RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12202
(157 letters)
>d1le6a_ a.133.1.2 (A:) Phospholipase A2 {Human (Homo sapiens),
SPLA2 [TaxId: 9606]}
Length = 123
Score = 60.0 bits (145), Expect = 5e-13
Identities = 27/128 (21%), Positives = 39/128 (30%), Gaps = 28/128 (21%)
Query: 8 VQLYSMVSCSTGCDPLSYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYIIFI 67
++L V C P++Y YGC+CG G G P D ID + +
Sbjct: 3 LELAGTVGCVGPRTPIAYMKYGCFCGLGGHGQPRDAIDWCCHGHDCCYTRAEEAGCSPKT 62
Query: 68 YSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECDRRF 127
++ CGPA C LC+CD+
Sbjct: 63 ERYSWQCVNQSV--------------LCGPAE--------------NKCQELLCKCDQEI 94
Query: 128 SECLRPYS 135
+ CL
Sbjct: 95 ANCLAQTE 102
>d1sz8a_ a.133.1.2 (A:) Snake phospholipase A2 {Andaman cobra (Naja
sagittifera), acidic isoform 1 [TaxId: 195058]}
Length = 119
Score = 56.1 bits (135), Expect = 1e-11
Identities = 33/136 (24%), Positives = 50/136 (36%), Gaps = 30/136 (22%)
Query: 8 VQLYSMVSCSTGCDP-LSYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYIIF 66
Q +M+ C+ + YGCYCG GSG PVD +DR Q++ ++ I
Sbjct: 3 YQFKNMIQCTVPSRSWQDFADYGCYCGKGGSGTPVDDLDRCCQVH-DNCYNEAENISGCR 61
Query: 67 IYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECDRR 126
Y SY + + TC +C+ +C+CDR
Sbjct: 62 PYFKTYSYE-----------CTQ-GTLTCKGD--------------NNACAASVCDCDRL 95
Query: 127 FSECLR--PYSCPKYK 140
+ C PY+ Y
Sbjct: 96 AAICFAGAPYNDANYN 111
>d2g58a1 a.133.1.2 (A:1-133) Snake phospholipase A2 {Snake (Daboia
russellii pulchella), different isoforms [TaxId: 97228]}
Length = 121
Score = 56.1 bits (135), Expect = 2e-11
Identities = 32/129 (24%), Positives = 46/129 (35%), Gaps = 34/129 (26%)
Query: 6 SAVQLYSMVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHE-IY 63
S ++ M+ TG + SY YGCYCG+ G G P D DR + HD + +
Sbjct: 1 SLLEFGKMILEETGKLAIPSYSSYGCYCGWGGKGTPKDATDRCCFV-----HDCCYGNLP 55
Query: 64 IIFIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCEC 123
S Y + C + SC +R+CEC
Sbjct: 56 DCNPKSDRYKYKRVN------------GAIVCEKGT---------------SCENRICEC 88
Query: 124 DRRFSECLR 132
D+ + C R
Sbjct: 89 DKAAAICFR 97
>d1g0za_ a.133.1.2 (A:) Snake phospholipase A2 {Indian krait
(Bungarus caeruleus), different isoforms [TaxId:
132961]}
Length = 118
Score = 55.7 bits (134), Expect = 2e-11
Identities = 36/136 (26%), Positives = 53/136 (38%), Gaps = 29/136 (21%)
Query: 6 SAVQLYSMVSCSTGCDPLSYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYII 65
+ Q +M+ C+ SY GYGCYCG+ GSG PVD +DR + ++ I
Sbjct: 1 NLKQFKNMIQCAGTRTWTSYIGYGCYCGYGGSGTPVDELDRCCYTH-DHCYNKAANIPGC 59
Query: 66 FIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECDR 125
SYT + + TC S+ SC+ +C+CDR
Sbjct: 60 NPLIKTYSYT-----------CTK-PNITCNDTSD--------------SCARFICDCDR 93
Query: 126 RFSECLR--PYSCPKY 139
+ C PY+
Sbjct: 94 TAAICFASAPYNINNI 109
>d1n28a_ a.133.1.2 (A:) Phospholipase A2 {Human (Homo sapiens),
synovial fluid [TaxId: 9606]}
Length = 124
Score = 55.7 bits (134), Expect = 2e-11
Identities = 34/128 (26%), Positives = 44/128 (34%), Gaps = 30/128 (23%)
Query: 6 SAVQLYSMVSCSTGCDP-LSYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYI 64
+ V + M+ +TG + LSY YGC+CG G G P D DR D
Sbjct: 1 ALVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDATDRCCVT-----QDC------ 49
Query: 65 IFIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECD 124
Y + G S S S TC SC +LCECD
Sbjct: 50 --CYKRLEKRGCGTKFLSYKFSNSG-SRITCAKQD---------------SCRSQLCECD 91
Query: 125 RRFSECLR 132
+ + C
Sbjct: 92 KAAATCFA 99
>d1jltb_ a.133.1.2 (B:) Snake phospholipase A2 {Sand viper (Vipera
ammodytes meridionalis), vipoxin catalytic subunit
[TaxId: 8704]}
Length = 122
Score = 55.4 bits (133), Expect = 3e-11
Identities = 31/133 (23%), Positives = 42/133 (31%), Gaps = 32/133 (24%)
Query: 6 SAVQLYSMVSCSTGCDP-LSYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYI 64
+ Q M++ G +Y YGCYCG+ G G P D DR ++
Sbjct: 1 NLFQFAKMINGKLGAFSVWNYISYGCYCGWGGQGTPKDATDRCCFVHDCCYGRVRGCNPK 60
Query: 65 IFIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECD 124
+ IYS S+ G I CG C +CECD
Sbjct: 61 LAIYS--YSFKKGNI--------------VCGK---------------NNGCLRDICECD 89
Query: 125 RRFSECLRPYSCP 137
R + C
Sbjct: 90 RVAANCFHQNKNT 102
>d1ppaa_ a.133.1.2 (A:) Snake phospholipase A2 {Eastern cottonmouth
snake (Agkistrodon piscivorus piscivorus) [TaxId: 8716]}
Length = 121
Score = 53.8 bits (129), Expect = 9e-11
Identities = 31/129 (24%), Positives = 47/129 (36%), Gaps = 34/129 (26%)
Query: 6 SAVQLYSMVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHE-IY 63
S ++L M+ TG + + SY YGC CG+ G P D DR + H ++ +
Sbjct: 1 SVLELGKMILQETGKNAITSYGSYGCNCGWGHRGQPKDATDRCCFV-----HKCCYKKLT 55
Query: 64 IIFIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCEC 123
+ SY S+ N + C C +CEC
Sbjct: 56 DCNHKTDRYSY-----------SWKN-KAIICEE---------------KNPCLKEMCEC 88
Query: 124 DRRFSECLR 132
D+ + CLR
Sbjct: 89 DKAVAICLR 97
>d1p7oa_ a.133.1.2 (A:) Snake phospholipase A2 {Small-eye snake
(Micropechis ikaheka), different isoforms [TaxId:
66188]}
Length = 124
Score = 53.8 bits (129), Expect = 1e-10
Identities = 34/141 (24%), Positives = 51/141 (36%), Gaps = 35/141 (24%)
Query: 8 VQLYSMVSCS-TGCDP-LSYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYII 65
+Q +M+ C+ G +P L++ YGCYCG GSG PVD +DR + HD+ ++
Sbjct: 3 LQFRNMIKCTIPGREPLLAFSNYGCYCGKGGSGTPVDELDRCC-----QTHDNCYD---- 53
Query: 66 FIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKAS----KRGKSCSHRLC 121
GP Y + + C +C
Sbjct: 54 -----------------KAEKLPECKGILSGPYFNTYSYDCTDGKLTCNDQNDKCKLFIC 96
Query: 122 ECDRRFSECLR--PYSCPKYK 140
CDR + C PY+ Y
Sbjct: 97 NCDRTAAMCFAKAPYN-EAYN 116
>d1m8ta_ a.133.1.2 (A:) Snake phospholipase A2 {King cobra
(Ophiophagus hannah), an acidic isoform [TaxId: 8665]}
Length = 119
Score = 53.4 bits (128), Expect = 1e-10
Identities = 32/130 (24%), Positives = 45/130 (34%), Gaps = 29/130 (22%)
Query: 8 VQLYSMVSCSTG--CDPLSYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYII 65
VQ M+ C+ Y YGCYCG GSG PVD +DR Q++ + ++
Sbjct: 3 VQFNGMIRCTIPGSIPWWDYSDYGCYCGSGGSGTPVDELDRCCQVH-DNCYTQAQQLTEC 61
Query: 66 FIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECDR 125
YS SY + TC C+ +C+CDR
Sbjct: 62 SPYSKRYSYDCSE------------GTLTCKAD--------------NDECAAFVCDCDR 95
Query: 126 RFSECLRPYS 135
+ C
Sbjct: 96 VAAICFAGAP 105
>d1mc2a_ a.133.1.2 (A:) Snake phospholipase A2 {Hundred-pace snake
(Agkistrodon acutus) [TaxId: 36307]}
Length = 122
Score = 53.4 bits (128), Expect = 2e-10
Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 32/128 (25%)
Query: 6 SAVQLYSMVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYI 64
S +L M+ TG +P+ +Y YGC CG G G P+D DR + H ++ +
Sbjct: 1 SLFELGKMIWQETGKNPVKNYGLYGCNCGVGGRGEPLDATDRCCFV-----HKCCYKK-L 54
Query: 65 IFIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECD 124
S Y+ + N + CG + C +CECD
Sbjct: 55 TDCDSKKDRYSY---------KWKN-KAIVCGK---------------NQPCMQEMCECD 89
Query: 125 RRFSECLR 132
+ F+ CLR
Sbjct: 90 KAFAICLR 97
>d1oz6a_ a.133.1.2 (A:) Snake phospholipase A2 {Saw-scaled viper
(Echis carinatus) [TaxId: 40353]}
Length = 120
Score = 53.0 bits (127), Expect = 2e-10
Identities = 34/126 (26%), Positives = 43/126 (34%), Gaps = 32/126 (25%)
Query: 8 VQLYSMVSCSTGCDP-LSYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYIIF 66
Q M+ TG P LSY YGCYCG+ G G P D DR ++ G +
Sbjct: 3 YQFGRMIWNRTGKLPILSYGSYGCYCGWGGQGPPKDATDRCCLVHDCCYTRVGDCSPKMT 62
Query: 67 IYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECDRR 126
+YS + G I C C +CECDR
Sbjct: 63 LYS--YRFENGDI--------------ICDNKDP---------------CKRAVCECDRE 91
Query: 127 FSECLR 132
+ CL
Sbjct: 92 AAICLG 97
>d1bjja_ a.133.1.2 (A:) Snake phospholipase A2 {Snake (Agkistrodon
halys) [TaxId: 8714]}
Length = 122
Score = 53.1 bits (127), Expect = 2e-10
Identities = 32/126 (25%), Positives = 46/126 (36%), Gaps = 32/126 (25%)
Query: 8 VQLYSMVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYIIF 66
+Q M+ TG + + Y YGCYCG+ G G P D DR ++ +
Sbjct: 3 LQFNKMIKEETGKNAIPFYAFYGCYCGWGGQGKPKDGTDRCCFVHDCCYGRLVNCNTKSD 62
Query: 67 IYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECDRR 126
IYS + TCG + +C ++CECDR
Sbjct: 63 IYSYSLKEGY----------------ITCGKGT---------------NCEEQICECDRV 91
Query: 127 FSECLR 132
+EC R
Sbjct: 92 AAECFR 97
>d1g4ia_ a.133.1.2 (A:) Phospholipase A2 {Cow (Bos taurus), pancreas
[TaxId: 9913]}
Length = 123
Score = 52.7 bits (126), Expect = 3e-10
Identities = 32/145 (22%), Positives = 48/145 (33%), Gaps = 39/145 (26%)
Query: 6 SAVQLYSMVSCSTGCDP--LSYKGYGCYCGFLGSGYPVDPIDRTSQLN------MARDHD 57
+ Q M+ C L + YGCYCG GSG PVD +DR Q + +
Sbjct: 1 ALWQFNGMIKCKIPSSEPLLDFNNYGCYCGLGGSGTPVDDLDRCCQTHDNCYKQAKKLDS 60
Query: 58 SGHEIYIIFIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCS 117
+ + + S + I TC +C
Sbjct: 61 CKVLVDNPYTNNYSYSCSNNEI--------------TCS--------------SENNACE 92
Query: 118 HRLCECDRRFSECLR--PYSCPKYK 140
+C CDR + C PY+ ++K
Sbjct: 93 AFICNCDRNAAICFSKVPYN-KEHK 116
>d1buna_ a.133.1.2 (A:) Snake phospholipase A2 {Many-banded krait
(Bungarus multicinctus), beta2-bungarotoxin [TaxId:
8616]}
Length = 120
Score = 51.9 bits (124), Expect = 6e-10
Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 29/127 (22%)
Query: 8 VQLYSMVSCSTGCDP--LSYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYII 65
+ M+ + C+ Y YGCYCG GSG P+D +DR D+ G
Sbjct: 3 INFMEMIRYTIPCEKTWGEYADYGCYCGAGGSGRPIDALDRCCY---VHDNCYGDAEKKH 59
Query: 66 FIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECDR 125
SY+ + + C A+ +C+ +C+CDR
Sbjct: 60 KCNPKTQSYSYKLTKR----------TIICYGAA--------------GTCARIVCDCDR 95
Query: 126 RFSECLR 132
+ C
Sbjct: 96 TAALCFG 102
>d1jlta_ a.133.1.2 (A:) Snake phospholipase A2 {Sand viper (Vipera
ammodytes meridionalis), vipoxin inhibitor [TaxId:
8704]}
Length = 122
Score = 51.5 bits (123), Expect = 9e-10
Identities = 31/126 (24%), Positives = 38/126 (30%), Gaps = 32/126 (25%)
Query: 8 VQLYSMVSCSTGCDP-LSYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYIIF 66
Q M+ TG + SY YGCYCG+ G D DR D +
Sbjct: 3 FQFGDMILQKTGKEAVHSYAIYGCYCGWGGQARAQDATDRCCFA-----QDCCYG----- 52
Query: 67 IYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECDRR 126
+ T SF N CG C +CECDR
Sbjct: 53 RVNDCNPKTA-----TYTYSFEN-GDIVCGD---------------NDLCLRAVCECDRA 91
Query: 127 FSECLR 132
+ CL
Sbjct: 92 AAICLG 97
>d1vipa_ a.133.1.2 (A:) Snake phospholipase A2 {Russell's viper
(Vipera russelli) [TaxId: 8707]}
Length = 121
Score = 51.1 bits (122), Expect = 9e-10
Identities = 36/126 (28%), Positives = 45/126 (35%), Gaps = 32/126 (25%)
Query: 8 VQLYSMVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYIIF 66
Q M+ TG +PL SY YGCYCG+ G G P D DR HD +E +
Sbjct: 3 FQFAEMIVKMTGKNPLSSYSDYGCYCGWGGKGKPQDATDRC-----CFVHDCCYEK-VKS 56
Query: 67 IYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECDRR 126
+ Y+ G CG SC +CECDR
Sbjct: 57 CKPKLSLYSYSFQNG----------GIVCGDNH---------------SCKRAVCECDRV 91
Query: 127 FSECLR 132
+ C R
Sbjct: 92 AATCFR 97
>d1gmza_ a.133.1.2 (A:) Snake phospholipase A2 {Snake (Bothrops
pirajai), piratoxin III [TaxId: 113192]}
Length = 122
Score = 51.5 bits (123), Expect = 9e-10
Identities = 32/129 (24%), Positives = 42/129 (32%), Gaps = 34/129 (26%)
Query: 6 SAVQLYSMVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGH-EIY 63
Q M+ TG P Y YGCYCG G G P D DR HD + ++
Sbjct: 1 DLWQFGKMILKETGKLPFPYYVTYGCYCGVGGRGGPKDATDRCCF-----VHDCCYGKLT 55
Query: 64 IIFIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCEC 123
+ SY S + + CG C +CEC
Sbjct: 56 SCKPKTDRYSY-----------SRKD-GTIVCGEND---------------PCRKEICEC 88
Query: 124 DRRFSECLR 132
D+ + C R
Sbjct: 89 DKAAAVCFR 97
>d1m8ra_ a.133.1.2 (A:) Snake phospholipase A2 {Snake (Agkistrodon
halys) [TaxId: 8714]}
Length = 124
Score = 51.1 bits (122), Expect = 1e-09
Identities = 29/135 (21%), Positives = 39/135 (28%), Gaps = 42/135 (31%)
Query: 6 SAVQLYSMVSCSTGCDPL-SYKGYGCYCGFLGSGYPVDPIDRTSQ-----LNMARDHDSG 59
S VQ +++ + Y YGCYCG+ G G P D DR D
Sbjct: 1 SLVQFETLIMKVAKKSGMQWYSNYGCYCGWGGQGRPQDATDRCCFVHDCCYGKVTGCDPK 60
Query: 60 HEIYIIFIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHR 119
++Y +G CG C
Sbjct: 61 MDVYSFSEENG---------------------DIVCGG---------------DDPCKKE 84
Query: 120 LCECDRRFSECLRPY 134
+CECDR + C R
Sbjct: 85 ICECDRAAAICFRDN 99
>d1jiaa_ a.133.1.2 (A:) Snake phospholipase A2 {Snake (Agkistrodon
halys) [TaxId: 8714]}
Length = 122
Score = 51.1 bits (122), Expect = 1e-09
Identities = 34/127 (26%), Positives = 46/127 (36%), Gaps = 34/127 (26%)
Query: 8 VQLYSMVSCSTGCDP-LSYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHE-IYII 65
+Q M+ TG +P +SY YGCYCG G G P D DR HD +E +
Sbjct: 3 LQFRKMIKKMTGKEPVVSYAFYGCYCGSGGRGKPKDATDRCCF-----VHDCCYEKVTGC 57
Query: 66 FIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECDR 125
+Y S+ N + CG C +CECD+
Sbjct: 58 DPKWDDYTY-----------SWKN-GTIVCGG---------------DDPCKKEVCECDK 90
Query: 126 RFSECLR 132
+ C R
Sbjct: 91 AAAICFR 97
>d1zlba1 a.133.1.2 (A:1-122) Snake phospholipase A2 {Jararacussu
(Bothrops jararacussu) [TaxId: 8726]}
Length = 122
Score = 50.3 bits (120), Expect = 2e-09
Identities = 32/128 (25%), Positives = 42/128 (32%), Gaps = 32/128 (25%)
Query: 6 SAVQLYSMVSCSTGCDP-LSYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYI 64
S Q M++ G L Y YGCYCG G G P D DR ++
Sbjct: 1 SLWQFGKMINYVMGESGVLQYLSYGCYCGLGGQGQPTDATDRCCFVHDCCYGKVTGCNPK 60
Query: 65 IFIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECD 124
I Y+ S G + CG + C ++CECD
Sbjct: 61 IDSYT--YSKKNGDV--------------VCGGDN---------------PCKKQICECD 89
Query: 125 RRFSECLR 132
R + C R
Sbjct: 90 RVATTCFR 97
>d1ae7a_ a.133.1.2 (A:) Snake phospholipase A2 {Mainland tiger snake
(Notechis scutatus scutatus), notexin [TaxId: 8663]}
Length = 119
Score = 46.5 bits (110), Expect = 6e-08
Identities = 31/127 (24%), Positives = 42/127 (33%), Gaps = 30/127 (23%)
Query: 8 VQLYSMVSCSTGCD--PLSYKGYGCYCGFLGSGYPVDPIDRTSQLNMARDHDSGHEIYII 65
VQ ++ C+ Y YGCYCG GSG PVD +DR + HD +
Sbjct: 3 VQFSYLIQCANHGKRPTWHYMDYGCYCGAGGSGTPVDELDRCC-----KIHDDCY----- 52
Query: 66 FIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKSCSHRLCECDR 125
+ C E+GPY K C +C+CD
Sbjct: 53 -----------DEAGKKGCFPKMSAYDYYC---GENGPYC----RNIKKKCLRFVCDCDV 94
Query: 126 RFSECLR 132
+ C
Sbjct: 95 EAAFCFA 101
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 27.6 bits (60), Expect = 0.62
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 57 DSGHEIYIIFIYSGVVSYTTGAIQGPTVLSFSNISSPTCGPASEDGPYVVSKASKRGKS 115
S + ++ + + + I + S I + C A G + + GK+
Sbjct: 82 FSADGKRL-YVANITPAASVTVIDAVSKKMLSEIDTAACVLAYPAGDDRFTALCESGKA 139
>d1nkga3 b.30.5.10 (A:1-250) Rhamnogalacturonase B, RhgB, N-terminal
domain {Aspergillus aculeatus [TaxId: 5053]}
Length = 250
Score = 25.1 bits (55), Expect = 4.5
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 57 DSGHEIYIIFIYSGVV---SYTTGAIQGPTVLSFSNISSPT 94
S + +Y ++ SG V SY G + GP + FS +P+
Sbjct: 197 GSYNALYW-YMNSGHVQTESYRMG-LHGPYSMYFSRSGTPS 235
>d1gff1_ b.121.5.1 (1:) Microvirus capsid proteins {Bacteriophage G4
[TaxId: 10843]}
Length = 417
Score = 24.8 bits (54), Expect = 5.1
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 32 CGFLGSGYPVDPIDRTSQLNMA 53
F SGY VD D++S +
Sbjct: 231 SEFWASGYDVDGTDQSSLGQFS 252
>d2hy5a1 c.114.1.1 (A:1-130) Sulfurtransferase DsrE {Chromatium
vinosum [TaxId: 1049]}
Length = 130
Score = 24.6 bits (53), Expect = 5.1
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 40 PVDPIDRTSQLNMARD-HDSGHEIYIIFIYSGVVSYTTGAIQGP 82
P S A+ + GHEI+ +F Y V+ +T P
Sbjct: 11 PYQHQASDSAYQFAKAALEKGHEIFRVFFYHDGVNNSTRLTTPP 54
>d2bpa1_ b.121.5.1 (1:) Microvirus capsid proteins {Bacteriophage
phi-X174 [TaxId: 10847]}
Length = 426
Score = 24.8 bits (54), Expect = 5.6
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 32 CGFLGSGYPVDPIDRTSQLNMA 53
SGY VD D+TS +
Sbjct: 240 SNLWASGYDVDGTDQTSLGQFS 261
>d1poca_ a.133.1.1 (A:) Phospholipase A2 {European honeybee (Apis
mellifera) [TaxId: 7460]}
Length = 134
Score = 24.1 bits (52), Expect = 6.8
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 121 CECDRRFSECLRP 133
C+CD +F +CL+
Sbjct: 61 CDCDDKFYDCLKN 73
>d1lmla_ d.92.1.3 (A:) Leishmanolysin {Leishmania major [TaxId:
5664]}
Length = 475
Score = 24.4 bits (52), Expect = 7.7
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 136 CPKYKAVCRSNV 147
CP Y VC+ NV
Sbjct: 459 CPPYVEVCQGNV 470
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.437
Gapped
Lambda K H
0.267 0.0402 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 584,049
Number of extensions: 25203
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 41
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)