
Query: 65 IFIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECD 124
+ +YS CG SC +CECD
Sbjct: 61 LSLYSYSFQNGG----------------IVCGDNH---------------SCKRAVCECD 89
Query: 125 RRFSECLR 132
R + C R
Sbjct: 90 RVAATCFR 97
>2g58_A Phospholipase A2 VRV-PL-VIIIA; phospholipase A2, diars,
hydrolase-hydrolase inhibitor compl; HET: PHQ; 0.98A
{Daboia russellii pulchella} SCOP: a.133.1.2 PDB: 1cl5_A
1fb2_A* 1jq8_A 1jq9_A 1kpm_A* 1oxl_A* 1fv0_A* 1q7a_A
1skg_A* 1sv3_A* 1sv9_A* 1sxk_A* 1tdv_A 1tg1_A* 1tg4_A
1th6_A* 1sqz_A 1tjq_A* 1tk4_A 1tp2_A* ...
Length = 121
Score = 57.0 bits (137), Expect = 2e-11
Identities = 32/128 (25%), Positives = 46/128 (35%), Gaps = 32/128 (25%)
Query: 6 SAVQLYSMVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYI 64
S ++ M+ TG + SY YGCYCG+ G G P D DR HD + +
Sbjct: 1 SLLEFGKMILEETGKLAIPSYSSYGCYCGWGGKGTPKDATDRCCF-----VHDCCYG-NL 54
Query: 65 IFIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECD 124
Y + G + C + SC +R+CECD
Sbjct: 55 PDCNPKSDRYKYKRVNG----------AIVCEKGT---------------SCENRICECD 89
Query: 125 RRFSECLR 132
+ + C R
Sbjct: 90 KAAAICFR 97
>1p7o_A Phospholipase A2, mipla4; pancreatic loop, HYDR; 2.30A {Micropechis
ikaheka} SCOP: a.133.1.2 PDB: 1pwo_A 1ozy_A
Length = 124
Score = 56.9 bits (137), Expect = 2e-11
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 30/135 (22%)
Query: 6 SAVQLYSMVSCS-TGCDPL-SYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIY 63
+ +Q +M+ C+ G +PL ++ YGCYCG GSG PVD +DR Q HD+ ++
Sbjct: 1 NLLQFRNMIKCTIPGREPLLAFSNYGCYCGKGGSGTPVDELDRCCQ-----THDNCYD-- 53
Query: 64 IIFIYSGVVSYTTGAIQGPTVLSFSNISS---PTCGPASEDGPYVVSKASKRGKSCSHRL 120
+ + G + GP ++S + TC + + C +
Sbjct: 54 ----KAEKLPECKGILSGPYFNTYSYDCTDGKLTC--------------NDQNDKCKLFI 95
Query: 121 CECDRRFSECLRPYS 135
C CDR + C
Sbjct: 96 CNCDRTAAMCFAKAP 110
>3dih_A Phospholipase A2 homolog, ammodytin L; phospholipase A2 fold,
myotoxin, secreted, toxin; 2.60A {Vipera ammodytes
ammodytes} PDB: 3ux7_A
Length = 122
Score = 57.0 bits (137), Expect = 2e-11
Identities = 29/129 (22%), Positives = 43/129 (33%), Gaps = 34/129 (26%)
Query: 6 SAVQLYSMVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHE-IY 63
S ++ M+ T +PL SY YGC+CG G P D DR H + +
Sbjct: 1 SVIEFGKMIQEETDKNPLTSYSFYGCHCGLGNKGKPKDATDRCCF-----VHSCCYAKLS 55
Query: 64 IIFIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCEC 123
+ Y + CG ++ C ++CEC
Sbjct: 56 DCSPKTNRYEYHREN------------GAIVCGSST---------------PCKKQICEC 88
Query: 124 DRRFSECLR 132
DR + C R
Sbjct: 89 DRAAAICFR 97
>1mc2_A Acutohaemonlysin, phospholipase A2; YS49-phospholipase A2, snake
venom, toxin; 0.85A {Deinagkistrodon acutus} SCOP:
a.133.1.2 PDB: 1mg6_A 1pa0_A 3i03_A* 3hzd_A 3hzw_A*
3cxi_A* 3i3h_A 3i3i_A 1pc9_A 2q2j_A 3cyl_A* 1qll_A*
1xxs_A* 3qnl_A* 2ok9_A* 3iq3_A* 2h8i_A* 3mlm_A* 1y4l_A*
1clp_A* ...
Length = 122
Score = 56.6 bits (136), Expect = 2e-11
Identities = 31/128 (24%), Positives = 44/128 (34%), Gaps = 32/128 (25%)
Query: 6 SAVQLYSMVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYI 64
S +L M+ TG +P+ +Y YGC CG G G P+D DR H ++
Sbjct: 1 SLFELGKMIWQETGKNPVKNYGLYGCNCGVGGRGEPLDATDRCCF-----VHKCCYKKLT 55
Query: 65 IFIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECD 124
Y+ + CG C +CECD
Sbjct: 56 DCDSK-KDRYSYKWKNK----------AIVCGKNQ---------------PCMQEMCECD 89
Query: 125 RRFSECLR 132
+ F+ CLR
Sbjct: 90 KAFAICLR 97
>2aoz_A Myotoxin II, phospholipase A2 homolog; X-RAY diffration,
myotoxicity, atropoides toxin; 2.08A {Atropoides
nummifer}
Length = 121
Score = 56.2 bits (135), Expect = 3e-11
Identities = 30/128 (23%), Positives = 43/128 (33%), Gaps = 32/128 (25%)
Query: 6 SAVQLYSMVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYI 64
+ QL+ M+ TG + SY YGC CG G P D DR H ++ +
Sbjct: 1 NLYQLWKMILQETGKNAAPSYGFYGCNCGVGSRGKPKDATDRCCF-----VHKCCYKA-L 54
Query: 65 IFIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECD 124
SY+ + CG + C + CECD
Sbjct: 55 TDCSPKTDSYSYSWKDK----------TIVCGKNN---------------PCLKQECECD 89
Query: 125 RRFSECLR 132
+ + CLR
Sbjct: 90 KAVAICLR 97
>1jlt_A Phospholipase A2 inhibitor; heterodimer complex, hydrolase,
PLA2-activity; 1.40A {Vipera ammodytes ammodytes} SCOP:
a.133.1.2 PDB: 1vpi_A 1aok_A 1q5t_A 1oqs_A 2h4c_A
Length = 122
Score = 56.2 bits (135), Expect = 4e-11
Identities = 27/128 (21%), Positives = 35/128 (27%), Gaps = 32/128 (25%)
Query: 6 SAVQLYSMVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYI 64
+ Q M+ TG + + SY YGCYCG+ G D DR
Sbjct: 1 NLFQFGDMILQKTGKEAVHSYAIYGCYCGWGGQARAQDATDRCCFAQDCCYGRVNDCNPK 60
Query: 65 IFIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECD 124
Y+ CG C +CECD
Sbjct: 61 TATYTYSFENGD----------------IVCGDND---------------LCLRAVCECD 89
Query: 125 RRFSECLR 132
R + CL
Sbjct: 90 RAAAICLG 97
>1jia_A Phospholipase A2; agkistrodon haLys pallas; 2.13A {Gloydius halys}
SCOP: a.133.1.2 PDB: 1b4w_A 1c1j_A*
Length = 122
Score = 55.8 bits (134), Expect = 5e-11
Identities = 34/126 (26%), Positives = 44/126 (34%), Gaps = 32/126 (25%)
Query: 8 VQLYSMVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYIIF 66
+Q M+ TG +P+ SY YGCYCG G G P D DR HD +E +
Sbjct: 3 LQFRKMIKKMTGKEPVVSYAFYGCYCGSGGRGKPKDATDRCCF-----VHDCCYEK-VTG 56
Query: 67 IYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECDRR 126
YT G + CG C +CECD+
Sbjct: 57 CDPKWDDYTYSWKNG----------TIVCGGDD---------------PCKKEVCECDKA 91
Query: 127 FSECLR 132
+ C R
Sbjct: 92 AAICFR 97
>1gp7_A Phospholipase A2; snake venom, KING cobra, cardiotoxic activity,
myotoxic activity, pancreatic loop, hydrolase, lipid
degradation, calcium; 2.6A {Ophiophagus hannah} SCOP:
a.133.1.2
Length = 151
Score = 55.8 bits (134), Expect = 1e-10
Identities = 30/139 (21%), Positives = 45/139 (32%), Gaps = 32/139 (23%)
Query: 3 RKRSAVQLYSMVSCSTG--CDPLSYKGYGCYCGFLGSGYPVDPIDRTSQLN----MARDH 56
+ +Q +M+ C+ + Y YGCYCG GSG PVD +DR Q++
Sbjct: 25 QPLHLIQFGNMIQCTVPGFLSWIKYADYGCYCGAGGSGTPVDKLDRCCQVHDNCYTQAQK 84
Query: 57 DSGHEIYIIFIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSC 116
+ Y + SY + TC C
Sbjct: 85 LPACSSIMDSPYVKIYSYDCSE------------RTVTCKAD--------------NDEC 118
Query: 117 SHRLCECDRRFSECLRPYS 135
+ +C CDR + C
Sbjct: 119 AAFICNCDRVAAHCFAASP 137
>3r0l_D Phospholipase A2 CB; crotoxin, presynaptic neurotoxin, snake venom,
phospholipase heterodimer interface, hydrolase; 1.35A
{Crotalus durissus terrificus} PDB: 2qog_B 2qog_A 1bjj_A
1a2a_A
Length = 122
Score = 55.1 bits (132), Expect = 1e-10
Identities = 31/131 (23%), Positives = 43/131 (32%), Gaps = 32/131 (24%)
Query: 8 VQLYSMVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYIIF 66
+Q M+ T + + Y YGCYCG+ G G P D DR ++
Sbjct: 3 LQFNKMIKFETRKNAVPFYAFYGCYCGWGGQGRPKDATDRCCFVHDCCYGKLAKCNTKWD 62
Query: 67 IYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECDRR 126
IY + TCG + C ++CECDR
Sbjct: 63 IYRYSLKSGY----------------ITCGKGT---------------WCEEQICECDRV 91
Query: 127 FSECLRPYSCP 137
+ECLR
Sbjct: 92 AAECLRRSLST 102
>1zlb_A Hypotensive phospholipase A2; Asp49-PLA2, toxin, snake venom,
hydrolase; 0.97A {Bothrops jararacussu} SCOP: a.133.1.2
PDB: 1umv_X 1zl7_A 1z76_A* 1u73_A* 1vap_A 3r0l_A
Length = 122
Score = 54.7 bits (131), Expect = 1e-10
Identities = 29/128 (22%), Positives = 39/128 (30%), Gaps = 32/128 (25%)
Query: 6 SAVQLYSMVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYI 64
S Q M++ G + Y YGCYCG G G P D DR ++
Sbjct: 1 SLWQFGKMINYVMGESGVLQYLSYGCYCGLGGQGQPTDATDRCCFVHDCCYGKVTGCNPK 60
Query: 65 IFIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECD 124
I Y+ CG + C ++CECD
Sbjct: 61 IDSYTYSKKN----------------GDVVCGGDN---------------PCKKQICECD 89
Query: 125 RRFSECLR 132
R + C R
Sbjct: 90 RVATTCFR 97
>1bun_A BETA2-bungarotoxin; hydrolase, presynaptic neurotoxin; 2.45A
{Bungarus multicinctus} SCOP: a.133.1.2
Length = 120
Score = 54.2 bits (130), Expect = 2e-10
Identities = 26/133 (19%), Positives = 44/133 (33%), Gaps = 37/133 (27%)
Query: 6 SAVQLYSMVSCSTGCD--PLSYKGYGCYCGFLGSGYPVDPIDRTSQL----NMARDHDSG 59
+ + M+ + C+ Y YGCYCG GSG P+D +DR + +
Sbjct: 1 NLINFMEMIRYTIPCEKTWGEYADYGCYCGAGGSGRPIDALDRCCYVHDNCYGDAEKKHK 60
Query: 60 HEIYIIFIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHR 119
SY+ + + C A+ +C+
Sbjct: 61 CNPKT-------QSYSYKLTKR----------TIICYGAA--------------GTCARI 89
Query: 120 LCECDRRFSECLR 132
+C+CDR + C
Sbjct: 90 VCDCDRTAALCFG 102
>1m8r_A Phospholipase A2; phopholipase A2-metal cation complex, three
alpha, two beta, hydrolase; 1.90A {Gloydius halys} SCOP:
a.133.1.2 PDB: 1m8s_A 1bk9_A* 1psj_A 1ijl_A 1pp2_R
Length = 124
Score = 54.2 bits (130), Expect = 2e-10
Identities = 33/140 (23%), Positives = 45/140 (32%), Gaps = 36/140 (25%)
Query: 6 SAVQLYSMVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYI 64
S VQ +++ + Y YGCYCG+ G G P D DR HD + +
Sbjct: 1 SLVQFETLIMKVAKKSGMQWYSNYGCYCGWGGQGRPQDATDRCCF-----VHDCCYGK-V 54
Query: 65 IFIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECD 124
+ Y+ G CG C +CECD
Sbjct: 55 TGCDPKMDVYSFSEENG----------DIVCGGDD---------------PCKKEICECD 89
Query: 125 RRFSECLR----PYSCPKYK 140
R + C R Y+ KY
Sbjct: 90 RAAAICFRDNLNTYNDKKYW 109
>2h4c_B Phospholipase A2-II; non-inhibitor acidic PLA2, basic PLA2,
heterodimer, hydrolase; 2.60A {Daboia russellii
siamensis}
Length = 122
Score = 53.5 bits (128), Expect = 3e-10
Identities = 29/128 (22%), Positives = 39/128 (30%), Gaps = 32/128 (25%)
Query: 6 SAVQLYSMVSCSTGCDP-LSYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYI 64
+ Q ++ Y YGCYCG+ G G P D DR HD + +
Sbjct: 1 NLFQFARLIDAKQEAFSFFKYISYGCYCGWGGQGTPKDATDRCCF-----VHDCCYAR-V 54
Query: 65 IFIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECD 124
+V Y+ G CG C +CECD
Sbjct: 55 KGCNPKLVEYSYSYRTG----------KIVCGGDD---------------PCLRAVCECD 89
Query: 125 RRFSECLR 132
R + C R
Sbjct: 90 RVAAICFR 97
>1gmz_A Phospholipase A2; hydrolase, neurotoxic; 2.4A {Bothrops pirajai}
SCOP: a.133.1.2
Length = 122
Score = 53.5 bits (128), Expect = 4e-10
Identities = 29/132 (21%), Positives = 39/132 (29%), Gaps = 34/132 (25%)
Query: 8 VQLYSMVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRTSQL-NMARDHDSGHEIYII 65
Q M+ TG P Y YGCYCG G G P D DR + + + +
Sbjct: 3 WQFGKMILKETGKLPFPYYVTYGCYCGVGGRGGPKDATDRCCFVHDCCYGKLTSCKPKT- 61
Query: 66 FIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECDR 125
Y+ G + CG C +CECD+
Sbjct: 62 ------DRYSYSRKDG----------TIVCGEND---------------PCRKEICECDK 90
Query: 126 RFSECLRPYSCP 137
+ C R
Sbjct: 91 AAAVCFRENLDT 102
>3vbz_A Phospholipase A2 homolog, taipoxin beta chain; phospholipase A2
fold, PLA2 fold, neurotoxin, binding; 1.76A {Oxyuranus
scutellatus scutellatus} PDB: 3vc0_A
Length = 118
Score = 53.1 bits (127), Expect = 5e-10
Identities = 32/144 (22%), Positives = 47/144 (32%), Gaps = 34/144 (23%)
Query: 6 SAVQLYSMVSCS--TGCDPLSYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHE-I 62
+ VQ M+ C+ L + YGCYCG +G G PVD +DR Q HD +
Sbjct: 1 NLVQFGFMIECAIRNRRPALDFMNYGCYCGTVGRGTPVDDLDRCCQ-----VHDECYATA 55
Query: 63 YIIFIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCE 122
Y + +Y Q C + C +C
Sbjct: 56 EKHGCYPSLTTYQWECRQV----------GNECNSKT---------------QCEVFVCA 90
Query: 123 CDRRFSECLRPYS-CPKYKAVCRS 145
CD ++CL P + +
Sbjct: 91 CDLAAAKCLAQEDYNPAHFNINTG 114
>4e4c_A Phospholipase A2; hydrolase; HET: MES; 1.80A {Notechis scutatus
scutatus} PDB: 1ae7_A* 2not_A
Length = 119
Score = 52.6 bits (126), Expect = 8e-10
Identities = 29/136 (21%), Positives = 41/136 (30%), Gaps = 38/136 (27%)
Query: 6 SAVQLYSMVSCSTGCD--PLSYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIY 63
+ VQ ++ C+ Y YGCYCG GSG PVD +DR + HD ++
Sbjct: 1 NLVQFSYLIQCANHGKRPTWHYMDYGCYCGAGGSGTPVDELDRCCK-----IHDDCYDE- 54
Query: 64 IIFIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKA----SKRGKSCSHR 119
C P Y + K C
Sbjct: 55 --------------------------AGKKGCFPKMSAYDYYCGENGPYCRNIKKKCLRF 88
Query: 120 LCECDRRFSECLRPYS 135
+C+CD + C
Sbjct: 89 VCDCDVEAAFCFAKAP 104
>1jlt_B Phospholipase A2, vipoxin; heterodimer complex, hydrolase,
PLA2-activity; 1.40A {Vipera ammodytes ammodytes} SCOP:
a.133.1.2 PDB: 1rgb_A* 2i0u_E* 1aok_B 1oqs_B
Length = 122
Score = 52.4 bits (125), Expect = 1e-09
Identities = 27/128 (21%), Positives = 41/128 (32%), Gaps = 32/128 (25%)
Query: 6 SAVQLYSMVSCSTGCDP-LSYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYI 64
+ Q M++ G +Y YGCYCG+ G G P D DR ++ +
Sbjct: 1 NLFQFAKMINGKLGAFSVWNYISYGCYCGWGGQGTPKDATDRCCFVH----DCCYGRVRG 56
Query: 65 IFIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECD 124
+ SY+ + CG + C +CECD
Sbjct: 57 CNPKLAIYSYSFKK------------GNIVCGKNN---------------GCLRDICECD 89
Query: 125 RRFSECLR 132
R + C
Sbjct: 90 RVAANCFH 97
>2qhd_A Phospholipase A2; beta sheet, three helices, protein-ligand
complex, hydrolase; HET: DAO; 1.95A {Echis carinatus}
PDB: 2qhe_A 3bjw_A*
Length = 122
Score = 52.0 bits (124), Expect = 1e-09
Identities = 33/128 (25%), Positives = 45/128 (35%), Gaps = 32/128 (25%)
Query: 6 SAVQLYSMVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYI 64
S V+L M+ TG P SY YGC+CG G P+D DR H ++ +
Sbjct: 1 SVVELGKMIIQETGKSPFPSYTSYGCFCGGGERGPPLDATDRCCL-----AHSCCYDT-L 54
Query: 65 IFIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECD 124
Y G C ++ SC R+CECD
Sbjct: 55 PDCSPKTDRYKYKRENG----------EIICENST---------------SCKKRICECD 89
Query: 125 RRFSECLR 132
+ + CLR
Sbjct: 90 KAVAVCLR 97
>1g4i_A Phospholipase A2; lipid degradation, hydrolase; 0.97A {Bos taurus}
SCOP: a.133.1.2 PDB: 1bvm_A 1fdk_A* 1bp2_A 1mkt_A
1mkv_A* 1une_A 2bpp_A 4bp2_A 2bp2_A 1kvy_A 1bpq_A 2zp3_A
1ceh_A 3bp2_A 2zp5_A 1kvx_A 1kvw_A 2zp4_A 1irb_A 2bax_A*
...
Length = 123
Score = 51.6 bits (123), Expect = 2e-09
Identities = 33/130 (25%), Positives = 43/130 (33%), Gaps = 24/130 (18%)
Query: 8 VQLYSMVSCSTGCDP--LSYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYII 65
Q M+ C L + YGCYCG GSG PVD +DR Q HD+ ++
Sbjct: 3 WQFNGMIKCKIPSSEPLLDFNNYGCYCGLGGSGTPVDDLDRCCQ-----THDNCYKQ--A 55
Query: 66 FIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECDR 125
S SN + TC S +C +C CDR
Sbjct: 56 KKLDSCKVLVDNPYTNNYSYSCSN-NEITC--------------SSENNACEAFICNCDR 100
Query: 126 RFSECLRPYS 135
+ C
Sbjct: 101 NAAICFSKVP 110
>1m8t_A Phospholipase A2; twinned crystal, alpha, beta, hydrolase; 2.10A
{Ophiophagus hannah} SCOP: a.133.1.2
Length = 119
Score = 49.2 bits (117), Expect = 2e-08
Identities = 32/143 (22%), Positives = 46/143 (32%), Gaps = 32/143 (22%)
Query: 8 VQLYSMVSCSTG--CDPLSYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYII 65
VQ M+ C+ Y YGCYCG GSG PVD +DR Q HD+ +
Sbjct: 3 VQFNGMIRCTIPGSIPWWDYSDYGCYCGSGGSGTPVDELDRCCQ-----VHDNCYT---- 53
Query: 66 FIYSGVVSYTTGAIQGPTVLSFSNIS-SPTCGPASEDGPYVVSKASKRGKSCSHRLCECD 124
T S+ + TC C+ +C+CD
Sbjct: 54 -----QAQQLTECSPYSKRYSYDCSEGTLTCKAD--------------NDECAAFVCDCD 94
Query: 125 RRFSECLRPYSC-PKYKAVCRSN 146
R + C + + +
Sbjct: 95 RVAAICFAGAPYNKENINIDTTT 117
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.044
Identities = 21/138 (15%), Positives = 37/138 (26%), Gaps = 53/138 (38%)
Query: 43 PIDRTSQLNMARDHDSGH-EIYIIFIYSGVVSYTTGAIQGPTVLSFS------NISSPTC 95
P D+ S + R G+ ++ IF G G QG T F
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIF---G------G--QGNTDDYFEELRDLYQTYHVLV 184
Query: 96 GPASEDGPYVVSKASKRGKSCSHRLCECDRRFSECLR--------------------PYS 135
G ++ +++ + ++ F++ L P S
Sbjct: 185 GD-------LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS 237
Query: 136 CP--------KYKAVCRS 145
CP Y +
Sbjct: 238 CPLIGVIQLAHYVVTAKL 255
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG
BMA MAN; 2.00A {Homo sapiens}
Length = 424
Score = 28.4 bits (63), Expect = 1.0
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 102 GPYVVSKASKRGKSCSHRLCECDRRFSECLRPYSCPKYKAVCRSNVFRLM 151
GP+++ + CS LC C+R S PK + F +
Sbjct: 326 GPFIL-NVTSGALLCSQALC---SGHGRCVRRTSHPKALLLLNPASFSIQ 371
>1urj_A Major DNA-binding protein; SSB, ICP8, HSV-1, DNA replication,
zinc-finger, nuclear protein.; 3.0A {Human herpesvirus
1} SCOP: e.58.1.1
Length = 1136
Score = 27.3 bits (60), Expect = 2.7
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 112 RGKSCSHRLCECDRRFSECLRPYS---CPKYKAVCRSNVFRLMQNLILI 157
R L E + S L PY+ CP + + R + + Q+L L
Sbjct: 639 RNFKFRDGLGEANHAMSLTLDPYACGPCPLLQLLGRRSNLAVYQDLALS 687
>3r0l_B Crotoxin chain B; crotoxin, presynaptic neurotoxin, snake venom,
phospholipase heterodimer interface, hydrolase; 1.35A
{Crotalus durissus terrificus}
Length = 35
Score = 23.8 bits (51), Expect = 6.4
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 116 CSHRLCECDRRFSECLR 132
C ++CECD+ + C R
Sbjct: 14 CGTQICECDKAAAICFR 30
>1lla_A Hemocyanin (subunit type II); oxygen transport; 2.18A {Limulus
polyphemus} SCOP: a.85.1.1 a.86.1.1 b.1.18.3 PDB: 1nol_A
1ll1_A 1oxy_A
Length = 628
Score = 25.7 bits (56), Expect = 8.1
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 14/72 (19%)
Query: 9 QLYSMVS-----CSTGCDPLSYKGYGCYCGFLGS--------GYPVD-PIDRTSQLNMAR 54
L+ M++ G + ++ YCG G+P D PI +
Sbjct: 555 HLFVMLTDWDKDKVDGSESVACVDAVSYCGARDHKYPDKKPMGFPFDRPIHTEHISDFLT 614
Query: 55 DHDSGHEIYIIF 66
++ +I I F
Sbjct: 615 NNMFIKDIKIKF 626
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.437
Gapped
Lambda K H
0.267 0.0584 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,317,696
Number of extensions: 125025
Number of successful extensions: 274
Number of sequences better than 10.0: 1
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 63
Length of query: 157
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,300,587
Effective search space: 305341677
Effective search space used: 305341677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.5 bits)